Multiple sequence alignment - TraesCS4B01G332600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G332600 chr4B 100.000 3095 0 0 1 3095 623162618 623165712 0.000000e+00 5716
1 TraesCS4B01G332600 chr4D 91.874 2609 100 47 544 3095 487631399 487633952 0.000000e+00 3541
2 TraesCS4B01G332600 chr4D 85.430 151 18 3 279 425 487631119 487631269 1.490000e-33 154
3 TraesCS4B01G332600 chr5A 94.478 1648 47 21 655 2272 669564312 669565945 0.000000e+00 2499
4 TraesCS4B01G332600 chr5A 83.957 829 52 39 2274 3095 669566014 669566768 0.000000e+00 719
5 TraesCS4B01G332600 chr1D 88.374 1101 115 13 1001 2096 294131591 294132683 0.000000e+00 1312
6 TraesCS4B01G332600 chr1B 88.091 1100 120 11 1001 2096 395752355 395753447 0.000000e+00 1295
7 TraesCS4B01G332600 chr1A 88.091 1100 120 11 1001 2096 366543259 366544351 0.000000e+00 1295


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G332600 chr4B 623162618 623165712 3094 False 5716.0 5716 100.0000 1 3095 1 chr4B.!!$F1 3094
1 TraesCS4B01G332600 chr4D 487631119 487633952 2833 False 1847.5 3541 88.6520 279 3095 2 chr4D.!!$F1 2816
2 TraesCS4B01G332600 chr5A 669564312 669566768 2456 False 1609.0 2499 89.2175 655 3095 2 chr5A.!!$F1 2440
3 TraesCS4B01G332600 chr1D 294131591 294132683 1092 False 1312.0 1312 88.3740 1001 2096 1 chr1D.!!$F1 1095
4 TraesCS4B01G332600 chr1B 395752355 395753447 1092 False 1295.0 1295 88.0910 1001 2096 1 chr1B.!!$F1 1095
5 TraesCS4B01G332600 chr1A 366543259 366544351 1092 False 1295.0 1295 88.0910 1001 2096 1 chr1A.!!$F1 1095

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
92 93 0.110678 TATTCCCGTGGTGCCAAACA 59.889 50.0 0.00 0.0 0.00 2.83 F
272 273 0.178301 AAAACTAGAGCTAGCCCGGC 59.822 55.0 12.13 0.0 36.66 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1677 1761 1.726265 GTAGGACACGTAGAGGCGG 59.274 63.158 0.0 0.0 35.98 6.13 R
2179 2267 7.229106 AGCACTAGTAGTACTCCATTAGCTAAC 59.771 40.741 8.7 0.0 0.00 2.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.674754 TGCCGTTGGAGATTCCCC 59.325 61.111 0.00 0.00 35.03 4.81
18 19 2.124278 GCCGTTGGAGATTCCCCC 60.124 66.667 0.00 0.00 35.03 5.40
19 20 2.978946 GCCGTTGGAGATTCCCCCA 61.979 63.158 0.00 0.00 35.03 4.96
20 21 1.922821 CCGTTGGAGATTCCCCCAT 59.077 57.895 0.00 0.00 35.03 4.00
21 22 0.466189 CCGTTGGAGATTCCCCCATG 60.466 60.000 0.00 0.00 35.03 3.66
22 23 1.103398 CGTTGGAGATTCCCCCATGC 61.103 60.000 0.00 0.00 35.03 4.06
23 24 0.259938 GTTGGAGATTCCCCCATGCT 59.740 55.000 0.00 0.00 35.03 3.79
24 25 1.009997 TTGGAGATTCCCCCATGCTT 58.990 50.000 0.00 0.00 35.03 3.91
25 26 1.009997 TGGAGATTCCCCCATGCTTT 58.990 50.000 0.00 0.00 35.03 3.51
26 27 1.362237 TGGAGATTCCCCCATGCTTTT 59.638 47.619 0.00 0.00 35.03 2.27
27 28 2.225598 TGGAGATTCCCCCATGCTTTTT 60.226 45.455 0.00 0.00 35.03 1.94
57 58 7.488187 AATGGTCATACATTCAAATCTCTCG 57.512 36.000 0.00 0.00 36.36 4.04
58 59 5.977635 TGGTCATACATTCAAATCTCTCGT 58.022 37.500 0.00 0.00 0.00 4.18
59 60 6.406370 TGGTCATACATTCAAATCTCTCGTT 58.594 36.000 0.00 0.00 0.00 3.85
60 61 7.552459 TGGTCATACATTCAAATCTCTCGTTA 58.448 34.615 0.00 0.00 0.00 3.18
61 62 7.491372 TGGTCATACATTCAAATCTCTCGTTAC 59.509 37.037 0.00 0.00 0.00 2.50
62 63 7.491372 GGTCATACATTCAAATCTCTCGTTACA 59.509 37.037 0.00 0.00 0.00 2.41
63 64 8.869897 GTCATACATTCAAATCTCTCGTTACAA 58.130 33.333 0.00 0.00 0.00 2.41
64 65 9.599866 TCATACATTCAAATCTCTCGTTACAAT 57.400 29.630 0.00 0.00 0.00 2.71
67 68 7.752695 ACATTCAAATCTCTCGTTACAATTCC 58.247 34.615 0.00 0.00 0.00 3.01
68 69 7.607991 ACATTCAAATCTCTCGTTACAATTCCT 59.392 33.333 0.00 0.00 0.00 3.36
69 70 7.979444 TTCAAATCTCTCGTTACAATTCCTT 57.021 32.000 0.00 0.00 0.00 3.36
70 71 7.979444 TCAAATCTCTCGTTACAATTCCTTT 57.021 32.000 0.00 0.00 0.00 3.11
71 72 7.806690 TCAAATCTCTCGTTACAATTCCTTTG 58.193 34.615 0.00 0.00 41.36 2.77
72 73 6.743575 AATCTCTCGTTACAATTCCTTTGG 57.256 37.500 0.00 0.00 39.80 3.28
73 74 5.223449 TCTCTCGTTACAATTCCTTTGGT 57.777 39.130 0.00 0.00 39.80 3.67
74 75 6.349243 TCTCTCGTTACAATTCCTTTGGTA 57.651 37.500 0.00 0.00 39.80 3.25
75 76 6.942976 TCTCTCGTTACAATTCCTTTGGTAT 58.057 36.000 0.00 0.00 39.80 2.73
76 77 7.391620 TCTCTCGTTACAATTCCTTTGGTATT 58.608 34.615 0.00 0.00 39.80 1.89
77 78 7.548075 TCTCTCGTTACAATTCCTTTGGTATTC 59.452 37.037 0.00 0.00 39.80 1.75
78 79 6.596497 TCTCGTTACAATTCCTTTGGTATTCC 59.404 38.462 0.00 0.00 39.80 3.01
79 80 5.648960 TCGTTACAATTCCTTTGGTATTCCC 59.351 40.000 0.00 0.00 39.80 3.97
80 81 5.448089 CGTTACAATTCCTTTGGTATTCCCG 60.448 44.000 0.00 0.00 39.80 5.14
81 82 4.042271 ACAATTCCTTTGGTATTCCCGT 57.958 40.909 0.00 0.00 39.80 5.28
82 83 3.761752 ACAATTCCTTTGGTATTCCCGTG 59.238 43.478 0.00 0.00 39.80 4.94
83 84 2.500392 TTCCTTTGGTATTCCCGTGG 57.500 50.000 0.00 0.00 35.15 4.94
84 85 1.364269 TCCTTTGGTATTCCCGTGGT 58.636 50.000 0.00 0.00 35.15 4.16
85 86 1.003812 TCCTTTGGTATTCCCGTGGTG 59.996 52.381 0.00 0.00 35.15 4.17
86 87 0.808755 CTTTGGTATTCCCGTGGTGC 59.191 55.000 0.00 0.00 35.15 5.01
87 88 0.609681 TTTGGTATTCCCGTGGTGCC 60.610 55.000 0.00 0.00 35.15 5.01
88 89 1.780107 TTGGTATTCCCGTGGTGCCA 61.780 55.000 0.00 0.00 35.15 4.92
89 90 1.001887 GGTATTCCCGTGGTGCCAA 60.002 57.895 0.00 0.00 0.00 4.52
90 91 0.609681 GGTATTCCCGTGGTGCCAAA 60.610 55.000 0.00 0.00 0.00 3.28
91 92 0.524414 GTATTCCCGTGGTGCCAAAC 59.476 55.000 0.00 0.00 0.00 2.93
92 93 0.110678 TATTCCCGTGGTGCCAAACA 59.889 50.000 0.00 0.00 0.00 2.83
93 94 0.541764 ATTCCCGTGGTGCCAAACAT 60.542 50.000 0.00 0.00 0.00 2.71
94 95 1.175983 TTCCCGTGGTGCCAAACATC 61.176 55.000 0.00 0.00 0.00 3.06
95 96 2.560861 CCGTGGTGCCAAACATCG 59.439 61.111 0.00 0.00 28.88 3.84
96 97 2.126888 CGTGGTGCCAAACATCGC 60.127 61.111 0.00 0.00 36.49 4.58
97 98 2.902419 CGTGGTGCCAAACATCGCA 61.902 57.895 0.00 0.00 40.08 5.10
98 99 1.586028 GTGGTGCCAAACATCGCAT 59.414 52.632 0.00 0.00 39.83 4.73
99 100 0.733566 GTGGTGCCAAACATCGCATG 60.734 55.000 0.00 0.00 39.83 4.06
100 101 0.892814 TGGTGCCAAACATCGCATGA 60.893 50.000 0.00 0.00 37.33 3.07
101 102 0.457035 GGTGCCAAACATCGCATGAT 59.543 50.000 0.00 0.00 37.33 2.45
102 103 1.135024 GGTGCCAAACATCGCATGATT 60.135 47.619 0.00 0.00 37.33 2.57
103 104 2.187707 GTGCCAAACATCGCATGATTC 58.812 47.619 0.00 0.00 37.33 2.52
104 105 1.817447 TGCCAAACATCGCATGATTCA 59.183 42.857 0.00 0.00 30.49 2.57
105 106 2.230750 TGCCAAACATCGCATGATTCAA 59.769 40.909 0.00 0.00 30.49 2.69
106 107 3.252400 GCCAAACATCGCATGATTCAAA 58.748 40.909 0.00 0.00 30.49 2.69
107 108 3.866910 GCCAAACATCGCATGATTCAAAT 59.133 39.130 0.00 0.00 30.49 2.32
108 109 4.330620 GCCAAACATCGCATGATTCAAATT 59.669 37.500 0.00 0.00 30.49 1.82
109 110 5.725590 GCCAAACATCGCATGATTCAAATTG 60.726 40.000 0.00 0.00 30.49 2.32
110 111 5.349270 CCAAACATCGCATGATTCAAATTGT 59.651 36.000 0.00 0.00 30.49 2.71
111 112 6.128499 CCAAACATCGCATGATTCAAATTGTT 60.128 34.615 0.00 0.00 30.49 2.83
112 113 6.397831 AACATCGCATGATTCAAATTGTTG 57.602 33.333 0.00 0.00 32.00 3.33
113 114 5.472148 ACATCGCATGATTCAAATTGTTGT 58.528 33.333 0.00 0.00 32.39 3.32
114 115 6.619744 ACATCGCATGATTCAAATTGTTGTA 58.380 32.000 0.00 0.00 32.39 2.41
115 116 6.748658 ACATCGCATGATTCAAATTGTTGTAG 59.251 34.615 0.00 0.00 32.39 2.74
116 117 6.252967 TCGCATGATTCAAATTGTTGTAGT 57.747 33.333 0.00 0.00 36.07 2.73
117 118 6.676950 TCGCATGATTCAAATTGTTGTAGTT 58.323 32.000 0.00 0.00 36.07 2.24
118 119 7.144661 TCGCATGATTCAAATTGTTGTAGTTT 58.855 30.769 0.00 0.00 36.07 2.66
119 120 7.651304 TCGCATGATTCAAATTGTTGTAGTTTT 59.349 29.630 0.00 0.00 36.07 2.43
120 121 7.946237 CGCATGATTCAAATTGTTGTAGTTTTC 59.054 33.333 0.00 0.00 36.07 2.29
121 122 8.223100 GCATGATTCAAATTGTTGTAGTTTTCC 58.777 33.333 0.00 0.00 36.07 3.13
122 123 9.258826 CATGATTCAAATTGTTGTAGTTTTCCA 57.741 29.630 0.00 0.00 36.07 3.53
123 124 9.829507 ATGATTCAAATTGTTGTAGTTTTCCAA 57.170 25.926 0.00 0.00 36.07 3.53
124 125 9.829507 TGATTCAAATTGTTGTAGTTTTCCAAT 57.170 25.926 0.00 0.00 36.07 3.16
126 127 8.655651 TTCAAATTGTTGTAGTTTTCCAATCC 57.344 30.769 0.00 0.00 36.07 3.01
127 128 7.213678 TCAAATTGTTGTAGTTTTCCAATCCC 58.786 34.615 0.00 0.00 36.07 3.85
128 129 4.839668 TTGTTGTAGTTTTCCAATCCCG 57.160 40.909 0.00 0.00 0.00 5.14
129 130 3.150767 TGTTGTAGTTTTCCAATCCCGG 58.849 45.455 0.00 0.00 0.00 5.73
130 131 2.490509 GTTGTAGTTTTCCAATCCCGGG 59.509 50.000 16.85 16.85 0.00 5.73
131 132 1.004979 TGTAGTTTTCCAATCCCGGGG 59.995 52.381 23.50 6.77 0.00 5.73
132 133 0.626916 TAGTTTTCCAATCCCGGGGG 59.373 55.000 23.50 14.99 0.00 5.40
145 146 4.650972 TCCCGGGGGATTTAATATTCTG 57.349 45.455 23.50 0.00 39.76 3.02
146 147 4.244475 TCCCGGGGGATTTAATATTCTGA 58.756 43.478 23.50 0.00 39.76 3.27
147 148 4.042435 TCCCGGGGGATTTAATATTCTGAC 59.958 45.833 23.50 0.00 39.76 3.51
148 149 4.332828 CCGGGGGATTTAATATTCTGACC 58.667 47.826 0.00 0.00 0.00 4.02
149 150 4.000988 CGGGGGATTTAATATTCTGACCG 58.999 47.826 0.00 0.00 0.00 4.79
150 151 4.504340 CGGGGGATTTAATATTCTGACCGT 60.504 45.833 0.00 0.00 32.46 4.83
151 152 5.001874 GGGGGATTTAATATTCTGACCGTC 58.998 45.833 0.00 0.00 0.00 4.79
152 153 5.221864 GGGGGATTTAATATTCTGACCGTCT 60.222 44.000 0.00 0.00 0.00 4.18
153 154 5.701290 GGGGATTTAATATTCTGACCGTCTG 59.299 44.000 0.00 0.00 0.00 3.51
154 155 5.179555 GGGATTTAATATTCTGACCGTCTGC 59.820 44.000 0.00 0.00 0.00 4.26
155 156 5.179555 GGATTTAATATTCTGACCGTCTGCC 59.820 44.000 0.00 0.00 0.00 4.85
156 157 5.353394 TTTAATATTCTGACCGTCTGCCT 57.647 39.130 0.00 0.00 0.00 4.75
157 158 3.914426 AATATTCTGACCGTCTGCCTT 57.086 42.857 0.00 0.00 0.00 4.35
158 159 3.914426 ATATTCTGACCGTCTGCCTTT 57.086 42.857 0.00 0.00 0.00 3.11
159 160 2.568623 ATTCTGACCGTCTGCCTTTT 57.431 45.000 0.00 0.00 0.00 2.27
160 161 2.341846 TTCTGACCGTCTGCCTTTTT 57.658 45.000 0.00 0.00 0.00 1.94
161 162 3.478857 TTCTGACCGTCTGCCTTTTTA 57.521 42.857 0.00 0.00 0.00 1.52
162 163 3.695830 TCTGACCGTCTGCCTTTTTAT 57.304 42.857 0.00 0.00 0.00 1.40
163 164 4.015872 TCTGACCGTCTGCCTTTTTATT 57.984 40.909 0.00 0.00 0.00 1.40
164 165 4.000988 TCTGACCGTCTGCCTTTTTATTC 58.999 43.478 0.00 0.00 0.00 1.75
165 166 3.745799 TGACCGTCTGCCTTTTTATTCA 58.254 40.909 0.00 0.00 0.00 2.57
166 167 4.331968 TGACCGTCTGCCTTTTTATTCAT 58.668 39.130 0.00 0.00 0.00 2.57
167 168 4.155826 TGACCGTCTGCCTTTTTATTCATG 59.844 41.667 0.00 0.00 0.00 3.07
168 169 4.079253 ACCGTCTGCCTTTTTATTCATGT 58.921 39.130 0.00 0.00 0.00 3.21
169 170 4.082787 ACCGTCTGCCTTTTTATTCATGTG 60.083 41.667 0.00 0.00 0.00 3.21
170 171 3.853671 CGTCTGCCTTTTTATTCATGTGC 59.146 43.478 0.00 0.00 0.00 4.57
171 172 3.853671 GTCTGCCTTTTTATTCATGTGCG 59.146 43.478 0.00 0.00 0.00 5.34
172 173 3.505680 TCTGCCTTTTTATTCATGTGCGT 59.494 39.130 0.00 0.00 0.00 5.24
173 174 4.022416 TCTGCCTTTTTATTCATGTGCGTT 60.022 37.500 0.00 0.00 0.00 4.84
174 175 4.626042 TGCCTTTTTATTCATGTGCGTTT 58.374 34.783 0.00 0.00 0.00 3.60
175 176 5.053145 TGCCTTTTTATTCATGTGCGTTTT 58.947 33.333 0.00 0.00 0.00 2.43
176 177 5.525378 TGCCTTTTTATTCATGTGCGTTTTT 59.475 32.000 0.00 0.00 0.00 1.94
197 198 7.428282 TTTTTACAATCATGCGAGACTACAA 57.572 32.000 0.00 0.00 0.00 2.41
198 199 7.428282 TTTTACAATCATGCGAGACTACAAA 57.572 32.000 0.00 0.00 0.00 2.83
199 200 6.647212 TTACAATCATGCGAGACTACAAAG 57.353 37.500 0.00 0.00 0.00 2.77
200 201 4.820897 ACAATCATGCGAGACTACAAAGA 58.179 39.130 0.00 0.00 0.00 2.52
201 202 5.237815 ACAATCATGCGAGACTACAAAGAA 58.762 37.500 0.00 0.00 0.00 2.52
202 203 5.349817 ACAATCATGCGAGACTACAAAGAAG 59.650 40.000 0.00 0.00 0.00 2.85
203 204 4.521130 TCATGCGAGACTACAAAGAAGT 57.479 40.909 0.00 0.00 0.00 3.01
204 205 4.883083 TCATGCGAGACTACAAAGAAGTT 58.117 39.130 0.00 0.00 0.00 2.66
205 206 4.923871 TCATGCGAGACTACAAAGAAGTTC 59.076 41.667 0.00 0.00 0.00 3.01
206 207 4.585955 TGCGAGACTACAAAGAAGTTCT 57.414 40.909 0.00 0.00 0.00 3.01
207 208 5.700722 TGCGAGACTACAAAGAAGTTCTA 57.299 39.130 5.65 0.00 0.00 2.10
208 209 6.080648 TGCGAGACTACAAAGAAGTTCTAA 57.919 37.500 5.65 0.00 0.00 2.10
209 210 6.688578 TGCGAGACTACAAAGAAGTTCTAAT 58.311 36.000 5.65 0.00 0.00 1.73
210 211 7.152645 TGCGAGACTACAAAGAAGTTCTAATT 58.847 34.615 5.65 0.00 0.00 1.40
211 212 7.116376 TGCGAGACTACAAAGAAGTTCTAATTG 59.884 37.037 5.65 10.47 0.00 2.32
212 213 7.328737 GCGAGACTACAAAGAAGTTCTAATTGA 59.671 37.037 19.53 6.73 0.00 2.57
213 214 9.193133 CGAGACTACAAAGAAGTTCTAATTGAA 57.807 33.333 19.53 0.04 0.00 2.69
220 221 8.854117 ACAAAGAAGTTCTAATTGAAATGAGCT 58.146 29.630 19.53 0.00 36.30 4.09
223 224 8.190888 AGAAGTTCTAATTGAAATGAGCTACG 57.809 34.615 2.75 0.00 36.30 3.51
224 225 6.351327 AGTTCTAATTGAAATGAGCTACGC 57.649 37.500 0.00 0.00 36.30 4.42
225 226 5.874810 AGTTCTAATTGAAATGAGCTACGCA 59.125 36.000 0.00 0.00 36.30 5.24
226 227 6.371548 AGTTCTAATTGAAATGAGCTACGCAA 59.628 34.615 0.00 0.00 36.30 4.85
227 228 6.735678 TCTAATTGAAATGAGCTACGCAAA 57.264 33.333 0.00 0.00 0.00 3.68
228 229 6.775088 TCTAATTGAAATGAGCTACGCAAAG 58.225 36.000 0.00 0.00 0.00 2.77
229 230 2.900122 TGAAATGAGCTACGCAAAGC 57.100 45.000 0.00 0.00 43.11 3.51
240 241 2.279385 GCAAAGCTGCGGCAAACA 60.279 55.556 21.93 0.00 39.20 2.83
241 242 2.305127 GCAAAGCTGCGGCAAACAG 61.305 57.895 21.93 5.70 39.20 3.16
246 247 3.271014 CTGCGGCAAACAGCTCAT 58.729 55.556 3.44 0.00 44.79 2.90
247 248 1.154093 CTGCGGCAAACAGCTCATG 60.154 57.895 3.44 0.00 44.79 3.07
248 249 2.180017 GCGGCAAACAGCTCATGG 59.820 61.111 0.00 0.00 44.79 3.66
249 250 2.334946 GCGGCAAACAGCTCATGGA 61.335 57.895 0.00 0.00 44.79 3.41
250 251 1.798735 CGGCAAACAGCTCATGGAG 59.201 57.895 0.00 0.00 44.79 3.86
251 252 0.674581 CGGCAAACAGCTCATGGAGA 60.675 55.000 0.00 0.00 44.79 3.71
252 253 1.538047 GGCAAACAGCTCATGGAGAA 58.462 50.000 0.00 0.00 44.79 2.87
253 254 1.888512 GGCAAACAGCTCATGGAGAAA 59.111 47.619 0.00 0.00 44.79 2.52
254 255 2.297033 GGCAAACAGCTCATGGAGAAAA 59.703 45.455 0.00 0.00 44.79 2.29
255 256 3.243839 GGCAAACAGCTCATGGAGAAAAA 60.244 43.478 0.00 0.00 44.79 1.94
271 272 2.693267 AAAAACTAGAGCTAGCCCGG 57.307 50.000 12.13 0.00 36.66 5.73
272 273 0.178301 AAAACTAGAGCTAGCCCGGC 59.822 55.000 12.13 0.00 36.66 6.13
273 274 0.688087 AAACTAGAGCTAGCCCGGCT 60.688 55.000 18.05 18.05 43.41 5.52
274 275 0.185416 AACTAGAGCTAGCCCGGCTA 59.815 55.000 18.39 18.39 40.44 3.93
300 301 2.158645 CACGTGCGGTAACATGAATGAA 59.841 45.455 0.82 0.00 0.00 2.57
303 304 3.488489 GTGCGGTAACATGAATGAACAC 58.512 45.455 0.00 0.00 0.00 3.32
305 306 3.188254 TGCGGTAACATGAATGAACACAG 59.812 43.478 0.00 0.00 0.00 3.66
330 332 0.179094 GGGATCGTGCGGTAACATGA 60.179 55.000 0.00 0.00 39.78 3.07
331 333 1.647346 GGATCGTGCGGTAACATGAA 58.353 50.000 0.00 0.00 38.97 2.57
333 335 3.386486 GGATCGTGCGGTAACATGAATA 58.614 45.455 0.00 0.00 38.97 1.75
334 336 3.183775 GGATCGTGCGGTAACATGAATAC 59.816 47.826 0.00 2.16 38.97 1.89
370 374 1.657181 GCACGCCGTTGAAACCAAG 60.657 57.895 0.00 0.00 0.00 3.61
377 381 0.673437 CGTTGAAACCAAGGCCACAT 59.327 50.000 5.01 0.00 0.00 3.21
398 402 1.188138 GATGAATCGACGTCGCATCAC 59.812 52.381 33.08 25.54 36.81 3.06
399 403 0.800683 TGAATCGACGTCGCATCACC 60.801 55.000 32.19 16.95 39.60 4.02
401 405 2.901051 AATCGACGTCGCATCACCCC 62.901 60.000 32.19 0.00 39.60 4.95
415 420 2.115266 CCCCGAGCAAAACCAGGT 59.885 61.111 0.00 0.00 0.00 4.00
435 440 2.429930 CCTGTTCGGCTGTTCCCA 59.570 61.111 0.00 0.00 0.00 4.37
437 442 2.280524 TGTTCGGCTGTTCCCACG 60.281 61.111 0.00 0.00 0.00 4.94
440 445 3.876589 TTCGGCTGTTCCCACGCTC 62.877 63.158 0.00 0.00 0.00 5.03
441 446 4.379243 CGGCTGTTCCCACGCTCT 62.379 66.667 0.00 0.00 0.00 4.09
442 447 2.032681 GGCTGTTCCCACGCTCTT 59.967 61.111 0.00 0.00 0.00 2.85
443 448 2.328099 GGCTGTTCCCACGCTCTTG 61.328 63.158 0.00 0.00 0.00 3.02
444 449 2.328099 GCTGTTCCCACGCTCTTGG 61.328 63.158 0.00 0.00 36.26 3.61
445 450 1.071471 CTGTTCCCACGCTCTTGGT 59.929 57.895 0.00 0.00 34.44 3.67
446 451 0.951040 CTGTTCCCACGCTCTTGGTC 60.951 60.000 0.00 0.00 34.44 4.02
447 452 1.671379 GTTCCCACGCTCTTGGTCC 60.671 63.158 0.00 0.00 34.44 4.46
448 453 3.234630 TTCCCACGCTCTTGGTCCG 62.235 63.158 0.00 0.00 34.44 4.79
449 454 3.691342 CCCACGCTCTTGGTCCGA 61.691 66.667 0.00 0.00 34.44 4.55
450 455 2.432628 CCACGCTCTTGGTCCGAC 60.433 66.667 0.00 0.00 0.00 4.79
451 456 2.432628 CACGCTCTTGGTCCGACC 60.433 66.667 10.96 10.96 39.22 4.79
452 457 4.052229 ACGCTCTTGGTCCGACCG 62.052 66.667 13.02 2.33 42.58 4.79
453 458 3.744719 CGCTCTTGGTCCGACCGA 61.745 66.667 13.02 10.18 42.58 4.69
454 459 2.893398 GCTCTTGGTCCGACCGAT 59.107 61.111 13.02 0.00 42.58 4.18
455 460 1.227002 GCTCTTGGTCCGACCGATC 60.227 63.158 13.02 0.00 42.58 3.69
456 461 1.945354 GCTCTTGGTCCGACCGATCA 61.945 60.000 13.02 0.32 42.58 2.92
457 462 0.747255 CTCTTGGTCCGACCGATCAT 59.253 55.000 13.02 0.00 42.58 2.45
458 463 1.954382 CTCTTGGTCCGACCGATCATA 59.046 52.381 13.02 0.00 42.58 2.15
459 464 2.558795 CTCTTGGTCCGACCGATCATAT 59.441 50.000 13.02 0.00 42.58 1.78
460 465 2.557056 TCTTGGTCCGACCGATCATATC 59.443 50.000 13.02 0.00 42.58 1.63
461 466 1.989706 TGGTCCGACCGATCATATCA 58.010 50.000 13.02 0.00 42.58 2.15
462 467 2.525368 TGGTCCGACCGATCATATCAT 58.475 47.619 13.02 0.00 42.58 2.45
463 468 2.492088 TGGTCCGACCGATCATATCATC 59.508 50.000 13.02 0.00 42.58 2.92
464 469 2.755655 GGTCCGACCGATCATATCATCT 59.244 50.000 0.65 0.00 0.00 2.90
465 470 3.181495 GGTCCGACCGATCATATCATCTC 60.181 52.174 0.65 0.00 0.00 2.75
466 471 3.017442 TCCGACCGATCATATCATCTCC 58.983 50.000 0.00 0.00 0.00 3.71
467 472 3.020274 CCGACCGATCATATCATCTCCT 58.980 50.000 0.00 0.00 0.00 3.69
468 473 3.066064 CCGACCGATCATATCATCTCCTC 59.934 52.174 0.00 0.00 0.00 3.71
469 474 3.066064 CGACCGATCATATCATCTCCTCC 59.934 52.174 0.00 0.00 0.00 4.30
470 475 4.277476 GACCGATCATATCATCTCCTCCT 58.723 47.826 0.00 0.00 0.00 3.69
471 476 4.277476 ACCGATCATATCATCTCCTCCTC 58.723 47.826 0.00 0.00 0.00 3.71
472 477 4.017591 ACCGATCATATCATCTCCTCCTCT 60.018 45.833 0.00 0.00 0.00 3.69
473 478 4.580167 CCGATCATATCATCTCCTCCTCTC 59.420 50.000 0.00 0.00 0.00 3.20
474 479 5.439721 CGATCATATCATCTCCTCCTCTCT 58.560 45.833 0.00 0.00 0.00 3.10
475 480 5.528690 CGATCATATCATCTCCTCCTCTCTC 59.471 48.000 0.00 0.00 0.00 3.20
476 481 6.633355 CGATCATATCATCTCCTCCTCTCTCT 60.633 46.154 0.00 0.00 0.00 3.10
477 482 6.065976 TCATATCATCTCCTCCTCTCTCTC 57.934 45.833 0.00 0.00 0.00 3.20
478 483 5.792188 TCATATCATCTCCTCCTCTCTCTCT 59.208 44.000 0.00 0.00 0.00 3.10
479 484 6.275381 TCATATCATCTCCTCCTCTCTCTCTT 59.725 42.308 0.00 0.00 0.00 2.85
480 485 4.437682 TCATCTCCTCCTCTCTCTCTTC 57.562 50.000 0.00 0.00 0.00 2.87
481 486 4.047166 TCATCTCCTCCTCTCTCTCTTCT 58.953 47.826 0.00 0.00 0.00 2.85
495 500 3.338249 TCTCTTCTCCAGCGAAAAATGG 58.662 45.455 0.00 0.00 37.97 3.16
498 503 0.321210 TCTCCAGCGAAAAATGGCGA 60.321 50.000 0.00 0.00 36.47 5.54
499 504 0.734889 CTCCAGCGAAAAATGGCGAT 59.265 50.000 0.00 0.00 36.47 4.58
500 505 0.732571 TCCAGCGAAAAATGGCGATC 59.267 50.000 0.00 0.00 36.47 3.69
502 507 0.589729 CAGCGAAAAATGGCGATCCG 60.590 55.000 0.00 0.00 34.14 4.18
521 526 4.340617 TCCGCCTAAACCAAATCAAATCT 58.659 39.130 0.00 0.00 0.00 2.40
541 546 1.141657 TGAGTGCTGGCTCTCTGTTTT 59.858 47.619 20.30 0.00 37.43 2.43
542 547 1.803555 GAGTGCTGGCTCTCTGTTTTC 59.196 52.381 14.82 0.00 34.74 2.29
600 659 0.249031 GCGCAGTGGCAAGAAAAAGT 60.249 50.000 0.30 0.00 41.24 2.66
775 835 3.532155 GAGGAGCGAGCGGTGGAT 61.532 66.667 0.00 0.00 0.00 3.41
811 880 2.749621 ACCATCTCGCCAGAAAAATCAC 59.250 45.455 0.00 0.00 30.24 3.06
871 948 2.538141 CCCACTCCACCACCACCAT 61.538 63.158 0.00 0.00 0.00 3.55
934 1011 0.684479 GACCCCCTGCTCATTTTCCC 60.684 60.000 0.00 0.00 0.00 3.97
938 1015 1.684248 CCCCTGCTCATTTTCCCTCTG 60.684 57.143 0.00 0.00 0.00 3.35
943 1020 0.627986 CTCATTTTCCCTCTGCCCCT 59.372 55.000 0.00 0.00 0.00 4.79
1308 1392 1.219393 CTTCCACTTCTCGCCCTCC 59.781 63.158 0.00 0.00 0.00 4.30
2011 2095 3.324099 CTGTACGAGACCGCGCAGT 62.324 63.158 8.75 0.09 39.95 4.40
2019 2103 4.415332 ACCGCGCAGTACCTCACG 62.415 66.667 8.75 0.00 0.00 4.35
2108 2195 1.975362 CGAATAGAGCGAGCGATCAAG 59.025 52.381 10.86 0.00 32.23 3.02
2179 2267 4.593956 AGGAGGAAAAACAGAGGCTTATG 58.406 43.478 0.00 0.00 0.00 1.90
2311 2470 1.783071 TTTTTGGGTGGAGTTGGACC 58.217 50.000 0.00 0.00 0.00 4.46
2353 2512 3.896648 TTGTTTCTGCTTTGATCCGTC 57.103 42.857 0.00 0.00 0.00 4.79
2354 2513 2.151202 TGTTTCTGCTTTGATCCGTCC 58.849 47.619 0.00 0.00 0.00 4.79
2355 2514 1.128692 GTTTCTGCTTTGATCCGTCCG 59.871 52.381 0.00 0.00 0.00 4.79
2357 2516 0.389817 TCTGCTTTGATCCGTCCGTG 60.390 55.000 0.00 0.00 0.00 4.94
2358 2517 1.970917 CTGCTTTGATCCGTCCGTGC 61.971 60.000 0.00 0.00 0.00 5.34
2361 2520 1.934589 CTTTGATCCGTCCGTGCATA 58.065 50.000 0.00 0.00 0.00 3.14
2362 2521 1.860950 CTTTGATCCGTCCGTGCATAG 59.139 52.381 0.00 0.00 0.00 2.23
2363 2522 1.107945 TTGATCCGTCCGTGCATAGA 58.892 50.000 0.00 0.00 0.00 1.98
2364 2523 1.328279 TGATCCGTCCGTGCATAGAT 58.672 50.000 0.00 0.00 0.00 1.98
2378 2537 5.049818 CGTGCATAGATCATCTTCCTTTTCC 60.050 44.000 0.00 0.00 0.00 3.13
2380 2539 6.545298 GTGCATAGATCATCTTCCTTTTCCTT 59.455 38.462 0.00 0.00 0.00 3.36
2382 2541 7.284034 TGCATAGATCATCTTCCTTTTCCTTTC 59.716 37.037 0.00 0.00 0.00 2.62
2414 2579 9.210329 TCGTCAGCTATATTTTGTCAACTAAAA 57.790 29.630 0.00 0.00 0.00 1.52
2420 2585 9.783256 GCTATATTTTGTCAACTAAAAATCGGT 57.217 29.630 0.00 0.00 37.25 4.69
2431 2596 6.057321 ACTAAAAATCGGTTGGATGGAGTA 57.943 37.500 0.00 0.00 34.93 2.59
2492 2657 4.248058 CCTTTTTGGCTGAATCAATCACC 58.752 43.478 0.00 0.00 33.47 4.02
2505 2686 7.453393 TGAATCAATCACCTCAGTTTTCTACT 58.547 34.615 0.00 0.00 32.64 2.57
2506 2687 7.388776 TGAATCAATCACCTCAGTTTTCTACTG 59.611 37.037 0.00 0.00 43.53 2.74
2516 2697 4.338379 AGTTTTCTACTGCGTTTCTCCT 57.662 40.909 0.00 0.00 35.19 3.69
2517 2698 4.308265 AGTTTTCTACTGCGTTTCTCCTC 58.692 43.478 0.00 0.00 35.19 3.71
2518 2699 4.039366 AGTTTTCTACTGCGTTTCTCCTCT 59.961 41.667 0.00 0.00 35.19 3.69
2520 2701 1.738350 TCTACTGCGTTTCTCCTCTCG 59.262 52.381 0.00 0.00 0.00 4.04
2523 2704 0.523966 CTGCGTTTCTCCTCTCGTCT 59.476 55.000 0.00 0.00 0.00 4.18
2526 2707 1.467734 GCGTTTCTCCTCTCGTCTGTA 59.532 52.381 0.00 0.00 0.00 2.74
2527 2708 2.095364 GCGTTTCTCCTCTCGTCTGTAA 60.095 50.000 0.00 0.00 0.00 2.41
2533 2714 1.002888 TCCTCTCGTCTGTAACCGTCT 59.997 52.381 0.00 0.00 0.00 4.18
2625 2819 2.106332 CACCGGCCTCCACGTATC 59.894 66.667 0.00 0.00 0.00 2.24
2636 2830 1.144057 CACGTATCCTCCACCCAGC 59.856 63.158 0.00 0.00 0.00 4.85
2641 2835 2.194951 TATCCTCCACCCAGCACCCT 62.195 60.000 0.00 0.00 0.00 4.34
2652 2846 4.329545 GCACCCTTGCCCAGACGA 62.330 66.667 0.00 0.00 43.66 4.20
2685 2879 1.525619 CAAAGGTTCACGAACTCCGAC 59.474 52.381 9.63 0.00 40.94 4.79
2787 2989 3.697747 TAGGTTGTGGTCGGGGCG 61.698 66.667 0.00 0.00 0.00 6.13
2854 3056 3.055719 CCTCGGTGCGCCATGTTT 61.056 61.111 18.18 0.00 34.09 2.83
2855 3057 2.176546 CTCGGTGCGCCATGTTTG 59.823 61.111 18.18 0.00 34.09 2.93
2856 3058 3.326889 CTCGGTGCGCCATGTTTGG 62.327 63.158 18.18 0.00 46.66 3.28
2857 3059 3.669344 CGGTGCGCCATGTTTGGT 61.669 61.111 18.18 0.00 45.57 3.67
2858 3060 2.258286 GGTGCGCCATGTTTGGTC 59.742 61.111 12.58 0.00 45.57 4.02
2884 3094 1.362355 CCGCCACCGCTTTTCTTTT 59.638 52.632 0.00 0.00 0.00 2.27
2885 3095 0.663269 CCGCCACCGCTTTTCTTTTC 60.663 55.000 0.00 0.00 0.00 2.29
2896 3106 6.203915 ACCGCTTTTCTTTTCTTTGTTTTGTT 59.796 30.769 0.00 0.00 0.00 2.83
2901 3111 8.541133 TTTTCTTTTCTTTGTTTTGTTCGGAT 57.459 26.923 0.00 0.00 0.00 4.18
2902 3112 8.541133 TTTCTTTTCTTTGTTTTGTTCGGATT 57.459 26.923 0.00 0.00 0.00 3.01
2903 3113 7.749539 TCTTTTCTTTGTTTTGTTCGGATTC 57.250 32.000 0.00 0.00 0.00 2.52
2904 3114 6.470877 TCTTTTCTTTGTTTTGTTCGGATTCG 59.529 34.615 0.00 0.00 37.82 3.34
3010 3220 1.374758 CCGCCACAAGTCAGTCTCC 60.375 63.158 0.00 0.00 0.00 3.71
3022 3232 4.767255 GTCTCCCTGGCGGCAGTG 62.767 72.222 33.68 25.36 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.674754 GGGGAATCTCCAACGGCA 59.325 61.111 0.00 0.00 38.64 5.69
1 2 2.124278 GGGGGAATCTCCAACGGC 60.124 66.667 0.00 0.00 38.64 5.68
2 3 0.466189 CATGGGGGAATCTCCAACGG 60.466 60.000 0.00 0.00 38.64 4.44
3 4 1.103398 GCATGGGGGAATCTCCAACG 61.103 60.000 0.00 0.00 38.64 4.10
4 5 0.259938 AGCATGGGGGAATCTCCAAC 59.740 55.000 0.00 0.00 38.64 3.77
5 6 1.009997 AAGCATGGGGGAATCTCCAA 58.990 50.000 0.00 0.00 38.64 3.53
6 7 1.009997 AAAGCATGGGGGAATCTCCA 58.990 50.000 0.00 0.00 38.64 3.86
7 8 2.165357 AAAAGCATGGGGGAATCTCC 57.835 50.000 0.00 0.00 35.23 3.71
31 32 9.045223 CGAGAGATTTGAATGTATGACCATTTA 57.955 33.333 0.00 0.00 35.24 1.40
32 33 7.554118 ACGAGAGATTTGAATGTATGACCATTT 59.446 33.333 0.00 0.00 35.24 2.32
33 34 7.050377 ACGAGAGATTTGAATGTATGACCATT 58.950 34.615 0.00 0.00 37.74 3.16
34 35 6.586344 ACGAGAGATTTGAATGTATGACCAT 58.414 36.000 0.00 0.00 0.00 3.55
35 36 5.977635 ACGAGAGATTTGAATGTATGACCA 58.022 37.500 0.00 0.00 0.00 4.02
36 37 6.910536 AACGAGAGATTTGAATGTATGACC 57.089 37.500 0.00 0.00 0.00 4.02
37 38 8.407457 TGTAACGAGAGATTTGAATGTATGAC 57.593 34.615 0.00 0.00 0.00 3.06
38 39 8.996024 TTGTAACGAGAGATTTGAATGTATGA 57.004 30.769 0.00 0.00 0.00 2.15
41 42 8.879759 GGAATTGTAACGAGAGATTTGAATGTA 58.120 33.333 0.00 0.00 0.00 2.29
42 43 7.607991 AGGAATTGTAACGAGAGATTTGAATGT 59.392 33.333 0.00 0.00 0.00 2.71
43 44 7.978982 AGGAATTGTAACGAGAGATTTGAATG 58.021 34.615 0.00 0.00 0.00 2.67
44 45 8.567285 AAGGAATTGTAACGAGAGATTTGAAT 57.433 30.769 0.00 0.00 0.00 2.57
45 46 7.979444 AAGGAATTGTAACGAGAGATTTGAA 57.021 32.000 0.00 0.00 0.00 2.69
46 47 7.094805 CCAAAGGAATTGTAACGAGAGATTTGA 60.095 37.037 0.00 0.00 37.32 2.69
47 48 7.023575 CCAAAGGAATTGTAACGAGAGATTTG 58.976 38.462 0.00 0.00 37.32 2.32
48 49 6.715264 ACCAAAGGAATTGTAACGAGAGATTT 59.285 34.615 0.00 0.00 37.32 2.17
49 50 6.238648 ACCAAAGGAATTGTAACGAGAGATT 58.761 36.000 0.00 0.00 37.32 2.40
50 51 5.805728 ACCAAAGGAATTGTAACGAGAGAT 58.194 37.500 0.00 0.00 37.32 2.75
51 52 5.223449 ACCAAAGGAATTGTAACGAGAGA 57.777 39.130 0.00 0.00 37.32 3.10
52 53 7.201617 GGAATACCAAAGGAATTGTAACGAGAG 60.202 40.741 0.00 0.00 37.32 3.20
53 54 6.596497 GGAATACCAAAGGAATTGTAACGAGA 59.404 38.462 0.00 0.00 37.32 4.04
54 55 6.183360 GGGAATACCAAAGGAATTGTAACGAG 60.183 42.308 0.00 0.00 39.85 4.18
55 56 5.648960 GGGAATACCAAAGGAATTGTAACGA 59.351 40.000 0.00 0.00 39.85 3.85
56 57 5.448089 CGGGAATACCAAAGGAATTGTAACG 60.448 44.000 0.00 0.00 40.22 3.18
57 58 5.416639 ACGGGAATACCAAAGGAATTGTAAC 59.583 40.000 0.00 0.00 40.22 2.50
58 59 5.416326 CACGGGAATACCAAAGGAATTGTAA 59.584 40.000 0.00 0.00 40.22 2.41
59 60 4.944930 CACGGGAATACCAAAGGAATTGTA 59.055 41.667 0.00 0.00 40.22 2.41
60 61 3.761752 CACGGGAATACCAAAGGAATTGT 59.238 43.478 0.00 0.00 40.22 2.71
61 62 3.130340 CCACGGGAATACCAAAGGAATTG 59.870 47.826 0.00 0.00 40.22 2.32
62 63 3.245479 ACCACGGGAATACCAAAGGAATT 60.245 43.478 0.00 0.00 40.22 2.17
63 64 2.310647 ACCACGGGAATACCAAAGGAAT 59.689 45.455 0.00 0.00 40.22 3.01
64 65 1.706305 ACCACGGGAATACCAAAGGAA 59.294 47.619 0.00 0.00 40.22 3.36
65 66 1.003812 CACCACGGGAATACCAAAGGA 59.996 52.381 0.00 0.00 40.22 3.36
66 67 1.459450 CACCACGGGAATACCAAAGG 58.541 55.000 0.00 0.00 40.22 3.11
67 68 0.808755 GCACCACGGGAATACCAAAG 59.191 55.000 0.00 0.00 40.22 2.77
68 69 0.609681 GGCACCACGGGAATACCAAA 60.610 55.000 0.00 0.00 40.22 3.28
69 70 1.001887 GGCACCACGGGAATACCAA 60.002 57.895 0.00 0.00 40.22 3.67
70 71 1.780107 TTGGCACCACGGGAATACCA 61.780 55.000 0.00 0.00 40.22 3.25
71 72 0.609681 TTTGGCACCACGGGAATACC 60.610 55.000 0.00 0.00 0.00 2.73
72 73 0.524414 GTTTGGCACCACGGGAATAC 59.476 55.000 0.00 0.00 0.00 1.89
73 74 0.110678 TGTTTGGCACCACGGGAATA 59.889 50.000 0.00 0.00 0.00 1.75
74 75 0.541764 ATGTTTGGCACCACGGGAAT 60.542 50.000 0.00 0.00 0.00 3.01
75 76 1.152652 ATGTTTGGCACCACGGGAA 60.153 52.632 0.00 0.00 0.00 3.97
76 77 1.602323 GATGTTTGGCACCACGGGA 60.602 57.895 0.00 0.00 0.00 5.14
77 78 2.961768 GATGTTTGGCACCACGGG 59.038 61.111 0.00 0.00 0.00 5.28
78 79 2.560861 CGATGTTTGGCACCACGG 59.439 61.111 0.00 0.00 0.00 4.94
79 80 2.126888 GCGATGTTTGGCACCACG 60.127 61.111 0.00 0.00 0.00 4.94
80 81 0.733566 CATGCGATGTTTGGCACCAC 60.734 55.000 0.00 0.00 39.53 4.16
81 82 0.892814 TCATGCGATGTTTGGCACCA 60.893 50.000 0.00 0.00 39.53 4.17
82 83 0.457035 ATCATGCGATGTTTGGCACC 59.543 50.000 0.00 0.00 39.53 5.01
83 84 2.187707 GAATCATGCGATGTTTGGCAC 58.812 47.619 0.00 0.00 39.53 5.01
84 85 1.817447 TGAATCATGCGATGTTTGGCA 59.183 42.857 0.00 0.00 41.05 4.92
85 86 2.565210 TGAATCATGCGATGTTTGGC 57.435 45.000 0.00 0.00 30.13 4.52
86 87 5.349270 ACAATTTGAATCATGCGATGTTTGG 59.651 36.000 2.79 0.00 30.13 3.28
87 88 6.397831 ACAATTTGAATCATGCGATGTTTG 57.602 33.333 2.79 0.00 30.13 2.93
88 89 6.424509 ACAACAATTTGAATCATGCGATGTTT 59.575 30.769 2.79 0.00 36.48 2.83
89 90 5.927689 ACAACAATTTGAATCATGCGATGTT 59.072 32.000 2.79 0.00 36.48 2.71
90 91 5.472148 ACAACAATTTGAATCATGCGATGT 58.528 33.333 2.79 0.00 36.48 3.06
91 92 6.748658 ACTACAACAATTTGAATCATGCGATG 59.251 34.615 2.79 0.00 36.48 3.84
92 93 6.855836 ACTACAACAATTTGAATCATGCGAT 58.144 32.000 2.79 0.00 36.48 4.58
93 94 6.252967 ACTACAACAATTTGAATCATGCGA 57.747 33.333 2.79 0.00 36.48 5.10
94 95 6.932901 AACTACAACAATTTGAATCATGCG 57.067 33.333 2.79 0.00 36.48 4.73
95 96 8.223100 GGAAAACTACAACAATTTGAATCATGC 58.777 33.333 2.79 0.00 36.48 4.06
96 97 9.258826 TGGAAAACTACAACAATTTGAATCATG 57.741 29.630 2.79 0.00 36.48 3.07
97 98 9.829507 TTGGAAAACTACAACAATTTGAATCAT 57.170 25.926 2.79 0.00 36.48 2.45
98 99 9.829507 ATTGGAAAACTACAACAATTTGAATCA 57.170 25.926 2.79 0.00 36.48 2.57
100 101 9.271828 GGATTGGAAAACTACAACAATTTGAAT 57.728 29.630 2.79 0.00 36.48 2.57
101 102 7.713073 GGGATTGGAAAACTACAACAATTTGAA 59.287 33.333 2.79 0.00 36.48 2.69
102 103 7.213678 GGGATTGGAAAACTACAACAATTTGA 58.786 34.615 2.79 0.00 36.48 2.69
103 104 6.145371 CGGGATTGGAAAACTACAACAATTTG 59.855 38.462 0.00 0.00 38.83 2.32
104 105 6.220201 CGGGATTGGAAAACTACAACAATTT 58.780 36.000 0.00 0.00 32.42 1.82
105 106 5.279256 CCGGGATTGGAAAACTACAACAATT 60.279 40.000 0.00 0.00 32.42 2.32
106 107 4.219725 CCGGGATTGGAAAACTACAACAAT 59.780 41.667 0.00 0.00 34.73 2.71
107 108 3.570550 CCGGGATTGGAAAACTACAACAA 59.429 43.478 0.00 0.00 0.00 2.83
108 109 3.150767 CCGGGATTGGAAAACTACAACA 58.849 45.455 0.00 0.00 0.00 3.33
109 110 2.490509 CCCGGGATTGGAAAACTACAAC 59.509 50.000 18.48 0.00 0.00 3.32
110 111 2.555670 CCCCGGGATTGGAAAACTACAA 60.556 50.000 26.32 0.00 0.00 2.41
111 112 1.004979 CCCCGGGATTGGAAAACTACA 59.995 52.381 26.32 0.00 0.00 2.74
112 113 1.683938 CCCCCGGGATTGGAAAACTAC 60.684 57.143 26.32 0.00 37.50 2.73
113 114 0.626916 CCCCCGGGATTGGAAAACTA 59.373 55.000 26.32 0.00 37.50 2.24
114 115 1.143970 TCCCCCGGGATTGGAAAACT 61.144 55.000 26.32 0.00 39.76 2.66
115 116 1.384975 TCCCCCGGGATTGGAAAAC 59.615 57.895 26.32 0.00 39.76 2.43
116 117 3.939554 TCCCCCGGGATTGGAAAA 58.060 55.556 26.32 0.00 39.76 2.29
125 126 4.332828 GTCAGAATATTAAATCCCCCGGG 58.667 47.826 15.80 15.80 0.00 5.73
126 127 4.332828 GGTCAGAATATTAAATCCCCCGG 58.667 47.826 0.00 0.00 0.00 5.73
127 128 4.000988 CGGTCAGAATATTAAATCCCCCG 58.999 47.826 0.00 0.00 0.00 5.73
128 129 4.981812 ACGGTCAGAATATTAAATCCCCC 58.018 43.478 0.00 0.00 0.00 5.40
129 130 5.701290 CAGACGGTCAGAATATTAAATCCCC 59.299 44.000 11.27 0.00 0.00 4.81
130 131 5.179555 GCAGACGGTCAGAATATTAAATCCC 59.820 44.000 11.27 0.00 0.00 3.85
131 132 5.179555 GGCAGACGGTCAGAATATTAAATCC 59.820 44.000 11.27 0.00 0.00 3.01
132 133 5.992217 AGGCAGACGGTCAGAATATTAAATC 59.008 40.000 11.27 0.00 0.00 2.17
133 134 5.930135 AGGCAGACGGTCAGAATATTAAAT 58.070 37.500 11.27 0.00 0.00 1.40
134 135 5.353394 AGGCAGACGGTCAGAATATTAAA 57.647 39.130 11.27 0.00 0.00 1.52
135 136 5.353394 AAGGCAGACGGTCAGAATATTAA 57.647 39.130 11.27 0.00 0.00 1.40
136 137 5.353394 AAAGGCAGACGGTCAGAATATTA 57.647 39.130 11.27 0.00 0.00 0.98
137 138 3.914426 AAGGCAGACGGTCAGAATATT 57.086 42.857 11.27 0.00 0.00 1.28
138 139 3.914426 AAAGGCAGACGGTCAGAATAT 57.086 42.857 11.27 0.00 0.00 1.28
139 140 3.695830 AAAAGGCAGACGGTCAGAATA 57.304 42.857 11.27 0.00 0.00 1.75
140 141 2.568623 AAAAGGCAGACGGTCAGAAT 57.431 45.000 11.27 0.00 0.00 2.40
141 142 2.341846 AAAAAGGCAGACGGTCAGAA 57.658 45.000 11.27 0.00 0.00 3.02
142 143 3.695830 ATAAAAAGGCAGACGGTCAGA 57.304 42.857 11.27 0.00 0.00 3.27
143 144 3.751175 TGAATAAAAAGGCAGACGGTCAG 59.249 43.478 11.27 3.23 0.00 3.51
144 145 3.745799 TGAATAAAAAGGCAGACGGTCA 58.254 40.909 11.27 0.00 0.00 4.02
145 146 4.156008 ACATGAATAAAAAGGCAGACGGTC 59.844 41.667 0.00 0.00 0.00 4.79
146 147 4.079253 ACATGAATAAAAAGGCAGACGGT 58.921 39.130 0.00 0.00 0.00 4.83
147 148 4.414852 CACATGAATAAAAAGGCAGACGG 58.585 43.478 0.00 0.00 0.00 4.79
148 149 3.853671 GCACATGAATAAAAAGGCAGACG 59.146 43.478 0.00 0.00 0.00 4.18
149 150 3.853671 CGCACATGAATAAAAAGGCAGAC 59.146 43.478 0.00 0.00 0.00 3.51
150 151 3.505680 ACGCACATGAATAAAAAGGCAGA 59.494 39.130 0.00 0.00 0.00 4.26
151 152 3.836949 ACGCACATGAATAAAAAGGCAG 58.163 40.909 0.00 0.00 0.00 4.85
152 153 3.932545 ACGCACATGAATAAAAAGGCA 57.067 38.095 0.00 0.00 0.00 4.75
153 154 5.590104 AAAACGCACATGAATAAAAAGGC 57.410 34.783 0.00 0.00 0.00 4.35
173 174 7.428282 TTGTAGTCTCGCATGATTGTAAAAA 57.572 32.000 0.00 0.00 0.00 1.94
174 175 7.386573 TCTTTGTAGTCTCGCATGATTGTAAAA 59.613 33.333 0.00 0.00 0.00 1.52
175 176 6.871492 TCTTTGTAGTCTCGCATGATTGTAAA 59.129 34.615 0.00 0.00 0.00 2.01
176 177 6.394809 TCTTTGTAGTCTCGCATGATTGTAA 58.605 36.000 0.00 0.00 0.00 2.41
177 178 5.961272 TCTTTGTAGTCTCGCATGATTGTA 58.039 37.500 0.00 0.00 0.00 2.41
178 179 4.820897 TCTTTGTAGTCTCGCATGATTGT 58.179 39.130 0.00 0.00 0.00 2.71
179 180 5.349817 ACTTCTTTGTAGTCTCGCATGATTG 59.650 40.000 0.00 0.00 0.00 2.67
180 181 5.482908 ACTTCTTTGTAGTCTCGCATGATT 58.517 37.500 0.00 0.00 0.00 2.57
181 182 5.078411 ACTTCTTTGTAGTCTCGCATGAT 57.922 39.130 0.00 0.00 0.00 2.45
182 183 4.521130 ACTTCTTTGTAGTCTCGCATGA 57.479 40.909 0.00 0.00 0.00 3.07
183 184 4.926238 AGAACTTCTTTGTAGTCTCGCATG 59.074 41.667 0.00 0.00 0.00 4.06
184 185 5.140747 AGAACTTCTTTGTAGTCTCGCAT 57.859 39.130 0.00 0.00 0.00 4.73
185 186 4.585955 AGAACTTCTTTGTAGTCTCGCA 57.414 40.909 0.00 0.00 0.00 5.10
186 187 7.328737 TCAATTAGAACTTCTTTGTAGTCTCGC 59.671 37.037 0.00 0.00 0.00 5.03
187 188 8.744008 TCAATTAGAACTTCTTTGTAGTCTCG 57.256 34.615 0.00 0.00 0.00 4.04
194 195 8.854117 AGCTCATTTCAATTAGAACTTCTTTGT 58.146 29.630 0.00 0.00 35.56 2.83
197 198 8.660373 CGTAGCTCATTTCAATTAGAACTTCTT 58.340 33.333 0.00 0.00 35.56 2.52
198 199 8.190888 CGTAGCTCATTTCAATTAGAACTTCT 57.809 34.615 0.00 0.00 35.56 2.85
223 224 2.279385 TGTTTGCCGCAGCTTTGC 60.279 55.556 0.00 0.00 40.80 3.68
224 225 3.926497 CTGTTTGCCGCAGCTTTG 58.074 55.556 0.00 0.00 40.80 2.77
229 230 1.154093 CATGAGCTGTTTGCCGCAG 60.154 57.895 0.00 0.00 44.23 5.18
230 231 2.628696 CCATGAGCTGTTTGCCGCA 61.629 57.895 0.00 0.00 44.23 5.69
231 232 2.180017 CCATGAGCTGTTTGCCGC 59.820 61.111 0.00 0.00 44.23 6.53
232 233 0.674581 TCTCCATGAGCTGTTTGCCG 60.675 55.000 0.00 0.00 44.23 5.69
233 234 1.538047 TTCTCCATGAGCTGTTTGCC 58.462 50.000 0.00 0.00 44.23 4.52
234 235 3.648339 TTTTCTCCATGAGCTGTTTGC 57.352 42.857 0.00 0.00 43.29 3.68
252 253 1.407025 GCCGGGCTAGCTCTAGTTTTT 60.407 52.381 13.91 0.00 35.65 1.94
253 254 0.178301 GCCGGGCTAGCTCTAGTTTT 59.822 55.000 13.91 0.00 35.65 2.43
254 255 0.688087 AGCCGGGCTAGCTCTAGTTT 60.688 55.000 22.47 0.00 36.99 2.66
255 256 0.185416 TAGCCGGGCTAGCTCTAGTT 59.815 55.000 24.51 4.54 41.83 2.24
256 257 1.844839 TAGCCGGGCTAGCTCTAGT 59.155 57.895 24.51 0.36 41.83 2.57
257 258 4.824090 TAGCCGGGCTAGCTCTAG 57.176 61.111 24.51 5.00 41.83 2.43
264 265 3.467226 GTGCACCTAGCCGGGCTA 61.467 66.667 26.26 26.26 44.83 3.93
271 272 3.636313 TACCGCACGTGCACCTAGC 62.636 63.158 37.03 11.54 45.96 3.42
272 273 1.080366 TTACCGCACGTGCACCTAG 60.080 57.895 37.03 21.54 42.21 3.02
273 274 1.373246 GTTACCGCACGTGCACCTA 60.373 57.895 37.03 20.60 42.21 3.08
274 275 2.663852 GTTACCGCACGTGCACCT 60.664 61.111 37.03 21.60 42.21 4.00
275 276 2.322081 ATGTTACCGCACGTGCACC 61.322 57.895 37.03 20.21 42.21 5.01
276 277 1.154488 CATGTTACCGCACGTGCAC 60.154 57.895 37.03 27.49 42.21 4.57
277 278 0.880718 TTCATGTTACCGCACGTGCA 60.881 50.000 37.03 19.31 42.21 4.57
285 286 3.724716 CGCTGTGTTCATTCATGTTACCG 60.725 47.826 0.00 0.00 0.00 4.02
287 288 4.151070 CACGCTGTGTTCATTCATGTTAC 58.849 43.478 0.00 0.00 0.00 2.50
330 332 2.138320 CGCTGGCTCGATTCATGTATT 58.862 47.619 0.00 0.00 0.00 1.89
331 333 1.606480 CCGCTGGCTCGATTCATGTAT 60.606 52.381 0.00 0.00 0.00 2.29
333 335 1.522355 CCGCTGGCTCGATTCATGT 60.522 57.895 0.00 0.00 0.00 3.21
334 336 2.249535 CCCGCTGGCTCGATTCATG 61.250 63.158 1.55 0.00 0.00 3.07
370 374 0.583438 CGTCGATTCATCATGTGGCC 59.417 55.000 0.00 0.00 0.00 5.36
377 381 1.202245 TGATGCGACGTCGATTCATCA 60.202 47.619 35.10 35.10 40.95 3.07
398 402 1.530655 AACCTGGTTTTGCTCGGGG 60.531 57.895 6.18 0.00 33.83 5.73
399 403 1.659794 CAACCTGGTTTTGCTCGGG 59.340 57.895 9.90 0.00 35.60 5.14
401 405 4.633980 GCAACCTGGTTTTGCTCG 57.366 55.556 9.90 0.00 44.96 5.03
425 430 2.032681 AAGAGCGTGGGAACAGCC 59.967 61.111 0.00 0.00 44.46 4.85
426 431 2.328099 CCAAGAGCGTGGGAACAGC 61.328 63.158 0.00 0.00 44.46 4.40
427 432 0.951040 GACCAAGAGCGTGGGAACAG 60.951 60.000 7.35 0.00 44.46 3.16
428 433 1.070786 GACCAAGAGCGTGGGAACA 59.929 57.895 7.35 0.00 43.56 3.18
429 434 1.671379 GGACCAAGAGCGTGGGAAC 60.671 63.158 7.35 0.00 43.56 3.62
430 435 2.747686 GGACCAAGAGCGTGGGAA 59.252 61.111 7.35 0.00 43.56 3.97
431 436 3.691342 CGGACCAAGAGCGTGGGA 61.691 66.667 7.35 0.00 43.56 4.37
433 438 2.432628 GTCGGACCAAGAGCGTGG 60.433 66.667 0.00 0.77 44.92 4.94
434 439 2.432628 GGTCGGACCAAGAGCGTG 60.433 66.667 22.10 0.00 38.42 5.34
437 442 1.227002 GATCGGTCGGACCAAGAGC 60.227 63.158 25.80 15.02 38.47 4.09
440 445 2.296190 TGATATGATCGGTCGGACCAAG 59.704 50.000 25.80 11.46 38.47 3.61
441 446 2.312390 TGATATGATCGGTCGGACCAA 58.688 47.619 25.80 9.41 38.47 3.67
442 447 1.989706 TGATATGATCGGTCGGACCA 58.010 50.000 25.80 13.80 38.47 4.02
443 448 2.755655 AGATGATATGATCGGTCGGACC 59.244 50.000 17.38 17.38 34.05 4.46
444 449 3.181495 GGAGATGATATGATCGGTCGGAC 60.181 52.174 0.00 0.00 0.00 4.79
445 450 3.017442 GGAGATGATATGATCGGTCGGA 58.983 50.000 0.00 0.00 0.00 4.55
446 451 3.020274 AGGAGATGATATGATCGGTCGG 58.980 50.000 0.00 0.00 0.00 4.79
447 452 3.066064 GGAGGAGATGATATGATCGGTCG 59.934 52.174 0.00 0.00 0.00 4.79
448 453 4.277476 AGGAGGAGATGATATGATCGGTC 58.723 47.826 0.00 0.00 0.00 4.79
449 454 4.017591 AGAGGAGGAGATGATATGATCGGT 60.018 45.833 0.00 0.00 0.00 4.69
450 455 4.535781 AGAGGAGGAGATGATATGATCGG 58.464 47.826 0.00 0.00 0.00 4.18
451 456 5.439721 AGAGAGGAGGAGATGATATGATCG 58.560 45.833 0.00 0.00 0.00 3.69
452 457 6.666678 AGAGAGAGGAGGAGATGATATGATC 58.333 44.000 0.00 0.00 0.00 2.92
453 458 6.449368 AGAGAGAGAGGAGGAGATGATATGAT 59.551 42.308 0.00 0.00 0.00 2.45
454 459 5.792188 AGAGAGAGAGGAGGAGATGATATGA 59.208 44.000 0.00 0.00 0.00 2.15
455 460 6.070951 AGAGAGAGAGGAGGAGATGATATG 57.929 45.833 0.00 0.00 0.00 1.78
456 461 6.506770 AGAAGAGAGAGAGGAGGAGATGATAT 59.493 42.308 0.00 0.00 0.00 1.63
457 462 5.851693 AGAAGAGAGAGAGGAGGAGATGATA 59.148 44.000 0.00 0.00 0.00 2.15
458 463 4.666907 AGAAGAGAGAGAGGAGGAGATGAT 59.333 45.833 0.00 0.00 0.00 2.45
459 464 4.047166 AGAAGAGAGAGAGGAGGAGATGA 58.953 47.826 0.00 0.00 0.00 2.92
460 465 4.392940 GAGAAGAGAGAGAGGAGGAGATG 58.607 52.174 0.00 0.00 0.00 2.90
461 466 3.395941 GGAGAAGAGAGAGAGGAGGAGAT 59.604 52.174 0.00 0.00 0.00 2.75
462 467 2.777692 GGAGAAGAGAGAGAGGAGGAGA 59.222 54.545 0.00 0.00 0.00 3.71
463 468 2.509548 TGGAGAAGAGAGAGAGGAGGAG 59.490 54.545 0.00 0.00 0.00 3.69
464 469 2.509548 CTGGAGAAGAGAGAGAGGAGGA 59.490 54.545 0.00 0.00 0.00 3.71
465 470 2.936202 CTGGAGAAGAGAGAGAGGAGG 58.064 57.143 0.00 0.00 0.00 4.30
466 471 2.301346 GCTGGAGAAGAGAGAGAGGAG 58.699 57.143 0.00 0.00 0.00 3.69
467 472 1.408127 CGCTGGAGAAGAGAGAGAGGA 60.408 57.143 0.00 0.00 0.00 3.71
468 473 1.024271 CGCTGGAGAAGAGAGAGAGG 58.976 60.000 0.00 0.00 0.00 3.69
469 474 2.036958 TCGCTGGAGAAGAGAGAGAG 57.963 55.000 0.00 0.00 30.37 3.20
470 475 2.498644 TTCGCTGGAGAAGAGAGAGA 57.501 50.000 0.00 0.00 35.98 3.10
471 476 3.584406 TTTTCGCTGGAGAAGAGAGAG 57.416 47.619 0.00 0.00 35.98 3.20
472 477 4.248859 CATTTTTCGCTGGAGAAGAGAGA 58.751 43.478 0.00 0.00 35.98 3.10
473 478 3.373439 CCATTTTTCGCTGGAGAAGAGAG 59.627 47.826 0.00 0.00 35.98 3.20
474 479 3.338249 CCATTTTTCGCTGGAGAAGAGA 58.662 45.455 0.00 0.00 34.24 3.10
475 480 2.159462 GCCATTTTTCGCTGGAGAAGAG 60.159 50.000 0.00 0.00 34.24 2.85
476 481 1.812571 GCCATTTTTCGCTGGAGAAGA 59.187 47.619 0.00 0.00 34.24 2.87
477 482 1.466360 CGCCATTTTTCGCTGGAGAAG 60.466 52.381 0.00 0.00 34.61 2.85
478 483 0.521291 CGCCATTTTTCGCTGGAGAA 59.479 50.000 0.00 0.00 34.61 2.87
479 484 0.321210 TCGCCATTTTTCGCTGGAGA 60.321 50.000 0.00 0.00 38.76 3.71
480 485 0.734889 ATCGCCATTTTTCGCTGGAG 59.265 50.000 0.00 0.00 34.24 3.86
481 486 0.732571 GATCGCCATTTTTCGCTGGA 59.267 50.000 0.00 0.00 34.24 3.86
498 503 4.956075 AGATTTGATTTGGTTTAGGCGGAT 59.044 37.500 0.00 0.00 0.00 4.18
499 504 4.157656 CAGATTTGATTTGGTTTAGGCGGA 59.842 41.667 0.00 0.00 0.00 5.54
500 505 4.157656 TCAGATTTGATTTGGTTTAGGCGG 59.842 41.667 0.00 0.00 0.00 6.13
502 507 6.095377 CACTCAGATTTGATTTGGTTTAGGC 58.905 40.000 0.00 0.00 31.68 3.93
503 508 6.071728 AGCACTCAGATTTGATTTGGTTTAGG 60.072 38.462 0.00 0.00 31.68 2.69
504 509 6.805271 CAGCACTCAGATTTGATTTGGTTTAG 59.195 38.462 0.00 0.00 31.68 1.85
505 510 6.294675 CCAGCACTCAGATTTGATTTGGTTTA 60.295 38.462 0.00 0.00 31.68 2.01
506 511 5.510179 CCAGCACTCAGATTTGATTTGGTTT 60.510 40.000 0.00 0.00 31.68 3.27
521 526 0.761187 AAACAGAGAGCCAGCACTCA 59.239 50.000 17.48 0.00 39.26 3.41
569 628 2.974148 CTGCGCTGCCAGTGTTCA 60.974 61.111 9.73 0.00 0.00 3.18
592 651 3.434299 CGTGTACGGCCATTACTTTTTCT 59.566 43.478 2.24 0.00 35.37 2.52
811 880 1.873270 GCTTTGGTGCGGGTTTAGGG 61.873 60.000 0.00 0.00 0.00 3.53
943 1020 3.430497 CGAGGAGGAGGAGGGGGA 61.430 72.222 0.00 0.00 0.00 4.81
989 1073 2.125512 GCTCCATGGTTCGCTCGT 60.126 61.111 12.58 0.00 0.00 4.18
1677 1761 1.726265 GTAGGACACGTAGAGGCGG 59.274 63.158 0.00 0.00 35.98 6.13
2179 2267 7.229106 AGCACTAGTAGTACTCCATTAGCTAAC 59.771 40.741 8.70 0.00 0.00 2.34
2311 2470 3.818787 GAACCCAGCCTGCATGCG 61.819 66.667 14.09 7.87 36.02 4.73
2353 2512 3.674528 AGGAAGATGATCTATGCACGG 57.325 47.619 0.00 0.00 0.00 4.94
2354 2513 5.049818 GGAAAAGGAAGATGATCTATGCACG 60.050 44.000 0.00 0.00 0.00 5.34
2355 2514 6.060788 AGGAAAAGGAAGATGATCTATGCAC 58.939 40.000 0.00 0.00 0.00 4.57
2357 2516 7.284034 TGAAAGGAAAAGGAAGATGATCTATGC 59.716 37.037 0.00 0.00 0.00 3.14
2358 2517 8.743085 TGAAAGGAAAAGGAAGATGATCTATG 57.257 34.615 0.00 0.00 0.00 2.23
2361 2520 7.180663 ACATGAAAGGAAAAGGAAGATGATCT 58.819 34.615 0.00 0.00 0.00 2.75
2362 2521 7.401955 ACATGAAAGGAAAAGGAAGATGATC 57.598 36.000 0.00 0.00 0.00 2.92
2363 2522 9.129532 GATACATGAAAGGAAAAGGAAGATGAT 57.870 33.333 0.00 0.00 0.00 2.45
2364 2523 7.280876 CGATACATGAAAGGAAAAGGAAGATGA 59.719 37.037 0.00 0.00 0.00 2.92
2378 2537 9.803130 CAAAATATAGCTGACGATACATGAAAG 57.197 33.333 0.00 0.00 0.00 2.62
2380 2539 8.887036 ACAAAATATAGCTGACGATACATGAA 57.113 30.769 0.00 0.00 0.00 2.57
2382 2541 8.298030 TGACAAAATATAGCTGACGATACATG 57.702 34.615 0.00 0.00 0.00 3.21
2414 2579 4.164221 ACAAGATACTCCATCCAACCGATT 59.836 41.667 0.00 0.00 33.75 3.34
2420 2585 4.009675 GTGCAACAAGATACTCCATCCAA 58.990 43.478 0.00 0.00 36.32 3.53
2505 2686 0.241213 CAGACGAGAGGAGAAACGCA 59.759 55.000 0.00 0.00 0.00 5.24
2506 2687 0.241481 ACAGACGAGAGGAGAAACGC 59.759 55.000 0.00 0.00 0.00 4.84
2507 2688 3.490399 GTTACAGACGAGAGGAGAAACG 58.510 50.000 0.00 0.00 0.00 3.60
2508 2689 3.670091 CGGTTACAGACGAGAGGAGAAAC 60.670 52.174 0.00 0.00 0.00 2.78
2509 2690 2.486982 CGGTTACAGACGAGAGGAGAAA 59.513 50.000 0.00 0.00 0.00 2.52
2510 2691 2.082231 CGGTTACAGACGAGAGGAGAA 58.918 52.381 0.00 0.00 0.00 2.87
2511 2692 1.002888 ACGGTTACAGACGAGAGGAGA 59.997 52.381 0.00 0.00 0.00 3.71
2512 2693 1.397692 GACGGTTACAGACGAGAGGAG 59.602 57.143 0.00 0.00 0.00 3.69
2513 2694 1.002888 AGACGGTTACAGACGAGAGGA 59.997 52.381 0.00 0.00 0.00 3.71
2514 2695 1.130749 CAGACGGTTACAGACGAGAGG 59.869 57.143 0.00 0.00 0.00 3.69
2515 2696 1.805345 ACAGACGGTTACAGACGAGAG 59.195 52.381 0.00 0.00 0.00 3.20
2516 2697 1.534163 CACAGACGGTTACAGACGAGA 59.466 52.381 0.00 0.00 0.00 4.04
2517 2698 1.266175 ACACAGACGGTTACAGACGAG 59.734 52.381 0.00 0.00 0.00 4.18
2518 2699 1.002142 CACACAGACGGTTACAGACGA 60.002 52.381 0.00 0.00 0.00 4.20
2520 2701 2.503920 ACACACAGACGGTTACAGAC 57.496 50.000 0.00 0.00 0.00 3.51
2523 2704 2.281517 CCAAACACACAGACGGTTACA 58.718 47.619 0.00 0.00 0.00 2.41
2526 2707 1.711060 CGCCAAACACACAGACGGTT 61.711 55.000 0.00 0.00 0.00 4.44
2527 2708 2.177580 CGCCAAACACACAGACGGT 61.178 57.895 0.00 0.00 0.00 4.83
2533 2714 2.039818 TTCTTACCGCCAAACACACA 57.960 45.000 0.00 0.00 0.00 3.72
2625 2819 3.260100 AAGGGTGCTGGGTGGAGG 61.260 66.667 0.00 0.00 0.00 4.30
2636 2830 2.358737 GTCGTCTGGGCAAGGGTG 60.359 66.667 0.00 0.00 0.00 4.61
2641 2835 1.118965 TTCCTCTGTCGTCTGGGCAA 61.119 55.000 0.00 0.00 0.00 4.52
2652 2846 1.439543 ACCTTTGGAGCTTCCTCTGT 58.560 50.000 0.00 0.00 37.46 3.41
2708 2902 4.047125 ACCTGCCATTGGGACGGG 62.047 66.667 4.53 5.76 40.52 5.28
2709 2903 2.751436 CACCTGCCATTGGGACGG 60.751 66.667 4.53 7.85 35.59 4.79
2728 2922 4.206697 AGATCCGATCTCAGGGCC 57.793 61.111 4.96 0.00 33.42 5.80
2787 2989 0.110823 GTTGTGTTGCACCGATCGAC 60.111 55.000 18.66 6.83 32.73 4.20
2838 3040 2.176546 CAAACATGGCGCACCGAG 59.823 61.111 10.83 0.00 39.70 4.63
2840 3042 3.609214 GACCAAACATGGCGCACCG 62.609 63.158 10.83 0.00 39.70 4.94
2841 3043 2.258286 GACCAAACATGGCGCACC 59.742 61.111 10.83 0.00 0.00 5.01
2842 3044 2.258286 GGACCAAACATGGCGCAC 59.742 61.111 10.83 0.00 0.00 5.34
2844 3046 4.776647 GCGGACCAAACATGGCGC 62.777 66.667 0.00 0.00 34.44 6.53
2845 3047 4.114997 GGCGGACCAAACATGGCG 62.115 66.667 0.00 0.00 35.26 5.69
2846 3048 3.758931 GGGCGGACCAAACATGGC 61.759 66.667 0.00 0.00 39.85 4.40
2847 3049 3.439540 CGGGCGGACCAAACATGG 61.440 66.667 0.00 0.00 40.22 3.66
2848 3050 4.114997 GCGGGCGGACCAAACATG 62.115 66.667 0.00 0.00 40.22 3.21
2879 3089 6.470877 CGAATCCGAACAAAACAAAGAAAAGA 59.529 34.615 0.00 0.00 38.22 2.52
2884 3094 3.878103 TCCGAATCCGAACAAAACAAAGA 59.122 39.130 0.00 0.00 38.22 2.52
2885 3095 4.217754 TCCGAATCCGAACAAAACAAAG 57.782 40.909 0.00 0.00 38.22 2.77
2896 3106 1.449601 GCCAGCTTTCCGAATCCGA 60.450 57.895 0.00 0.00 38.22 4.55
2901 3111 2.672996 GGCAGCCAGCTTTCCGAA 60.673 61.111 6.55 0.00 44.79 4.30
2902 3112 3.952508 TGGCAGCCAGCTTTCCGA 61.953 61.111 11.22 0.00 44.79 4.55
2903 3113 3.741476 GTGGCAGCCAGCTTTCCG 61.741 66.667 16.83 0.00 44.79 4.30
2926 3136 1.000171 CAGAAAAGCAAAGGACAGGCC 60.000 52.381 0.00 0.00 0.00 5.19
3022 3232 4.874396 GGATATTTTCGATACGATTCCCCC 59.126 45.833 0.00 0.00 35.23 5.40
3073 3289 3.103911 GCCGACTGACACGAACGG 61.104 66.667 0.00 0.00 45.26 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.