Multiple sequence alignment - TraesCS4B01G331700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G331700 chr4B 100.000 2210 0 0 1 2210 621984450 621986659 0.000000e+00 4082.0
1 TraesCS4B01G331700 chr4B 79.907 214 40 3 1001 1212 558753852 558753640 1.060000e-33 154.0
2 TraesCS4B01G331700 chr4D 90.281 1852 86 30 9 1803 487044713 487046527 0.000000e+00 2337.0
3 TraesCS4B01G331700 chr5A 88.463 1985 122 38 8 1923 667940974 667942920 0.000000e+00 2298.0
4 TraesCS4B01G331700 chr2A 89.401 217 22 1 1001 1216 679982444 679982228 2.800000e-69 272.0
5 TraesCS4B01G331700 chr2A 87.383 214 27 0 1000 1213 679985807 679985594 1.690000e-61 246.0
6 TraesCS4B01G331700 chr2B 88.940 217 23 1 1001 1216 640085921 640085705 1.300000e-67 267.0
7 TraesCS4B01G331700 chr2B 88.152 211 25 0 1000 1210 640101848 640101638 3.640000e-63 252.0
8 TraesCS4B01G331700 chr2D 88.785 214 24 0 1000 1213 537448405 537448192 1.680000e-66 263.0
9 TraesCS4B01G331700 chr2D 88.208 212 25 0 1000 1211 537456949 537456738 1.010000e-63 254.0
10 TraesCS4B01G331700 chr6D 80.165 121 19 4 1800 1916 434168506 434168387 3.910000e-13 86.1
11 TraesCS4B01G331700 chr6D 97.500 40 0 1 2154 2192 433900792 433900831 1.420000e-07 67.6
12 TraesCS4B01G331700 chr6B 97.500 40 0 1 2154 2192 656169163 656169202 1.420000e-07 67.6
13 TraesCS4B01G331700 chr1B 100.000 28 0 0 1800 1827 577031455 577031482 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G331700 chr4B 621984450 621986659 2209 False 4082 4082 100.000 1 2210 1 chr4B.!!$F1 2209
1 TraesCS4B01G331700 chr4D 487044713 487046527 1814 False 2337 2337 90.281 9 1803 1 chr4D.!!$F1 1794
2 TraesCS4B01G331700 chr5A 667940974 667942920 1946 False 2298 2298 88.463 8 1923 1 chr5A.!!$F1 1915
3 TraesCS4B01G331700 chr2A 679982228 679985807 3579 True 259 272 88.392 1000 1216 2 chr2A.!!$R1 216

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
904 970 1.001974 TCCTTCCACTGTCCACAATCG 59.998 52.381 0.0 0.0 0.0 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2052 5516 0.109735 GTTCAGGTGCGCCTAAAAGC 60.11 55.0 20.73 6.06 44.97 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 6.777580 ACCTAAAAGTCCATTCACACTTTCAT 59.222 34.615 0.00 0.00 41.09 2.57
71 72 1.496429 CAGCCCATTGTATCCCTTCCT 59.504 52.381 0.00 0.00 0.00 3.36
72 73 2.091665 CAGCCCATTGTATCCCTTCCTT 60.092 50.000 0.00 0.00 0.00 3.36
73 74 2.175715 AGCCCATTGTATCCCTTCCTTC 59.824 50.000 0.00 0.00 0.00 3.46
74 75 2.753168 GCCCATTGTATCCCTTCCTTCC 60.753 54.545 0.00 0.00 0.00 3.46
75 76 2.513738 CCCATTGTATCCCTTCCTTCCA 59.486 50.000 0.00 0.00 0.00 3.53
76 77 3.555966 CCATTGTATCCCTTCCTTCCAC 58.444 50.000 0.00 0.00 0.00 4.02
77 78 3.203040 CCATTGTATCCCTTCCTTCCACT 59.797 47.826 0.00 0.00 0.00 4.00
78 79 4.325344 CCATTGTATCCCTTCCTTCCACTT 60.325 45.833 0.00 0.00 0.00 3.16
79 80 5.264395 CATTGTATCCCTTCCTTCCACTTT 58.736 41.667 0.00 0.00 0.00 2.66
80 81 5.333566 TTGTATCCCTTCCTTCCACTTTT 57.666 39.130 0.00 0.00 0.00 2.27
81 82 6.457159 TTGTATCCCTTCCTTCCACTTTTA 57.543 37.500 0.00 0.00 0.00 1.52
82 83 6.457159 TGTATCCCTTCCTTCCACTTTTAA 57.543 37.500 0.00 0.00 0.00 1.52
83 84 6.481643 TGTATCCCTTCCTTCCACTTTTAAG 58.518 40.000 0.00 0.00 0.00 1.85
122 125 7.482654 TTGAGAATATGGTTATCTTTCTGCG 57.517 36.000 0.00 0.00 0.00 5.18
261 265 7.846644 TTGTAATAACGTAACCCATACCTTG 57.153 36.000 0.00 0.00 0.00 3.61
301 308 2.396747 AAACGACGCCCGGAAAAAGC 62.397 55.000 0.73 0.00 43.93 3.51
308 315 2.399356 CCCGGAAAAAGCGAGCTCC 61.399 63.158 8.47 0.68 0.00 4.70
373 380 4.271816 CTCGATCGCACTCGGGGG 62.272 72.222 11.09 0.00 39.13 5.40
395 404 2.719979 GCAGATTCTGGCATGGCG 59.280 61.111 15.27 9.60 31.21 5.69
443 468 1.333308 CACCACGATGTTCTGTTTGCA 59.667 47.619 0.00 0.00 0.00 4.08
498 540 4.800023 TGTCCAATATCTACCCTCGAGAA 58.200 43.478 15.71 0.00 0.00 2.87
516 559 2.079925 GAAGACCACAAGGATGAGCAC 58.920 52.381 0.00 0.00 38.69 4.40
659 702 2.367648 ACCAGTCCACCACCACCA 60.368 61.111 0.00 0.00 0.00 4.17
660 703 2.113139 CCAGTCCACCACCACCAC 59.887 66.667 0.00 0.00 0.00 4.16
661 704 2.113139 CAGTCCACCACCACCACC 59.887 66.667 0.00 0.00 0.00 4.61
816 859 2.754254 GGTTTGGGATCCCGTGCC 60.754 66.667 26.03 21.44 39.42 5.01
822 865 4.489771 GGATCCCGTGCCCACCAG 62.490 72.222 0.00 0.00 0.00 4.00
823 866 4.489771 GATCCCGTGCCCACCAGG 62.490 72.222 0.00 0.00 39.47 4.45
860 917 2.327325 ATACAGTCACACTCCCACCT 57.673 50.000 0.00 0.00 0.00 4.00
861 918 1.629043 TACAGTCACACTCCCACCTC 58.371 55.000 0.00 0.00 0.00 3.85
904 970 1.001974 TCCTTCCACTGTCCACAATCG 59.998 52.381 0.00 0.00 0.00 3.34
914 980 1.376424 CCACAATCGCAGAGCAGGT 60.376 57.895 0.00 0.00 43.63 4.00
915 981 1.642037 CCACAATCGCAGAGCAGGTG 61.642 60.000 0.00 0.00 43.63 4.00
916 982 1.376424 ACAATCGCAGAGCAGGTGG 60.376 57.895 0.00 0.00 43.63 4.61
917 983 1.376424 CAATCGCAGAGCAGGTGGT 60.376 57.895 0.00 0.00 43.63 4.16
985 1057 1.186200 ATCAGCGAGTCCTGTAGCAA 58.814 50.000 8.05 0.00 34.47 3.91
1116 4550 0.468226 AGTTCGGCAACTTCCAGACA 59.532 50.000 0.00 0.00 40.16 3.41
1240 4674 1.067250 GCTAGCTGCTTCCTCCTCG 59.933 63.158 7.79 0.00 38.95 4.63
1286 4720 1.000827 CGTGGAGGATCGAGAGGAATG 60.001 57.143 0.00 0.00 34.37 2.67
1339 4773 2.038295 CCTGATGGCTTAGCTTCTAGGG 59.962 54.545 3.59 3.21 0.00 3.53
1350 4784 4.860881 TCTAGGGGCGCAGGGAGG 62.861 72.222 10.83 0.00 0.00 4.30
1368 4804 3.817647 GGAGGCAAAGTATGATGTCCATC 59.182 47.826 0.22 0.22 36.71 3.51
1374 4810 1.345741 AGTATGATGTCCATCGGGCAG 59.654 52.381 3.04 0.00 40.63 4.85
1514 4950 6.078202 TCTTCAGAGAGAAAGCGTATATGG 57.922 41.667 0.00 0.00 35.40 2.74
1572 5008 0.319405 CGTACCAACCGTCTTTCCCT 59.681 55.000 0.00 0.00 0.00 4.20
1624 5060 1.818674 CCACCTAACCATCTTGTTGGC 59.181 52.381 0.00 0.00 40.68 4.52
1627 5063 2.108250 ACCTAACCATCTTGTTGGCACT 59.892 45.455 0.00 0.00 40.68 4.40
1628 5064 3.157087 CCTAACCATCTTGTTGGCACTT 58.843 45.455 0.00 0.00 40.68 3.16
1629 5065 3.057315 CCTAACCATCTTGTTGGCACTTG 60.057 47.826 0.00 0.00 40.68 3.16
1630 5066 0.675633 ACCATCTTGTTGGCACTTGC 59.324 50.000 0.00 0.00 40.68 4.01
1631 5067 0.675083 CCATCTTGTTGGCACTTGCA 59.325 50.000 3.15 0.00 44.36 4.08
1632 5068 1.068895 CCATCTTGTTGGCACTTGCAA 59.931 47.619 0.00 0.00 44.36 4.08
1633 5069 2.400399 CATCTTGTTGGCACTTGCAAG 58.600 47.619 24.84 24.84 44.36 4.01
1763 5201 1.338011 CGCCCAAAAATGCAGAATGGT 60.338 47.619 9.05 0.00 35.86 3.55
1766 5204 3.934579 GCCCAAAAATGCAGAATGGTTAG 59.065 43.478 9.05 0.00 35.86 2.34
1778 5216 7.801104 TGCAGAATGGTTAGGTTAATCTGATA 58.199 34.615 0.00 0.00 35.91 2.15
1813 5277 8.822805 AGTTTAGAGATGTAAACCCACTTATGA 58.177 33.333 8.52 0.00 41.83 2.15
1823 5287 8.380099 TGTAAACCCACTTATGATCTAACAGTT 58.620 33.333 0.00 0.00 0.00 3.16
1869 5333 8.097662 GGTAAAATGAACTATCCAGCTAGCTAT 58.902 37.037 18.86 11.19 0.00 2.97
1874 5338 9.535170 AATGAACTATCCAGCTAGCTATAACTA 57.465 33.333 18.86 4.41 0.00 2.24
1883 5347 7.500227 TCCAGCTAGCTATAACTAACTAAACGA 59.500 37.037 18.86 0.00 0.00 3.85
1893 5357 8.773404 ATAACTAACTAAACGAACTTGCAGAT 57.227 30.769 0.00 0.00 0.00 2.90
1900 5364 2.210116 ACGAACTTGCAGATGTCGTTT 58.790 42.857 9.97 0.00 0.00 3.60
1914 5378 7.026562 CAGATGTCGTTTATTTGCCATTTACA 58.973 34.615 0.00 0.00 0.00 2.41
1916 5380 7.701924 AGATGTCGTTTATTTGCCATTTACATG 59.298 33.333 0.00 0.00 0.00 3.21
1923 5387 9.108284 GTTTATTTGCCATTTACATGCCTAATT 57.892 29.630 0.00 0.00 0.00 1.40
1924 5388 8.885494 TTATTTGCCATTTACATGCCTAATTC 57.115 30.769 0.00 0.00 0.00 2.17
1925 5389 4.935352 TGCCATTTACATGCCTAATTCC 57.065 40.909 0.00 0.00 0.00 3.01
1926 5390 3.640967 TGCCATTTACATGCCTAATTCCC 59.359 43.478 0.00 0.00 0.00 3.97
1927 5391 3.897505 GCCATTTACATGCCTAATTCCCT 59.102 43.478 0.00 0.00 0.00 4.20
1928 5392 4.021981 GCCATTTACATGCCTAATTCCCTC 60.022 45.833 0.00 0.00 0.00 4.30
1929 5393 4.216257 CCATTTACATGCCTAATTCCCTCG 59.784 45.833 0.00 0.00 0.00 4.63
1930 5394 2.543777 TACATGCCTAATTCCCTCGC 57.456 50.000 0.00 0.00 0.00 5.03
1931 5395 0.546122 ACATGCCTAATTCCCTCGCA 59.454 50.000 0.00 0.00 0.00 5.10
1932 5396 1.064758 ACATGCCTAATTCCCTCGCAA 60.065 47.619 0.00 0.00 32.35 4.85
1933 5397 2.023673 CATGCCTAATTCCCTCGCAAA 58.976 47.619 0.00 0.00 32.35 3.68
1934 5398 2.208132 TGCCTAATTCCCTCGCAAAA 57.792 45.000 0.00 0.00 0.00 2.44
1935 5399 2.520069 TGCCTAATTCCCTCGCAAAAA 58.480 42.857 0.00 0.00 0.00 1.94
1968 5432 6.238648 ACCTAATTGAGTTACTTGTCCAAGG 58.761 40.000 11.45 0.00 42.53 3.61
1969 5433 6.043938 ACCTAATTGAGTTACTTGTCCAAGGA 59.956 38.462 11.45 0.00 42.53 3.36
1970 5434 6.595716 CCTAATTGAGTTACTTGTCCAAGGAG 59.404 42.308 11.45 0.00 42.53 3.69
1971 5435 5.825593 ATTGAGTTACTTGTCCAAGGAGA 57.174 39.130 11.45 0.00 42.53 3.71
1972 5436 5.825593 TTGAGTTACTTGTCCAAGGAGAT 57.174 39.130 11.45 0.00 42.53 2.75
1973 5437 5.407407 TGAGTTACTTGTCCAAGGAGATC 57.593 43.478 11.45 5.65 42.53 2.75
1974 5438 4.838423 TGAGTTACTTGTCCAAGGAGATCA 59.162 41.667 11.45 7.86 42.53 2.92
1975 5439 5.306937 TGAGTTACTTGTCCAAGGAGATCAA 59.693 40.000 11.45 0.00 42.53 2.57
1976 5440 6.013379 TGAGTTACTTGTCCAAGGAGATCAAT 60.013 38.462 11.45 0.00 42.53 2.57
1977 5441 6.784031 AGTTACTTGTCCAAGGAGATCAATT 58.216 36.000 11.45 0.00 42.53 2.32
1978 5442 6.881602 AGTTACTTGTCCAAGGAGATCAATTC 59.118 38.462 11.45 0.00 42.53 2.17
1979 5443 5.246981 ACTTGTCCAAGGAGATCAATTCA 57.753 39.130 11.45 0.00 42.53 2.57
1980 5444 5.006386 ACTTGTCCAAGGAGATCAATTCAC 58.994 41.667 11.45 0.00 42.53 3.18
1981 5445 4.916041 TGTCCAAGGAGATCAATTCACT 57.084 40.909 0.00 0.00 0.00 3.41
1982 5446 6.013379 ACTTGTCCAAGGAGATCAATTCACTA 60.013 38.462 11.45 0.00 42.53 2.74
1983 5447 5.982356 TGTCCAAGGAGATCAATTCACTAG 58.018 41.667 0.00 0.00 0.00 2.57
1984 5448 5.104776 TGTCCAAGGAGATCAATTCACTAGG 60.105 44.000 0.00 0.00 0.00 3.02
1985 5449 4.410228 TCCAAGGAGATCAATTCACTAGGG 59.590 45.833 0.00 0.00 0.00 3.53
1986 5450 4.164988 CCAAGGAGATCAATTCACTAGGGT 59.835 45.833 0.00 0.00 0.00 4.34
1987 5451 5.339530 CCAAGGAGATCAATTCACTAGGGTT 60.340 44.000 0.00 0.00 0.00 4.11
1988 5452 6.183347 CAAGGAGATCAATTCACTAGGGTTT 58.817 40.000 0.00 0.00 0.00 3.27
1989 5453 6.394345 AGGAGATCAATTCACTAGGGTTTT 57.606 37.500 0.00 0.00 0.00 2.43
1990 5454 6.183347 AGGAGATCAATTCACTAGGGTTTTG 58.817 40.000 0.00 0.00 0.00 2.44
1991 5455 5.358160 GGAGATCAATTCACTAGGGTTTTGG 59.642 44.000 8.95 0.00 0.00 3.28
1992 5456 4.706962 AGATCAATTCACTAGGGTTTTGGC 59.293 41.667 8.95 3.89 0.00 4.52
1993 5457 4.112634 TCAATTCACTAGGGTTTTGGCT 57.887 40.909 8.95 0.00 0.00 4.75
1994 5458 3.826157 TCAATTCACTAGGGTTTTGGCTG 59.174 43.478 8.95 0.00 0.00 4.85
1995 5459 1.616159 TTCACTAGGGTTTTGGCTGC 58.384 50.000 0.00 0.00 0.00 5.25
1996 5460 0.771127 TCACTAGGGTTTTGGCTGCT 59.229 50.000 0.00 0.00 0.00 4.24
1997 5461 1.982226 TCACTAGGGTTTTGGCTGCTA 59.018 47.619 0.00 0.00 0.00 3.49
1998 5462 2.373836 TCACTAGGGTTTTGGCTGCTAA 59.626 45.455 0.00 0.00 0.00 3.09
1999 5463 3.010138 TCACTAGGGTTTTGGCTGCTAAT 59.990 43.478 0.00 0.00 0.00 1.73
2000 5464 3.763897 CACTAGGGTTTTGGCTGCTAATT 59.236 43.478 0.00 0.00 0.00 1.40
2001 5465 4.017126 ACTAGGGTTTTGGCTGCTAATTC 58.983 43.478 0.00 0.00 0.00 2.17
2002 5466 2.888212 AGGGTTTTGGCTGCTAATTCA 58.112 42.857 0.00 0.00 0.00 2.57
2003 5467 3.238597 AGGGTTTTGGCTGCTAATTCAA 58.761 40.909 0.00 0.00 0.00 2.69
2004 5468 3.645687 AGGGTTTTGGCTGCTAATTCAAA 59.354 39.130 0.00 0.00 0.00 2.69
2005 5469 3.745975 GGGTTTTGGCTGCTAATTCAAAC 59.254 43.478 0.00 1.07 0.00 2.93
2006 5470 3.745975 GGTTTTGGCTGCTAATTCAAACC 59.254 43.478 12.32 12.32 0.00 3.27
2007 5471 3.676291 TTTGGCTGCTAATTCAAACCC 57.324 42.857 0.00 0.00 0.00 4.11
2008 5472 2.300956 TGGCTGCTAATTCAAACCCA 57.699 45.000 0.00 0.00 0.00 4.51
2009 5473 2.603021 TGGCTGCTAATTCAAACCCAA 58.397 42.857 0.00 0.00 0.00 4.12
2010 5474 2.968574 TGGCTGCTAATTCAAACCCAAA 59.031 40.909 0.00 0.00 0.00 3.28
2011 5475 3.389329 TGGCTGCTAATTCAAACCCAAAA 59.611 39.130 0.00 0.00 0.00 2.44
2012 5476 4.141620 TGGCTGCTAATTCAAACCCAAAAA 60.142 37.500 0.00 0.00 0.00 1.94
2036 5500 9.874205 AAAAAGAAGAGTCAAAAATGAATGTCA 57.126 25.926 0.00 0.00 0.00 3.58
2037 5501 9.874205 AAAAGAAGAGTCAAAAATGAATGTCAA 57.126 25.926 0.00 0.00 0.00 3.18
2038 5502 8.862550 AAGAAGAGTCAAAAATGAATGTCAAC 57.137 30.769 0.00 0.00 0.00 3.18
2039 5503 7.428826 AGAAGAGTCAAAAATGAATGTCAACC 58.571 34.615 0.00 0.00 0.00 3.77
2040 5504 6.089249 AGAGTCAAAAATGAATGTCAACCC 57.911 37.500 0.00 0.00 0.00 4.11
2041 5505 5.598005 AGAGTCAAAAATGAATGTCAACCCA 59.402 36.000 0.00 0.00 0.00 4.51
2042 5506 5.846203 AGTCAAAAATGAATGTCAACCCAG 58.154 37.500 0.00 0.00 0.00 4.45
2043 5507 5.598005 AGTCAAAAATGAATGTCAACCCAGA 59.402 36.000 0.00 0.00 0.00 3.86
2044 5508 5.922544 GTCAAAAATGAATGTCAACCCAGAG 59.077 40.000 0.00 0.00 0.00 3.35
2045 5509 5.832595 TCAAAAATGAATGTCAACCCAGAGA 59.167 36.000 0.00 0.00 0.00 3.10
2046 5510 6.323482 TCAAAAATGAATGTCAACCCAGAGAA 59.677 34.615 0.00 0.00 0.00 2.87
2047 5511 6.729690 AAAATGAATGTCAACCCAGAGAAA 57.270 33.333 0.00 0.00 0.00 2.52
2048 5512 5.712152 AATGAATGTCAACCCAGAGAAAC 57.288 39.130 0.00 0.00 0.00 2.78
2049 5513 4.163441 TGAATGTCAACCCAGAGAAACA 57.837 40.909 0.00 0.00 0.00 2.83
2050 5514 4.531854 TGAATGTCAACCCAGAGAAACAA 58.468 39.130 0.00 0.00 0.00 2.83
2051 5515 4.952957 TGAATGTCAACCCAGAGAAACAAA 59.047 37.500 0.00 0.00 0.00 2.83
2052 5516 5.067674 TGAATGTCAACCCAGAGAAACAAAG 59.932 40.000 0.00 0.00 0.00 2.77
2053 5517 2.687935 TGTCAACCCAGAGAAACAAAGC 59.312 45.455 0.00 0.00 0.00 3.51
2054 5518 2.952310 GTCAACCCAGAGAAACAAAGCT 59.048 45.455 0.00 0.00 0.00 3.74
2055 5519 3.381590 GTCAACCCAGAGAAACAAAGCTT 59.618 43.478 0.00 0.00 0.00 3.74
2056 5520 4.023291 TCAACCCAGAGAAACAAAGCTTT 58.977 39.130 5.69 5.69 0.00 3.51
2057 5521 4.466015 TCAACCCAGAGAAACAAAGCTTTT 59.534 37.500 9.53 0.00 0.00 2.27
2058 5522 5.654650 TCAACCCAGAGAAACAAAGCTTTTA 59.345 36.000 9.53 0.00 0.00 1.52
2059 5523 5.774498 ACCCAGAGAAACAAAGCTTTTAG 57.226 39.130 9.53 1.55 0.00 1.85
2060 5524 4.584743 ACCCAGAGAAACAAAGCTTTTAGG 59.415 41.667 9.53 0.74 0.00 2.69
2061 5525 4.550422 CCAGAGAAACAAAGCTTTTAGGC 58.450 43.478 9.53 0.00 0.00 3.93
2062 5526 4.222114 CAGAGAAACAAAGCTTTTAGGCG 58.778 43.478 9.53 0.00 37.29 5.52
2063 5527 2.980476 GAGAAACAAAGCTTTTAGGCGC 59.020 45.455 9.53 0.00 37.29 6.53
2064 5528 2.360801 AGAAACAAAGCTTTTAGGCGCA 59.639 40.909 9.53 0.00 37.29 6.09
2065 5529 2.134201 AACAAAGCTTTTAGGCGCAC 57.866 45.000 9.53 0.00 37.29 5.34
2066 5530 0.313987 ACAAAGCTTTTAGGCGCACC 59.686 50.000 9.53 0.00 37.29 5.01
2076 5540 4.371975 GGCGCACCTGAACTACAA 57.628 55.556 10.83 0.00 0.00 2.41
2077 5541 2.624169 GGCGCACCTGAACTACAAA 58.376 52.632 10.83 0.00 0.00 2.83
2078 5542 0.517316 GGCGCACCTGAACTACAAAG 59.483 55.000 10.83 0.00 0.00 2.77
2079 5543 1.226746 GCGCACCTGAACTACAAAGT 58.773 50.000 0.30 0.00 37.65 2.66
2080 5544 1.069906 GCGCACCTGAACTACAAAGTG 60.070 52.381 0.30 0.00 35.62 3.16
2081 5545 2.479837 CGCACCTGAACTACAAAGTGA 58.520 47.619 0.00 0.00 35.62 3.41
2082 5546 2.476619 CGCACCTGAACTACAAAGTGAG 59.523 50.000 0.00 0.00 35.62 3.51
2083 5547 2.808543 GCACCTGAACTACAAAGTGAGG 59.191 50.000 0.00 0.00 40.10 3.86
2084 5548 2.808543 CACCTGAACTACAAAGTGAGGC 59.191 50.000 0.00 0.00 38.77 4.70
2085 5549 2.706190 ACCTGAACTACAAAGTGAGGCT 59.294 45.455 0.00 0.00 38.77 4.58
2086 5550 3.070018 CCTGAACTACAAAGTGAGGCTG 58.930 50.000 0.00 0.00 35.62 4.85
2087 5551 3.495100 CCTGAACTACAAAGTGAGGCTGT 60.495 47.826 0.00 0.00 35.62 4.40
2088 5552 3.466836 TGAACTACAAAGTGAGGCTGTG 58.533 45.455 0.00 0.00 38.41 3.66
2089 5553 2.550830 ACTACAAAGTGAGGCTGTGG 57.449 50.000 0.00 0.00 36.74 4.17
2090 5554 1.160137 CTACAAAGTGAGGCTGTGGC 58.840 55.000 0.00 0.00 36.74 5.01
2091 5555 0.764890 TACAAAGTGAGGCTGTGGCT 59.235 50.000 0.00 0.00 42.48 4.75
2092 5556 0.764890 ACAAAGTGAGGCTGTGGCTA 59.235 50.000 0.00 0.00 38.98 3.93
2093 5557 1.142870 ACAAAGTGAGGCTGTGGCTAA 59.857 47.619 0.00 0.00 38.98 3.09
2094 5558 2.224867 ACAAAGTGAGGCTGTGGCTAAT 60.225 45.455 0.00 0.00 38.98 1.73
2095 5559 2.409948 AAGTGAGGCTGTGGCTAATC 57.590 50.000 0.00 0.00 38.98 1.75
2096 5560 1.279496 AGTGAGGCTGTGGCTAATCA 58.721 50.000 0.00 0.00 38.98 2.57
2097 5561 1.209019 AGTGAGGCTGTGGCTAATCAG 59.791 52.381 0.00 0.00 38.98 2.90
2098 5562 1.208052 GTGAGGCTGTGGCTAATCAGA 59.792 52.381 0.00 0.00 38.98 3.27
2099 5563 1.208052 TGAGGCTGTGGCTAATCAGAC 59.792 52.381 0.00 0.00 38.98 3.51
2100 5564 0.543749 AGGCTGTGGCTAATCAGACC 59.456 55.000 0.00 0.00 40.25 3.85
2101 5565 0.811616 GGCTGTGGCTAATCAGACCG 60.812 60.000 0.00 0.00 38.73 4.79
2102 5566 1.432270 GCTGTGGCTAATCAGACCGC 61.432 60.000 0.00 0.00 34.02 5.68
2103 5567 0.176680 CTGTGGCTAATCAGACCGCT 59.823 55.000 0.00 0.00 34.98 5.52
2104 5568 1.409064 CTGTGGCTAATCAGACCGCTA 59.591 52.381 0.00 0.00 34.98 4.26
2105 5569 1.828595 TGTGGCTAATCAGACCGCTAA 59.171 47.619 0.00 0.00 34.98 3.09
2106 5570 2.202566 GTGGCTAATCAGACCGCTAAC 58.797 52.381 0.00 0.00 0.00 2.34
2107 5571 1.828595 TGGCTAATCAGACCGCTAACA 59.171 47.619 0.00 0.00 0.00 2.41
2108 5572 2.434336 TGGCTAATCAGACCGCTAACAT 59.566 45.455 0.00 0.00 0.00 2.71
2109 5573 3.060602 GGCTAATCAGACCGCTAACATC 58.939 50.000 0.00 0.00 0.00 3.06
2110 5574 3.060602 GCTAATCAGACCGCTAACATCC 58.939 50.000 0.00 0.00 0.00 3.51
2111 5575 3.243907 GCTAATCAGACCGCTAACATCCT 60.244 47.826 0.00 0.00 0.00 3.24
2112 5576 4.022242 GCTAATCAGACCGCTAACATCCTA 60.022 45.833 0.00 0.00 0.00 2.94
2113 5577 4.592485 AATCAGACCGCTAACATCCTAG 57.408 45.455 0.00 0.00 0.00 3.02
2114 5578 3.292492 TCAGACCGCTAACATCCTAGA 57.708 47.619 0.00 0.00 0.00 2.43
2115 5579 3.628008 TCAGACCGCTAACATCCTAGAA 58.372 45.455 0.00 0.00 0.00 2.10
2116 5580 3.632604 TCAGACCGCTAACATCCTAGAAG 59.367 47.826 0.00 0.00 0.00 2.85
2117 5581 3.632604 CAGACCGCTAACATCCTAGAAGA 59.367 47.826 0.00 0.00 0.00 2.87
2118 5582 4.098044 CAGACCGCTAACATCCTAGAAGAA 59.902 45.833 0.00 0.00 0.00 2.52
2119 5583 4.339814 AGACCGCTAACATCCTAGAAGAAG 59.660 45.833 0.00 0.00 0.00 2.85
2120 5584 4.279145 ACCGCTAACATCCTAGAAGAAGA 58.721 43.478 0.00 0.00 0.00 2.87
2121 5585 4.896482 ACCGCTAACATCCTAGAAGAAGAT 59.104 41.667 0.00 0.00 0.00 2.40
2122 5586 5.364157 ACCGCTAACATCCTAGAAGAAGATT 59.636 40.000 0.00 0.00 0.00 2.40
2123 5587 6.127026 ACCGCTAACATCCTAGAAGAAGATTT 60.127 38.462 0.00 0.00 0.00 2.17
2124 5588 6.201806 CCGCTAACATCCTAGAAGAAGATTTG 59.798 42.308 0.00 0.00 0.00 2.32
2125 5589 6.201806 CGCTAACATCCTAGAAGAAGATTTGG 59.798 42.308 0.00 0.00 0.00 3.28
2126 5590 6.484977 GCTAACATCCTAGAAGAAGATTTGGG 59.515 42.308 0.00 0.00 0.00 4.12
2127 5591 6.642733 AACATCCTAGAAGAAGATTTGGGA 57.357 37.500 0.00 0.00 0.00 4.37
2128 5592 6.245890 ACATCCTAGAAGAAGATTTGGGAG 57.754 41.667 0.00 0.00 0.00 4.30
2129 5593 5.131809 ACATCCTAGAAGAAGATTTGGGAGG 59.868 44.000 0.00 0.00 0.00 4.30
2130 5594 4.960332 TCCTAGAAGAAGATTTGGGAGGA 58.040 43.478 0.00 0.00 0.00 3.71
2131 5595 4.717280 TCCTAGAAGAAGATTTGGGAGGAC 59.283 45.833 0.00 0.00 0.00 3.85
2132 5596 4.719273 CCTAGAAGAAGATTTGGGAGGACT 59.281 45.833 0.00 0.00 0.00 3.85
2133 5597 4.835284 AGAAGAAGATTTGGGAGGACTC 57.165 45.455 0.00 0.00 0.00 3.36
2144 5608 2.845363 GGAGGACTCCGTTGGTTAAA 57.155 50.000 2.05 0.00 40.36 1.52
2145 5609 3.130280 GGAGGACTCCGTTGGTTAAAA 57.870 47.619 2.05 0.00 40.36 1.52
2146 5610 2.810274 GGAGGACTCCGTTGGTTAAAAC 59.190 50.000 2.05 0.00 40.36 2.43
2147 5611 3.495629 GGAGGACTCCGTTGGTTAAAACT 60.496 47.826 2.05 0.00 40.36 2.66
2148 5612 4.262592 GGAGGACTCCGTTGGTTAAAACTA 60.263 45.833 2.05 0.00 40.36 2.24
2149 5613 5.485620 GAGGACTCCGTTGGTTAAAACTAT 58.514 41.667 0.00 0.00 0.00 2.12
2150 5614 5.485620 AGGACTCCGTTGGTTAAAACTATC 58.514 41.667 0.00 0.00 0.00 2.08
2151 5615 5.012354 AGGACTCCGTTGGTTAAAACTATCA 59.988 40.000 0.00 0.00 0.00 2.15
2152 5616 5.702209 GGACTCCGTTGGTTAAAACTATCAA 59.298 40.000 0.00 0.00 0.00 2.57
2153 5617 6.128363 GGACTCCGTTGGTTAAAACTATCAAG 60.128 42.308 0.00 0.00 0.00 3.02
2154 5618 6.293698 ACTCCGTTGGTTAAAACTATCAAGT 58.706 36.000 0.00 0.00 37.65 3.16
2155 5619 6.426025 ACTCCGTTGGTTAAAACTATCAAGTC 59.574 38.462 0.00 0.00 33.75 3.01
2156 5620 5.702209 TCCGTTGGTTAAAACTATCAAGTCC 59.298 40.000 0.00 0.00 33.75 3.85
2157 5621 5.390145 CCGTTGGTTAAAACTATCAAGTCCG 60.390 44.000 0.00 0.00 33.75 4.79
2158 5622 5.406175 CGTTGGTTAAAACTATCAAGTCCGA 59.594 40.000 0.00 0.00 33.75 4.55
2159 5623 6.091713 CGTTGGTTAAAACTATCAAGTCCGAT 59.908 38.462 0.00 0.00 33.75 4.18
2160 5624 7.461918 GTTGGTTAAAACTATCAAGTCCGATC 58.538 38.462 0.00 0.00 33.75 3.69
2161 5625 6.110707 TGGTTAAAACTATCAAGTCCGATCC 58.889 40.000 0.00 0.00 33.75 3.36
2162 5626 6.110707 GGTTAAAACTATCAAGTCCGATCCA 58.889 40.000 0.00 0.00 33.75 3.41
2163 5627 6.766467 GGTTAAAACTATCAAGTCCGATCCAT 59.234 38.462 0.00 0.00 33.75 3.41
2164 5628 7.929785 GGTTAAAACTATCAAGTCCGATCCATA 59.070 37.037 0.00 0.00 33.75 2.74
2165 5629 9.321562 GTTAAAACTATCAAGTCCGATCCATAA 57.678 33.333 0.00 0.00 33.75 1.90
2169 5633 9.712305 AAACTATCAAGTCCGATCCATAATAAG 57.288 33.333 0.00 0.00 33.75 1.73
2170 5634 8.423906 ACTATCAAGTCCGATCCATAATAAGT 57.576 34.615 0.00 0.00 0.00 2.24
2171 5635 8.307483 ACTATCAAGTCCGATCCATAATAAGTG 58.693 37.037 0.00 0.00 0.00 3.16
2172 5636 6.479972 TCAAGTCCGATCCATAATAAGTGT 57.520 37.500 0.00 0.00 0.00 3.55
2173 5637 6.513180 TCAAGTCCGATCCATAATAAGTGTC 58.487 40.000 0.00 0.00 0.00 3.67
2174 5638 5.122512 AGTCCGATCCATAATAAGTGTCG 57.877 43.478 0.00 0.00 0.00 4.35
2175 5639 3.673809 GTCCGATCCATAATAAGTGTCGC 59.326 47.826 0.00 0.00 0.00 5.19
2176 5640 3.319689 TCCGATCCATAATAAGTGTCGCA 59.680 43.478 0.00 0.00 0.00 5.10
2177 5641 3.675225 CCGATCCATAATAAGTGTCGCAG 59.325 47.826 0.00 0.00 0.00 5.18
2178 5642 4.299155 CGATCCATAATAAGTGTCGCAGT 58.701 43.478 0.00 0.00 0.00 4.40
2179 5643 4.745125 CGATCCATAATAAGTGTCGCAGTT 59.255 41.667 5.48 5.48 0.00 3.16
2180 5644 5.234329 CGATCCATAATAAGTGTCGCAGTTT 59.766 40.000 5.46 0.00 0.00 2.66
2181 5645 5.794687 TCCATAATAAGTGTCGCAGTTTG 57.205 39.130 5.46 0.00 0.00 2.93
2182 5646 5.483811 TCCATAATAAGTGTCGCAGTTTGA 58.516 37.500 5.46 0.00 0.00 2.69
2183 5647 5.935206 TCCATAATAAGTGTCGCAGTTTGAA 59.065 36.000 5.46 0.00 0.00 2.69
2184 5648 6.021596 CCATAATAAGTGTCGCAGTTTGAAC 58.978 40.000 5.46 0.00 0.00 3.18
2185 5649 6.128282 CCATAATAAGTGTCGCAGTTTGAACT 60.128 38.462 5.46 0.00 40.60 3.01
2186 5650 7.064134 CCATAATAAGTGTCGCAGTTTGAACTA 59.936 37.037 5.46 0.00 37.08 2.24
2187 5651 6.854496 AATAAGTGTCGCAGTTTGAACTAA 57.146 33.333 5.46 0.00 37.08 2.24
2188 5652 4.795970 AAGTGTCGCAGTTTGAACTAAG 57.204 40.909 0.00 0.00 37.08 2.18
2189 5653 3.131396 AGTGTCGCAGTTTGAACTAAGG 58.869 45.455 0.00 0.00 37.08 2.69
2190 5654 2.870411 GTGTCGCAGTTTGAACTAAGGT 59.130 45.455 0.00 0.00 37.08 3.50
2191 5655 3.311596 GTGTCGCAGTTTGAACTAAGGTT 59.688 43.478 0.00 0.00 37.08 3.50
2192 5656 4.508861 GTGTCGCAGTTTGAACTAAGGTTA 59.491 41.667 0.00 0.00 37.08 2.85
2193 5657 4.508861 TGTCGCAGTTTGAACTAAGGTTAC 59.491 41.667 0.00 0.00 37.08 2.50
2194 5658 4.508861 GTCGCAGTTTGAACTAAGGTTACA 59.491 41.667 0.00 0.00 37.08 2.41
2195 5659 4.508861 TCGCAGTTTGAACTAAGGTTACAC 59.491 41.667 0.00 0.00 37.08 2.90
2196 5660 4.510340 CGCAGTTTGAACTAAGGTTACACT 59.490 41.667 0.00 0.00 37.08 3.55
2197 5661 5.693104 CGCAGTTTGAACTAAGGTTACACTA 59.307 40.000 0.00 0.00 37.08 2.74
2198 5662 6.201425 CGCAGTTTGAACTAAGGTTACACTAA 59.799 38.462 0.00 0.00 37.08 2.24
2199 5663 7.350467 GCAGTTTGAACTAAGGTTACACTAAC 58.650 38.462 0.00 0.00 37.08 2.34
2200 5664 7.519488 GCAGTTTGAACTAAGGTTACACTAACC 60.519 40.741 3.33 3.33 46.80 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.780186 GACTTTTAGGTGCTATATGGATAGTTT 57.220 33.333 0.00 0.00 37.87 2.66
2 3 8.376270 GGACTTTTAGGTGCTATATGGATAGTT 58.624 37.037 0.00 0.00 37.87 2.24
3 4 7.512746 TGGACTTTTAGGTGCTATATGGATAGT 59.487 37.037 0.00 0.00 37.87 2.12
4 5 7.907389 TGGACTTTTAGGTGCTATATGGATAG 58.093 38.462 0.00 0.00 38.51 2.08
5 6 7.865530 TGGACTTTTAGGTGCTATATGGATA 57.134 36.000 0.00 0.00 0.00 2.59
6 7 6.763715 TGGACTTTTAGGTGCTATATGGAT 57.236 37.500 0.00 0.00 0.00 3.41
15 16 3.821033 AGTGTGAATGGACTTTTAGGTGC 59.179 43.478 0.00 0.00 0.00 5.01
122 125 0.529992 GTCGTATGCAGCTACCCCAC 60.530 60.000 0.00 0.00 0.00 4.61
239 243 7.765819 ACTTCAAGGTATGGGTTACGTTATTAC 59.234 37.037 0.00 0.00 36.91 1.89
240 244 7.850193 ACTTCAAGGTATGGGTTACGTTATTA 58.150 34.615 0.00 0.00 36.91 0.98
241 245 6.714278 ACTTCAAGGTATGGGTTACGTTATT 58.286 36.000 0.00 0.00 36.91 1.40
242 246 6.303903 ACTTCAAGGTATGGGTTACGTTAT 57.696 37.500 0.00 0.00 36.91 1.89
275 282 1.223417 CCGGGCGTCGTTTGTACTTT 61.223 55.000 0.00 0.00 37.11 2.66
276 283 1.665599 CCGGGCGTCGTTTGTACTT 60.666 57.895 0.00 0.00 37.11 2.24
308 315 2.317609 CGGACGTGGAGCTTGGTTG 61.318 63.158 0.00 0.00 0.00 3.77
328 335 2.738743 GTATGGGGATTATGCATGGGG 58.261 52.381 10.16 0.00 0.00 4.96
334 341 1.165270 GTGCCGTATGGGGATTATGC 58.835 55.000 2.41 0.00 38.95 3.14
373 380 0.102481 CATGCCAGAATCTGCCAAGC 59.898 55.000 4.40 3.52 0.00 4.01
374 381 0.744874 CCATGCCAGAATCTGCCAAG 59.255 55.000 4.40 0.00 0.00 3.61
418 436 1.069090 AGAACATCGTGGTGCGTGT 59.931 52.632 0.00 0.00 42.13 4.49
443 468 2.017668 TTGTGGGCTTGGGGTGTCAT 62.018 55.000 0.00 0.00 0.00 3.06
498 540 0.036952 CGTGCTCATCCTTGTGGTCT 60.037 55.000 0.00 0.00 34.23 3.85
659 702 1.505353 GATCAACGGAGTCGACGGT 59.495 57.895 10.46 7.02 45.00 4.83
660 703 1.226603 GGATCAACGGAGTCGACGG 60.227 63.158 10.46 6.34 45.00 4.79
661 704 1.582937 CGGATCAACGGAGTCGACG 60.583 63.158 10.46 0.39 45.00 5.12
826 869 4.080919 TGACTGTATATATGGGCCATGAGC 60.081 45.833 29.14 14.00 42.60 4.26
827 870 5.046376 TGTGACTGTATATATGGGCCATGAG 60.046 44.000 29.14 15.47 0.00 2.90
828 871 4.843516 TGTGACTGTATATATGGGCCATGA 59.156 41.667 29.14 16.80 0.00 3.07
830 873 4.846367 AGTGTGACTGTATATATGGGCCAT 59.154 41.667 24.69 24.69 0.00 4.40
831 874 4.231273 AGTGTGACTGTATATATGGGCCA 58.769 43.478 9.61 9.61 0.00 5.36
832 875 4.322801 GGAGTGTGACTGTATATATGGGCC 60.323 50.000 0.00 0.00 0.00 5.80
833 876 4.322801 GGGAGTGTGACTGTATATATGGGC 60.323 50.000 0.00 0.00 0.00 5.36
836 879 5.540337 AGGTGGGAGTGTGACTGTATATATG 59.460 44.000 0.00 0.00 0.00 1.78
842 899 1.629043 GAGGTGGGAGTGTGACTGTA 58.371 55.000 0.00 0.00 0.00 2.74
904 970 1.673665 CCTTCACCACCTGCTCTGC 60.674 63.158 0.00 0.00 0.00 4.26
914 980 0.401395 ACCCTCTGGTTCCTTCACCA 60.401 55.000 0.00 0.00 44.75 4.17
915 981 0.036875 CACCCTCTGGTTCCTTCACC 59.963 60.000 0.00 0.00 44.75 4.02
916 982 1.002544 CTCACCCTCTGGTTCCTTCAC 59.997 57.143 0.00 0.00 44.75 3.18
917 983 1.352083 CTCACCCTCTGGTTCCTTCA 58.648 55.000 0.00 0.00 44.75 3.02
985 1057 2.081161 CCATGCCCCCTTAGCTCCT 61.081 63.158 0.00 0.00 0.00 3.69
1116 4550 1.449353 GAGGATGGAGATGCCGCTT 59.551 57.895 0.00 0.00 40.66 4.68
1240 4674 3.106672 CGATACCTAACTGTTGAGCGAC 58.893 50.000 2.69 0.00 0.00 5.19
1286 4720 4.664677 ACGCGACAGTGACTGGGC 62.665 66.667 15.93 17.62 35.51 5.36
1326 4760 0.249657 CTGCGCCCCTAGAAGCTAAG 60.250 60.000 4.18 0.00 0.00 2.18
1339 4773 2.893682 ATACTTTGCCTCCCTGCGCC 62.894 60.000 4.18 0.00 0.00 6.53
1350 4784 2.549754 CCCGATGGACATCATACTTTGC 59.450 50.000 12.33 0.00 37.69 3.68
1351 4785 2.549754 GCCCGATGGACATCATACTTTG 59.450 50.000 12.33 0.00 37.69 2.77
1352 4786 2.172505 TGCCCGATGGACATCATACTTT 59.827 45.455 12.33 0.00 37.69 2.66
1353 4787 1.768275 TGCCCGATGGACATCATACTT 59.232 47.619 12.33 0.00 37.69 2.24
1368 4804 4.155826 TCAAATCATCAACTAAACTGCCCG 59.844 41.667 0.00 0.00 0.00 6.13
1514 4950 3.444742 TGAAGTTCATCATGTGGAATGCC 59.555 43.478 0.08 0.00 0.00 4.40
1629 5065 3.427161 AAGAGAACAGTTGCAACTTGC 57.573 42.857 29.23 19.73 45.29 4.01
1630 5066 4.031028 CGAAAGAGAACAGTTGCAACTTG 58.969 43.478 29.23 23.97 37.08 3.16
1631 5067 3.689649 ACGAAAGAGAACAGTTGCAACTT 59.310 39.130 29.23 16.51 37.08 2.66
1632 5068 3.270877 ACGAAAGAGAACAGTTGCAACT 58.729 40.909 26.36 26.36 40.60 3.16
1633 5069 3.675467 ACGAAAGAGAACAGTTGCAAC 57.325 42.857 22.17 22.17 0.00 4.17
1647 5083 5.792631 ACACAAAGAAGAAACGTACGAAAG 58.207 37.500 24.41 0.00 0.00 2.62
1726 5162 1.017177 GCGTTGTACTTCATCCGGCA 61.017 55.000 0.00 0.00 0.00 5.69
1794 5232 8.768397 TGTTAGATCATAAGTGGGTTTACATCT 58.232 33.333 0.00 0.00 0.00 2.90
1834 5298 9.581289 TGGATAGTTCATTTTACCTGAGAAAAA 57.419 29.630 0.00 0.00 30.03 1.94
1835 5299 9.231297 CTGGATAGTTCATTTTACCTGAGAAAA 57.769 33.333 0.00 0.00 0.00 2.29
1836 5300 7.336931 GCTGGATAGTTCATTTTACCTGAGAAA 59.663 37.037 0.00 0.00 0.00 2.52
1837 5301 6.823689 GCTGGATAGTTCATTTTACCTGAGAA 59.176 38.462 0.00 0.00 0.00 2.87
1838 5302 6.156949 AGCTGGATAGTTCATTTTACCTGAGA 59.843 38.462 0.00 0.00 0.00 3.27
1839 5303 6.352516 AGCTGGATAGTTCATTTTACCTGAG 58.647 40.000 0.00 0.00 0.00 3.35
1850 5314 8.794553 GTTAGTTATAGCTAGCTGGATAGTTCA 58.205 37.037 27.68 3.79 0.00 3.18
1859 5323 8.956014 GTTCGTTTAGTTAGTTATAGCTAGCTG 58.044 37.037 27.68 4.37 34.92 4.24
1869 5333 7.654520 ACATCTGCAAGTTCGTTTAGTTAGTTA 59.345 33.333 0.00 0.00 33.76 2.24
1874 5338 4.084537 CGACATCTGCAAGTTCGTTTAGTT 60.085 41.667 0.00 0.00 33.76 2.24
1883 5347 4.917415 GCAAATAAACGACATCTGCAAGTT 59.083 37.500 0.00 0.00 33.76 2.66
1893 5357 5.574830 GCATGTAAATGGCAAATAAACGACA 59.425 36.000 0.00 0.00 0.00 4.35
1914 5378 2.435372 TTTGCGAGGGAATTAGGCAT 57.565 45.000 0.00 0.00 33.08 4.40
1942 5406 8.047310 CCTTGGACAAGTAACTCAATTAGGTAT 58.953 37.037 10.81 0.00 36.72 2.73
1943 5407 7.236019 TCCTTGGACAAGTAACTCAATTAGGTA 59.764 37.037 10.81 0.00 36.72 3.08
1944 5408 6.043938 TCCTTGGACAAGTAACTCAATTAGGT 59.956 38.462 10.81 0.00 36.72 3.08
1945 5409 6.472887 TCCTTGGACAAGTAACTCAATTAGG 58.527 40.000 10.81 0.00 36.72 2.69
1946 5410 7.386851 TCTCCTTGGACAAGTAACTCAATTAG 58.613 38.462 10.81 0.00 36.72 1.73
1947 5411 7.311092 TCTCCTTGGACAAGTAACTCAATTA 57.689 36.000 10.81 0.00 36.72 1.40
1948 5412 6.187727 TCTCCTTGGACAAGTAACTCAATT 57.812 37.500 10.81 0.00 36.72 2.32
1949 5413 5.825593 TCTCCTTGGACAAGTAACTCAAT 57.174 39.130 10.81 0.00 36.72 2.57
1950 5414 5.306937 TGATCTCCTTGGACAAGTAACTCAA 59.693 40.000 10.81 0.00 36.72 3.02
1951 5415 4.838423 TGATCTCCTTGGACAAGTAACTCA 59.162 41.667 10.81 6.08 36.72 3.41
1952 5416 5.407407 TGATCTCCTTGGACAAGTAACTC 57.593 43.478 10.81 3.93 36.72 3.01
1953 5417 5.825593 TTGATCTCCTTGGACAAGTAACT 57.174 39.130 10.81 0.00 36.72 2.24
1954 5418 6.655003 TGAATTGATCTCCTTGGACAAGTAAC 59.345 38.462 10.81 0.00 36.72 2.50
1955 5419 6.655003 GTGAATTGATCTCCTTGGACAAGTAA 59.345 38.462 10.81 0.00 36.72 2.24
1956 5420 6.013379 AGTGAATTGATCTCCTTGGACAAGTA 60.013 38.462 10.81 0.00 36.72 2.24
1957 5421 5.006386 GTGAATTGATCTCCTTGGACAAGT 58.994 41.667 10.81 0.00 36.72 3.16
1958 5422 5.251764 AGTGAATTGATCTCCTTGGACAAG 58.748 41.667 5.09 5.09 38.14 3.16
1959 5423 5.246981 AGTGAATTGATCTCCTTGGACAA 57.753 39.130 0.00 0.00 0.00 3.18
1960 5424 4.916041 AGTGAATTGATCTCCTTGGACA 57.084 40.909 0.00 0.00 0.00 4.02
1961 5425 5.363939 CCTAGTGAATTGATCTCCTTGGAC 58.636 45.833 0.00 0.00 30.27 4.02
1962 5426 4.410228 CCCTAGTGAATTGATCTCCTTGGA 59.590 45.833 0.00 0.00 30.27 3.53
1963 5427 4.164988 ACCCTAGTGAATTGATCTCCTTGG 59.835 45.833 0.00 0.00 0.00 3.61
1964 5428 5.365021 ACCCTAGTGAATTGATCTCCTTG 57.635 43.478 0.00 0.00 0.00 3.61
1965 5429 6.394345 AAACCCTAGTGAATTGATCTCCTT 57.606 37.500 0.00 0.00 0.00 3.36
1966 5430 6.183347 CAAAACCCTAGTGAATTGATCTCCT 58.817 40.000 0.00 0.00 0.00 3.69
1967 5431 5.358160 CCAAAACCCTAGTGAATTGATCTCC 59.642 44.000 0.00 0.00 0.00 3.71
1968 5432 5.163612 GCCAAAACCCTAGTGAATTGATCTC 60.164 44.000 0.00 0.00 0.00 2.75
1969 5433 4.706962 GCCAAAACCCTAGTGAATTGATCT 59.293 41.667 0.00 0.00 0.00 2.75
1970 5434 4.706962 AGCCAAAACCCTAGTGAATTGATC 59.293 41.667 0.00 0.00 0.00 2.92
1971 5435 4.463891 CAGCCAAAACCCTAGTGAATTGAT 59.536 41.667 0.00 0.00 0.00 2.57
1972 5436 3.826157 CAGCCAAAACCCTAGTGAATTGA 59.174 43.478 0.00 0.00 0.00 2.57
1973 5437 3.614870 GCAGCCAAAACCCTAGTGAATTG 60.615 47.826 0.00 0.00 0.00 2.32
1974 5438 2.562738 GCAGCCAAAACCCTAGTGAATT 59.437 45.455 0.00 0.00 0.00 2.17
1975 5439 2.171003 GCAGCCAAAACCCTAGTGAAT 58.829 47.619 0.00 0.00 0.00 2.57
1976 5440 1.144913 AGCAGCCAAAACCCTAGTGAA 59.855 47.619 0.00 0.00 0.00 3.18
1977 5441 0.771127 AGCAGCCAAAACCCTAGTGA 59.229 50.000 0.00 0.00 0.00 3.41
1978 5442 2.489938 TAGCAGCCAAAACCCTAGTG 57.510 50.000 0.00 0.00 0.00 2.74
1979 5443 3.739401 ATTAGCAGCCAAAACCCTAGT 57.261 42.857 0.00 0.00 0.00 2.57
1980 5444 4.016444 TGAATTAGCAGCCAAAACCCTAG 58.984 43.478 0.00 0.00 0.00 3.02
1981 5445 4.040936 TGAATTAGCAGCCAAAACCCTA 57.959 40.909 0.00 0.00 0.00 3.53
1982 5446 2.888212 TGAATTAGCAGCCAAAACCCT 58.112 42.857 0.00 0.00 0.00 4.34
1983 5447 3.676291 TTGAATTAGCAGCCAAAACCC 57.324 42.857 0.00 0.00 0.00 4.11
1984 5448 3.745975 GGTTTGAATTAGCAGCCAAAACC 59.254 43.478 0.00 0.00 31.92 3.27
1985 5449 3.745975 GGGTTTGAATTAGCAGCCAAAAC 59.254 43.478 1.57 1.57 35.96 2.43
1986 5450 3.389329 TGGGTTTGAATTAGCAGCCAAAA 59.611 39.130 0.00 0.00 33.86 2.44
1987 5451 2.968574 TGGGTTTGAATTAGCAGCCAAA 59.031 40.909 0.00 0.00 33.86 3.28
1988 5452 2.603021 TGGGTTTGAATTAGCAGCCAA 58.397 42.857 0.00 0.00 33.86 4.52
1989 5453 2.300956 TGGGTTTGAATTAGCAGCCA 57.699 45.000 0.00 0.00 34.40 4.75
1990 5454 3.676291 TTTGGGTTTGAATTAGCAGCC 57.324 42.857 0.00 0.00 0.00 4.85
2010 5474 9.874205 TGACATTCATTTTTGACTCTTCTTTTT 57.126 25.926 0.00 0.00 0.00 1.94
2011 5475 9.874205 TTGACATTCATTTTTGACTCTTCTTTT 57.126 25.926 0.00 0.00 0.00 2.27
2012 5476 9.305925 GTTGACATTCATTTTTGACTCTTCTTT 57.694 29.630 0.00 0.00 0.00 2.52
2013 5477 7.922811 GGTTGACATTCATTTTTGACTCTTCTT 59.077 33.333 0.00 0.00 0.00 2.52
2014 5478 7.428826 GGTTGACATTCATTTTTGACTCTTCT 58.571 34.615 0.00 0.00 0.00 2.85
2015 5479 6.642540 GGGTTGACATTCATTTTTGACTCTTC 59.357 38.462 0.00 0.00 0.00 2.87
2016 5480 6.098124 TGGGTTGACATTCATTTTTGACTCTT 59.902 34.615 0.00 0.00 0.00 2.85
2017 5481 5.598005 TGGGTTGACATTCATTTTTGACTCT 59.402 36.000 0.00 0.00 0.00 3.24
2018 5482 5.841810 TGGGTTGACATTCATTTTTGACTC 58.158 37.500 0.00 0.00 0.00 3.36
2019 5483 5.598005 TCTGGGTTGACATTCATTTTTGACT 59.402 36.000 0.00 0.00 0.00 3.41
2020 5484 5.841810 TCTGGGTTGACATTCATTTTTGAC 58.158 37.500 0.00 0.00 0.00 3.18
2021 5485 5.832595 TCTCTGGGTTGACATTCATTTTTGA 59.167 36.000 0.00 0.00 0.00 2.69
2022 5486 6.088016 TCTCTGGGTTGACATTCATTTTTG 57.912 37.500 0.00 0.00 0.00 2.44
2023 5487 6.729690 TTCTCTGGGTTGACATTCATTTTT 57.270 33.333 0.00 0.00 0.00 1.94
2024 5488 6.098124 TGTTTCTCTGGGTTGACATTCATTTT 59.902 34.615 0.00 0.00 0.00 1.82
2025 5489 5.598005 TGTTTCTCTGGGTTGACATTCATTT 59.402 36.000 0.00 0.00 0.00 2.32
2026 5490 5.139727 TGTTTCTCTGGGTTGACATTCATT 58.860 37.500 0.00 0.00 0.00 2.57
2027 5491 4.728772 TGTTTCTCTGGGTTGACATTCAT 58.271 39.130 0.00 0.00 0.00 2.57
2028 5492 4.163441 TGTTTCTCTGGGTTGACATTCA 57.837 40.909 0.00 0.00 0.00 2.57
2029 5493 5.514274 TTTGTTTCTCTGGGTTGACATTC 57.486 39.130 0.00 0.00 0.00 2.67
2030 5494 4.202151 GCTTTGTTTCTCTGGGTTGACATT 60.202 41.667 0.00 0.00 0.00 2.71
2031 5495 3.319122 GCTTTGTTTCTCTGGGTTGACAT 59.681 43.478 0.00 0.00 0.00 3.06
2032 5496 2.687935 GCTTTGTTTCTCTGGGTTGACA 59.312 45.455 0.00 0.00 0.00 3.58
2033 5497 2.952310 AGCTTTGTTTCTCTGGGTTGAC 59.048 45.455 0.00 0.00 0.00 3.18
2034 5498 3.297134 AGCTTTGTTTCTCTGGGTTGA 57.703 42.857 0.00 0.00 0.00 3.18
2035 5499 4.391405 AAAGCTTTGTTTCTCTGGGTTG 57.609 40.909 11.80 0.00 0.00 3.77
2036 5500 5.069119 CCTAAAAGCTTTGTTTCTCTGGGTT 59.931 40.000 13.54 0.00 0.00 4.11
2037 5501 4.584743 CCTAAAAGCTTTGTTTCTCTGGGT 59.415 41.667 13.54 0.00 0.00 4.51
2038 5502 4.559502 GCCTAAAAGCTTTGTTTCTCTGGG 60.560 45.833 13.54 7.61 0.00 4.45
2039 5503 4.550422 GCCTAAAAGCTTTGTTTCTCTGG 58.450 43.478 13.54 7.42 0.00 3.86
2040 5504 4.222114 CGCCTAAAAGCTTTGTTTCTCTG 58.778 43.478 13.54 0.00 0.00 3.35
2041 5505 3.304726 GCGCCTAAAAGCTTTGTTTCTCT 60.305 43.478 13.54 0.00 0.00 3.10
2042 5506 2.980476 GCGCCTAAAAGCTTTGTTTCTC 59.020 45.455 13.54 0.00 0.00 2.87
2043 5507 2.360801 TGCGCCTAAAAGCTTTGTTTCT 59.639 40.909 13.54 0.00 0.00 2.52
2044 5508 2.471370 GTGCGCCTAAAAGCTTTGTTTC 59.529 45.455 13.54 2.30 0.00 2.78
2045 5509 2.469826 GTGCGCCTAAAAGCTTTGTTT 58.530 42.857 13.54 0.00 0.00 2.83
2046 5510 1.269569 GGTGCGCCTAAAAGCTTTGTT 60.270 47.619 13.54 0.00 0.00 2.83
2047 5511 0.313987 GGTGCGCCTAAAAGCTTTGT 59.686 50.000 13.54 5.83 0.00 2.83
2048 5512 0.598065 AGGTGCGCCTAAAAGCTTTG 59.402 50.000 19.65 1.15 44.90 2.77
2049 5513 0.598065 CAGGTGCGCCTAAAAGCTTT 59.402 50.000 20.73 5.69 44.97 3.51
2050 5514 0.250727 TCAGGTGCGCCTAAAAGCTT 60.251 50.000 20.73 0.00 44.97 3.74
2051 5515 0.250727 TTCAGGTGCGCCTAAAAGCT 60.251 50.000 20.73 0.00 44.97 3.74
2052 5516 0.109735 GTTCAGGTGCGCCTAAAAGC 60.110 55.000 20.73 6.06 44.97 3.51
2053 5517 1.523758 AGTTCAGGTGCGCCTAAAAG 58.476 50.000 20.73 6.78 44.97 2.27
2054 5518 2.224329 TGTAGTTCAGGTGCGCCTAAAA 60.224 45.455 20.73 13.72 44.97 1.52
2055 5519 1.345089 TGTAGTTCAGGTGCGCCTAAA 59.655 47.619 20.73 8.54 44.97 1.85
2056 5520 0.970640 TGTAGTTCAGGTGCGCCTAA 59.029 50.000 20.73 0.00 44.97 2.69
2057 5521 0.970640 TTGTAGTTCAGGTGCGCCTA 59.029 50.000 20.73 0.34 44.97 3.93
2059 5523 0.517316 CTTTGTAGTTCAGGTGCGCC 59.483 55.000 8.71 8.71 0.00 6.53
2060 5524 1.069906 CACTTTGTAGTTCAGGTGCGC 60.070 52.381 0.00 0.00 30.26 6.09
2061 5525 2.476619 CTCACTTTGTAGTTCAGGTGCG 59.523 50.000 0.00 0.00 34.33 5.34
2062 5526 2.808543 CCTCACTTTGTAGTTCAGGTGC 59.191 50.000 0.00 0.00 34.33 5.01
2063 5527 2.808543 GCCTCACTTTGTAGTTCAGGTG 59.191 50.000 0.00 0.00 35.02 4.00
2064 5528 2.706190 AGCCTCACTTTGTAGTTCAGGT 59.294 45.455 0.00 0.00 30.26 4.00
2065 5529 3.070018 CAGCCTCACTTTGTAGTTCAGG 58.930 50.000 0.00 0.00 30.26 3.86
2066 5530 3.496130 CACAGCCTCACTTTGTAGTTCAG 59.504 47.826 0.00 0.00 30.26 3.02
2067 5531 3.466836 CACAGCCTCACTTTGTAGTTCA 58.533 45.455 0.00 0.00 30.26 3.18
2068 5532 2.808543 CCACAGCCTCACTTTGTAGTTC 59.191 50.000 0.00 0.00 30.26 3.01
2069 5533 2.851195 CCACAGCCTCACTTTGTAGTT 58.149 47.619 0.00 0.00 30.26 2.24
2070 5534 1.543429 GCCACAGCCTCACTTTGTAGT 60.543 52.381 0.00 0.00 34.00 2.73
2071 5535 1.160137 GCCACAGCCTCACTTTGTAG 58.840 55.000 0.00 0.00 0.00 2.74
2072 5536 0.764890 AGCCACAGCCTCACTTTGTA 59.235 50.000 0.00 0.00 41.25 2.41
2073 5537 0.764890 TAGCCACAGCCTCACTTTGT 59.235 50.000 0.00 0.00 41.25 2.83
2074 5538 1.896220 TTAGCCACAGCCTCACTTTG 58.104 50.000 0.00 0.00 41.25 2.77
2075 5539 2.040278 TGATTAGCCACAGCCTCACTTT 59.960 45.455 0.00 0.00 41.25 2.66
2076 5540 1.630369 TGATTAGCCACAGCCTCACTT 59.370 47.619 0.00 0.00 41.25 3.16
2077 5541 1.209019 CTGATTAGCCACAGCCTCACT 59.791 52.381 0.00 0.00 41.25 3.41
2078 5542 1.208052 TCTGATTAGCCACAGCCTCAC 59.792 52.381 0.00 0.00 41.25 3.51
2079 5543 1.208052 GTCTGATTAGCCACAGCCTCA 59.792 52.381 0.00 0.00 41.25 3.86
2080 5544 1.474143 GGTCTGATTAGCCACAGCCTC 60.474 57.143 0.00 0.00 41.25 4.70
2081 5545 0.543749 GGTCTGATTAGCCACAGCCT 59.456 55.000 0.00 0.00 41.25 4.58
2082 5546 0.811616 CGGTCTGATTAGCCACAGCC 60.812 60.000 0.00 0.00 41.25 4.85
2083 5547 1.432270 GCGGTCTGATTAGCCACAGC 61.432 60.000 0.00 0.00 40.32 4.40
2084 5548 0.176680 AGCGGTCTGATTAGCCACAG 59.823 55.000 0.00 0.00 35.72 3.66
2085 5549 1.480789 TAGCGGTCTGATTAGCCACA 58.519 50.000 0.00 0.00 0.00 4.17
2086 5550 2.202566 GTTAGCGGTCTGATTAGCCAC 58.797 52.381 0.00 0.00 0.00 5.01
2087 5551 1.828595 TGTTAGCGGTCTGATTAGCCA 59.171 47.619 0.00 0.00 0.00 4.75
2088 5552 2.596904 TGTTAGCGGTCTGATTAGCC 57.403 50.000 0.00 0.00 0.00 3.93
2089 5553 3.060602 GGATGTTAGCGGTCTGATTAGC 58.939 50.000 0.00 0.00 0.00 3.09
2090 5554 4.592485 AGGATGTTAGCGGTCTGATTAG 57.408 45.455 0.00 0.00 0.00 1.73
2091 5555 5.382616 TCTAGGATGTTAGCGGTCTGATTA 58.617 41.667 0.00 0.00 0.00 1.75
2092 5556 4.215908 TCTAGGATGTTAGCGGTCTGATT 58.784 43.478 0.00 0.00 0.00 2.57
2093 5557 3.833732 TCTAGGATGTTAGCGGTCTGAT 58.166 45.455 0.00 0.00 0.00 2.90
2094 5558 3.292492 TCTAGGATGTTAGCGGTCTGA 57.708 47.619 0.00 0.00 0.00 3.27
2095 5559 3.632604 TCTTCTAGGATGTTAGCGGTCTG 59.367 47.826 0.00 0.00 0.00 3.51
2096 5560 3.899726 TCTTCTAGGATGTTAGCGGTCT 58.100 45.455 0.00 0.00 0.00 3.85
2097 5561 4.338682 TCTTCTTCTAGGATGTTAGCGGTC 59.661 45.833 0.00 0.00 0.00 4.79
2098 5562 4.279145 TCTTCTTCTAGGATGTTAGCGGT 58.721 43.478 0.00 0.00 0.00 5.68
2099 5563 4.920640 TCTTCTTCTAGGATGTTAGCGG 57.079 45.455 0.00 0.00 0.00 5.52
2100 5564 6.201806 CCAAATCTTCTTCTAGGATGTTAGCG 59.798 42.308 0.00 0.00 0.00 4.26
2101 5565 6.484977 CCCAAATCTTCTTCTAGGATGTTAGC 59.515 42.308 0.00 0.00 0.00 3.09
2102 5566 7.796054 TCCCAAATCTTCTTCTAGGATGTTAG 58.204 38.462 0.00 0.00 0.00 2.34
2103 5567 7.147479 CCTCCCAAATCTTCTTCTAGGATGTTA 60.147 40.741 0.00 0.00 0.00 2.41
2104 5568 6.353429 CCTCCCAAATCTTCTTCTAGGATGTT 60.353 42.308 0.00 0.00 0.00 2.71
2105 5569 5.131809 CCTCCCAAATCTTCTTCTAGGATGT 59.868 44.000 0.00 0.00 0.00 3.06
2106 5570 5.367937 TCCTCCCAAATCTTCTTCTAGGATG 59.632 44.000 0.00 0.00 0.00 3.51
2107 5571 5.368230 GTCCTCCCAAATCTTCTTCTAGGAT 59.632 44.000 0.00 0.00 33.47 3.24
2108 5572 4.717280 GTCCTCCCAAATCTTCTTCTAGGA 59.283 45.833 0.00 0.00 0.00 2.94
2109 5573 4.719273 AGTCCTCCCAAATCTTCTTCTAGG 59.281 45.833 0.00 0.00 0.00 3.02
2110 5574 5.163353 GGAGTCCTCCCAAATCTTCTTCTAG 60.163 48.000 0.41 0.00 43.94 2.43
2111 5575 4.717280 GGAGTCCTCCCAAATCTTCTTCTA 59.283 45.833 0.41 0.00 43.94 2.10
2112 5576 3.521531 GGAGTCCTCCCAAATCTTCTTCT 59.478 47.826 0.41 0.00 43.94 2.85
2113 5577 3.680196 CGGAGTCCTCCCAAATCTTCTTC 60.680 52.174 7.77 0.00 46.96 2.87
2114 5578 2.237392 CGGAGTCCTCCCAAATCTTCTT 59.763 50.000 7.77 0.00 46.96 2.52
2115 5579 1.834263 CGGAGTCCTCCCAAATCTTCT 59.166 52.381 7.77 0.00 46.96 2.85
2116 5580 1.555533 ACGGAGTCCTCCCAAATCTTC 59.444 52.381 7.77 0.00 46.96 2.87
2117 5581 1.657804 ACGGAGTCCTCCCAAATCTT 58.342 50.000 7.77 0.00 46.96 2.40
2118 5582 1.279271 CAACGGAGTCCTCCCAAATCT 59.721 52.381 7.77 0.00 45.00 2.40
2119 5583 1.679032 CCAACGGAGTCCTCCCAAATC 60.679 57.143 7.77 0.00 45.00 2.17
2120 5584 0.328258 CCAACGGAGTCCTCCCAAAT 59.672 55.000 7.77 0.00 45.00 2.32
2121 5585 1.057851 ACCAACGGAGTCCTCCCAAA 61.058 55.000 7.77 0.00 45.00 3.28
2122 5586 1.057851 AACCAACGGAGTCCTCCCAA 61.058 55.000 7.77 0.00 45.00 4.12
2123 5587 0.178926 TAACCAACGGAGTCCTCCCA 60.179 55.000 7.77 0.00 45.00 4.37
2124 5588 0.978907 TTAACCAACGGAGTCCTCCC 59.021 55.000 7.77 0.00 45.00 4.30
2125 5589 2.810274 GTTTTAACCAACGGAGTCCTCC 59.190 50.000 7.77 3.09 45.00 4.30
2126 5590 3.736720 AGTTTTAACCAACGGAGTCCTC 58.263 45.455 7.77 0.00 45.00 3.71
2127 5591 3.851458 AGTTTTAACCAACGGAGTCCT 57.149 42.857 7.77 0.00 45.00 3.85
2128 5592 5.240121 TGATAGTTTTAACCAACGGAGTCC 58.760 41.667 0.00 0.00 45.00 3.85
2129 5593 6.426025 ACTTGATAGTTTTAACCAACGGAGTC 59.574 38.462 0.00 0.00 45.00 3.36
2130 5594 6.426025 GACTTGATAGTTTTAACCAACGGAGT 59.574 38.462 0.00 0.00 37.15 3.85
2131 5595 6.128363 GGACTTGATAGTTTTAACCAACGGAG 60.128 42.308 0.00 0.00 33.84 4.63
2132 5596 5.702209 GGACTTGATAGTTTTAACCAACGGA 59.298 40.000 0.00 0.00 33.84 4.69
2133 5597 5.390145 CGGACTTGATAGTTTTAACCAACGG 60.390 44.000 0.00 0.00 33.84 4.44
2134 5598 5.406175 TCGGACTTGATAGTTTTAACCAACG 59.594 40.000 0.00 0.00 33.84 4.10
2135 5599 6.790285 TCGGACTTGATAGTTTTAACCAAC 57.210 37.500 0.00 0.00 33.84 3.77
2136 5600 6.596497 GGATCGGACTTGATAGTTTTAACCAA 59.404 38.462 0.00 0.00 33.84 3.67
2137 5601 6.110707 GGATCGGACTTGATAGTTTTAACCA 58.889 40.000 0.00 0.00 33.84 3.67
2138 5602 6.110707 TGGATCGGACTTGATAGTTTTAACC 58.889 40.000 0.00 0.00 33.84 2.85
2139 5603 7.787725 ATGGATCGGACTTGATAGTTTTAAC 57.212 36.000 0.00 0.00 33.84 2.01
2143 5607 9.712305 CTTATTATGGATCGGACTTGATAGTTT 57.288 33.333 0.00 0.00 33.84 2.66
2144 5608 8.871125 ACTTATTATGGATCGGACTTGATAGTT 58.129 33.333 0.00 0.00 33.84 2.24
2145 5609 8.307483 CACTTATTATGGATCGGACTTGATAGT 58.693 37.037 0.00 0.00 37.31 2.12
2146 5610 8.307483 ACACTTATTATGGATCGGACTTGATAG 58.693 37.037 0.00 0.00 0.00 2.08
2147 5611 8.190326 ACACTTATTATGGATCGGACTTGATA 57.810 34.615 0.00 0.00 0.00 2.15
2148 5612 7.067496 ACACTTATTATGGATCGGACTTGAT 57.933 36.000 0.00 0.00 0.00 2.57
2149 5613 6.479972 ACACTTATTATGGATCGGACTTGA 57.520 37.500 0.00 0.00 0.00 3.02
2150 5614 5.402568 CGACACTTATTATGGATCGGACTTG 59.597 44.000 0.00 0.00 0.00 3.16
2151 5615 5.529791 CGACACTTATTATGGATCGGACTT 58.470 41.667 0.00 0.00 0.00 3.01
2152 5616 4.558898 GCGACACTTATTATGGATCGGACT 60.559 45.833 0.00 0.00 0.00 3.85
2153 5617 3.673809 GCGACACTTATTATGGATCGGAC 59.326 47.826 0.00 0.00 0.00 4.79
2154 5618 3.319689 TGCGACACTTATTATGGATCGGA 59.680 43.478 0.00 0.00 0.00 4.55
2155 5619 3.649073 TGCGACACTTATTATGGATCGG 58.351 45.455 0.00 0.00 0.00 4.18
2156 5620 4.299155 ACTGCGACACTTATTATGGATCG 58.701 43.478 0.00 0.00 0.00 3.69
2157 5621 6.257849 TCAAACTGCGACACTTATTATGGATC 59.742 38.462 0.00 0.00 0.00 3.36
2158 5622 6.112734 TCAAACTGCGACACTTATTATGGAT 58.887 36.000 0.00 0.00 0.00 3.41
2159 5623 5.483811 TCAAACTGCGACACTTATTATGGA 58.516 37.500 0.00 0.00 0.00 3.41
2160 5624 5.794687 TCAAACTGCGACACTTATTATGG 57.205 39.130 0.00 0.00 0.00 2.74
2161 5625 6.831769 AGTTCAAACTGCGACACTTATTATG 58.168 36.000 0.00 0.00 37.98 1.90
2162 5626 8.542497 TTAGTTCAAACTGCGACACTTATTAT 57.458 30.769 5.66 0.00 40.07 1.28
2163 5627 7.117236 CCTTAGTTCAAACTGCGACACTTATTA 59.883 37.037 5.66 0.00 40.07 0.98
2164 5628 6.073222 CCTTAGTTCAAACTGCGACACTTATT 60.073 38.462 5.66 0.00 40.07 1.40
2165 5629 5.408604 CCTTAGTTCAAACTGCGACACTTAT 59.591 40.000 5.66 0.00 40.07 1.73
2166 5630 4.748102 CCTTAGTTCAAACTGCGACACTTA 59.252 41.667 5.66 0.00 40.07 2.24
2167 5631 3.560068 CCTTAGTTCAAACTGCGACACTT 59.440 43.478 5.66 0.00 40.07 3.16
2168 5632 3.131396 CCTTAGTTCAAACTGCGACACT 58.869 45.455 5.66 0.00 40.07 3.55
2169 5633 2.870411 ACCTTAGTTCAAACTGCGACAC 59.130 45.455 5.66 0.00 40.07 3.67
2170 5634 3.188159 ACCTTAGTTCAAACTGCGACA 57.812 42.857 5.66 0.00 40.07 4.35
2171 5635 4.508861 TGTAACCTTAGTTCAAACTGCGAC 59.491 41.667 5.66 0.00 40.07 5.19
2172 5636 4.508861 GTGTAACCTTAGTTCAAACTGCGA 59.491 41.667 5.66 0.00 40.07 5.10
2173 5637 4.510340 AGTGTAACCTTAGTTCAAACTGCG 59.490 41.667 5.66 0.00 37.42 5.18
2174 5638 7.350467 GTTAGTGTAACCTTAGTTCAAACTGC 58.650 38.462 5.66 0.00 37.42 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.