Multiple sequence alignment - TraesCS4B01G331800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G331800 chr4B 100.000 5317 0 0 759 6075 622116815 622111499 0.000000e+00 9819.0
1 TraesCS4B01G331800 chr4B 100.000 308 0 0 1 308 622117573 622117266 2.460000e-158 569.0
2 TraesCS4B01G331800 chr4B 98.438 128 2 0 2578 2705 82019122 82019249 6.130000e-55 226.0
3 TraesCS4B01G331800 chr4B 95.714 140 6 0 2566 2705 107450730 107450869 6.130000e-55 226.0
4 TraesCS4B01G331800 chr4B 94.667 75 4 0 2377 2451 622115164 622115090 3.850000e-22 117.0
5 TraesCS4B01G331800 chr4B 94.667 75 4 0 2410 2484 622115197 622115123 3.850000e-22 117.0
6 TraesCS4B01G331800 chr4D 95.460 2643 83 20 2698 5319 487100724 487098098 0.000000e+00 4181.0
7 TraesCS4B01G331800 chr4D 92.293 1609 85 17 863 2451 487102505 487100916 0.000000e+00 2248.0
8 TraesCS4B01G331800 chr4D 94.009 701 40 2 5371 6070 487098099 487097400 0.000000e+00 1061.0
9 TraesCS4B01G331800 chr4D 92.748 262 17 1 1 260 487103403 487103142 1.600000e-100 377.0
10 TraesCS4B01G331800 chr4D 94.355 124 7 0 2410 2533 487100990 487100867 2.230000e-44 191.0
11 TraesCS4B01G331800 chr4D 98.039 51 1 0 5315 5365 473813976 473814026 8.390000e-14 89.8
12 TraesCS4B01G331800 chr4D 88.235 68 2 4 759 826 487102562 487102501 6.530000e-10 76.8
13 TraesCS4B01G331800 chr5A 96.154 1222 41 5 2703 3920 668161296 668160077 0.000000e+00 1991.0
14 TraesCS4B01G331800 chr5A 93.006 1244 59 13 3919 5142 668159953 668158718 0.000000e+00 1790.0
15 TraesCS4B01G331800 chr5A 92.252 1110 62 7 862 1953 668163067 668161964 0.000000e+00 1552.0
16 TraesCS4B01G331800 chr5A 91.779 596 35 8 5483 6070 668158604 668158015 0.000000e+00 817.0
17 TraesCS4B01G331800 chr5A 88.693 398 41 3 2022 2418 668161907 668161513 3.290000e-132 483.0
18 TraesCS4B01G331800 chr5A 91.150 226 19 1 1 225 668163657 668163432 7.650000e-79 305.0
19 TraesCS4B01G331800 chr5A 94.286 105 4 2 2443 2547 668161553 668161451 6.300000e-35 159.0
20 TraesCS4B01G331800 chr5A 92.453 53 0 3 2402 2451 668161564 668161513 8.450000e-09 73.1
21 TraesCS4B01G331800 chr7B 99.213 127 1 0 2578 2704 395246350 395246224 4.740000e-56 230.0
22 TraesCS4B01G331800 chr5B 97.727 132 3 0 2575 2706 345346728 345346859 1.700000e-55 228.0
23 TraesCS4B01G331800 chr5B 95.035 141 7 0 2565 2705 224325523 224325663 7.930000e-54 222.0
24 TraesCS4B01G331800 chrUn 95.139 144 4 3 2578 2719 191163434 191163292 2.200000e-54 224.0
25 TraesCS4B01G331800 chr3B 97.692 130 3 0 2578 2707 106972710 106972581 2.200000e-54 224.0
26 TraesCS4B01G331800 chr3B 95.139 144 4 3 2578 2719 778740081 778739939 2.200000e-54 224.0
27 TraesCS4B01G331800 chr1B 97.692 130 3 0 2578 2707 409879935 409879806 2.200000e-54 224.0
28 TraesCS4B01G331800 chr3D 98.039 51 1 0 5318 5368 443720484 443720534 8.390000e-14 89.8
29 TraesCS4B01G331800 chr3D 97.959 49 1 0 5317 5365 361165351 361165303 1.080000e-12 86.1
30 TraesCS4B01G331800 chr6D 96.226 53 2 0 5313 5365 356602728 356602676 3.020000e-13 87.9
31 TraesCS4B01G331800 chr4A 97.917 48 1 0 5318 5365 734367082 734367035 3.900000e-12 84.2
32 TraesCS4B01G331800 chr2B 96.078 51 2 0 5315 5365 546587738 546587788 3.900000e-12 84.2
33 TraesCS4B01G331800 chr3A 92.727 55 4 0 5311 5365 480109026 480108972 5.050000e-11 80.5
34 TraesCS4B01G331800 chr3A 84.722 72 9 2 5315 5385 638911011 638911081 3.040000e-08 71.3
35 TraesCS4B01G331800 chr5D 85.915 71 6 4 5294 5363 266749474 266749407 8.450000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G331800 chr4B 622111499 622117573 6074 True 2655.5000 9819 97.333500 1 6075 4 chr4B.!!$R1 6074
1 TraesCS4B01G331800 chr4D 487097400 487103403 6003 True 1355.8000 4181 92.850000 1 6070 6 chr4D.!!$R1 6069
2 TraesCS4B01G331800 chr5A 668158015 668163657 5642 True 896.2625 1991 92.471625 1 6070 8 chr5A.!!$R1 6069

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
276 280 0.107831 TGAAACAAGGGGTGAGGTCG 59.892 55.0 0.0 0.0 0.00 4.79 F
277 281 0.108019 GAAACAAGGGGTGAGGTCGT 59.892 55.0 0.0 0.0 0.00 4.34 F
278 282 0.179029 AAACAAGGGGTGAGGTCGTG 60.179 55.0 0.0 0.0 0.00 4.35 F
303 307 0.249657 GGCCATGTCTAGAAGCTCGG 60.250 60.0 0.0 0.0 0.00 4.63 F
304 308 0.461961 GCCATGTCTAGAAGCTCGGT 59.538 55.0 0.0 0.0 0.00 4.69 F
307 311 0.461961 ATGTCTAGAAGCTCGGTGCC 59.538 55.0 0.0 0.0 44.23 5.01 F
2255 2393 0.611896 CCCTGGTTGATTGTCCCCAC 60.612 60.0 0.0 0.0 0.00 4.61 F
2591 2853 0.388294 GGATTTACTCCCTCCGTCCG 59.612 60.0 0.0 0.0 38.19 4.79 F
4391 4817 0.183731 GGTTCCCAGCCCTATCTTGG 59.816 60.0 0.0 0.0 0.00 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2177 2315 0.115349 ACTGTGCCCTCTGGAGTAGT 59.885 55.000 0.00 0.00 0.00 2.73 R
2251 2389 0.961019 CATAATGGATTGCCGGTGGG 59.039 55.000 1.90 0.00 36.79 4.61 R
2277 2415 2.324330 CGTGGCATTCGGAGTGCAA 61.324 57.895 24.07 12.83 44.25 4.08 R
2316 2454 4.154195 AGCATTTGGTCAAAGTCGTACATC 59.846 41.667 2.55 0.00 33.32 3.06 R
2354 2493 7.383300 GGGCATTATCGTAAGTCGTATAACTTT 59.617 37.037 0.00 0.00 40.01 2.66 R
2372 2511 3.509575 TCTTTGAAGCGTTTGGGCATTAT 59.490 39.130 0.00 0.00 34.64 1.28 R
3973 4378 1.271325 TGCACCATCCTGTAACACCAG 60.271 52.381 0.00 0.00 0.00 4.00 R
4493 4919 3.895232 AAGCTCATATGTCCTCACGTT 57.105 42.857 1.90 0.00 0.00 3.99 R
5707 6138 1.300963 GCCCTCACAGCTGGAATGA 59.699 57.895 19.93 11.88 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 3.747854 TGCAAAAATGTTGAGGCATGA 57.252 38.095 0.00 0.00 0.00 3.07
75 76 4.669206 AAATGTTGAGGCATGACAAACA 57.331 36.364 18.81 18.81 0.00 2.83
98 99 8.253867 ACATAGATACAATTTTTCCATGGCAT 57.746 30.769 6.96 0.00 0.00 4.40
143 144 1.066152 GAGGGAGCGATGGCAATTTTC 59.934 52.381 1.50 0.00 43.41 2.29
174 176 4.018050 ACTGGAATGTAAGGGAGCAGAAAT 60.018 41.667 0.00 0.00 0.00 2.17
220 222 1.836802 TGTGGTATGCCTCTATGTGCA 59.163 47.619 0.16 0.00 42.52 4.57
250 254 0.730155 CGCATGCATGTGGTGTGAAC 60.730 55.000 28.76 8.49 34.78 3.18
253 257 1.881324 CATGCATGTGGTGTGAACTGA 59.119 47.619 18.91 0.00 0.00 3.41
260 264 3.615155 TGTGGTGTGAACTGAATGTGAA 58.385 40.909 0.00 0.00 0.00 3.18
261 265 4.013050 TGTGGTGTGAACTGAATGTGAAA 58.987 39.130 0.00 0.00 0.00 2.69
262 266 4.142491 TGTGGTGTGAACTGAATGTGAAAC 60.142 41.667 0.00 0.00 37.35 2.78
274 278 3.821306 GTGAAACAAGGGGTGAGGT 57.179 52.632 0.00 0.00 36.32 3.85
275 279 1.605753 GTGAAACAAGGGGTGAGGTC 58.394 55.000 0.00 0.00 36.32 3.85
276 280 0.107831 TGAAACAAGGGGTGAGGTCG 59.892 55.000 0.00 0.00 0.00 4.79
277 281 0.108019 GAAACAAGGGGTGAGGTCGT 59.892 55.000 0.00 0.00 0.00 4.34
278 282 0.179029 AAACAAGGGGTGAGGTCGTG 60.179 55.000 0.00 0.00 0.00 4.35
279 283 2.358737 CAAGGGGTGAGGTCGTGC 60.359 66.667 0.00 0.00 0.00 5.34
280 284 2.847234 AAGGGGTGAGGTCGTGCA 60.847 61.111 0.00 0.00 0.00 4.57
281 285 2.224159 AAGGGGTGAGGTCGTGCAT 61.224 57.895 0.00 0.00 0.00 3.96
282 286 0.907704 AAGGGGTGAGGTCGTGCATA 60.908 55.000 0.00 0.00 0.00 3.14
283 287 0.691078 AGGGGTGAGGTCGTGCATAT 60.691 55.000 0.00 0.00 0.00 1.78
284 288 0.532862 GGGGTGAGGTCGTGCATATG 60.533 60.000 0.00 0.00 0.00 1.78
285 289 0.532862 GGGTGAGGTCGTGCATATGG 60.533 60.000 4.56 0.00 0.00 2.74
286 290 1.160329 GGTGAGGTCGTGCATATGGC 61.160 60.000 4.56 0.00 45.13 4.40
287 291 1.146041 TGAGGTCGTGCATATGGCC 59.854 57.895 4.56 0.00 43.89 5.36
288 292 1.146041 GAGGTCGTGCATATGGCCA 59.854 57.895 8.56 8.56 40.18 5.36
289 293 0.250467 GAGGTCGTGCATATGGCCAT 60.250 55.000 24.45 24.45 40.18 4.40
290 294 0.535780 AGGTCGTGCATATGGCCATG 60.536 55.000 29.04 15.61 40.18 3.66
291 295 0.819259 GGTCGTGCATATGGCCATGT 60.819 55.000 29.04 19.88 43.89 3.21
292 296 0.588252 GTCGTGCATATGGCCATGTC 59.412 55.000 29.04 16.38 43.89 3.06
293 297 0.469494 TCGTGCATATGGCCATGTCT 59.531 50.000 29.04 9.95 43.89 3.41
294 298 1.691434 TCGTGCATATGGCCATGTCTA 59.309 47.619 29.04 8.65 43.89 2.59
295 299 2.071540 CGTGCATATGGCCATGTCTAG 58.928 52.381 29.04 11.10 43.89 2.43
296 300 2.289010 CGTGCATATGGCCATGTCTAGA 60.289 50.000 29.04 7.36 43.89 2.43
297 301 3.743521 GTGCATATGGCCATGTCTAGAA 58.256 45.455 29.04 6.52 43.89 2.10
298 302 3.750130 GTGCATATGGCCATGTCTAGAAG 59.250 47.826 29.04 9.59 43.89 2.85
299 303 2.746362 GCATATGGCCATGTCTAGAAGC 59.254 50.000 29.04 15.77 36.11 3.86
300 304 3.558746 GCATATGGCCATGTCTAGAAGCT 60.559 47.826 29.04 0.00 36.11 3.74
301 305 2.926778 ATGGCCATGTCTAGAAGCTC 57.073 50.000 20.04 0.00 0.00 4.09
302 306 0.461548 TGGCCATGTCTAGAAGCTCG 59.538 55.000 0.00 0.00 0.00 5.03
303 307 0.249657 GGCCATGTCTAGAAGCTCGG 60.250 60.000 0.00 0.00 0.00 4.63
304 308 0.461961 GCCATGTCTAGAAGCTCGGT 59.538 55.000 0.00 0.00 0.00 4.69
305 309 1.804372 GCCATGTCTAGAAGCTCGGTG 60.804 57.143 0.00 0.00 0.00 4.94
306 310 1.565305 CATGTCTAGAAGCTCGGTGC 58.435 55.000 0.00 0.00 43.29 5.01
307 311 0.461961 ATGTCTAGAAGCTCGGTGCC 59.538 55.000 0.00 0.00 44.23 5.01
828 914 9.901172 TTTTTAGAAGAAGAACCAACTACTCTT 57.099 29.630 0.00 0.00 32.11 2.85
829 915 9.901172 TTTTAGAAGAAGAACCAACTACTCTTT 57.099 29.630 0.00 0.00 29.59 2.52
830 916 9.901172 TTTAGAAGAAGAACCAACTACTCTTTT 57.099 29.630 0.00 0.00 29.59 2.27
831 917 9.901172 TTAGAAGAAGAACCAACTACTCTTTTT 57.099 29.630 0.00 0.00 29.59 1.94
861 947 9.620660 TTTTTGAGTTGAAAGAACAAACTACTC 57.379 29.630 0.00 0.00 36.35 2.59
919 1005 3.403038 CCCTCACGTCCATATGAAATCC 58.597 50.000 3.65 0.00 0.00 3.01
948 1034 3.926058 TTCTAGCCCACCTAAATCACC 57.074 47.619 0.00 0.00 0.00 4.02
952 1038 1.285078 AGCCCACCTAAATCACCTTCC 59.715 52.381 0.00 0.00 0.00 3.46
1072 1158 4.465446 CTCCCGCTCCTCCTCCCA 62.465 72.222 0.00 0.00 0.00 4.37
1098 1184 2.386935 CCCCAATCCTCCACCCTCC 61.387 68.421 0.00 0.00 0.00 4.30
1278 1379 4.698625 AGCCTTCGAGACCCCCGT 62.699 66.667 0.00 0.00 0.00 5.28
1605 1706 3.059982 CGAGGTGAGGCTGGACAA 58.940 61.111 0.00 0.00 0.00 3.18
1658 1759 3.144193 CGCTCGAGGAGAAGCCCT 61.144 66.667 15.58 0.00 39.77 5.19
1682 1783 1.453379 CCGGAGAAGGTCGAGGCTA 60.453 63.158 0.00 0.00 0.00 3.93
1686 1787 1.378124 GAGAAGGTCGAGGCTACGCT 61.378 60.000 0.00 0.00 0.00 5.07
1797 1898 1.482182 CAGTAGCCAGTATGTGCCAGA 59.518 52.381 0.00 0.00 33.57 3.86
1856 1962 9.726438 AGTCAACTTCTGTTTTGCTATACTAAT 57.274 29.630 0.00 0.00 33.52 1.73
1878 1984 7.437713 AATTTTTCTTTCAGAACCCTTTCCT 57.562 32.000 0.00 0.00 33.26 3.36
1897 2010 7.121168 CCTTTCCTTTGTTGATAATGTGAGCTA 59.879 37.037 0.00 0.00 0.00 3.32
1898 2011 7.615582 TTCCTTTGTTGATAATGTGAGCTAG 57.384 36.000 0.00 0.00 0.00 3.42
1899 2012 6.711277 TCCTTTGTTGATAATGTGAGCTAGT 58.289 36.000 0.00 0.00 0.00 2.57
1944 2065 3.630312 ACAGAAATGTTGCGTGGTAGTTT 59.370 39.130 0.00 0.00 0.00 2.66
1950 2071 1.000717 GTTGCGTGGTAGTTTGCCAAT 60.001 47.619 0.00 0.00 37.81 3.16
1974 2095 2.163818 TCAACCCTGTGCTAGAAACG 57.836 50.000 0.00 0.00 0.00 3.60
1990 2111 3.927142 AGAAACGAAGCCGAATGAAGTAG 59.073 43.478 0.00 0.00 39.50 2.57
2045 2183 8.403236 TGCTGAAAATGTGATCTATCATTGAAG 58.597 33.333 10.37 9.56 39.30 3.02
2126 2264 6.687081 TGGAATTTATATGTCGGGACAAAC 57.313 37.500 5.50 0.00 45.41 2.93
2168 2306 3.363575 GCATGTTGTTTGAGCATTGCAAG 60.364 43.478 11.91 0.00 0.00 4.01
2177 2315 7.656412 TGTTTGAGCATTGCAAGTTTATTCTA 58.344 30.769 11.91 0.00 0.00 2.10
2182 2320 7.824289 TGAGCATTGCAAGTTTATTCTACTACT 59.176 33.333 11.91 0.00 0.00 2.57
2205 2343 3.368531 CCAGAGGGCACAGTACTAAACTC 60.369 52.174 0.00 0.00 35.76 3.01
2251 2389 4.164221 TCTCTTATCCCTGGTTGATTGTCC 59.836 45.833 0.00 0.00 0.00 4.02
2255 2393 0.611896 CCCTGGTTGATTGTCCCCAC 60.612 60.000 0.00 0.00 0.00 4.61
2277 2415 4.527816 ACCGGCAATCCATTATGCATTATT 59.472 37.500 3.54 0.00 44.32 1.40
2316 2454 6.083630 CACGTTATGAATTTGTTGGTACTGG 58.916 40.000 0.00 0.00 0.00 4.00
2350 2489 6.839124 TTGACCAAATGCTCAGAATAACAT 57.161 33.333 0.00 0.00 0.00 2.71
2354 2493 7.039853 TGACCAAATGCTCAGAATAACATTTCA 60.040 33.333 0.00 0.00 39.92 2.69
2372 2511 8.746922 ACATTTCAAAGTTATACGACTTACGA 57.253 30.769 0.00 0.00 45.77 3.43
2406 2545 7.724305 AACGCTTCAAAGATAGTCAACTTAA 57.276 32.000 0.00 0.00 0.00 1.85
2433 2572 2.159310 CCAAACGCTTCAAAGTTGGTCA 60.159 45.455 0.00 0.00 0.00 4.02
2434 2573 3.506810 CAAACGCTTCAAAGTTGGTCAA 58.493 40.909 0.00 0.00 0.00 3.18
2435 2574 2.844122 ACGCTTCAAAGTTGGTCAAC 57.156 45.000 5.76 5.76 41.45 3.18
2446 2585 3.297830 GTTGGTCAACTTACATTGCCC 57.702 47.619 6.59 0.00 38.25 5.36
2447 2586 2.625790 GTTGGTCAACTTACATTGCCCA 59.374 45.455 6.59 0.00 35.85 5.36
2448 2587 2.950781 TGGTCAACTTACATTGCCCAA 58.049 42.857 0.00 0.00 34.75 4.12
2449 2588 3.300388 TGGTCAACTTACATTGCCCAAA 58.700 40.909 0.00 0.00 34.75 3.28
2450 2589 3.068873 TGGTCAACTTACATTGCCCAAAC 59.931 43.478 0.00 0.00 34.75 2.93
2451 2590 3.305110 GTCAACTTACATTGCCCAAACG 58.695 45.455 0.00 0.00 0.00 3.60
2452 2591 2.058057 CAACTTACATTGCCCAAACGC 58.942 47.619 0.00 0.00 0.00 4.84
2453 2592 1.616159 ACTTACATTGCCCAAACGCT 58.384 45.000 0.00 0.00 0.00 5.07
2454 2593 1.960689 ACTTACATTGCCCAAACGCTT 59.039 42.857 0.00 0.00 0.00 4.68
2455 2594 2.030274 ACTTACATTGCCCAAACGCTTC 60.030 45.455 0.00 0.00 0.00 3.86
2456 2595 1.610363 TACATTGCCCAAACGCTTCA 58.390 45.000 0.00 0.00 0.00 3.02
2457 2596 0.749649 ACATTGCCCAAACGCTTCAA 59.250 45.000 0.00 0.00 0.00 2.69
2458 2597 1.137872 ACATTGCCCAAACGCTTCAAA 59.862 42.857 0.00 0.00 0.00 2.69
2459 2598 1.794116 CATTGCCCAAACGCTTCAAAG 59.206 47.619 0.00 0.00 0.00 2.77
2460 2599 0.820871 TTGCCCAAACGCTTCAAAGT 59.179 45.000 0.00 0.00 0.00 2.66
2461 2600 0.820871 TGCCCAAACGCTTCAAAGTT 59.179 45.000 0.00 0.00 0.00 2.66
2462 2601 1.208259 GCCCAAACGCTTCAAAGTTG 58.792 50.000 0.00 0.00 0.00 3.16
2463 2602 1.851658 CCCAAACGCTTCAAAGTTGG 58.148 50.000 4.44 4.44 0.00 3.77
2464 2603 1.136110 CCCAAACGCTTCAAAGTTGGT 59.864 47.619 8.81 0.00 0.00 3.67
2465 2604 2.459934 CCAAACGCTTCAAAGTTGGTC 58.540 47.619 0.00 0.00 0.00 4.02
2466 2605 2.159310 CCAAACGCTTCAAAGTTGGTCA 60.159 45.455 0.00 0.00 0.00 4.02
2503 2642 8.190784 CCCAAACTCATGATATAAAACCTTGAC 58.809 37.037 0.00 0.00 0.00 3.18
2580 2842 8.608185 ACAAAATTGATACCATGGGATTTACT 57.392 30.769 18.09 0.00 0.00 2.24
2581 2843 8.695456 ACAAAATTGATACCATGGGATTTACTC 58.305 33.333 18.09 1.58 0.00 2.59
2582 2844 7.839680 AAATTGATACCATGGGATTTACTCC 57.160 36.000 18.09 0.00 44.11 3.85
2591 2853 0.388294 GGATTTACTCCCTCCGTCCG 59.612 60.000 0.00 0.00 38.19 4.79
2592 2854 1.396653 GATTTACTCCCTCCGTCCGA 58.603 55.000 0.00 0.00 0.00 4.55
2593 2855 1.753073 GATTTACTCCCTCCGTCCGAA 59.247 52.381 0.00 0.00 0.00 4.30
2594 2856 1.631405 TTTACTCCCTCCGTCCGAAA 58.369 50.000 0.00 0.00 0.00 3.46
2595 2857 1.631405 TTACTCCCTCCGTCCGAAAA 58.369 50.000 0.00 0.00 0.00 2.29
2596 2858 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
2597 2859 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2598 2860 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2599 2861 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2600 2862 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2601 2863 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2602 2864 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2603 2865 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2604 2866 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
2605 2867 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
2606 2868 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
2607 2869 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
2608 2870 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
2609 2871 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
2610 2872 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
2611 2873 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
2612 2874 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
2613 2875 8.020819 GTCCGAAAATACTTGTCATCAAAATGA 58.979 33.333 0.00 0.00 39.63 2.57
2614 2876 8.572185 TCCGAAAATACTTGTCATCAAAATGAA 58.428 29.630 0.00 0.00 43.42 2.57
2615 2877 9.357652 CCGAAAATACTTGTCATCAAAATGAAT 57.642 29.630 0.00 0.00 43.42 2.57
2622 2884 8.231304 ACTTGTCATCAAAATGAATAAAAGCG 57.769 30.769 0.00 0.00 43.42 4.68
2623 2885 7.329226 ACTTGTCATCAAAATGAATAAAAGCGG 59.671 33.333 0.00 0.00 43.42 5.52
2624 2886 6.918626 TGTCATCAAAATGAATAAAAGCGGA 58.081 32.000 0.00 0.00 43.42 5.54
2625 2887 7.546358 TGTCATCAAAATGAATAAAAGCGGAT 58.454 30.769 0.00 0.00 43.42 4.18
2626 2888 7.488792 TGTCATCAAAATGAATAAAAGCGGATG 59.511 33.333 0.00 0.00 43.42 3.51
2627 2889 7.489113 GTCATCAAAATGAATAAAAGCGGATGT 59.511 33.333 0.00 0.00 43.42 3.06
2628 2890 8.681806 TCATCAAAATGAATAAAAGCGGATGTA 58.318 29.630 0.00 0.00 38.97 2.29
2629 2891 9.467258 CATCAAAATGAATAAAAGCGGATGTAT 57.533 29.630 0.00 0.00 34.61 2.29
2630 2892 9.683069 ATCAAAATGAATAAAAGCGGATGTATC 57.317 29.630 0.00 0.00 0.00 2.24
2631 2893 8.902806 TCAAAATGAATAAAAGCGGATGTATCT 58.097 29.630 0.00 0.00 0.00 1.98
2634 2896 9.778741 AAATGAATAAAAGCGGATGTATCTAGA 57.221 29.630 0.00 0.00 0.00 2.43
2635 2897 9.950496 AATGAATAAAAGCGGATGTATCTAGAT 57.050 29.630 10.73 10.73 0.00 1.98
2636 2898 8.763049 TGAATAAAAGCGGATGTATCTAGATG 57.237 34.615 15.79 0.00 0.00 2.90
2637 2899 8.367911 TGAATAAAAGCGGATGTATCTAGATGT 58.632 33.333 15.79 1.25 0.00 3.06
2638 2900 9.856488 GAATAAAAGCGGATGTATCTAGATGTA 57.144 33.333 15.79 4.44 0.00 2.29
2642 2904 9.561069 AAAAGCGGATGTATCTAGATGTATTTT 57.439 29.630 15.79 8.00 0.00 1.82
2644 2906 9.862371 AAGCGGATGTATCTAGATGTATTTTAG 57.138 33.333 15.79 1.75 0.00 1.85
2645 2907 9.026121 AGCGGATGTATCTAGATGTATTTTAGT 57.974 33.333 15.79 0.00 0.00 2.24
2646 2908 9.640963 GCGGATGTATCTAGATGTATTTTAGTT 57.359 33.333 15.79 0.00 0.00 2.24
2669 2931 8.816894 AGTTCTAGATACATCTCTTTTTGTCCA 58.183 33.333 0.00 0.00 38.32 4.02
2670 2932 9.606631 GTTCTAGATACATCTCTTTTTGTCCAT 57.393 33.333 0.00 0.00 38.32 3.41
2675 2937 9.300681 AGATACATCTCTTTTTGTCCATTTTGA 57.699 29.630 0.00 0.00 29.30 2.69
2677 2939 9.865321 ATACATCTCTTTTTGTCCATTTTGATG 57.135 29.630 0.00 0.00 35.23 3.07
2678 2940 7.954835 ACATCTCTTTTTGTCCATTTTGATGA 58.045 30.769 0.00 0.00 33.85 2.92
2679 2941 7.869429 ACATCTCTTTTTGTCCATTTTGATGAC 59.131 33.333 0.00 0.00 33.85 3.06
2680 2942 7.345422 TCTCTTTTTGTCCATTTTGATGACA 57.655 32.000 0.00 0.00 0.00 3.58
2681 2943 7.780064 TCTCTTTTTGTCCATTTTGATGACAA 58.220 30.769 0.00 0.00 34.47 3.18
2682 2944 7.922278 TCTCTTTTTGTCCATTTTGATGACAAG 59.078 33.333 0.00 0.00 37.13 3.16
2683 2945 7.555087 TCTTTTTGTCCATTTTGATGACAAGT 58.445 30.769 0.00 0.00 37.13 3.16
2684 2946 8.690884 TCTTTTTGTCCATTTTGATGACAAGTA 58.309 29.630 0.00 0.00 37.13 2.24
2685 2947 9.480053 CTTTTTGTCCATTTTGATGACAAGTAT 57.520 29.630 0.00 0.00 37.13 2.12
2686 2948 9.829507 TTTTTGTCCATTTTGATGACAAGTATT 57.170 25.926 0.00 0.00 37.13 1.89
2687 2949 9.829507 TTTTGTCCATTTTGATGACAAGTATTT 57.170 25.926 0.00 0.00 37.13 1.40
2688 2950 9.829507 TTTGTCCATTTTGATGACAAGTATTTT 57.170 25.926 0.00 0.00 37.13 1.82
2689 2951 9.474920 TTGTCCATTTTGATGACAAGTATTTTC 57.525 29.630 0.00 0.00 37.32 2.29
2690 2952 7.807433 TGTCCATTTTGATGACAAGTATTTTCG 59.193 33.333 0.00 0.00 37.32 3.46
2691 2953 7.273381 GTCCATTTTGATGACAAGTATTTTCGG 59.727 37.037 0.00 0.00 37.32 4.30
2692 2954 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
2693 2955 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
2694 2956 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
2695 2957 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
2696 2958 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
2697 2959 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
2698 2960 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2699 2961 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2700 2962 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2701 2963 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
2702 2964 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
2703 2965 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
2708 2970 1.753073 TCGGACGGAGGGAGTATTTTC 59.247 52.381 0.00 0.00 0.00 2.29
2823 3093 7.040201 ACTGTGCATTTTGAAACAGACTGATAT 60.040 33.333 10.08 0.00 42.09 1.63
2878 3148 5.344743 TGAGGAATCTATGTCACTTCCAC 57.655 43.478 3.28 0.00 39.71 4.02
2893 3166 8.038944 TGTCACTTCCACTTTGGTATATTAGAC 58.961 37.037 0.00 0.00 39.03 2.59
3156 3430 5.639506 TGTTCAGAGTATTTTAGCTGCTGTC 59.360 40.000 13.43 0.00 0.00 3.51
3172 3446 3.888323 TGCTGTCAAGTCATTTTAGCCAA 59.112 39.130 0.00 0.00 0.00 4.52
3243 3517 8.437360 TGCTAACATATTGTCTCCTAACATTG 57.563 34.615 0.00 0.00 0.00 2.82
3339 3613 5.278463 GCACATTGACAGTTGATACACCTTT 60.278 40.000 0.00 0.00 0.00 3.11
3349 3626 7.012421 ACAGTTGATACACCTTTTGTCTTCTTC 59.988 37.037 0.00 0.00 39.91 2.87
3350 3627 7.227512 CAGTTGATACACCTTTTGTCTTCTTCT 59.772 37.037 0.00 0.00 39.91 2.85
3351 3628 7.775561 AGTTGATACACCTTTTGTCTTCTTCTT 59.224 33.333 0.00 0.00 39.91 2.52
3433 3710 6.655003 TGGACAATCTTCTGAAACATAAGGTC 59.345 38.462 0.00 0.00 0.00 3.85
3503 3780 7.178097 AGCTATCTCATCATAAGCAGATACACA 59.822 37.037 0.00 0.00 0.00 3.72
3570 3847 2.027653 CCTTTTCTGGTCTCCTCAGGAC 60.028 54.545 0.00 0.00 33.36 3.85
3672 3949 4.142491 CCATCCGTCTATGATAGAGTGAGC 60.142 50.000 1.68 0.00 35.04 4.26
3806 4083 8.696043 TTCATGATGGGGTTAATCTTGAATAG 57.304 34.615 0.00 0.00 40.47 1.73
3854 4134 9.143631 AGTTTTGTTCTTAGATATTTGCATTGC 57.856 29.630 0.46 0.46 0.00 3.56
3889 4169 6.229936 TGTGTTAAGGTATATCGCTTCCTT 57.770 37.500 0.00 0.00 42.10 3.36
3899 4179 6.535508 GGTATATCGCTTCCTTTAGGCATTAG 59.464 42.308 0.00 0.00 34.44 1.73
3973 4378 3.128242 CCATGAACTCAAGGATGCAACTC 59.872 47.826 0.00 0.00 36.89 3.01
4077 4482 3.250762 ACAATGTTGATATCAATCGCCCG 59.749 43.478 20.65 10.27 38.24 6.13
4098 4503 4.687948 CCGGATGATGTATGTTAAGCTCAG 59.312 45.833 0.00 0.00 0.00 3.35
4114 4519 9.389755 GTTAAGCTCAGGAATTATCTCTTCTTT 57.610 33.333 0.00 0.00 0.00 2.52
4125 4542 9.553418 GAATTATCTCTTCTTTTCTTGTCTTGC 57.447 33.333 0.00 0.00 0.00 4.01
4145 4567 5.385509 TGCTTTCTTATGGTTTAACTGCC 57.614 39.130 0.00 0.00 0.00 4.85
4384 4810 1.439543 GATATCAGGTTCCCAGCCCT 58.560 55.000 0.00 0.00 0.00 5.19
4391 4817 0.183731 GGTTCCCAGCCCTATCTTGG 59.816 60.000 0.00 0.00 0.00 3.61
4493 4919 0.468226 GTGCCTCCGATTGGGTCATA 59.532 55.000 0.00 0.00 37.00 2.15
4695 5121 7.012610 TGCAGATAGGTACAATTCAATCACATG 59.987 37.037 0.00 0.00 0.00 3.21
4708 5134 7.789273 TTCAATCACATGTTTTGAAGCATTT 57.211 28.000 21.48 0.00 35.16 2.32
4749 5175 2.611292 GACTATAAGCAGCTGCAACAGG 59.389 50.000 38.24 25.59 45.16 4.00
4753 5179 0.538977 AAGCAGCTGCAACAGGACAT 60.539 50.000 38.24 13.55 45.16 3.06
4768 5194 1.527034 GACATGTTTGCTGCTGGAGA 58.473 50.000 0.00 0.00 0.00 3.71
4773 5199 2.867624 TGTTTGCTGCTGGAGAGAAAT 58.132 42.857 0.00 0.00 0.00 2.17
4910 5336 0.886490 GACCAGTCACTGTTGCCAGG 60.886 60.000 3.56 0.00 43.36 4.45
4913 5339 1.609061 CCAGTCACTGTTGCCAGGTAG 60.609 57.143 3.56 0.00 43.36 3.18
4924 5352 5.521696 TGTTGCCAGGTAGTAGGTAAGATA 58.478 41.667 0.00 0.00 29.97 1.98
4971 5399 0.699399 TTTCTGGGCCGTTGGGATAA 59.301 50.000 0.00 0.00 34.06 1.75
4997 5425 3.322369 TGGCCATAATTATAGCGTCACG 58.678 45.455 0.00 0.00 0.00 4.35
5055 5485 6.313519 ACAGGCTTATCTCCTTTATGTCAA 57.686 37.500 0.00 0.00 0.00 3.18
5170 5600 4.100653 TGATGGTGATCTGAGACATCTTCC 59.899 45.833 10.77 3.02 38.88 3.46
5190 5620 2.755103 CCACCCTAGGAACAATTCAAGC 59.245 50.000 11.48 0.00 0.00 4.01
5193 5623 4.636206 CACCCTAGGAACAATTCAAGCTAC 59.364 45.833 11.48 0.00 0.00 3.58
5203 5633 8.328864 GGAACAATTCAAGCTACTATTAACTCG 58.671 37.037 0.00 0.00 0.00 4.18
5206 5636 7.277981 ACAATTCAAGCTACTATTAACTCGGTG 59.722 37.037 0.00 0.00 0.00 4.94
5215 5645 2.046009 TTAACTCGGTGTGCCTGCCA 62.046 55.000 0.00 0.00 0.00 4.92
5266 5696 0.549950 ATCAACAGGGAGCCCATCAG 59.450 55.000 8.53 0.00 38.92 2.90
5321 5751 9.727859 TCAGGAAGTACATAGACTGATATACTC 57.272 37.037 0.00 0.00 30.75 2.59
5322 5752 8.952278 CAGGAAGTACATAGACTGATATACTCC 58.048 40.741 0.00 0.00 0.00 3.85
5323 5753 8.110908 AGGAAGTACATAGACTGATATACTCCC 58.889 40.741 0.00 0.00 0.00 4.30
5324 5754 8.110908 GGAAGTACATAGACTGATATACTCCCT 58.889 40.741 0.00 0.00 0.00 4.20
5325 5755 9.169592 GAAGTACATAGACTGATATACTCCCTC 57.830 40.741 0.00 0.00 0.00 4.30
5326 5756 7.635648 AGTACATAGACTGATATACTCCCTCC 58.364 42.308 0.00 0.00 0.00 4.30
5327 5757 6.470456 ACATAGACTGATATACTCCCTCCA 57.530 41.667 0.00 0.00 0.00 3.86
5328 5758 7.050493 ACATAGACTGATATACTCCCTCCAT 57.950 40.000 0.00 0.00 0.00 3.41
5329 5759 8.176216 ACATAGACTGATATACTCCCTCCATA 57.824 38.462 0.00 0.00 0.00 2.74
5330 5760 8.056400 ACATAGACTGATATACTCCCTCCATAC 58.944 40.741 0.00 0.00 0.00 2.39
5331 5761 5.833340 AGACTGATATACTCCCTCCATACC 58.167 45.833 0.00 0.00 0.00 2.73
5332 5762 5.316183 AGACTGATATACTCCCTCCATACCA 59.684 44.000 0.00 0.00 0.00 3.25
5333 5763 5.977533 ACTGATATACTCCCTCCATACCAA 58.022 41.667 0.00 0.00 0.00 3.67
5334 5764 6.390504 ACTGATATACTCCCTCCATACCAAA 58.609 40.000 0.00 0.00 0.00 3.28
5335 5765 6.849697 ACTGATATACTCCCTCCATACCAAAA 59.150 38.462 0.00 0.00 0.00 2.44
5336 5766 7.517604 ACTGATATACTCCCTCCATACCAAAAT 59.482 37.037 0.00 0.00 0.00 1.82
5337 5767 8.982471 TGATATACTCCCTCCATACCAAAATA 57.018 34.615 0.00 0.00 0.00 1.40
5338 5768 9.400208 TGATATACTCCCTCCATACCAAAATAA 57.600 33.333 0.00 0.00 0.00 1.40
5339 5769 9.892130 GATATACTCCCTCCATACCAAAATAAG 57.108 37.037 0.00 0.00 0.00 1.73
5340 5770 7.707467 ATACTCCCTCCATACCAAAATAAGT 57.293 36.000 0.00 0.00 0.00 2.24
5341 5771 5.755849 ACTCCCTCCATACCAAAATAAGTG 58.244 41.667 0.00 0.00 0.00 3.16
5342 5772 5.491078 ACTCCCTCCATACCAAAATAAGTGA 59.509 40.000 0.00 0.00 0.00 3.41
5343 5773 5.751586 TCCCTCCATACCAAAATAAGTGAC 58.248 41.667 0.00 0.00 0.00 3.67
5344 5774 5.491078 TCCCTCCATACCAAAATAAGTGACT 59.509 40.000 0.00 0.00 0.00 3.41
5345 5775 5.823045 CCCTCCATACCAAAATAAGTGACTC 59.177 44.000 0.00 0.00 0.00 3.36
5346 5776 6.414732 CCTCCATACCAAAATAAGTGACTCA 58.585 40.000 0.00 0.00 0.00 3.41
5347 5777 6.884295 CCTCCATACCAAAATAAGTGACTCAA 59.116 38.462 0.00 0.00 0.00 3.02
5348 5778 7.148239 CCTCCATACCAAAATAAGTGACTCAAC 60.148 40.741 0.00 0.00 0.00 3.18
5349 5779 7.458397 TCCATACCAAAATAAGTGACTCAACT 58.542 34.615 0.00 0.00 0.00 3.16
5350 5780 7.942341 TCCATACCAAAATAAGTGACTCAACTT 59.058 33.333 0.00 0.00 42.89 2.66
5351 5781 8.576442 CCATACCAAAATAAGTGACTCAACTTT 58.424 33.333 0.00 0.00 40.77 2.66
5352 5782 9.398170 CATACCAAAATAAGTGACTCAACTTTG 57.602 33.333 0.00 0.00 40.77 2.77
5353 5783 7.404671 ACCAAAATAAGTGACTCAACTTTGT 57.595 32.000 0.00 0.00 40.77 2.83
5354 5784 8.514330 ACCAAAATAAGTGACTCAACTTTGTA 57.486 30.769 0.00 0.00 40.77 2.41
5355 5785 8.403236 ACCAAAATAAGTGACTCAACTTTGTAC 58.597 33.333 0.00 0.00 40.77 2.90
5356 5786 8.621286 CCAAAATAAGTGACTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
5362 5792 8.788325 AAGTGACTCAACTTTGTACTAACTTT 57.212 30.769 0.00 0.00 37.05 2.66
5363 5793 8.197988 AGTGACTCAACTTTGTACTAACTTTG 57.802 34.615 0.00 0.00 0.00 2.77
5364 5794 7.822822 AGTGACTCAACTTTGTACTAACTTTGT 59.177 33.333 0.00 0.00 0.00 2.83
5365 5795 7.903431 GTGACTCAACTTTGTACTAACTTTGTG 59.097 37.037 0.00 1.74 0.00 3.33
5366 5796 7.065324 TGACTCAACTTTGTACTAACTTTGTGG 59.935 37.037 0.00 0.00 0.00 4.17
5367 5797 6.317893 ACTCAACTTTGTACTAACTTTGTGGG 59.682 38.462 0.00 0.00 0.00 4.61
5368 5798 6.416415 TCAACTTTGTACTAACTTTGTGGGA 58.584 36.000 0.00 0.00 0.00 4.37
5369 5799 6.540914 TCAACTTTGTACTAACTTTGTGGGAG 59.459 38.462 0.00 0.00 0.00 4.30
5411 5841 1.066573 CACAGGTCGCTCCTCTGAAAT 60.067 52.381 0.00 0.00 46.24 2.17
5463 5893 1.000283 ACTCTCAGACAGTTTCAGGCG 60.000 52.381 0.00 0.00 0.00 5.52
5518 5948 3.571119 CGCAGCTTCTTCAGTGGG 58.429 61.111 0.00 0.00 0.00 4.61
5531 5961 1.460305 AGTGGGTGTGAGAGCCTGT 60.460 57.895 0.00 0.00 43.37 4.00
5623 6054 0.545309 AGGAGTTAGCAGGCCACTCA 60.545 55.000 18.84 0.00 39.02 3.41
5678 6109 4.016105 TCCCTAGAAGGTCCAGAGAAATCT 60.016 45.833 0.00 0.00 31.93 2.40
5679 6110 4.100808 CCCTAGAAGGTCCAGAGAAATCTG 59.899 50.000 0.00 0.00 33.87 2.90
5703 6134 2.267174 AGGCCAGCATCATCATGTAC 57.733 50.000 5.01 0.00 31.86 2.90
5707 6138 2.747467 GCCAGCATCATCATGTACACCT 60.747 50.000 0.00 0.00 31.86 4.00
5727 6158 0.395311 CATTCCAGCTGTGAGGGCAT 60.395 55.000 13.81 0.00 0.00 4.40
5801 6233 3.452474 CTCTCCATGTAGAGGCTTTTCG 58.548 50.000 7.41 0.00 39.52 3.46
5813 6245 4.080299 AGAGGCTTTTCGAATTCCTGGTAT 60.080 41.667 15.32 0.00 0.00 2.73
5817 6249 5.805486 GGCTTTTCGAATTCCTGGTATTTTC 59.195 40.000 0.00 0.00 0.00 2.29
5818 6250 5.511729 GCTTTTCGAATTCCTGGTATTTTCG 59.488 40.000 0.00 13.01 40.23 3.46
5830 6263 4.850680 TGGTATTTTCGGAATTAGCCACT 58.149 39.130 5.37 0.00 0.00 4.00
6016 6454 3.405831 TCAGAGACTGTTCCAAATGCAG 58.594 45.455 0.00 0.00 36.41 4.41
6019 6457 4.756642 CAGAGACTGTTCCAAATGCAGTTA 59.243 41.667 0.00 0.00 42.71 2.24
6032 6470 1.535028 TGCAGTTAGCCACAAACATCG 59.465 47.619 0.00 0.00 44.83 3.84
6046 6484 5.116074 CACAAACATCGAAGAACAAATGCTC 59.884 40.000 0.00 0.00 43.58 4.26
6070 6508 7.921787 TCGATAGATTCTAGTTCAGAACAGAC 58.078 38.462 15.85 5.88 46.01 3.51
6071 6509 7.553044 TCGATAGATTCTAGTTCAGAACAGACA 59.447 37.037 15.85 7.65 46.01 3.41
6072 6510 7.642194 CGATAGATTCTAGTTCAGAACAGACAC 59.358 40.741 15.85 11.12 46.01 3.67
6073 6511 6.656632 AGATTCTAGTTCAGAACAGACACA 57.343 37.500 15.85 2.96 46.01 3.72
6074 6512 7.238486 AGATTCTAGTTCAGAACAGACACAT 57.762 36.000 15.85 6.98 46.01 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 9.874205 CCATGGAAAAATTGTATCTATGTTTGT 57.126 29.630 5.56 0.00 32.15 2.83
120 121 0.184451 ATTGCCATCGCTCCCTCAAT 59.816 50.000 0.00 0.00 35.36 2.57
143 144 5.515106 TCCCTTACATTCCAGTAAATTGGG 58.485 41.667 0.00 0.00 37.88 4.12
174 176 0.111446 TGGCAAAATTGGACCTCCGA 59.889 50.000 0.00 0.00 39.43 4.55
250 254 3.221771 TCACCCCTTGTTTCACATTCAG 58.778 45.455 0.00 0.00 0.00 3.02
253 257 2.091333 ACCTCACCCCTTGTTTCACATT 60.091 45.455 0.00 0.00 0.00 2.71
260 264 1.450211 CACGACCTCACCCCTTGTT 59.550 57.895 0.00 0.00 0.00 2.83
261 265 3.148084 CACGACCTCACCCCTTGT 58.852 61.111 0.00 0.00 0.00 3.16
262 266 2.358737 GCACGACCTCACCCCTTG 60.359 66.667 0.00 0.00 0.00 3.61
263 267 0.907704 TATGCACGACCTCACCCCTT 60.908 55.000 0.00 0.00 0.00 3.95
264 268 0.691078 ATATGCACGACCTCACCCCT 60.691 55.000 0.00 0.00 0.00 4.79
265 269 0.532862 CATATGCACGACCTCACCCC 60.533 60.000 0.00 0.00 0.00 4.95
266 270 0.532862 CCATATGCACGACCTCACCC 60.533 60.000 0.00 0.00 0.00 4.61
267 271 1.160329 GCCATATGCACGACCTCACC 61.160 60.000 0.00 0.00 40.77 4.02
268 272 1.160329 GGCCATATGCACGACCTCAC 61.160 60.000 0.00 0.00 43.89 3.51
269 273 1.146041 GGCCATATGCACGACCTCA 59.854 57.895 0.00 0.00 43.89 3.86
270 274 0.250467 ATGGCCATATGCACGACCTC 60.250 55.000 19.18 0.00 43.89 3.85
271 275 0.535780 CATGGCCATATGCACGACCT 60.536 55.000 20.30 0.00 43.89 3.85
272 276 0.819259 ACATGGCCATATGCACGACC 60.819 55.000 20.30 0.00 43.89 4.79
273 277 0.588252 GACATGGCCATATGCACGAC 59.412 55.000 20.30 1.22 43.89 4.34
274 278 0.469494 AGACATGGCCATATGCACGA 59.531 50.000 20.30 0.00 43.89 4.35
275 279 2.071540 CTAGACATGGCCATATGCACG 58.928 52.381 20.30 7.50 43.89 5.34
276 280 3.407424 TCTAGACATGGCCATATGCAC 57.593 47.619 20.30 6.95 43.89 4.57
277 281 3.808265 GCTTCTAGACATGGCCATATGCA 60.808 47.826 20.30 3.42 43.89 3.96
278 282 2.746362 GCTTCTAGACATGGCCATATGC 59.254 50.000 20.30 11.75 40.16 3.14
279 283 4.252073 GAGCTTCTAGACATGGCCATATG 58.748 47.826 20.30 11.91 0.00 1.78
280 284 3.056250 CGAGCTTCTAGACATGGCCATAT 60.056 47.826 20.30 7.25 0.00 1.78
281 285 2.297315 CGAGCTTCTAGACATGGCCATA 59.703 50.000 20.30 0.95 0.00 2.74
282 286 1.069823 CGAGCTTCTAGACATGGCCAT 59.930 52.381 14.09 14.09 0.00 4.40
283 287 0.461548 CGAGCTTCTAGACATGGCCA 59.538 55.000 8.56 8.56 0.00 5.36
284 288 0.249657 CCGAGCTTCTAGACATGGCC 60.250 60.000 0.00 0.00 0.00 5.36
285 289 0.461961 ACCGAGCTTCTAGACATGGC 59.538 55.000 0.00 0.00 0.00 4.40
286 290 1.804372 GCACCGAGCTTCTAGACATGG 60.804 57.143 0.00 0.00 41.15 3.66
287 291 1.565305 GCACCGAGCTTCTAGACATG 58.435 55.000 0.00 0.00 41.15 3.21
288 292 0.461961 GGCACCGAGCTTCTAGACAT 59.538 55.000 0.00 0.00 44.79 3.06
289 293 1.890894 GGCACCGAGCTTCTAGACA 59.109 57.895 0.00 0.00 44.79 3.41
290 294 4.816990 GGCACCGAGCTTCTAGAC 57.183 61.111 0.00 0.00 44.79 2.59
763 849 2.102420 TCTTGACACCGAGTGACAACAT 59.898 45.455 14.21 0.00 41.41 2.71
835 921 9.620660 GAGTAGTTTGTTCTTTCAACTCAAAAA 57.379 29.630 0.00 0.00 31.45 1.94
836 922 8.241367 GGAGTAGTTTGTTCTTTCAACTCAAAA 58.759 33.333 0.00 0.00 31.45 2.44
837 923 7.610305 AGGAGTAGTTTGTTCTTTCAACTCAAA 59.390 33.333 0.00 0.00 0.00 2.69
838 924 7.110155 AGGAGTAGTTTGTTCTTTCAACTCAA 58.890 34.615 0.00 0.00 0.00 3.02
839 925 6.650120 AGGAGTAGTTTGTTCTTTCAACTCA 58.350 36.000 0.00 0.00 0.00 3.41
840 926 7.927092 AGTAGGAGTAGTTTGTTCTTTCAACTC 59.073 37.037 0.00 0.00 0.00 3.01
841 927 7.793036 AGTAGGAGTAGTTTGTTCTTTCAACT 58.207 34.615 0.00 0.00 0.00 3.16
842 928 8.434733 AAGTAGGAGTAGTTTGTTCTTTCAAC 57.565 34.615 0.00 0.00 0.00 3.18
843 929 7.713942 GGAAGTAGGAGTAGTTTGTTCTTTCAA 59.286 37.037 0.00 0.00 0.00 2.69
844 930 7.070821 AGGAAGTAGGAGTAGTTTGTTCTTTCA 59.929 37.037 0.00 0.00 0.00 2.69
845 931 7.443477 AGGAAGTAGGAGTAGTTTGTTCTTTC 58.557 38.462 0.00 0.00 0.00 2.62
846 932 7.376335 AGGAAGTAGGAGTAGTTTGTTCTTT 57.624 36.000 0.00 0.00 0.00 2.52
847 933 6.997942 AGGAAGTAGGAGTAGTTTGTTCTT 57.002 37.500 0.00 0.00 0.00 2.52
848 934 6.997942 AAGGAAGTAGGAGTAGTTTGTTCT 57.002 37.500 0.00 0.00 0.00 3.01
849 935 6.990939 ACAAAGGAAGTAGGAGTAGTTTGTTC 59.009 38.462 0.00 0.00 34.12 3.18
850 936 6.896883 ACAAAGGAAGTAGGAGTAGTTTGTT 58.103 36.000 0.00 0.00 34.12 2.83
851 937 6.496144 ACAAAGGAAGTAGGAGTAGTTTGT 57.504 37.500 0.00 0.00 33.24 2.83
852 938 9.503399 AATAACAAAGGAAGTAGGAGTAGTTTG 57.497 33.333 0.00 0.00 0.00 2.93
853 939 9.722184 GAATAACAAAGGAAGTAGGAGTAGTTT 57.278 33.333 0.00 0.00 0.00 2.66
854 940 8.033626 CGAATAACAAAGGAAGTAGGAGTAGTT 58.966 37.037 0.00 0.00 0.00 2.24
855 941 7.363617 CCGAATAACAAAGGAAGTAGGAGTAGT 60.364 40.741 0.00 0.00 0.00 2.73
856 942 6.979238 CCGAATAACAAAGGAAGTAGGAGTAG 59.021 42.308 0.00 0.00 0.00 2.57
857 943 6.127253 CCCGAATAACAAAGGAAGTAGGAGTA 60.127 42.308 0.00 0.00 0.00 2.59
858 944 5.338137 CCCGAATAACAAAGGAAGTAGGAGT 60.338 44.000 0.00 0.00 0.00 3.85
859 945 5.116882 CCCGAATAACAAAGGAAGTAGGAG 58.883 45.833 0.00 0.00 0.00 3.69
860 946 4.624604 GCCCGAATAACAAAGGAAGTAGGA 60.625 45.833 0.00 0.00 0.00 2.94
861 947 3.626217 GCCCGAATAACAAAGGAAGTAGG 59.374 47.826 0.00 0.00 0.00 3.18
948 1034 3.743899 GCTCTTATCTTCTGGGCTGGAAG 60.744 52.174 11.65 11.65 40.85 3.46
952 1038 1.202746 GGGCTCTTATCTTCTGGGCTG 60.203 57.143 0.00 0.00 0.00 4.85
1072 1158 1.011293 TGGAGGATTGGGGAGGAGAAT 59.989 52.381 0.00 0.00 0.00 2.40
1258 1359 1.990614 GGGGGTCTCGAAGGCTTCT 60.991 63.158 23.74 0.00 0.00 2.85
1261 1362 4.698625 ACGGGGGTCTCGAAGGCT 62.699 66.667 0.00 0.00 0.00 4.58
1271 1372 4.755507 GAGGTCGAGGACGGGGGT 62.756 72.222 0.00 0.00 40.21 4.95
1583 1684 2.433838 CAGCCTCACCTCGCTGTG 60.434 66.667 0.91 0.00 45.97 3.66
1638 1739 4.882396 GCTTCTCCTCGAGCGGCC 62.882 72.222 6.99 0.00 0.00 6.13
1797 1898 1.949847 CTTGCCATCCTCCGTCTCGT 61.950 60.000 0.00 0.00 0.00 4.18
1870 1976 6.588719 TCACATTATCAACAAAGGAAAGGG 57.411 37.500 0.00 0.00 0.00 3.95
1898 2011 9.903682 TGTAATTCGCCTACTACTCAATAATAC 57.096 33.333 0.00 0.00 0.00 1.89
1908 2021 7.399523 CAACATTTCTGTAATTCGCCTACTAC 58.600 38.462 0.00 0.00 33.36 2.73
1909 2022 6.036735 GCAACATTTCTGTAATTCGCCTACTA 59.963 38.462 0.00 0.00 33.36 1.82
1944 2065 3.306641 GCACAGGGTTGATTTAATTGGCA 60.307 43.478 0.00 0.00 0.00 4.92
1950 2071 5.180492 CGTTTCTAGCACAGGGTTGATTTAA 59.820 40.000 0.00 0.00 0.00 1.52
1974 2095 7.594714 TCAGTATATCTACTTCATTCGGCTTC 58.405 38.462 0.00 0.00 35.99 3.86
2045 2183 4.728021 GCTTGCAAAATAACTCGCCTACTC 60.728 45.833 0.00 0.00 0.00 2.59
2098 2236 7.057264 TGTCCCGACATATAAATTCCAATTGA 58.943 34.615 7.12 0.00 36.21 2.57
2104 2242 6.068473 GGTTTGTCCCGACATATAAATTCC 57.932 41.667 0.00 0.00 41.52 3.01
2126 2264 4.425520 TGCTTGTTTTAACTTCGTTTGGG 58.574 39.130 0.00 0.00 0.00 4.12
2132 2270 6.567769 AACAACATGCTTGTTTTAACTTCG 57.432 33.333 14.80 4.76 43.57 3.79
2138 2276 5.414360 TGCTCAAACAACATGCTTGTTTTA 58.586 33.333 24.18 19.10 46.76 1.52
2159 2297 7.065803 TGGAGTAGTAGAATAAACTTGCAATGC 59.934 37.037 0.00 0.00 0.00 3.56
2160 2298 8.492673 TGGAGTAGTAGAATAAACTTGCAATG 57.507 34.615 0.00 0.00 0.00 2.82
2168 2306 5.363005 TGCCCTCTGGAGTAGTAGAATAAAC 59.637 44.000 0.00 0.00 0.00 2.01
2177 2315 0.115349 ACTGTGCCCTCTGGAGTAGT 59.885 55.000 0.00 0.00 0.00 2.73
2182 2320 2.565834 GTTTAGTACTGTGCCCTCTGGA 59.434 50.000 5.39 0.00 0.00 3.86
2205 2343 4.944962 TGCACATTTCTCCGATAACTTG 57.055 40.909 0.00 0.00 0.00 3.16
2251 2389 0.961019 CATAATGGATTGCCGGTGGG 59.039 55.000 1.90 0.00 36.79 4.61
2255 2393 4.724074 ATAATGCATAATGGATTGCCGG 57.276 40.909 0.00 0.00 38.84 6.13
2277 2415 2.324330 CGTGGCATTCGGAGTGCAA 61.324 57.895 24.07 12.83 44.25 4.08
2316 2454 4.154195 AGCATTTGGTCAAAGTCGTACATC 59.846 41.667 2.55 0.00 33.32 3.06
2354 2493 7.383300 GGGCATTATCGTAAGTCGTATAACTTT 59.617 37.037 0.00 0.00 40.01 2.66
2372 2511 3.509575 TCTTTGAAGCGTTTGGGCATTAT 59.490 39.130 0.00 0.00 34.64 1.28
2406 2545 0.820871 TTTGAAGCGTTTGGGCAACT 59.179 45.000 0.00 0.00 32.53 3.16
2433 2572 1.960689 AGCGTTTGGGCAATGTAAGTT 59.039 42.857 0.00 0.00 34.64 2.66
2434 2573 1.616159 AGCGTTTGGGCAATGTAAGT 58.384 45.000 0.00 0.00 34.64 2.24
2435 2574 2.030363 TGAAGCGTTTGGGCAATGTAAG 60.030 45.455 0.00 0.00 34.64 2.34
2436 2575 1.957177 TGAAGCGTTTGGGCAATGTAA 59.043 42.857 0.00 0.00 34.64 2.41
2437 2576 1.610363 TGAAGCGTTTGGGCAATGTA 58.390 45.000 0.00 0.00 34.64 2.29
2438 2577 0.749649 TTGAAGCGTTTGGGCAATGT 59.250 45.000 0.00 0.00 34.64 2.71
2439 2578 1.794116 CTTTGAAGCGTTTGGGCAATG 59.206 47.619 0.00 0.00 34.64 2.82
2440 2579 1.412343 ACTTTGAAGCGTTTGGGCAAT 59.588 42.857 0.00 0.00 34.64 3.56
2441 2580 0.820871 ACTTTGAAGCGTTTGGGCAA 59.179 45.000 0.00 0.00 34.64 4.52
2442 2581 0.820871 AACTTTGAAGCGTTTGGGCA 59.179 45.000 0.00 0.00 34.64 5.36
2443 2582 1.208259 CAACTTTGAAGCGTTTGGGC 58.792 50.000 0.00 0.00 0.00 5.36
2444 2583 1.136110 ACCAACTTTGAAGCGTTTGGG 59.864 47.619 13.12 0.00 0.00 4.12
2445 2584 2.159310 TGACCAACTTTGAAGCGTTTGG 60.159 45.455 9.02 9.02 0.00 3.28
2446 2585 3.143807 TGACCAACTTTGAAGCGTTTG 57.856 42.857 0.00 0.00 0.00 2.93
2447 2586 3.507786 GTTGACCAACTTTGAAGCGTTT 58.492 40.909 5.69 0.00 38.25 3.60
2448 2587 3.145212 GTTGACCAACTTTGAAGCGTT 57.855 42.857 5.69 0.00 38.25 4.84
2449 2588 2.844122 GTTGACCAACTTTGAAGCGT 57.156 45.000 5.69 0.00 38.25 5.07
2463 2602 4.037446 TGAGTTTGGGCAATGTAAGTTGAC 59.963 41.667 0.00 0.00 36.35 3.18
2464 2603 4.211125 TGAGTTTGGGCAATGTAAGTTGA 58.789 39.130 0.00 0.00 0.00 3.18
2465 2604 4.582701 TGAGTTTGGGCAATGTAAGTTG 57.417 40.909 0.00 0.00 0.00 3.16
2466 2605 4.832266 TCATGAGTTTGGGCAATGTAAGTT 59.168 37.500 0.00 0.00 0.00 2.66
2579 2841 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
2580 2842 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2581 2843 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2582 2844 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2583 2845 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
2584 2846 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
2585 2847 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
2586 2848 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
2587 2849 8.020819 TCATTTTGATGACAAGTATTTTCGGAC 58.979 33.333 0.00 0.00 37.32 4.79
2588 2850 8.105097 TCATTTTGATGACAAGTATTTTCGGA 57.895 30.769 0.00 0.00 37.32 4.55
2589 2851 8.741101 TTCATTTTGATGACAAGTATTTTCGG 57.259 30.769 0.00 0.00 37.32 4.30
2596 2858 9.340695 CGCTTTTATTCATTTTGATGACAAGTA 57.659 29.630 0.00 0.00 37.32 2.24
2597 2859 7.329226 CCGCTTTTATTCATTTTGATGACAAGT 59.671 33.333 0.00 0.00 37.32 3.16
2598 2860 7.541783 TCCGCTTTTATTCATTTTGATGACAAG 59.458 33.333 0.00 0.00 37.32 3.16
2599 2861 7.374272 TCCGCTTTTATTCATTTTGATGACAA 58.626 30.769 0.00 0.00 0.00 3.18
2600 2862 6.918626 TCCGCTTTTATTCATTTTGATGACA 58.081 32.000 0.00 0.00 0.00 3.58
2601 2863 7.489113 ACATCCGCTTTTATTCATTTTGATGAC 59.511 33.333 0.00 0.00 32.39 3.06
2602 2864 7.546358 ACATCCGCTTTTATTCATTTTGATGA 58.454 30.769 0.00 0.00 32.39 2.92
2603 2865 7.760131 ACATCCGCTTTTATTCATTTTGATG 57.240 32.000 0.00 0.00 33.80 3.07
2604 2866 9.683069 GATACATCCGCTTTTATTCATTTTGAT 57.317 29.630 0.00 0.00 0.00 2.57
2605 2867 8.902806 AGATACATCCGCTTTTATTCATTTTGA 58.097 29.630 0.00 0.00 0.00 2.69
2608 2870 9.778741 TCTAGATACATCCGCTTTTATTCATTT 57.221 29.630 0.00 0.00 0.00 2.32
2609 2871 9.950496 ATCTAGATACATCCGCTTTTATTCATT 57.050 29.630 2.53 0.00 0.00 2.57
2610 2872 9.376075 CATCTAGATACATCCGCTTTTATTCAT 57.624 33.333 4.54 0.00 0.00 2.57
2611 2873 8.367911 ACATCTAGATACATCCGCTTTTATTCA 58.632 33.333 4.54 0.00 0.00 2.57
2612 2874 8.764524 ACATCTAGATACATCCGCTTTTATTC 57.235 34.615 4.54 0.00 0.00 1.75
2616 2878 9.561069 AAAATACATCTAGATACATCCGCTTTT 57.439 29.630 4.54 0.52 0.00 2.27
2618 2880 9.862371 CTAAAATACATCTAGATACATCCGCTT 57.138 33.333 4.54 0.00 0.00 4.68
2619 2881 9.026121 ACTAAAATACATCTAGATACATCCGCT 57.974 33.333 4.54 0.00 0.00 5.52
2620 2882 9.640963 AACTAAAATACATCTAGATACATCCGC 57.359 33.333 4.54 0.00 0.00 5.54
2643 2905 8.816894 TGGACAAAAAGAGATGTATCTAGAACT 58.183 33.333 0.00 0.00 37.25 3.01
2644 2906 9.606631 ATGGACAAAAAGAGATGTATCTAGAAC 57.393 33.333 0.00 0.00 37.25 3.01
2649 2911 9.300681 TCAAAATGGACAAAAAGAGATGTATCT 57.699 29.630 0.00 0.00 40.50 1.98
2651 2913 9.865321 CATCAAAATGGACAAAAAGAGATGTAT 57.135 29.630 0.00 0.00 0.00 2.29
2652 2914 9.076781 TCATCAAAATGGACAAAAAGAGATGTA 57.923 29.630 0.00 0.00 33.42 2.29
2653 2915 7.869429 GTCATCAAAATGGACAAAAAGAGATGT 59.131 33.333 0.00 0.00 33.42 3.06
2654 2916 7.868922 TGTCATCAAAATGGACAAAAAGAGATG 59.131 33.333 0.00 0.00 33.42 2.90
2655 2917 7.954835 TGTCATCAAAATGGACAAAAAGAGAT 58.045 30.769 0.00 0.00 33.42 2.75
2656 2918 7.345422 TGTCATCAAAATGGACAAAAAGAGA 57.655 32.000 0.00 0.00 33.42 3.10
2657 2919 7.707893 ACTTGTCATCAAAATGGACAAAAAGAG 59.292 33.333 7.70 0.00 34.98 2.85
2658 2920 7.555087 ACTTGTCATCAAAATGGACAAAAAGA 58.445 30.769 7.70 0.00 34.98 2.52
2659 2921 7.775397 ACTTGTCATCAAAATGGACAAAAAG 57.225 32.000 7.70 0.11 34.98 2.27
2660 2922 9.829507 AATACTTGTCATCAAAATGGACAAAAA 57.170 25.926 7.70 0.55 34.98 1.94
2661 2923 9.829507 AAATACTTGTCATCAAAATGGACAAAA 57.170 25.926 7.70 0.84 34.98 2.44
2662 2924 9.829507 AAAATACTTGTCATCAAAATGGACAAA 57.170 25.926 7.70 0.00 34.98 2.83
2663 2925 9.474920 GAAAATACTTGTCATCAAAATGGACAA 57.525 29.630 0.00 0.00 34.59 3.18
2664 2926 7.807433 CGAAAATACTTGTCATCAAAATGGACA 59.193 33.333 0.00 0.00 33.42 4.02
2665 2927 7.273381 CCGAAAATACTTGTCATCAAAATGGAC 59.727 37.037 0.00 0.00 33.42 4.02
2666 2928 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
2667 2929 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
2668 2930 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
2669 2931 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
2670 2932 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
2671 2933 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
2672 2934 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
2673 2935 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
2674 2936 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
2675 2937 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
2676 2938 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
2677 2939 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2678 2940 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2679 2941 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2680 2942 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2681 2943 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2682 2944 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2683 2945 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2684 2946 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
2685 2947 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
2686 2948 1.856629 AATACTCCCTCCGTCCGAAA 58.143 50.000 0.00 0.00 0.00 3.46
2687 2949 1.856629 AAATACTCCCTCCGTCCGAA 58.143 50.000 0.00 0.00 0.00 4.30
2688 2950 1.753073 GAAAATACTCCCTCCGTCCGA 59.247 52.381 0.00 0.00 0.00 4.55
2689 2951 1.535437 CGAAAATACTCCCTCCGTCCG 60.535 57.143 0.00 0.00 0.00 4.79
2690 2952 1.753073 TCGAAAATACTCCCTCCGTCC 59.247 52.381 0.00 0.00 0.00 4.79
2691 2953 3.515330 TTCGAAAATACTCCCTCCGTC 57.485 47.619 0.00 0.00 0.00 4.79
2692 2954 3.512724 TCTTTCGAAAATACTCCCTCCGT 59.487 43.478 12.41 0.00 0.00 4.69
2693 2955 4.119442 TCTTTCGAAAATACTCCCTCCG 57.881 45.455 12.41 0.00 0.00 4.63
2694 2956 5.243207 TGTTCTTTCGAAAATACTCCCTCC 58.757 41.667 12.41 0.00 0.00 4.30
2695 2957 6.986904 ATGTTCTTTCGAAAATACTCCCTC 57.013 37.500 12.41 0.00 0.00 4.30
2696 2958 7.168905 AGAATGTTCTTTCGAAAATACTCCCT 58.831 34.615 12.41 7.95 32.55 4.20
2697 2959 7.379098 AGAATGTTCTTTCGAAAATACTCCC 57.621 36.000 12.41 6.18 32.55 4.30
2708 2970 6.477742 TCGCAATCATAAGAATGTTCTTTCG 58.522 36.000 12.73 5.65 44.70 3.46
2772 3034 8.216453 GTGCATTTTGATAGTTAAAGTTTGCAG 58.784 33.333 0.00 0.00 33.77 4.41
2829 3099 9.969001 AACAAGTTGGTATAGCCTCTAAAATTA 57.031 29.630 7.96 0.00 38.35 1.40
2852 3122 6.173339 GGAAGTGACATAGATTCCTCAAACA 58.827 40.000 0.00 0.00 38.53 2.83
2904 3177 9.730705 CAGTATACTTGATCCCAAATACATCAT 57.269 33.333 1.56 0.00 32.41 2.45
2925 3198 0.692476 TTGTGCCAGACTGCCAGTAT 59.308 50.000 0.00 0.00 0.00 2.12
3156 3430 6.449698 ACTGAATGTTGGCTAAAATGACTTG 58.550 36.000 0.00 0.00 0.00 3.16
3172 3446 7.285401 ACATTGACTGTTCCTAAAACTGAATGT 59.715 33.333 0.00 0.00 32.90 2.71
3339 3613 7.434492 CCACTTACTCTACAAGAAGAAGACAA 58.566 38.462 5.09 0.00 0.00 3.18
3349 3626 2.028112 TGGCAGCCACTTACTCTACAAG 60.028 50.000 11.22 0.00 0.00 3.16
3350 3627 1.974957 TGGCAGCCACTTACTCTACAA 59.025 47.619 11.22 0.00 0.00 2.41
3351 3628 1.639722 TGGCAGCCACTTACTCTACA 58.360 50.000 11.22 0.00 0.00 2.74
3433 3710 6.363577 ACCTTATCAAGTGCATTTACATCG 57.636 37.500 0.00 0.00 0.00 3.84
3503 3780 4.081087 ACAAAGATACCATGCCTTCTACGT 60.081 41.667 0.00 0.00 0.00 3.57
3547 3824 2.373502 CCTGAGGAGACCAGAAAAGGTT 59.626 50.000 0.00 0.00 43.38 3.50
3570 3847 2.937469 TATGAATTGCTGGCAAACCG 57.063 45.000 12.06 0.00 39.55 4.44
3756 4033 7.643569 AGCAAACAACATCACCATATAATCA 57.356 32.000 0.00 0.00 0.00 2.57
3806 4083 7.985634 ACTGAAAACAACAACATCAACATAC 57.014 32.000 0.00 0.00 0.00 2.39
3899 4179 3.886329 GAAGCGCAACCTGCTGCAC 62.886 63.158 11.47 0.00 43.14 4.57
3963 4368 2.744202 CTGTAACACCAGAGTTGCATCC 59.256 50.000 0.00 0.00 41.94 3.51
3973 4378 1.271325 TGCACCATCCTGTAACACCAG 60.271 52.381 0.00 0.00 0.00 4.00
4077 4482 5.858381 TCCTGAGCTTAACATACATCATCC 58.142 41.667 0.00 0.00 0.00 3.51
4114 4519 6.959639 AACCATAAGAAAGCAAGACAAGAA 57.040 33.333 0.00 0.00 0.00 2.52
4125 4542 8.793592 AGTTAAGGCAGTTAAACCATAAGAAAG 58.206 33.333 0.00 0.00 32.22 2.62
4145 4567 7.965107 GCCATACTGAGAATTGAACAAGTTAAG 59.035 37.037 0.00 0.00 0.00 1.85
4384 4810 7.862274 AGACAGATGGATCATAACCAAGATA 57.138 36.000 0.00 0.00 40.93 1.98
4391 4817 5.923204 AGTGGAAGACAGATGGATCATAAC 58.077 41.667 0.00 0.00 0.00 1.89
4493 4919 3.895232 AAGCTCATATGTCCTCACGTT 57.105 42.857 1.90 0.00 0.00 3.99
4749 5175 1.467734 CTCTCCAGCAGCAAACATGTC 59.532 52.381 0.00 0.00 0.00 3.06
4753 5179 2.346766 TTTCTCTCCAGCAGCAAACA 57.653 45.000 0.00 0.00 0.00 2.83
4768 5194 8.170730 AGAAAATAACCCAGGTAGTTCATTTCT 58.829 33.333 11.68 11.68 37.39 2.52
4773 5199 7.183112 TGGATAGAAAATAACCCAGGTAGTTCA 59.817 37.037 0.00 0.00 0.00 3.18
4971 5399 7.145323 GTGACGCTATAATTATGGCCAAAAAT 58.855 34.615 23.38 10.46 36.92 1.82
5019 5449 8.043710 GGAGATAAGCCTGTATAACAGCAATAT 58.956 37.037 1.43 0.38 44.63 1.28
5020 5450 7.235606 AGGAGATAAGCCTGTATAACAGCAATA 59.764 37.037 1.43 0.00 44.63 1.90
5021 5451 6.043706 AGGAGATAAGCCTGTATAACAGCAAT 59.956 38.462 1.43 0.00 44.63 3.56
5170 5600 3.690460 AGCTTGAATTGTTCCTAGGGTG 58.310 45.455 9.46 0.00 0.00 4.61
5190 5620 4.360563 CAGGCACACCGAGTTAATAGTAG 58.639 47.826 0.00 0.00 42.76 2.57
5193 5623 1.933853 GCAGGCACACCGAGTTAATAG 59.066 52.381 0.00 0.00 42.76 1.73
5200 5630 3.052082 CTTGGCAGGCACACCGAG 61.052 66.667 0.00 0.00 42.76 4.63
5274 5704 7.043565 CCTGATTTCATTTTAATGGAACTGGG 58.956 38.462 0.00 0.00 36.75 4.45
5317 5747 6.674861 TCACTTATTTTGGTATGGAGGGAGTA 59.325 38.462 0.00 0.00 0.00 2.59
5318 5748 5.491078 TCACTTATTTTGGTATGGAGGGAGT 59.509 40.000 0.00 0.00 0.00 3.85
5319 5749 5.823045 GTCACTTATTTTGGTATGGAGGGAG 59.177 44.000 0.00 0.00 0.00 4.30
5320 5750 5.491078 AGTCACTTATTTTGGTATGGAGGGA 59.509 40.000 0.00 0.00 0.00 4.20
5321 5751 5.755849 AGTCACTTATTTTGGTATGGAGGG 58.244 41.667 0.00 0.00 0.00 4.30
5322 5752 6.414732 TGAGTCACTTATTTTGGTATGGAGG 58.585 40.000 0.00 0.00 0.00 4.30
5323 5753 7.607991 AGTTGAGTCACTTATTTTGGTATGGAG 59.392 37.037 0.00 0.00 0.00 3.86
5324 5754 7.458397 AGTTGAGTCACTTATTTTGGTATGGA 58.542 34.615 0.00 0.00 0.00 3.41
5325 5755 7.687941 AGTTGAGTCACTTATTTTGGTATGG 57.312 36.000 0.00 0.00 0.00 2.74
5326 5756 9.398170 CAAAGTTGAGTCACTTATTTTGGTATG 57.602 33.333 0.00 0.00 35.87 2.39
5327 5757 9.131791 ACAAAGTTGAGTCACTTATTTTGGTAT 57.868 29.630 12.94 0.00 35.87 2.73
5328 5758 8.514330 ACAAAGTTGAGTCACTTATTTTGGTA 57.486 30.769 12.94 0.00 35.87 3.25
5329 5759 7.404671 ACAAAGTTGAGTCACTTATTTTGGT 57.595 32.000 12.94 1.21 35.87 3.67
5330 5760 8.621286 AGTACAAAGTTGAGTCACTTATTTTGG 58.379 33.333 12.94 0.78 35.87 3.28
5336 5766 9.880157 AAAGTTAGTACAAAGTTGAGTCACTTA 57.120 29.630 0.00 0.00 35.87 2.24
5337 5767 8.665685 CAAAGTTAGTACAAAGTTGAGTCACTT 58.334 33.333 0.00 0.00 38.74 3.16
5338 5768 7.822822 ACAAAGTTAGTACAAAGTTGAGTCACT 59.177 33.333 0.00 0.00 0.00 3.41
5339 5769 7.903431 CACAAAGTTAGTACAAAGTTGAGTCAC 59.097 37.037 0.00 0.00 0.00 3.67
5340 5770 7.065324 CCACAAAGTTAGTACAAAGTTGAGTCA 59.935 37.037 0.00 0.00 0.00 3.41
5341 5771 7.407337 CCACAAAGTTAGTACAAAGTTGAGTC 58.593 38.462 0.00 0.00 0.00 3.36
5342 5772 6.317893 CCCACAAAGTTAGTACAAAGTTGAGT 59.682 38.462 0.00 0.00 0.00 3.41
5343 5773 6.540914 TCCCACAAAGTTAGTACAAAGTTGAG 59.459 38.462 0.00 0.00 0.00 3.02
5344 5774 6.416415 TCCCACAAAGTTAGTACAAAGTTGA 58.584 36.000 0.00 0.00 0.00 3.18
5345 5775 6.317893 ACTCCCACAAAGTTAGTACAAAGTTG 59.682 38.462 0.00 0.00 0.00 3.16
5346 5776 6.420638 ACTCCCACAAAGTTAGTACAAAGTT 58.579 36.000 0.00 0.00 0.00 2.66
5347 5777 5.997843 ACTCCCACAAAGTTAGTACAAAGT 58.002 37.500 0.00 0.00 0.00 2.66
5348 5778 7.929785 TCTTACTCCCACAAAGTTAGTACAAAG 59.070 37.037 0.00 0.00 0.00 2.77
5349 5779 7.794041 TCTTACTCCCACAAAGTTAGTACAAA 58.206 34.615 0.00 0.00 0.00 2.83
5350 5780 7.364149 TCTTACTCCCACAAAGTTAGTACAA 57.636 36.000 0.00 0.00 0.00 2.41
5351 5781 6.982160 TCTTACTCCCACAAAGTTAGTACA 57.018 37.500 0.00 0.00 0.00 2.90
5357 5787 8.603304 ACTGTTATATCTTACTCCCACAAAGTT 58.397 33.333 0.00 0.00 0.00 2.66
5358 5788 8.147244 ACTGTTATATCTTACTCCCACAAAGT 57.853 34.615 0.00 0.00 0.00 2.66
5362 5792 9.880157 GTTTTACTGTTATATCTTACTCCCACA 57.120 33.333 0.00 0.00 0.00 4.17
5363 5793 9.880157 TGTTTTACTGTTATATCTTACTCCCAC 57.120 33.333 0.00 0.00 0.00 4.61
5365 5795 9.043079 GCTGTTTTACTGTTATATCTTACTCCC 57.957 37.037 0.00 0.00 0.00 4.30
5366 5796 9.595823 TGCTGTTTTACTGTTATATCTTACTCC 57.404 33.333 0.00 0.00 0.00 3.85
5368 5798 9.938280 TGTGCTGTTTTACTGTTATATCTTACT 57.062 29.630 0.00 0.00 0.00 2.24
5411 5841 7.040755 CCTGTATTGTAATCTGTTCACCAAACA 60.041 37.037 0.00 0.00 45.60 2.83
5463 5893 1.529244 AACAACCTGTGCTGGAGCC 60.529 57.895 2.07 0.00 41.18 4.70
5478 5908 3.694043 TGGAACCTGAATCGATCAACA 57.306 42.857 0.00 0.00 37.67 3.33
5531 5961 3.630013 AGCCTTGCTCTGTCGCCA 61.630 61.111 0.00 0.00 30.62 5.69
5553 5984 2.676471 GCCAACCCAGCGTCCATT 60.676 61.111 0.00 0.00 0.00 3.16
5562 5993 2.080336 CTTCCCTGGAAGCCAACCCA 62.080 60.000 12.73 0.00 43.95 4.51
5623 6054 2.563179 ACTGCTAATCACTGAAGACCGT 59.437 45.455 0.00 0.00 0.00 4.83
5703 6134 1.735386 CTCACAGCTGGAATGAGGTG 58.265 55.000 19.93 4.42 45.23 4.00
5707 6138 1.300963 GCCCTCACAGCTGGAATGA 59.699 57.895 19.93 11.88 0.00 2.57
5727 6158 1.961435 GCATCTTCCATTTGCTGGGGA 60.961 52.381 0.00 0.00 45.98 4.81
5813 6245 4.004982 GGTGTAGTGGCTAATTCCGAAAA 58.995 43.478 0.00 0.00 0.00 2.29
5817 6249 2.550978 CAGGTGTAGTGGCTAATTCCG 58.449 52.381 0.00 0.00 0.00 4.30
5818 6250 2.092914 AGCAGGTGTAGTGGCTAATTCC 60.093 50.000 0.00 0.00 34.25 3.01
6016 6454 4.024387 TGTTCTTCGATGTTTGTGGCTAAC 60.024 41.667 0.00 0.00 0.00 2.34
6019 6457 2.571212 TGTTCTTCGATGTTTGTGGCT 58.429 42.857 0.00 0.00 0.00 4.75
6032 6470 7.475771 AGAATCTATCGAGCATTTGTTCTTC 57.524 36.000 0.00 0.00 0.00 2.87
6046 6484 7.642194 GTGTCTGTTCTGAACTAGAATCTATCG 59.358 40.741 20.18 0.00 46.50 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.