Multiple sequence alignment - TraesCS4B01G331300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G331300 chr4B 100.000 4478 0 0 1 4478 621822632 621818155 0.000000e+00 8270
1 TraesCS4B01G331300 chr5A 95.866 2177 73 8 1565 3727 667328769 667326596 0.000000e+00 3506
2 TraesCS4B01G331300 chr5A 91.989 749 35 15 782 1525 667329509 667328781 0.000000e+00 1027
3 TraesCS4B01G331300 chr5A 86.139 202 18 5 4183 4384 667325937 667325746 4.540000e-50 209
4 TraesCS4B01G331300 chr4D 93.466 2219 99 26 1965 4165 486942426 486940236 0.000000e+00 3253
5 TraesCS4B01G331300 chr4D 93.969 1111 38 14 776 1878 486943664 486942575 0.000000e+00 1653
6 TraesCS4B01G331300 chr4D 92.135 89 4 1 1880 1965 486942541 486942453 6.080000e-24 122
7 TraesCS4B01G331300 chr2D 86.020 608 76 7 1 604 177453549 177452947 1.050000e-180 643
8 TraesCS4B01G331300 chr2D 84.590 610 78 14 1 604 642303950 642304549 3.860000e-165 592
9 TraesCS4B01G331300 chr7D 85.832 607 74 12 1 604 190088247 190087650 6.320000e-178 634
10 TraesCS4B01G331300 chr7D 85.222 609 74 14 1 604 161134766 161134169 2.960000e-171 612
11 TraesCS4B01G331300 chr7D 91.827 208 13 2 1675 1878 157759809 157760016 2.040000e-73 287
12 TraesCS4B01G331300 chr7B 84.959 605 85 5 1 602 477431969 477432570 3.830000e-170 608
13 TraesCS4B01G331300 chr7B 98.684 76 1 0 4382 4457 727134934 727134859 7.810000e-28 135
14 TraesCS4B01G331300 chr7B 97.368 76 2 0 4382 4457 421068890 421068815 3.640000e-26 130
15 TraesCS4B01G331300 chr6D 84.918 610 77 14 1 604 146943159 146943759 1.780000e-168 603
16 TraesCS4B01G331300 chr6D 84.691 614 77 14 1 604 437927150 437926544 8.290000e-167 597
17 TraesCS4B01G331300 chr5B 84.804 612 78 14 1 604 80203833 80203229 6.410000e-168 601
18 TraesCS4B01G331300 chr5B 84.502 613 78 16 1 604 80608310 80607706 1.390000e-164 590
19 TraesCS4B01G331300 chr4A 100.000 76 0 0 4382 4457 705244271 705244196 1.680000e-29 141
20 TraesCS4B01G331300 chr3B 100.000 76 0 0 4382 4457 564781290 564781215 1.680000e-29 141
21 TraesCS4B01G331300 chr3B 90.541 74 7 0 4384 4457 528679340 528679267 1.030000e-16 99
22 TraesCS4B01G331300 chr6B 94.937 79 4 0 4379 4457 643247049 643247127 1.690000e-24 124
23 TraesCS4B01G331300 chr6B 96.610 59 2 0 4380 4438 670906933 670906875 1.030000e-16 99
24 TraesCS4B01G331300 chr2B 95.946 74 3 0 4384 4457 769544936 769545009 2.190000e-23 121
25 TraesCS4B01G331300 chr3A 91.892 74 6 0 4381 4454 642169613 642169686 2.200000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G331300 chr4B 621818155 621822632 4477 True 8270.000000 8270 100.000000 1 4478 1 chr4B.!!$R1 4477
1 TraesCS4B01G331300 chr5A 667325746 667329509 3763 True 1580.666667 3506 91.331333 782 4384 3 chr5A.!!$R1 3602
2 TraesCS4B01G331300 chr4D 486940236 486943664 3428 True 1676.000000 3253 93.190000 776 4165 3 chr4D.!!$R1 3389
3 TraesCS4B01G331300 chr2D 177452947 177453549 602 True 643.000000 643 86.020000 1 604 1 chr2D.!!$R1 603
4 TraesCS4B01G331300 chr2D 642303950 642304549 599 False 592.000000 592 84.590000 1 604 1 chr2D.!!$F1 603
5 TraesCS4B01G331300 chr7D 190087650 190088247 597 True 634.000000 634 85.832000 1 604 1 chr7D.!!$R2 603
6 TraesCS4B01G331300 chr7D 161134169 161134766 597 True 612.000000 612 85.222000 1 604 1 chr7D.!!$R1 603
7 TraesCS4B01G331300 chr7B 477431969 477432570 601 False 608.000000 608 84.959000 1 602 1 chr7B.!!$F1 601
8 TraesCS4B01G331300 chr6D 146943159 146943759 600 False 603.000000 603 84.918000 1 604 1 chr6D.!!$F1 603
9 TraesCS4B01G331300 chr6D 437926544 437927150 606 True 597.000000 597 84.691000 1 604 1 chr6D.!!$R1 603
10 TraesCS4B01G331300 chr5B 80203229 80203833 604 True 601.000000 601 84.804000 1 604 1 chr5B.!!$R1 603
11 TraesCS4B01G331300 chr5B 80607706 80608310 604 True 590.000000 590 84.502000 1 604 1 chr5B.!!$R2 603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
795 821 0.042535 CGCGCTGAACGTCTTTTTCA 60.043 50.000 5.56 0.0 46.11 2.69 F
1635 1670 1.006086 TGTGCAGTGTGAAGTTGACG 58.994 50.000 0.00 0.0 0.00 4.35 F
2598 2696 1.133976 AGGGCCATCATACACTCTTGC 60.134 52.381 6.18 0.0 0.00 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2052 2150 1.098050 GATCAAATGCCAAGCGGAGT 58.902 50.0 0.00 0.00 0.0 3.85 R
2842 2940 0.250727 ACGGTTCCATCCAACACCAG 60.251 55.0 0.00 0.00 0.0 4.00 R
4384 4765 0.035915 GAGGAGTTCAGAACAGGCCC 60.036 60.0 15.85 10.23 0.0 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 0.527385 GAAGTGGCTCTCGCTAGCAG 60.527 60.000 16.45 11.32 44.64 4.24
109 111 1.123077 CGGGGTGGAGATCATGAAGA 58.877 55.000 0.00 0.00 0.00 2.87
124 126 2.054021 TGAAGATGGACCTCAACACCA 58.946 47.619 0.00 0.00 38.09 4.17
134 136 1.339055 CCTCAACACCATGTCACCGAT 60.339 52.381 0.00 0.00 0.00 4.18
144 146 1.191489 TGTCACCGATGAAGAGGCCA 61.191 55.000 5.01 0.00 36.31 5.36
145 147 0.460987 GTCACCGATGAAGAGGCCAG 60.461 60.000 5.01 0.00 36.31 4.85
164 166 1.988107 AGGGTTCAAGAAGATGCAGGA 59.012 47.619 0.00 0.00 0.00 3.86
178 180 2.084844 CAGGACGACATGCTCAAGC 58.915 57.895 0.00 0.00 42.50 4.01
256 258 2.046892 GCTGGCATGACCACGACT 60.047 61.111 0.00 0.00 46.36 4.18
276 284 4.074970 ACTGAGATGGTGTGGTTGAATTC 58.925 43.478 0.00 0.00 0.00 2.17
359 374 1.111277 GTGGTGTTTTTGGAGCTGGT 58.889 50.000 0.00 0.00 0.00 4.00
369 384 6.266558 TGTTTTTGGAGCTGGTATTGTATGTT 59.733 34.615 0.00 0.00 0.00 2.71
374 389 4.513442 GAGCTGGTATTGTATGTTGACCA 58.487 43.478 0.00 0.00 37.85 4.02
376 391 6.247229 AGCTGGTATTGTATGTTGACCATA 57.753 37.500 0.00 0.00 39.40 2.74
377 393 6.658849 AGCTGGTATTGTATGTTGACCATAA 58.341 36.000 0.00 0.00 39.40 1.90
381 397 6.317642 TGGTATTGTATGTTGACCATAAGCAC 59.682 38.462 0.00 0.00 37.77 4.40
387 404 1.196808 GTTGACCATAAGCACGGTGTG 59.803 52.381 10.24 0.00 34.99 3.82
388 405 0.682292 TGACCATAAGCACGGTGTGA 59.318 50.000 10.24 0.00 34.99 3.58
413 431 2.745884 CTTTGGGCGACGGCATGA 60.746 61.111 23.66 5.13 42.47 3.07
420 438 2.261361 CGACGGCATGACCACTGA 59.739 61.111 0.00 0.00 39.03 3.41
433 452 2.688446 GACCACTGACATGATCTACGGA 59.312 50.000 0.00 0.00 0.00 4.69
437 456 0.384309 TGACATGATCTACGGACGCC 59.616 55.000 0.00 0.00 0.00 5.68
438 457 0.384309 GACATGATCTACGGACGCCA 59.616 55.000 0.00 0.00 0.00 5.69
510 534 2.951642 CACTGCCGACCCAAATCATAAT 59.048 45.455 0.00 0.00 0.00 1.28
511 535 4.133820 CACTGCCGACCCAAATCATAATA 58.866 43.478 0.00 0.00 0.00 0.98
512 536 4.578516 CACTGCCGACCCAAATCATAATAA 59.421 41.667 0.00 0.00 0.00 1.40
516 540 5.596361 TGCCGACCCAAATCATAATAAACAT 59.404 36.000 0.00 0.00 0.00 2.71
604 630 3.016474 GCGCGTTGGAGTTGCTCTC 62.016 63.158 8.43 1.79 42.07 3.20
605 631 2.720758 CGCGTTGGAGTTGCTCTCG 61.721 63.158 0.00 0.00 43.60 4.04
606 632 1.372997 GCGTTGGAGTTGCTCTCGA 60.373 57.895 10.67 0.00 43.60 4.04
607 633 1.347817 GCGTTGGAGTTGCTCTCGAG 61.348 60.000 5.93 5.93 43.60 4.04
608 634 0.241213 CGTTGGAGTTGCTCTCGAGA 59.759 55.000 15.70 15.70 43.60 4.04
609 635 1.335964 CGTTGGAGTTGCTCTCGAGAA 60.336 52.381 17.36 0.00 43.60 2.87
610 636 2.755650 GTTGGAGTTGCTCTCGAGAAA 58.244 47.619 17.36 5.99 43.60 2.52
611 637 3.330267 GTTGGAGTTGCTCTCGAGAAAT 58.670 45.455 17.36 0.17 43.60 2.17
612 638 4.495422 GTTGGAGTTGCTCTCGAGAAATA 58.505 43.478 17.36 2.67 43.60 1.40
613 639 4.377839 TGGAGTTGCTCTCGAGAAATAG 57.622 45.455 17.36 5.79 43.60 1.73
614 640 3.120041 GGAGTTGCTCTCGAGAAATAGC 58.880 50.000 17.36 16.25 43.60 2.97
615 641 3.120041 GAGTTGCTCTCGAGAAATAGCC 58.880 50.000 17.36 4.76 33.99 3.93
616 642 2.497675 AGTTGCTCTCGAGAAATAGCCA 59.502 45.455 17.36 5.34 33.99 4.75
617 643 3.055819 AGTTGCTCTCGAGAAATAGCCAA 60.056 43.478 17.36 10.04 33.99 4.52
618 644 3.170791 TGCTCTCGAGAAATAGCCAAG 57.829 47.619 17.36 2.32 33.99 3.61
619 645 1.864082 GCTCTCGAGAAATAGCCAAGC 59.136 52.381 17.36 9.09 0.00 4.01
620 646 2.482839 GCTCTCGAGAAATAGCCAAGCT 60.483 50.000 17.36 0.00 43.41 3.74
621 647 3.122297 CTCTCGAGAAATAGCCAAGCTG 58.878 50.000 17.36 0.00 40.10 4.24
622 648 2.497675 TCTCGAGAAATAGCCAAGCTGT 59.502 45.455 14.01 0.00 40.10 4.40
623 649 3.055819 TCTCGAGAAATAGCCAAGCTGTT 60.056 43.478 14.01 0.00 41.50 3.16
625 651 4.072131 TCGAGAAATAGCCAAGCTGTTTT 58.928 39.130 11.79 6.04 46.72 2.43
626 652 4.518970 TCGAGAAATAGCCAAGCTGTTTTT 59.481 37.500 11.79 7.08 46.72 1.94
627 653 4.853743 CGAGAAATAGCCAAGCTGTTTTTC 59.146 41.667 15.04 15.04 46.72 2.29
628 654 5.335191 CGAGAAATAGCCAAGCTGTTTTTCT 60.335 40.000 19.60 18.20 46.72 2.52
629 655 6.410942 AGAAATAGCCAAGCTGTTTTTCTT 57.589 33.333 11.79 0.00 46.72 2.52
630 656 6.820335 AGAAATAGCCAAGCTGTTTTTCTTT 58.180 32.000 11.79 0.00 46.72 2.52
631 657 7.951591 AGAAATAGCCAAGCTGTTTTTCTTTA 58.048 30.769 11.79 0.00 46.72 1.85
632 658 7.867909 AGAAATAGCCAAGCTGTTTTTCTTTAC 59.132 33.333 11.79 0.00 46.72 2.01
633 659 6.648879 ATAGCCAAGCTGTTTTTCTTTACA 57.351 33.333 0.00 0.00 40.10 2.41
634 660 5.535753 AGCCAAGCTGTTTTTCTTTACAT 57.464 34.783 0.00 0.00 37.57 2.29
635 661 5.532557 AGCCAAGCTGTTTTTCTTTACATC 58.467 37.500 0.00 0.00 37.57 3.06
636 662 5.068987 AGCCAAGCTGTTTTTCTTTACATCA 59.931 36.000 0.00 0.00 37.57 3.07
637 663 5.175673 GCCAAGCTGTTTTTCTTTACATCAC 59.824 40.000 0.00 0.00 0.00 3.06
638 664 6.507023 CCAAGCTGTTTTTCTTTACATCACT 58.493 36.000 0.00 0.00 0.00 3.41
639 665 6.638468 CCAAGCTGTTTTTCTTTACATCACTC 59.362 38.462 0.00 0.00 0.00 3.51
640 666 6.942532 AGCTGTTTTTCTTTACATCACTCA 57.057 33.333 0.00 0.00 0.00 3.41
641 667 7.516198 AGCTGTTTTTCTTTACATCACTCAT 57.484 32.000 0.00 0.00 0.00 2.90
642 668 7.365741 AGCTGTTTTTCTTTACATCACTCATG 58.634 34.615 0.00 0.00 38.64 3.07
644 670 8.289618 GCTGTTTTTCTTTACATCACTCATGTA 58.710 33.333 0.00 0.00 44.56 2.29
645 671 9.599322 CTGTTTTTCTTTACATCACTCATGTAC 57.401 33.333 0.00 0.00 45.97 2.90
646 672 9.337396 TGTTTTTCTTTACATCACTCATGTACT 57.663 29.630 0.00 0.00 45.97 2.73
649 675 7.905604 TTCTTTACATCACTCATGTACTTGG 57.094 36.000 8.74 3.03 45.97 3.61
650 676 7.239763 TCTTTACATCACTCATGTACTTGGA 57.760 36.000 8.74 0.00 45.97 3.53
651 677 7.323420 TCTTTACATCACTCATGTACTTGGAG 58.677 38.462 8.74 7.91 45.97 3.86
652 678 6.605471 TTACATCACTCATGTACTTGGAGT 57.395 37.500 8.74 8.49 45.97 3.85
658 684 5.946942 ACTCATGTACTTGGAGTGATGAT 57.053 39.130 11.94 0.00 40.21 2.45
659 685 5.911752 ACTCATGTACTTGGAGTGATGATC 58.088 41.667 11.94 0.00 40.21 2.92
660 686 5.163364 ACTCATGTACTTGGAGTGATGATCC 60.163 44.000 11.94 0.00 40.21 3.36
661 687 4.101585 TCATGTACTTGGAGTGATGATCCC 59.898 45.833 8.74 0.00 35.86 3.85
662 688 2.771943 TGTACTTGGAGTGATGATCCCC 59.228 50.000 0.00 0.00 35.86 4.81
663 689 2.277008 ACTTGGAGTGATGATCCCCT 57.723 50.000 0.00 0.00 35.86 4.79
664 690 3.421394 ACTTGGAGTGATGATCCCCTA 57.579 47.619 0.00 0.00 35.86 3.53
665 691 3.312890 ACTTGGAGTGATGATCCCCTAG 58.687 50.000 0.00 0.00 35.86 3.02
666 692 1.722034 TGGAGTGATGATCCCCTAGC 58.278 55.000 0.00 0.00 35.86 3.42
667 693 0.980423 GGAGTGATGATCCCCTAGCC 59.020 60.000 0.00 0.00 0.00 3.93
668 694 1.484065 GGAGTGATGATCCCCTAGCCT 60.484 57.143 0.00 0.00 0.00 4.58
669 695 1.899142 GAGTGATGATCCCCTAGCCTC 59.101 57.143 0.00 0.00 0.00 4.70
670 696 1.221523 AGTGATGATCCCCTAGCCTCA 59.778 52.381 0.00 0.00 0.00 3.86
671 697 2.158035 AGTGATGATCCCCTAGCCTCAT 60.158 50.000 0.00 0.00 0.00 2.90
672 698 2.641815 GTGATGATCCCCTAGCCTCATT 59.358 50.000 0.00 0.00 0.00 2.57
673 699 2.641321 TGATGATCCCCTAGCCTCATTG 59.359 50.000 0.00 0.00 0.00 2.82
674 700 2.196742 TGATCCCCTAGCCTCATTGT 57.803 50.000 0.00 0.00 0.00 2.71
675 701 1.770658 TGATCCCCTAGCCTCATTGTG 59.229 52.381 0.00 0.00 0.00 3.33
676 702 1.072965 GATCCCCTAGCCTCATTGTGG 59.927 57.143 0.22 0.22 0.00 4.17
677 703 0.044092 TCCCCTAGCCTCATTGTGGA 59.956 55.000 8.93 0.00 0.00 4.02
678 704 0.471617 CCCCTAGCCTCATTGTGGAG 59.528 60.000 8.93 0.00 34.62 3.86
679 705 1.207791 CCCTAGCCTCATTGTGGAGT 58.792 55.000 8.93 0.00 32.91 3.85
680 706 1.561542 CCCTAGCCTCATTGTGGAGTT 59.438 52.381 8.93 0.00 32.91 3.01
681 707 2.025887 CCCTAGCCTCATTGTGGAGTTT 60.026 50.000 8.93 0.00 32.91 2.66
682 708 3.562176 CCCTAGCCTCATTGTGGAGTTTT 60.562 47.826 8.93 0.00 32.91 2.43
683 709 4.082125 CCTAGCCTCATTGTGGAGTTTTT 58.918 43.478 8.93 0.00 32.91 1.94
684 710 4.082571 CCTAGCCTCATTGTGGAGTTTTTG 60.083 45.833 8.93 0.00 32.91 2.44
685 711 3.565307 AGCCTCATTGTGGAGTTTTTGA 58.435 40.909 8.93 0.00 32.91 2.69
686 712 4.154942 AGCCTCATTGTGGAGTTTTTGAT 58.845 39.130 8.93 0.00 32.91 2.57
687 713 4.219288 AGCCTCATTGTGGAGTTTTTGATC 59.781 41.667 8.93 0.00 32.91 2.92
688 714 4.022068 GCCTCATTGTGGAGTTTTTGATCA 60.022 41.667 8.93 0.00 32.91 2.92
689 715 5.509501 GCCTCATTGTGGAGTTTTTGATCAA 60.510 40.000 3.38 3.38 32.91 2.57
690 716 5.922544 CCTCATTGTGGAGTTTTTGATCAAC 59.077 40.000 7.89 0.00 32.91 3.18
691 717 5.518812 TCATTGTGGAGTTTTTGATCAACG 58.481 37.500 7.89 0.00 0.00 4.10
692 718 5.298026 TCATTGTGGAGTTTTTGATCAACGA 59.702 36.000 7.89 0.00 0.00 3.85
693 719 5.766150 TTGTGGAGTTTTTGATCAACGAT 57.234 34.783 7.89 0.00 0.00 3.73
694 720 5.766150 TGTGGAGTTTTTGATCAACGATT 57.234 34.783 7.89 0.00 0.00 3.34
695 721 6.869315 TGTGGAGTTTTTGATCAACGATTA 57.131 33.333 7.89 0.00 0.00 1.75
696 722 7.447374 TGTGGAGTTTTTGATCAACGATTAT 57.553 32.000 7.89 0.00 0.00 1.28
697 723 7.526608 TGTGGAGTTTTTGATCAACGATTATC 58.473 34.615 7.89 2.20 0.00 1.75
698 724 6.967199 GTGGAGTTTTTGATCAACGATTATCC 59.033 38.462 7.89 11.29 0.00 2.59
699 725 6.657117 TGGAGTTTTTGATCAACGATTATCCA 59.343 34.615 7.89 13.57 0.00 3.41
700 726 6.967199 GGAGTTTTTGATCAACGATTATCCAC 59.033 38.462 7.89 0.00 0.00 4.02
701 727 7.148239 GGAGTTTTTGATCAACGATTATCCACT 60.148 37.037 7.89 0.00 0.00 4.00
702 728 7.752695 AGTTTTTGATCAACGATTATCCACTC 58.247 34.615 7.89 0.00 0.00 3.51
703 729 7.607991 AGTTTTTGATCAACGATTATCCACTCT 59.392 33.333 7.89 0.00 0.00 3.24
704 730 7.539712 TTTTGATCAACGATTATCCACTCTC 57.460 36.000 7.89 0.00 0.00 3.20
705 731 5.852282 TGATCAACGATTATCCACTCTCA 57.148 39.130 0.00 0.00 0.00 3.27
706 732 6.410942 TGATCAACGATTATCCACTCTCAT 57.589 37.500 0.00 0.00 0.00 2.90
707 733 6.450545 TGATCAACGATTATCCACTCTCATC 58.549 40.000 0.00 0.00 0.00 2.92
708 734 5.852282 TCAACGATTATCCACTCTCATCA 57.148 39.130 0.00 0.00 0.00 3.07
709 735 6.220726 TCAACGATTATCCACTCTCATCAA 57.779 37.500 0.00 0.00 0.00 2.57
710 736 6.042777 TCAACGATTATCCACTCTCATCAAC 58.957 40.000 0.00 0.00 0.00 3.18
711 737 5.598416 ACGATTATCCACTCTCATCAACA 57.402 39.130 0.00 0.00 0.00 3.33
712 738 5.977635 ACGATTATCCACTCTCATCAACAA 58.022 37.500 0.00 0.00 0.00 2.83
713 739 6.406370 ACGATTATCCACTCTCATCAACAAA 58.594 36.000 0.00 0.00 0.00 2.83
714 740 6.536582 ACGATTATCCACTCTCATCAACAAAG 59.463 38.462 0.00 0.00 0.00 2.77
715 741 6.510799 CGATTATCCACTCTCATCAACAAAGC 60.511 42.308 0.00 0.00 0.00 3.51
716 742 2.416747 TCCACTCTCATCAACAAAGCG 58.583 47.619 0.00 0.00 0.00 4.68
717 743 1.135859 CCACTCTCATCAACAAAGCGC 60.136 52.381 0.00 0.00 0.00 5.92
718 744 0.792640 ACTCTCATCAACAAAGCGCG 59.207 50.000 0.00 0.00 0.00 6.86
719 745 0.792640 CTCTCATCAACAAAGCGCGT 59.207 50.000 8.43 0.00 0.00 6.01
720 746 1.195448 CTCTCATCAACAAAGCGCGTT 59.805 47.619 8.43 1.67 0.00 4.84
721 747 1.069973 TCTCATCAACAAAGCGCGTTG 60.070 47.619 30.24 30.24 44.11 4.10
725 751 1.830338 CAACAAAGCGCGTTGAACG 59.170 52.632 36.63 21.75 45.30 3.95
726 752 0.859788 CAACAAAGCGCGTTGAACGT 60.860 50.000 36.63 16.01 45.30 3.99
727 753 0.587985 AACAAAGCGCGTTGAACGTC 60.588 50.000 36.63 11.29 44.73 4.34
728 754 1.275657 CAAAGCGCGTTGAACGTCT 59.724 52.632 28.69 13.34 44.73 4.18
729 755 0.315869 CAAAGCGCGTTGAACGTCTT 60.316 50.000 28.69 18.00 44.73 3.01
730 756 0.375803 AAAGCGCGTTGAACGTCTTT 59.624 45.000 23.49 23.49 44.73 2.52
731 757 0.375803 AAGCGCGTTGAACGTCTTTT 59.624 45.000 19.53 6.36 44.73 2.27
732 758 0.375803 AGCGCGTTGAACGTCTTTTT 59.624 45.000 19.53 0.00 44.73 1.94
733 759 0.762504 GCGCGTTGAACGTCTTTTTC 59.237 50.000 19.53 0.00 44.73 2.29
734 760 1.852861 GCGCGTTGAACGTCTTTTTCA 60.853 47.619 19.53 0.00 44.73 2.69
735 761 2.432856 CGCGTTGAACGTCTTTTTCAA 58.567 42.857 19.53 0.00 44.73 2.69
741 767 5.755330 TTGAACGTCTTTTTCAACAAAGC 57.245 34.783 0.00 0.00 37.91 3.51
742 768 5.054390 TGAACGTCTTTTTCAACAAAGCT 57.946 34.783 0.00 0.00 34.26 3.74
743 769 6.184580 TGAACGTCTTTTTCAACAAAGCTA 57.815 33.333 0.00 0.00 34.26 3.32
744 770 6.025280 TGAACGTCTTTTTCAACAAAGCTAC 58.975 36.000 0.00 0.00 34.26 3.58
745 771 4.916870 ACGTCTTTTTCAACAAAGCTACC 58.083 39.130 0.00 0.00 34.26 3.18
746 772 4.638865 ACGTCTTTTTCAACAAAGCTACCT 59.361 37.500 0.00 0.00 34.26 3.08
747 773 5.818857 ACGTCTTTTTCAACAAAGCTACCTA 59.181 36.000 0.00 0.00 34.26 3.08
748 774 6.134061 CGTCTTTTTCAACAAAGCTACCTAC 58.866 40.000 0.00 0.00 34.26 3.18
749 775 6.238266 CGTCTTTTTCAACAAAGCTACCTACA 60.238 38.462 0.00 0.00 34.26 2.74
750 776 7.477494 GTCTTTTTCAACAAAGCTACCTACAA 58.523 34.615 0.00 0.00 34.26 2.41
751 777 7.971722 GTCTTTTTCAACAAAGCTACCTACAAA 59.028 33.333 0.00 0.00 34.26 2.83
752 778 8.524487 TCTTTTTCAACAAAGCTACCTACAAAA 58.476 29.630 0.00 0.00 34.26 2.44
753 779 9.145865 CTTTTTCAACAAAGCTACCTACAAAAA 57.854 29.630 0.00 0.00 0.00 1.94
754 780 9.660180 TTTTTCAACAAAGCTACCTACAAAAAT 57.340 25.926 0.00 0.00 0.00 1.82
755 781 9.660180 TTTTCAACAAAGCTACCTACAAAAATT 57.340 25.926 0.00 0.00 0.00 1.82
756 782 9.660180 TTTCAACAAAGCTACCTACAAAAATTT 57.340 25.926 0.00 0.00 0.00 1.82
757 783 8.641499 TCAACAAAGCTACCTACAAAAATTTG 57.359 30.769 4.40 4.40 43.62 2.32
758 784 7.223777 TCAACAAAGCTACCTACAAAAATTTGC 59.776 33.333 5.82 0.00 41.79 3.68
759 785 6.578023 ACAAAGCTACCTACAAAAATTTGCA 58.422 32.000 5.82 0.00 41.79 4.08
760 786 7.044798 ACAAAGCTACCTACAAAAATTTGCAA 58.955 30.769 5.82 0.00 41.79 4.08
761 787 7.714813 ACAAAGCTACCTACAAAAATTTGCAAT 59.285 29.630 0.00 0.00 41.79 3.56
762 788 9.202273 CAAAGCTACCTACAAAAATTTGCAATA 57.798 29.630 0.00 0.00 41.79 1.90
763 789 9.771534 AAAGCTACCTACAAAAATTTGCAATAA 57.228 25.926 0.00 0.00 41.79 1.40
764 790 9.771534 AAGCTACCTACAAAAATTTGCAATAAA 57.228 25.926 0.00 0.00 41.79 1.40
765 791 9.771534 AGCTACCTACAAAAATTTGCAATAAAA 57.228 25.926 0.00 0.00 41.79 1.52
795 821 0.042535 CGCGCTGAACGTCTTTTTCA 60.043 50.000 5.56 0.00 46.11 2.69
822 853 2.172851 AAAGAAATACGGCGTGGTCA 57.827 45.000 24.86 1.82 0.00 4.02
823 854 1.435577 AAGAAATACGGCGTGGTCAC 58.564 50.000 24.86 10.12 0.00 3.67
829 860 2.125832 CGGCGTGGTCACCGTTAT 60.126 61.111 0.00 0.00 44.46 1.89
830 861 2.162754 CGGCGTGGTCACCGTTATC 61.163 63.158 0.00 0.00 44.46 1.75
831 862 1.079681 GGCGTGGTCACCGTTATCA 60.080 57.895 0.00 0.00 0.00 2.15
832 863 1.082117 GGCGTGGTCACCGTTATCAG 61.082 60.000 0.00 0.00 0.00 2.90
834 865 1.082117 CGTGGTCACCGTTATCAGGC 61.082 60.000 0.00 0.00 0.00 4.85
964 995 4.508128 CCCATGTCCGTCCGTCCG 62.508 72.222 0.00 0.00 0.00 4.79
966 997 4.129737 CATGTCCGTCCGTCCGCT 62.130 66.667 0.00 0.00 0.00 5.52
1270 1305 4.093952 CCGCGGCTTGCTGACTTG 62.094 66.667 14.67 0.00 43.27 3.16
1549 1584 2.013483 TGATTTGTTTTGCCGCGCG 61.013 52.632 25.67 25.67 0.00 6.86
1635 1670 1.006086 TGTGCAGTGTGAAGTTGACG 58.994 50.000 0.00 0.00 0.00 4.35
1641 1676 2.285220 CAGTGTGAAGTTGACGTTCAGG 59.715 50.000 0.00 0.00 34.59 3.86
1646 1681 5.235616 GTGTGAAGTTGACGTTCAGGAATAA 59.764 40.000 0.00 0.00 34.59 1.40
1647 1682 5.465390 TGTGAAGTTGACGTTCAGGAATAAG 59.535 40.000 0.00 0.00 34.59 1.73
1648 1683 5.465724 GTGAAGTTGACGTTCAGGAATAAGT 59.534 40.000 0.00 0.00 34.59 2.24
1670 1705 5.877564 AGTAGTATCTCTTCTTTTGCTTGGC 59.122 40.000 0.00 0.00 0.00 4.52
1787 1822 1.196766 AGGTAGGTCCGGGTTGGTTC 61.197 60.000 0.00 0.00 41.99 3.62
1839 1874 3.819368 TCTCCTTTGATTGAACAGCACA 58.181 40.909 0.00 0.00 0.00 4.57
1869 1905 4.321527 GCCCATTCTGGAGCATTTAATAGC 60.322 45.833 0.00 0.00 40.96 2.97
1878 1914 7.715249 TCTGGAGCATTTAATAGCGAATTAGTT 59.285 33.333 0.00 0.00 31.68 2.24
1926 1997 9.212641 GCATGATCTGACTAATATACAACACAT 57.787 33.333 0.00 0.00 0.00 3.21
2185 2283 3.762407 TGTTACTTGCACTTCTGGCTA 57.238 42.857 0.00 0.00 0.00 3.93
2415 2513 2.092753 TGGTCTTCAGCAGATCAATCCC 60.093 50.000 0.00 0.00 39.94 3.85
2511 2609 5.131642 TGATCTGGGAATTCTGCTAATGTCT 59.868 40.000 5.23 0.00 0.00 3.41
2583 2681 2.045634 GACACCGGGTTTAGGGCC 60.046 66.667 6.32 0.00 0.00 5.80
2598 2696 1.133976 AGGGCCATCATACACTCTTGC 60.134 52.381 6.18 0.00 0.00 4.01
2791 2889 6.748333 TGGATCTTAAAGATTGCAAGAGTG 57.252 37.500 4.94 0.00 34.53 3.51
2842 2940 4.344865 TCCCCAGCCTGCGGAAAC 62.345 66.667 0.00 0.00 0.00 2.78
2970 3068 1.336125 GATTGCATACCCTTGCTGCTC 59.664 52.381 0.00 0.00 43.18 4.26
3027 3125 5.104569 GGATCTCTCAAGAATCCCAAGTCTT 60.105 44.000 0.00 0.00 40.30 3.01
3030 3128 5.780282 TCTCTCAAGAATCCCAAGTCTTACA 59.220 40.000 0.00 0.00 37.71 2.41
3074 3172 1.400737 CGGACCCGAACTCCTCTTAT 58.599 55.000 1.54 0.00 42.83 1.73
3159 3257 2.878526 GCAATTCGAGGGGGTAACTTGT 60.879 50.000 0.00 0.00 0.00 3.16
3357 3455 3.003763 GGCGAGGAACTGGGGACT 61.004 66.667 0.00 0.00 41.55 3.85
3495 3593 1.823169 AATGCAGCAACTTGGCCCTG 61.823 55.000 0.00 0.00 0.00 4.45
3501 3599 1.829533 CAACTTGGCCCTGTGCTGT 60.830 57.895 0.00 0.00 40.92 4.40
3545 3643 4.442052 CCCAGAATGATCGAAACAGCTCTA 60.442 45.833 0.00 0.00 39.69 2.43
3551 3649 4.115516 TGATCGAAACAGCTCTAATCAGC 58.884 43.478 0.00 0.00 39.99 4.26
3553 3651 2.497675 TCGAAACAGCTCTAATCAGCCT 59.502 45.455 0.00 0.00 40.65 4.58
3590 3688 7.870954 TCTTGTTGTATTACCGGATAAGCTATG 59.129 37.037 9.46 0.00 0.00 2.23
3620 3718 3.691118 GCTGTTATCTTTCCTCATGTGCA 59.309 43.478 0.00 0.00 0.00 4.57
3662 3760 5.336744 CAACCTGTTTGTTGTTACATCGTT 58.663 37.500 0.00 0.00 40.54 3.85
3673 3774 8.766000 TGTTGTTACATCGTTCTATGTATGTT 57.234 30.769 0.00 0.00 40.93 2.71
3681 3782 8.201464 ACATCGTTCTATGTATGTTGTATCCAA 58.799 33.333 0.00 0.00 38.31 3.53
3727 3828 9.334693 GAAATATTTGTTCTCTCACATGTTGAC 57.665 33.333 5.17 0.00 0.00 3.18
3729 3830 3.452755 TGTTCTCTCACATGTTGACGT 57.547 42.857 0.00 0.00 0.00 4.34
3731 3832 4.939271 TGTTCTCTCACATGTTGACGTTA 58.061 39.130 0.00 0.00 0.00 3.18
3735 3836 7.654116 TGTTCTCTCACATGTTGACGTTATTTA 59.346 33.333 0.00 0.00 0.00 1.40
3737 3838 8.771920 TCTCTCACATGTTGACGTTATTTATT 57.228 30.769 0.00 0.00 0.00 1.40
3739 3840 8.771920 TCTCACATGTTGACGTTATTTATTCT 57.228 30.769 0.00 0.00 0.00 2.40
3740 3841 8.655970 TCTCACATGTTGACGTTATTTATTCTG 58.344 33.333 0.00 0.00 0.00 3.02
3741 3842 7.747888 TCACATGTTGACGTTATTTATTCTGG 58.252 34.615 0.00 0.00 0.00 3.86
3742 3843 7.604545 TCACATGTTGACGTTATTTATTCTGGA 59.395 33.333 0.00 0.00 0.00 3.86
3743 3844 7.692291 CACATGTTGACGTTATTTATTCTGGAC 59.308 37.037 0.00 0.00 0.00 4.02
3744 3845 6.397831 TGTTGACGTTATTTATTCTGGACG 57.602 37.500 0.00 0.00 36.65 4.79
3766 4026 4.259850 CGTTATTTCTCTACGCAAGCCTTC 60.260 45.833 0.00 0.00 45.62 3.46
3780 4040 0.178068 GCCTTCTGTCCTGCCGATTA 59.822 55.000 0.00 0.00 0.00 1.75
3814 4083 2.566529 GGCCTTGCCTGCGTAAAC 59.433 61.111 0.00 0.00 46.69 2.01
3873 4150 8.978564 ATATATGTTCTGTAAGCTGATCTTCG 57.021 34.615 0.00 0.00 36.25 3.79
3915 4193 8.798859 ATGAACACCTCATTATGGATATAAGC 57.201 34.615 0.00 0.00 42.46 3.09
3921 4199 8.393366 CACCTCATTATGGATATAAGCGAAATG 58.607 37.037 0.00 0.00 32.58 2.32
3950 4229 6.708054 ACATCATCCTAAGCTAATTGCAGTAC 59.292 38.462 0.00 0.00 45.94 2.73
3970 4347 8.077991 GCAGTACTGTATAATGTACATTCGGTA 58.922 37.037 24.00 19.96 40.84 4.02
3985 4363 0.300491 CGGTACACATCATTTCGGCG 59.700 55.000 0.00 0.00 0.00 6.46
4029 4410 3.131577 TCACGTAACCTGTGTTCTGAGTT 59.868 43.478 0.00 0.00 38.48 3.01
4031 4412 2.800544 CGTAACCTGTGTTCTGAGTTGG 59.199 50.000 0.00 0.00 35.87 3.77
4032 4413 1.680338 AACCTGTGTTCTGAGTTGGC 58.320 50.000 0.00 0.00 0.00 4.52
4054 4435 1.741525 GCAAAAGGCAGTTCAGGCA 59.258 52.632 0.00 0.00 43.97 4.75
4074 4455 5.772825 GCATCCAACTTGCCTAATAATCA 57.227 39.130 0.00 0.00 33.95 2.57
4075 4456 6.336842 GCATCCAACTTGCCTAATAATCAT 57.663 37.500 0.00 0.00 33.95 2.45
4077 4458 6.571150 GCATCCAACTTGCCTAATAATCATCC 60.571 42.308 0.00 0.00 33.95 3.51
4079 4460 5.827797 TCCAACTTGCCTAATAATCATCCAC 59.172 40.000 0.00 0.00 0.00 4.02
4080 4461 5.277974 CCAACTTGCCTAATAATCATCCACG 60.278 44.000 0.00 0.00 0.00 4.94
4169 4550 5.527951 ACGTGTGATGTTTATGCATTGTTT 58.472 33.333 3.54 0.00 0.00 2.83
4230 4611 3.452755 TGCATCCGGTGTTAGTATGAG 57.547 47.619 0.00 0.00 0.00 2.90
4235 4616 4.054780 TCCGGTGTTAGTATGAGATTGC 57.945 45.455 0.00 0.00 0.00 3.56
4269 4650 5.906113 TGGCAATAAAAACATCATACGGT 57.094 34.783 0.00 0.00 0.00 4.83
4270 4651 6.274157 TGGCAATAAAAACATCATACGGTT 57.726 33.333 0.00 0.00 0.00 4.44
4271 4652 6.692486 TGGCAATAAAAACATCATACGGTTT 58.308 32.000 0.00 0.00 38.78 3.27
4272 4653 7.827701 TGGCAATAAAAACATCATACGGTTTA 58.172 30.769 0.00 0.00 36.28 2.01
4273 4654 8.304596 TGGCAATAAAAACATCATACGGTTTAA 58.695 29.630 0.00 0.00 36.28 1.52
4274 4655 8.803799 GGCAATAAAAACATCATACGGTTTAAG 58.196 33.333 0.00 0.00 36.28 1.85
4295 4676 9.936759 TTTAAGTTATGATATGTGAGTGTGTGA 57.063 29.630 0.00 0.00 0.00 3.58
4305 4686 5.545658 TGTGAGTGTGTGAACTTTTCTTC 57.454 39.130 0.00 0.00 0.00 2.87
4309 4690 5.705441 TGAGTGTGTGAACTTTTCTTCTTGT 59.295 36.000 0.00 0.00 0.00 3.16
4310 4691 6.206634 TGAGTGTGTGAACTTTTCTTCTTGTT 59.793 34.615 0.00 0.00 0.00 2.83
4311 4692 7.389330 TGAGTGTGTGAACTTTTCTTCTTGTTA 59.611 33.333 0.00 0.00 0.00 2.41
4362 4743 7.975866 ACAATATCAAAATGATTCGCAGTTC 57.024 32.000 0.00 0.00 38.26 3.01
4363 4744 7.765307 ACAATATCAAAATGATTCGCAGTTCT 58.235 30.769 0.00 0.00 38.26 3.01
4364 4745 8.246180 ACAATATCAAAATGATTCGCAGTTCTT 58.754 29.630 0.00 0.00 38.26 2.52
4365 4746 9.079833 CAATATCAAAATGATTCGCAGTTCTTT 57.920 29.630 0.00 0.00 38.26 2.52
4366 4747 9.643693 AATATCAAAATGATTCGCAGTTCTTTT 57.356 25.926 0.00 0.00 38.26 2.27
4375 4756 8.547967 TGATTCGCAGTTCTTTTTAGAAGTAT 57.452 30.769 0.00 0.00 30.96 2.12
4387 4768 9.174166 TCTTTTTAGAAGTATCACATTTAGGGC 57.826 33.333 0.00 0.00 0.00 5.19
4388 4769 7.875327 TTTTAGAAGTATCACATTTAGGGCC 57.125 36.000 0.00 0.00 0.00 5.80
4389 4770 6.824958 TTAGAAGTATCACATTTAGGGCCT 57.175 37.500 12.58 12.58 0.00 5.19
4390 4771 5.041191 AGAAGTATCACATTTAGGGCCTG 57.959 43.478 18.53 1.87 0.00 4.85
4391 4772 4.475016 AGAAGTATCACATTTAGGGCCTGT 59.525 41.667 18.53 2.67 0.00 4.00
4392 4773 4.862641 AGTATCACATTTAGGGCCTGTT 57.137 40.909 18.53 0.00 0.00 3.16
4393 4774 4.781934 AGTATCACATTTAGGGCCTGTTC 58.218 43.478 18.53 0.00 0.00 3.18
4394 4775 4.475016 AGTATCACATTTAGGGCCTGTTCT 59.525 41.667 18.53 0.00 0.00 3.01
4395 4776 3.071874 TCACATTTAGGGCCTGTTCTG 57.928 47.619 18.53 10.76 0.00 3.02
4396 4777 2.642311 TCACATTTAGGGCCTGTTCTGA 59.358 45.455 18.53 7.46 0.00 3.27
4397 4778 3.073798 TCACATTTAGGGCCTGTTCTGAA 59.926 43.478 18.53 0.00 0.00 3.02
4398 4779 3.191371 CACATTTAGGGCCTGTTCTGAAC 59.809 47.826 18.53 13.49 0.00 3.18
4399 4780 3.074538 ACATTTAGGGCCTGTTCTGAACT 59.925 43.478 18.53 2.88 0.00 3.01
4400 4781 3.418684 TTTAGGGCCTGTTCTGAACTC 57.581 47.619 18.53 9.94 0.00 3.01
4401 4782 1.276622 TAGGGCCTGTTCTGAACTCC 58.723 55.000 18.53 16.82 0.00 3.85
4402 4783 0.474660 AGGGCCTGTTCTGAACTCCT 60.475 55.000 20.18 16.91 0.00 3.69
4403 4784 0.035915 GGGCCTGTTCTGAACTCCTC 60.036 60.000 20.18 6.04 0.00 3.71
4404 4785 0.035915 GGCCTGTTCTGAACTCCTCC 60.036 60.000 20.18 12.29 0.00 4.30
4405 4786 0.687354 GCCTGTTCTGAACTCCTCCA 59.313 55.000 20.18 0.00 0.00 3.86
4406 4787 1.072331 GCCTGTTCTGAACTCCTCCAA 59.928 52.381 20.18 0.00 0.00 3.53
4407 4788 2.772287 CCTGTTCTGAACTCCTCCAAC 58.228 52.381 20.18 0.00 0.00 3.77
4408 4789 2.370189 CCTGTTCTGAACTCCTCCAACT 59.630 50.000 20.18 0.00 0.00 3.16
4409 4790 3.556004 CCTGTTCTGAACTCCTCCAACTC 60.556 52.174 20.18 0.00 0.00 3.01
4410 4791 3.309296 TGTTCTGAACTCCTCCAACTCT 58.691 45.455 20.18 0.00 0.00 3.24
4411 4792 3.322254 TGTTCTGAACTCCTCCAACTCTC 59.678 47.826 20.18 0.00 0.00 3.20
4412 4793 3.244887 TCTGAACTCCTCCAACTCTCA 57.755 47.619 0.00 0.00 0.00 3.27
4413 4794 3.576861 TCTGAACTCCTCCAACTCTCAA 58.423 45.455 0.00 0.00 0.00 3.02
4414 4795 3.322254 TCTGAACTCCTCCAACTCTCAAC 59.678 47.826 0.00 0.00 0.00 3.18
4415 4796 3.309296 TGAACTCCTCCAACTCTCAACT 58.691 45.455 0.00 0.00 0.00 3.16
4416 4797 3.322254 TGAACTCCTCCAACTCTCAACTC 59.678 47.826 0.00 0.00 0.00 3.01
4417 4798 2.252714 ACTCCTCCAACTCTCAACTCC 58.747 52.381 0.00 0.00 0.00 3.85
4418 4799 2.251818 CTCCTCCAACTCTCAACTCCA 58.748 52.381 0.00 0.00 0.00 3.86
4419 4800 1.971357 TCCTCCAACTCTCAACTCCAC 59.029 52.381 0.00 0.00 0.00 4.02
4420 4801 1.694150 CCTCCAACTCTCAACTCCACA 59.306 52.381 0.00 0.00 0.00 4.17
4421 4802 2.104792 CCTCCAACTCTCAACTCCACAA 59.895 50.000 0.00 0.00 0.00 3.33
4422 4803 3.433598 CCTCCAACTCTCAACTCCACAAA 60.434 47.826 0.00 0.00 0.00 2.83
4423 4804 3.541632 TCCAACTCTCAACTCCACAAAC 58.458 45.455 0.00 0.00 0.00 2.93
4424 4805 3.199946 TCCAACTCTCAACTCCACAAACT 59.800 43.478 0.00 0.00 0.00 2.66
4425 4806 3.947834 CCAACTCTCAACTCCACAAACTT 59.052 43.478 0.00 0.00 0.00 2.66
4426 4807 4.035675 CCAACTCTCAACTCCACAAACTTC 59.964 45.833 0.00 0.00 0.00 3.01
4427 4808 4.762289 ACTCTCAACTCCACAAACTTCT 57.238 40.909 0.00 0.00 0.00 2.85
4428 4809 4.698575 ACTCTCAACTCCACAAACTTCTC 58.301 43.478 0.00 0.00 0.00 2.87
4429 4810 3.717707 TCTCAACTCCACAAACTTCTCG 58.282 45.455 0.00 0.00 0.00 4.04
4430 4811 3.132289 TCTCAACTCCACAAACTTCTCGT 59.868 43.478 0.00 0.00 0.00 4.18
4431 4812 3.869065 TCAACTCCACAAACTTCTCGTT 58.131 40.909 0.00 0.00 37.47 3.85
4432 4813 4.258543 TCAACTCCACAAACTTCTCGTTT 58.741 39.130 0.00 0.00 46.41 3.60
4443 4824 3.879932 CTTCTCGTTTGAAGTTGACCC 57.120 47.619 0.00 0.00 38.76 4.46
4444 4825 1.860676 TCTCGTTTGAAGTTGACCCG 58.139 50.000 0.00 0.00 0.00 5.28
4445 4826 1.409790 TCTCGTTTGAAGTTGACCCGA 59.590 47.619 0.00 0.00 0.00 5.14
4446 4827 2.159071 TCTCGTTTGAAGTTGACCCGAA 60.159 45.455 0.00 0.00 0.00 4.30
4447 4828 1.935199 TCGTTTGAAGTTGACCCGAAC 59.065 47.619 0.00 0.00 0.00 3.95
4448 4829 1.332552 CGTTTGAAGTTGACCCGAACG 60.333 52.381 0.00 0.00 40.04 3.95
4449 4830 0.658897 TTTGAAGTTGACCCGAACGC 59.341 50.000 0.00 0.00 0.00 4.84
4450 4831 0.179067 TTGAAGTTGACCCGAACGCT 60.179 50.000 0.00 0.00 0.00 5.07
4451 4832 0.179067 TGAAGTTGACCCGAACGCTT 60.179 50.000 0.00 0.00 0.00 4.68
4452 4833 0.942252 GAAGTTGACCCGAACGCTTT 59.058 50.000 0.00 0.00 0.00 3.51
4453 4834 2.137523 GAAGTTGACCCGAACGCTTTA 58.862 47.619 0.00 0.00 0.00 1.85
4454 4835 1.792006 AGTTGACCCGAACGCTTTAG 58.208 50.000 0.00 0.00 0.00 1.85
4455 4836 0.165295 GTTGACCCGAACGCTTTAGC 59.835 55.000 0.00 0.00 37.78 3.09
4456 4837 0.034337 TTGACCCGAACGCTTTAGCT 59.966 50.000 0.00 0.00 39.32 3.32
4457 4838 0.669318 TGACCCGAACGCTTTAGCTG 60.669 55.000 0.00 0.00 39.32 4.24
4458 4839 1.967597 GACCCGAACGCTTTAGCTGC 61.968 60.000 0.00 0.00 39.32 5.25
4465 4846 4.865865 GCTTTAGCTGCGGGATCT 57.134 55.556 0.00 0.00 38.21 2.75
4466 4847 2.611012 GCTTTAGCTGCGGGATCTC 58.389 57.895 0.00 0.00 38.21 2.75
4467 4848 0.882484 GCTTTAGCTGCGGGATCTCC 60.882 60.000 0.00 0.00 38.21 3.71
4476 4857 3.607661 GGGATCTCCGCGGTCCTC 61.608 72.222 26.88 19.83 36.71 3.71
4477 4858 3.967335 GGATCTCCGCGGTCCTCG 61.967 72.222 27.15 9.75 42.76 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 1.048724 TGATCTCCACCCCGTCATCC 61.049 60.000 0.00 0.00 0.00 3.51
109 111 1.704628 TGACATGGTGTTGAGGTCCAT 59.295 47.619 0.00 0.00 41.88 3.41
124 126 0.179000 GGCCTCTTCATCGGTGACAT 59.821 55.000 0.00 0.00 33.11 3.06
134 136 0.401738 CTTGAACCCTGGCCTCTTCA 59.598 55.000 3.32 2.54 0.00 3.02
144 146 1.988107 TCCTGCATCTTCTTGAACCCT 59.012 47.619 0.00 0.00 0.00 4.34
145 147 2.087646 GTCCTGCATCTTCTTGAACCC 58.912 52.381 0.00 0.00 0.00 4.11
164 166 1.151668 GTCAAGCTTGAGCATGTCGT 58.848 50.000 29.13 0.00 45.16 4.34
178 180 3.622828 CCATAGATCACTCGTCGTCAAG 58.377 50.000 0.00 0.00 0.00 3.02
256 258 3.420893 GGAATTCAACCACACCATCTCA 58.579 45.455 7.93 0.00 0.00 3.27
276 284 2.038814 GCACACAAAAAGGGGTGGGG 62.039 60.000 0.00 0.00 38.84 4.96
359 374 5.525745 CCGTGCTTATGGTCAACATACAATA 59.474 40.000 0.00 0.00 41.61 1.90
369 384 0.682292 TCACACCGTGCTTATGGTCA 59.318 50.000 0.00 0.00 35.96 4.02
374 389 1.066215 TCATGCTCACACCGTGCTTAT 60.066 47.619 0.00 0.00 35.11 1.73
376 391 0.534877 TTCATGCTCACACCGTGCTT 60.535 50.000 0.00 0.00 35.11 3.91
377 393 1.071299 TTCATGCTCACACCGTGCT 59.929 52.632 0.00 0.00 35.11 4.40
381 397 1.069022 CCAAAGTTCATGCTCACACCG 60.069 52.381 0.00 0.00 0.00 4.94
387 404 0.169009 GTCGCCCAAAGTTCATGCTC 59.831 55.000 0.00 0.00 0.00 4.26
388 405 1.577328 CGTCGCCCAAAGTTCATGCT 61.577 55.000 0.00 0.00 0.00 3.79
413 431 2.427453 GTCCGTAGATCATGTCAGTGGT 59.573 50.000 0.00 0.00 0.00 4.16
420 438 0.385751 CTGGCGTCCGTAGATCATGT 59.614 55.000 0.00 0.00 0.00 3.21
433 452 2.158971 ACAAATTTGAAAAGGCTGGCGT 60.159 40.909 24.64 0.00 0.00 5.68
437 456 3.302610 CGCACACAAATTTGAAAAGGCTG 60.303 43.478 24.64 12.38 0.00 4.85
438 457 2.865551 CGCACACAAATTTGAAAAGGCT 59.134 40.909 24.64 0.00 0.00 4.58
604 630 4.425577 AAAACAGCTTGGCTATTTCTCG 57.574 40.909 0.00 0.00 33.98 4.04
605 631 6.018589 AGAAAAACAGCTTGGCTATTTCTC 57.981 37.500 15.08 5.40 39.08 2.87
606 632 6.410942 AAGAAAAACAGCTTGGCTATTTCT 57.589 33.333 15.08 15.08 41.93 2.52
607 633 7.651704 TGTAAAGAAAAACAGCTTGGCTATTTC 59.348 33.333 12.45 12.45 33.98 2.17
608 634 7.496747 TGTAAAGAAAAACAGCTTGGCTATTT 58.503 30.769 0.00 0.00 36.82 1.40
609 635 7.049799 TGTAAAGAAAAACAGCTTGGCTATT 57.950 32.000 0.00 0.00 36.40 1.73
610 636 6.648879 TGTAAAGAAAAACAGCTTGGCTAT 57.351 33.333 0.00 0.00 36.40 2.97
611 637 6.264292 TGATGTAAAGAAAAACAGCTTGGCTA 59.736 34.615 0.00 0.00 36.40 3.93
612 638 5.068987 TGATGTAAAGAAAAACAGCTTGGCT 59.931 36.000 0.00 0.00 40.77 4.75
613 639 5.175673 GTGATGTAAAGAAAAACAGCTTGGC 59.824 40.000 0.00 0.00 33.29 4.52
614 640 6.507023 AGTGATGTAAAGAAAAACAGCTTGG 58.493 36.000 0.00 0.00 33.29 3.61
615 641 7.195646 TGAGTGATGTAAAGAAAAACAGCTTG 58.804 34.615 0.00 0.00 33.29 4.01
616 642 7.333528 TGAGTGATGTAAAGAAAAACAGCTT 57.666 32.000 0.00 0.00 33.29 3.74
617 643 6.942532 TGAGTGATGTAAAGAAAAACAGCT 57.057 33.333 0.00 0.00 33.29 4.24
618 644 7.141363 ACATGAGTGATGTAAAGAAAAACAGC 58.859 34.615 0.00 0.00 43.96 4.40
619 645 9.599322 GTACATGAGTGATGTAAAGAAAAACAG 57.401 33.333 3.85 0.00 46.88 3.16
620 646 9.337396 AGTACATGAGTGATGTAAAGAAAAACA 57.663 29.630 3.85 0.00 46.88 2.83
623 649 8.783093 CCAAGTACATGAGTGATGTAAAGAAAA 58.217 33.333 3.85 0.00 46.88 2.29
624 650 8.154203 TCCAAGTACATGAGTGATGTAAAGAAA 58.846 33.333 3.85 0.00 46.88 2.52
625 651 7.676004 TCCAAGTACATGAGTGATGTAAAGAA 58.324 34.615 3.85 0.00 46.88 2.52
626 652 7.039011 ACTCCAAGTACATGAGTGATGTAAAGA 60.039 37.037 3.85 0.00 46.88 2.52
627 653 7.099764 ACTCCAAGTACATGAGTGATGTAAAG 58.900 38.462 3.85 1.22 46.88 1.85
628 654 7.004555 ACTCCAAGTACATGAGTGATGTAAA 57.995 36.000 3.85 0.00 46.88 2.01
629 655 6.605471 ACTCCAAGTACATGAGTGATGTAA 57.395 37.500 3.85 0.00 46.88 2.41
636 662 5.163364 GGATCATCACTCCAAGTACATGAGT 60.163 44.000 0.00 3.06 39.86 3.41
637 663 5.295950 GGATCATCACTCCAAGTACATGAG 58.704 45.833 0.00 2.43 33.05 2.90
638 664 4.101585 GGGATCATCACTCCAAGTACATGA 59.898 45.833 0.00 0.00 33.67 3.07
639 665 4.384056 GGGATCATCACTCCAAGTACATG 58.616 47.826 0.00 0.00 34.24 3.21
640 666 3.392616 GGGGATCATCACTCCAAGTACAT 59.607 47.826 0.00 0.00 34.24 2.29
641 667 2.771943 GGGGATCATCACTCCAAGTACA 59.228 50.000 0.00 0.00 34.24 2.90
642 668 3.041946 AGGGGATCATCACTCCAAGTAC 58.958 50.000 0.00 0.00 34.24 2.73
643 669 3.421394 AGGGGATCATCACTCCAAGTA 57.579 47.619 0.00 0.00 34.24 2.24
644 670 2.277008 AGGGGATCATCACTCCAAGT 57.723 50.000 0.00 0.00 34.24 3.16
645 671 2.038295 GCTAGGGGATCATCACTCCAAG 59.962 54.545 0.00 0.00 34.24 3.61
646 672 2.050144 GCTAGGGGATCATCACTCCAA 58.950 52.381 0.00 0.00 34.24 3.53
647 673 1.722034 GCTAGGGGATCATCACTCCA 58.278 55.000 0.00 0.00 34.24 3.86
648 674 0.980423 GGCTAGGGGATCATCACTCC 59.020 60.000 0.00 0.00 0.00 3.85
649 675 1.899142 GAGGCTAGGGGATCATCACTC 59.101 57.143 0.00 0.00 0.00 3.51
650 676 1.221523 TGAGGCTAGGGGATCATCACT 59.778 52.381 0.00 0.00 0.00 3.41
651 677 1.722034 TGAGGCTAGGGGATCATCAC 58.278 55.000 0.00 0.00 0.00 3.06
652 678 2.641321 CAATGAGGCTAGGGGATCATCA 59.359 50.000 0.00 0.00 31.31 3.07
653 679 2.641815 ACAATGAGGCTAGGGGATCATC 59.358 50.000 0.00 0.00 31.31 2.92
654 680 2.374504 CACAATGAGGCTAGGGGATCAT 59.625 50.000 0.00 0.00 33.91 2.45
655 681 1.770658 CACAATGAGGCTAGGGGATCA 59.229 52.381 0.00 0.00 0.00 2.92
656 682 1.072965 CCACAATGAGGCTAGGGGATC 59.927 57.143 0.00 0.00 0.00 3.36
657 683 1.143813 CCACAATGAGGCTAGGGGAT 58.856 55.000 0.00 0.00 0.00 3.85
658 684 0.044092 TCCACAATGAGGCTAGGGGA 59.956 55.000 0.00 0.00 0.00 4.81
659 685 0.471617 CTCCACAATGAGGCTAGGGG 59.528 60.000 0.00 0.00 0.00 4.79
660 686 1.207791 ACTCCACAATGAGGCTAGGG 58.792 55.000 0.00 0.00 36.66 3.53
661 687 3.356529 AAACTCCACAATGAGGCTAGG 57.643 47.619 0.00 0.00 36.66 3.02
662 688 4.761739 TCAAAAACTCCACAATGAGGCTAG 59.238 41.667 0.00 0.00 36.66 3.42
663 689 4.724399 TCAAAAACTCCACAATGAGGCTA 58.276 39.130 0.00 0.00 36.66 3.93
664 690 3.565307 TCAAAAACTCCACAATGAGGCT 58.435 40.909 0.00 0.00 36.66 4.58
665 691 4.022068 TGATCAAAAACTCCACAATGAGGC 60.022 41.667 0.00 0.00 36.66 4.70
666 692 5.710513 TGATCAAAAACTCCACAATGAGG 57.289 39.130 0.00 0.00 36.66 3.86
667 693 5.626543 CGTTGATCAAAAACTCCACAATGAG 59.373 40.000 10.35 0.00 38.37 2.90
668 694 5.298026 TCGTTGATCAAAAACTCCACAATGA 59.702 36.000 10.35 0.00 32.14 2.57
669 695 5.518812 TCGTTGATCAAAAACTCCACAATG 58.481 37.500 10.35 0.00 0.00 2.82
670 696 5.766150 TCGTTGATCAAAAACTCCACAAT 57.234 34.783 10.35 0.00 0.00 2.71
671 697 5.766150 ATCGTTGATCAAAAACTCCACAA 57.234 34.783 10.35 0.00 0.00 3.33
672 698 5.766150 AATCGTTGATCAAAAACTCCACA 57.234 34.783 10.35 0.00 0.00 4.17
673 699 6.967199 GGATAATCGTTGATCAAAAACTCCAC 59.033 38.462 10.35 0.00 0.00 4.02
674 700 6.657117 TGGATAATCGTTGATCAAAAACTCCA 59.343 34.615 10.35 14.05 29.39 3.86
675 701 6.967199 GTGGATAATCGTTGATCAAAAACTCC 59.033 38.462 10.35 11.82 0.00 3.85
676 702 7.752695 AGTGGATAATCGTTGATCAAAAACTC 58.247 34.615 10.35 2.97 0.00 3.01
677 703 7.607991 AGAGTGGATAATCGTTGATCAAAAACT 59.392 33.333 10.35 3.74 0.00 2.66
678 704 7.752695 AGAGTGGATAATCGTTGATCAAAAAC 58.247 34.615 10.35 0.00 0.00 2.43
679 705 7.606073 TGAGAGTGGATAATCGTTGATCAAAAA 59.394 33.333 10.35 1.30 0.00 1.94
680 706 7.102993 TGAGAGTGGATAATCGTTGATCAAAA 58.897 34.615 10.35 1.70 0.00 2.44
681 707 6.639563 TGAGAGTGGATAATCGTTGATCAAA 58.360 36.000 10.35 0.00 0.00 2.69
682 708 6.220726 TGAGAGTGGATAATCGTTGATCAA 57.779 37.500 3.38 3.38 0.00 2.57
683 709 5.852282 TGAGAGTGGATAATCGTTGATCA 57.148 39.130 0.00 0.00 0.00 2.92
684 710 6.450545 TGATGAGAGTGGATAATCGTTGATC 58.549 40.000 0.00 0.00 0.00 2.92
685 711 6.410942 TGATGAGAGTGGATAATCGTTGAT 57.589 37.500 0.00 0.00 0.00 2.57
686 712 5.852282 TGATGAGAGTGGATAATCGTTGA 57.148 39.130 0.00 0.00 0.00 3.18
687 713 5.812127 TGTTGATGAGAGTGGATAATCGTTG 59.188 40.000 0.00 0.00 0.00 4.10
688 714 5.977635 TGTTGATGAGAGTGGATAATCGTT 58.022 37.500 0.00 0.00 0.00 3.85
689 715 5.598416 TGTTGATGAGAGTGGATAATCGT 57.402 39.130 0.00 0.00 0.00 3.73
690 716 6.510799 GCTTTGTTGATGAGAGTGGATAATCG 60.511 42.308 0.00 0.00 0.00 3.34
691 717 6.510799 CGCTTTGTTGATGAGAGTGGATAATC 60.511 42.308 0.00 0.00 0.00 1.75
692 718 5.295292 CGCTTTGTTGATGAGAGTGGATAAT 59.705 40.000 0.00 0.00 0.00 1.28
693 719 4.631377 CGCTTTGTTGATGAGAGTGGATAA 59.369 41.667 0.00 0.00 0.00 1.75
694 720 4.183865 CGCTTTGTTGATGAGAGTGGATA 58.816 43.478 0.00 0.00 0.00 2.59
695 721 3.005554 CGCTTTGTTGATGAGAGTGGAT 58.994 45.455 0.00 0.00 0.00 3.41
696 722 2.416747 CGCTTTGTTGATGAGAGTGGA 58.583 47.619 0.00 0.00 0.00 4.02
697 723 1.135859 GCGCTTTGTTGATGAGAGTGG 60.136 52.381 0.00 0.00 0.00 4.00
698 724 1.463034 CGCGCTTTGTTGATGAGAGTG 60.463 52.381 5.56 0.00 0.00 3.51
699 725 0.792640 CGCGCTTTGTTGATGAGAGT 59.207 50.000 5.56 0.00 0.00 3.24
700 726 0.792640 ACGCGCTTTGTTGATGAGAG 59.207 50.000 5.73 0.00 0.00 3.20
701 727 1.225855 AACGCGCTTTGTTGATGAGA 58.774 45.000 5.73 0.00 0.00 3.27
702 728 3.753774 AACGCGCTTTGTTGATGAG 57.246 47.368 5.73 0.00 0.00 2.90
707 733 1.830338 CGTTCAACGCGCTTTGTTG 59.170 52.632 23.79 20.41 46.23 3.33
708 734 4.278609 CGTTCAACGCGCTTTGTT 57.721 50.000 23.79 9.79 33.65 2.83
719 745 5.465935 AGCTTTGTTGAAAAAGACGTTCAA 58.534 33.333 0.00 0.00 41.50 2.69
720 746 5.054390 AGCTTTGTTGAAAAAGACGTTCA 57.946 34.783 0.00 0.00 39.12 3.18
721 747 5.454554 GGTAGCTTTGTTGAAAAAGACGTTC 59.545 40.000 0.00 0.00 39.12 3.95
722 748 5.124936 AGGTAGCTTTGTTGAAAAAGACGTT 59.875 36.000 0.00 0.00 39.12 3.99
723 749 4.638865 AGGTAGCTTTGTTGAAAAAGACGT 59.361 37.500 0.00 0.00 39.12 4.34
724 750 5.169836 AGGTAGCTTTGTTGAAAAAGACG 57.830 39.130 0.00 0.00 39.12 4.18
725 751 7.023197 TGTAGGTAGCTTTGTTGAAAAAGAC 57.977 36.000 0.00 0.00 39.12 3.01
726 752 7.633193 TTGTAGGTAGCTTTGTTGAAAAAGA 57.367 32.000 0.00 0.00 39.12 2.52
727 753 8.696410 TTTTGTAGGTAGCTTTGTTGAAAAAG 57.304 30.769 0.00 0.00 39.66 2.27
728 754 9.660180 ATTTTTGTAGGTAGCTTTGTTGAAAAA 57.340 25.926 0.00 4.20 0.00 1.94
729 755 9.660180 AATTTTTGTAGGTAGCTTTGTTGAAAA 57.340 25.926 0.00 1.05 0.00 2.29
730 756 9.660180 AAATTTTTGTAGGTAGCTTTGTTGAAA 57.340 25.926 0.00 0.00 0.00 2.69
731 757 9.092876 CAAATTTTTGTAGGTAGCTTTGTTGAA 57.907 29.630 0.00 0.00 33.59 2.69
732 758 7.223777 GCAAATTTTTGTAGGTAGCTTTGTTGA 59.776 33.333 0.00 0.00 40.24 3.18
733 759 7.010923 TGCAAATTTTTGTAGGTAGCTTTGTTG 59.989 33.333 0.00 0.00 40.24 3.33
734 760 7.044798 TGCAAATTTTTGTAGGTAGCTTTGTT 58.955 30.769 0.00 0.00 40.24 2.83
735 761 6.578023 TGCAAATTTTTGTAGGTAGCTTTGT 58.422 32.000 0.00 0.00 40.24 2.83
736 762 7.475771 TTGCAAATTTTTGTAGGTAGCTTTG 57.524 32.000 0.00 0.00 40.24 2.77
737 763 9.771534 TTATTGCAAATTTTTGTAGGTAGCTTT 57.228 25.926 1.71 0.00 40.24 3.51
738 764 9.771534 TTTATTGCAAATTTTTGTAGGTAGCTT 57.228 25.926 1.71 0.00 40.24 3.74
739 765 9.771534 TTTTATTGCAAATTTTTGTAGGTAGCT 57.228 25.926 1.71 0.00 40.24 3.32
765 791 2.010582 TTCAGCGCGCCTTGGTTTTT 62.011 50.000 30.33 1.73 0.00 1.94
766 792 2.485795 TTCAGCGCGCCTTGGTTTT 61.486 52.632 30.33 2.66 0.00 2.43
767 793 2.904866 TTCAGCGCGCCTTGGTTT 60.905 55.556 30.33 3.60 0.00 3.27
768 794 3.660111 GTTCAGCGCGCCTTGGTT 61.660 61.111 30.33 4.55 0.00 3.67
771 797 4.430423 GACGTTCAGCGCGCCTTG 62.430 66.667 30.33 21.26 46.11 3.61
772 798 4.664677 AGACGTTCAGCGCGCCTT 62.665 61.111 30.33 7.42 46.11 4.35
773 799 4.664677 AAGACGTTCAGCGCGCCT 62.665 61.111 30.33 13.23 46.11 5.52
774 800 2.711185 AAAAAGACGTTCAGCGCGCC 62.711 55.000 30.33 11.74 46.11 6.53
805 836 0.390735 GGTGACCACGCCGTATTTCT 60.391 55.000 0.00 0.00 36.93 2.52
806 837 2.084013 GGTGACCACGCCGTATTTC 58.916 57.895 0.00 0.00 36.93 2.17
822 853 2.285818 TGGGGGCCTGATAACGGT 60.286 61.111 0.84 0.00 0.00 4.83
823 854 2.192175 GTGGGGGCCTGATAACGG 59.808 66.667 0.84 0.00 0.00 4.44
825 856 0.623723 TCTTGTGGGGGCCTGATAAC 59.376 55.000 0.84 0.00 0.00 1.89
826 857 0.623723 GTCTTGTGGGGGCCTGATAA 59.376 55.000 0.84 0.00 0.00 1.75
827 858 0.548926 TGTCTTGTGGGGGCCTGATA 60.549 55.000 0.84 0.00 0.00 2.15
828 859 1.852157 TGTCTTGTGGGGGCCTGAT 60.852 57.895 0.84 0.00 0.00 2.90
829 860 2.449518 TGTCTTGTGGGGGCCTGA 60.450 61.111 0.84 0.00 0.00 3.86
830 861 2.034687 CTGTCTTGTGGGGGCCTG 59.965 66.667 0.84 0.00 0.00 4.85
831 862 3.971702 GCTGTCTTGTGGGGGCCT 61.972 66.667 0.84 0.00 0.00 5.19
920 951 1.142314 GAGCCAGAGCAGAGCAGAG 59.858 63.158 0.00 0.00 43.56 3.35
921 952 1.190178 TTGAGCCAGAGCAGAGCAGA 61.190 55.000 0.00 0.00 43.56 4.26
922 953 0.321387 TTTGAGCCAGAGCAGAGCAG 60.321 55.000 0.00 0.00 43.56 4.24
923 954 0.109153 TTTTGAGCCAGAGCAGAGCA 59.891 50.000 0.00 0.00 43.56 4.26
924 955 0.520847 GTTTTGAGCCAGAGCAGAGC 59.479 55.000 0.00 0.00 43.56 4.09
964 995 3.461773 TACTGGCGCTGGGAGAGC 61.462 66.667 7.64 0.00 45.20 4.09
966 997 1.035932 GTAGTACTGGCGCTGGGAGA 61.036 60.000 7.64 0.00 0.00 3.71
1210 1241 2.747855 GCCGAAGTGAAGCAGGGG 60.748 66.667 0.00 0.00 0.00 4.79
1270 1305 1.367665 GCACACAAACACGAGACGC 60.368 57.895 0.00 0.00 0.00 5.19
1553 1588 1.226859 GCATACAGTACAGGCGCGA 60.227 57.895 12.10 0.00 0.00 5.87
1555 1590 3.309675 CGCATACAGTACAGGCGC 58.690 61.111 0.00 0.00 41.27 6.53
1557 1592 3.050619 GTGATACGCATACAGTACAGGC 58.949 50.000 0.00 0.00 0.00 4.85
1558 1593 4.301637 TGTGATACGCATACAGTACAGG 57.698 45.455 0.00 0.00 0.00 4.00
1559 1594 6.345015 CGATTTGTGATACGCATACAGTACAG 60.345 42.308 0.00 0.00 0.00 2.74
1560 1595 5.457473 CGATTTGTGATACGCATACAGTACA 59.543 40.000 0.00 0.00 0.00 2.90
1561 1596 5.684184 TCGATTTGTGATACGCATACAGTAC 59.316 40.000 0.00 0.00 0.00 2.73
1562 1597 5.823353 TCGATTTGTGATACGCATACAGTA 58.177 37.500 0.00 0.00 0.00 2.74
1563 1598 4.678622 TCGATTTGTGATACGCATACAGT 58.321 39.130 0.00 0.00 0.00 3.55
1572 1607 5.050363 ACCATACGCAATCGATTTGTGATAC 60.050 40.000 18.47 0.46 46.63 2.24
1646 1681 5.877564 GCCAAGCAAAAGAAGAGATACTACT 59.122 40.000 0.00 0.00 0.00 2.57
1647 1682 5.877564 AGCCAAGCAAAAGAAGAGATACTAC 59.122 40.000 0.00 0.00 0.00 2.73
1648 1683 5.877012 CAGCCAAGCAAAAGAAGAGATACTA 59.123 40.000 0.00 0.00 0.00 1.82
1724 1759 2.663826 ACGCCTTCAGATCAGAGAAC 57.336 50.000 0.00 0.00 0.00 3.01
1787 1822 9.430838 GATTGTACAAAATCAAATCTGAGATCG 57.569 33.333 13.23 0.00 36.69 3.69
1926 1997 3.603532 CCTCAGCATTGACTTCAGCTAA 58.396 45.455 0.00 0.00 35.19 3.09
1974 2072 8.169268 GGTACTCAAATCTCAAAGTAAATCACG 58.831 37.037 0.00 0.00 0.00 4.35
2011 2109 8.922676 AGTATGTAAGTTGTCAGTTCAATTACG 58.077 33.333 0.00 0.00 31.81 3.18
2040 2138 3.865745 CCAAGCGGAGTGTCTGTAAATAG 59.134 47.826 0.00 0.00 0.00 1.73
2046 2144 2.031163 GCCAAGCGGAGTGTCTGT 59.969 61.111 0.00 0.00 0.00 3.41
2052 2150 1.098050 GATCAAATGCCAAGCGGAGT 58.902 50.000 0.00 0.00 0.00 3.85
2185 2283 3.745912 TCGCGACTCGATAGCCAT 58.254 55.556 3.71 0.00 43.16 4.40
2415 2513 7.337942 AGAGATAAATGCTTCAACTTACCCTTG 59.662 37.037 0.00 0.00 0.00 3.61
2583 2681 2.092753 ACCTGGGCAAGAGTGTATGATG 60.093 50.000 0.00 0.00 0.00 3.07
2598 2696 4.080299 ACCTTAAGCTTATGAAGACCTGGG 60.080 45.833 18.38 1.35 0.00 4.45
2791 2889 3.265791 CTCTTACAGCTTCATCACCCAC 58.734 50.000 0.00 0.00 0.00 4.61
2832 2930 1.654220 CAACACCAGTTTCCGCAGG 59.346 57.895 0.00 0.00 43.40 4.85
2842 2940 0.250727 ACGGTTCCATCCAACACCAG 60.251 55.000 0.00 0.00 0.00 4.00
2970 3068 2.413453 GCTCTCTTTAACAGAACCAGCG 59.587 50.000 0.00 0.00 0.00 5.18
3027 3125 4.266714 TCACCATGATAGTGTCGTCTGTA 58.733 43.478 0.00 0.00 36.58 2.74
3030 3128 5.697473 CTATCACCATGATAGTGTCGTCT 57.303 43.478 14.98 0.00 46.92 4.18
3357 3455 1.396607 CGGATGTGTCCCGGTATGGA 61.397 60.000 0.00 0.00 41.83 3.41
3402 3500 2.131183 GGCTCAAGATCTTCGGAATCG 58.869 52.381 4.57 0.00 37.82 3.34
3545 3643 2.107204 AGAGACCAACACAAGGCTGATT 59.893 45.455 0.00 0.00 0.00 2.57
3551 3649 3.016736 ACAACAAGAGACCAACACAAGG 58.983 45.455 0.00 0.00 0.00 3.61
3553 3651 6.261381 GGTAATACAACAAGAGACCAACACAA 59.739 38.462 0.00 0.00 0.00 3.33
3590 3688 6.970484 TGAGGAAAGATAACAGCAAGAAAAC 58.030 36.000 0.00 0.00 0.00 2.43
3727 3828 9.845305 GAGAAATAACGTCCAGAATAAATAACG 57.155 33.333 0.00 0.00 36.29 3.18
3731 3832 9.245962 CGTAGAGAAATAACGTCCAGAATAAAT 57.754 33.333 0.00 0.00 32.16 1.40
3735 3836 5.041940 GCGTAGAGAAATAACGTCCAGAAT 58.958 41.667 0.00 0.00 38.81 2.40
3737 3838 3.441222 TGCGTAGAGAAATAACGTCCAGA 59.559 43.478 0.00 0.00 38.81 3.86
3739 3840 3.853831 TGCGTAGAGAAATAACGTCCA 57.146 42.857 0.00 0.00 38.81 4.02
3740 3841 3.000022 GCTTGCGTAGAGAAATAACGTCC 60.000 47.826 0.00 0.00 38.81 4.79
3741 3842 3.000022 GGCTTGCGTAGAGAAATAACGTC 60.000 47.826 0.00 0.00 38.81 4.34
3742 3843 2.928116 GGCTTGCGTAGAGAAATAACGT 59.072 45.455 0.00 0.00 38.81 3.99
3743 3844 3.187700 AGGCTTGCGTAGAGAAATAACG 58.812 45.455 0.00 0.00 39.55 3.18
3744 3845 4.870991 AGAAGGCTTGCGTAGAGAAATAAC 59.129 41.667 3.46 0.00 0.00 1.89
3766 4026 3.062763 CAATAGCTAATCGGCAGGACAG 58.937 50.000 0.00 0.00 34.17 3.51
3780 4040 5.727434 CAAGGCCAAGAAAAATCAATAGCT 58.273 37.500 5.01 0.00 0.00 3.32
3814 4083 7.255381 CCACCTGATGATAAAAATAGAAGCCTG 60.255 40.741 0.00 0.00 0.00 4.85
3854 4129 3.061429 GCACGAAGATCAGCTTACAGAAC 59.939 47.826 0.00 0.00 36.83 3.01
3873 4150 0.458669 CATTTGGAGGATGGCAGCAC 59.541 55.000 4.64 0.00 0.00 4.40
3910 4188 9.725019 TTAGGATGATGTATTCATTTCGCTTAT 57.275 29.630 0.00 0.00 45.29 1.73
3911 4189 9.208022 CTTAGGATGATGTATTCATTTCGCTTA 57.792 33.333 0.00 0.00 45.29 3.09
3915 4193 7.664082 AGCTTAGGATGATGTATTCATTTCG 57.336 36.000 0.00 0.00 45.29 3.46
3921 4199 8.327941 TGCAATTAGCTTAGGATGATGTATTC 57.672 34.615 0.00 0.00 45.94 1.75
3925 4203 5.688807 ACTGCAATTAGCTTAGGATGATGT 58.311 37.500 0.00 0.00 45.94 3.06
3985 4363 3.610911 AGGTGAGGGAAATCGACATTTC 58.389 45.455 3.37 3.37 45.14 2.17
3991 4371 1.067142 CGTGAAGGTGAGGGAAATCGA 60.067 52.381 0.00 0.00 0.00 3.59
3995 4375 2.224354 GGTTACGTGAAGGTGAGGGAAA 60.224 50.000 0.00 0.00 0.00 3.13
4029 4410 3.604667 CTGCCTTTTGCCACGCCA 61.605 61.111 0.00 0.00 40.16 5.69
4031 4412 1.661509 GAACTGCCTTTTGCCACGC 60.662 57.895 0.00 0.00 40.16 5.34
4032 4413 0.318107 CTGAACTGCCTTTTGCCACG 60.318 55.000 0.00 0.00 40.16 4.94
4054 4435 6.491403 GTGGATGATTATTAGGCAAGTTGGAT 59.509 38.462 4.75 0.00 0.00 3.41
4070 4451 5.982890 ATGTTCCTTTTTCGTGGATGATT 57.017 34.783 0.00 0.00 31.76 2.57
4074 4455 8.575649 AGTAATAATGTTCCTTTTTCGTGGAT 57.424 30.769 0.00 0.00 31.76 3.41
4075 4456 7.120138 GGAGTAATAATGTTCCTTTTTCGTGGA 59.880 37.037 0.00 0.00 0.00 4.02
4077 4458 8.040716 AGGAGTAATAATGTTCCTTTTTCGTG 57.959 34.615 0.00 0.00 36.69 4.35
4172 4553 4.083590 GCTTTCAGCAACAACAACCAAAAA 60.084 37.500 0.00 0.00 41.89 1.94
4173 4554 3.434984 GCTTTCAGCAACAACAACCAAAA 59.565 39.130 0.00 0.00 41.89 2.44
4174 4555 2.999355 GCTTTCAGCAACAACAACCAAA 59.001 40.909 0.00 0.00 41.89 3.28
4175 4556 2.233431 AGCTTTCAGCAACAACAACCAA 59.767 40.909 0.00 0.00 45.56 3.67
4176 4557 1.824230 AGCTTTCAGCAACAACAACCA 59.176 42.857 0.00 0.00 45.56 3.67
4177 4558 2.099756 AGAGCTTTCAGCAACAACAACC 59.900 45.455 0.00 0.00 45.56 3.77
4178 4559 3.427161 AGAGCTTTCAGCAACAACAAC 57.573 42.857 0.00 0.00 45.56 3.32
4179 4560 5.574891 TTAAGAGCTTTCAGCAACAACAA 57.425 34.783 0.00 0.00 45.56 2.83
4180 4561 5.574891 TTTAAGAGCTTTCAGCAACAACA 57.425 34.783 0.00 0.00 45.56 3.33
4181 4562 5.107722 GCATTTAAGAGCTTTCAGCAACAAC 60.108 40.000 0.00 0.00 45.56 3.32
4182 4563 4.984161 GCATTTAAGAGCTTTCAGCAACAA 59.016 37.500 0.00 0.00 45.56 2.83
4183 4564 4.037803 TGCATTTAAGAGCTTTCAGCAACA 59.962 37.500 0.00 0.00 45.56 3.33
4184 4565 4.549458 TGCATTTAAGAGCTTTCAGCAAC 58.451 39.130 0.00 0.00 45.56 4.17
4185 4566 4.852134 TGCATTTAAGAGCTTTCAGCAA 57.148 36.364 0.00 0.00 45.56 3.91
4186 4567 4.460034 TCATGCATTTAAGAGCTTTCAGCA 59.540 37.500 0.00 0.00 45.56 4.41
4187 4568 4.990257 TCATGCATTTAAGAGCTTTCAGC 58.010 39.130 0.00 0.00 42.84 4.26
4188 4569 5.459107 GCATCATGCATTTAAGAGCTTTCAG 59.541 40.000 4.20 0.00 44.26 3.02
4189 4570 5.345702 GCATCATGCATTTAAGAGCTTTCA 58.654 37.500 4.20 0.00 44.26 2.69
4210 4591 3.028130 TCTCATACTAACACCGGATGCA 58.972 45.455 9.46 0.00 0.00 3.96
4218 4599 4.631377 TGTGCAGCAATCTCATACTAACAC 59.369 41.667 0.00 0.00 0.00 3.32
4219 4600 4.831107 TGTGCAGCAATCTCATACTAACA 58.169 39.130 0.00 0.00 0.00 2.41
4230 4611 2.548904 TGCCAAAATTTGTGCAGCAATC 59.451 40.909 14.66 0.00 36.89 2.67
4235 4616 6.971184 TGTTTTTATTGCCAAAATTTGTGCAG 59.029 30.769 16.84 0.15 37.84 4.41
4269 4650 9.936759 TCACACACTCACATATCATAACTTAAA 57.063 29.630 0.00 0.00 0.00 1.52
4270 4651 9.936759 TTCACACACTCACATATCATAACTTAA 57.063 29.630 0.00 0.00 0.00 1.85
4271 4652 9.366216 GTTCACACACTCACATATCATAACTTA 57.634 33.333 0.00 0.00 0.00 2.24
4272 4653 8.097038 AGTTCACACACTCACATATCATAACTT 58.903 33.333 0.00 0.00 0.00 2.66
4273 4654 7.615403 AGTTCACACACTCACATATCATAACT 58.385 34.615 0.00 0.00 0.00 2.24
4274 4655 7.834068 AGTTCACACACTCACATATCATAAC 57.166 36.000 0.00 0.00 0.00 1.89
4280 4661 7.716998 AGAAGAAAAGTTCACACACTCACATAT 59.283 33.333 0.00 0.00 0.00 1.78
4282 4663 5.882557 AGAAGAAAAGTTCACACACTCACAT 59.117 36.000 0.00 0.00 0.00 3.21
4285 4666 5.705441 ACAAGAAGAAAAGTTCACACACTCA 59.295 36.000 0.00 0.00 0.00 3.41
4351 4732 8.656849 TGATACTTCTAAAAAGAACTGCGAATC 58.343 33.333 0.00 0.00 0.00 2.52
4362 4743 8.406297 GGCCCTAAATGTGATACTTCTAAAAAG 58.594 37.037 0.00 0.00 0.00 2.27
4363 4744 8.113462 AGGCCCTAAATGTGATACTTCTAAAAA 58.887 33.333 0.00 0.00 0.00 1.94
4364 4745 7.556275 CAGGCCCTAAATGTGATACTTCTAAAA 59.444 37.037 0.00 0.00 0.00 1.52
4365 4746 7.054124 CAGGCCCTAAATGTGATACTTCTAAA 58.946 38.462 0.00 0.00 0.00 1.85
4366 4747 6.157994 ACAGGCCCTAAATGTGATACTTCTAA 59.842 38.462 0.00 0.00 0.00 2.10
4375 4756 2.642311 TCAGAACAGGCCCTAAATGTGA 59.358 45.455 0.00 0.00 0.00 3.58
4384 4765 0.035915 GAGGAGTTCAGAACAGGCCC 60.036 60.000 15.85 10.23 0.00 5.80
4385 4766 0.035915 GGAGGAGTTCAGAACAGGCC 60.036 60.000 15.85 12.73 0.00 5.19
4386 4767 0.687354 TGGAGGAGTTCAGAACAGGC 59.313 55.000 15.85 4.41 0.00 4.85
4387 4768 2.370189 AGTTGGAGGAGTTCAGAACAGG 59.630 50.000 15.85 0.00 0.00 4.00
4388 4769 3.323403 AGAGTTGGAGGAGTTCAGAACAG 59.677 47.826 15.85 0.00 0.00 3.16
4389 4770 3.309296 AGAGTTGGAGGAGTTCAGAACA 58.691 45.455 15.85 0.00 0.00 3.18
4390 4771 3.322254 TGAGAGTTGGAGGAGTTCAGAAC 59.678 47.826 5.00 5.00 0.00 3.01
4391 4772 3.576861 TGAGAGTTGGAGGAGTTCAGAA 58.423 45.455 0.00 0.00 0.00 3.02
4392 4773 3.244887 TGAGAGTTGGAGGAGTTCAGA 57.755 47.619 0.00 0.00 0.00 3.27
4393 4774 3.323403 AGTTGAGAGTTGGAGGAGTTCAG 59.677 47.826 0.00 0.00 0.00 3.02
4394 4775 3.309296 AGTTGAGAGTTGGAGGAGTTCA 58.691 45.455 0.00 0.00 0.00 3.18
4395 4776 3.306433 GGAGTTGAGAGTTGGAGGAGTTC 60.306 52.174 0.00 0.00 0.00 3.01
4396 4777 2.635427 GGAGTTGAGAGTTGGAGGAGTT 59.365 50.000 0.00 0.00 0.00 3.01
4397 4778 2.252714 GGAGTTGAGAGTTGGAGGAGT 58.747 52.381 0.00 0.00 0.00 3.85
4398 4779 2.028567 GTGGAGTTGAGAGTTGGAGGAG 60.029 54.545 0.00 0.00 0.00 3.69
4399 4780 1.971357 GTGGAGTTGAGAGTTGGAGGA 59.029 52.381 0.00 0.00 0.00 3.71
4400 4781 1.694150 TGTGGAGTTGAGAGTTGGAGG 59.306 52.381 0.00 0.00 0.00 4.30
4401 4782 3.475566 TTGTGGAGTTGAGAGTTGGAG 57.524 47.619 0.00 0.00 0.00 3.86
4402 4783 3.199946 AGTTTGTGGAGTTGAGAGTTGGA 59.800 43.478 0.00 0.00 0.00 3.53
4403 4784 3.545703 AGTTTGTGGAGTTGAGAGTTGG 58.454 45.455 0.00 0.00 0.00 3.77
4404 4785 4.878397 AGAAGTTTGTGGAGTTGAGAGTTG 59.122 41.667 0.00 0.00 0.00 3.16
4405 4786 5.104259 AGAAGTTTGTGGAGTTGAGAGTT 57.896 39.130 0.00 0.00 0.00 3.01
4406 4787 4.698575 GAGAAGTTTGTGGAGTTGAGAGT 58.301 43.478 0.00 0.00 0.00 3.24
4407 4788 3.738282 CGAGAAGTTTGTGGAGTTGAGAG 59.262 47.826 0.00 0.00 0.00 3.20
4408 4789 3.132289 ACGAGAAGTTTGTGGAGTTGAGA 59.868 43.478 0.00 0.00 0.00 3.27
4409 4790 3.458189 ACGAGAAGTTTGTGGAGTTGAG 58.542 45.455 0.00 0.00 0.00 3.02
4410 4791 3.536956 ACGAGAAGTTTGTGGAGTTGA 57.463 42.857 0.00 0.00 0.00 3.18
4424 4805 2.159071 TCGGGTCAACTTCAAACGAGAA 60.159 45.455 0.00 0.00 0.00 2.87
4425 4806 1.409790 TCGGGTCAACTTCAAACGAGA 59.590 47.619 0.00 0.00 0.00 4.04
4426 4807 1.860676 TCGGGTCAACTTCAAACGAG 58.139 50.000 0.00 0.00 0.00 4.18
4427 4808 1.935199 GTTCGGGTCAACTTCAAACGA 59.065 47.619 0.00 0.00 0.00 3.85
4428 4809 1.332552 CGTTCGGGTCAACTTCAAACG 60.333 52.381 0.00 0.00 33.17 3.60
4429 4810 1.596220 GCGTTCGGGTCAACTTCAAAC 60.596 52.381 0.00 0.00 0.00 2.93
4430 4811 0.658897 GCGTTCGGGTCAACTTCAAA 59.341 50.000 0.00 0.00 0.00 2.69
4431 4812 0.179067 AGCGTTCGGGTCAACTTCAA 60.179 50.000 0.00 0.00 0.00 2.69
4432 4813 0.179067 AAGCGTTCGGGTCAACTTCA 60.179 50.000 0.00 0.00 0.00 3.02
4433 4814 0.942252 AAAGCGTTCGGGTCAACTTC 59.058 50.000 0.00 0.00 0.00 3.01
4434 4815 2.140717 CTAAAGCGTTCGGGTCAACTT 58.859 47.619 0.00 0.00 0.00 2.66
4435 4816 1.792006 CTAAAGCGTTCGGGTCAACT 58.208 50.000 0.00 0.00 0.00 3.16
4436 4817 0.165295 GCTAAAGCGTTCGGGTCAAC 59.835 55.000 0.00 0.00 0.00 3.18
4437 4818 2.535588 GCTAAAGCGTTCGGGTCAA 58.464 52.632 0.00 0.00 0.00 3.18
4438 4819 4.272100 GCTAAAGCGTTCGGGTCA 57.728 55.556 0.00 0.00 0.00 4.02
4448 4829 0.882484 GGAGATCCCGCAGCTAAAGC 60.882 60.000 0.00 0.00 42.49 3.51
4449 4830 3.297391 GGAGATCCCGCAGCTAAAG 57.703 57.895 0.00 0.00 0.00 1.85
4459 4840 3.607661 GAGGACCGCGGAGATCCC 61.608 72.222 35.90 22.37 30.41 3.85
4460 4841 3.967335 CGAGGACCGCGGAGATCC 61.967 72.222 35.90 28.12 30.17 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.