Multiple sequence alignment - TraesCS4B01G331200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G331200 chr4B 100.000 2969 0 0 1 2969 621751107 621754075 0.000000e+00 5483.0
1 TraesCS4B01G331200 chr4D 93.297 1477 58 19 585 2049 486936512 486937959 0.000000e+00 2141.0
2 TraesCS4B01G331200 chr5A 90.909 1364 87 25 702 2048 667323271 667324614 0.000000e+00 1797.0
3 TraesCS4B01G331200 chr5A 73.352 364 79 16 1052 1406 457894044 457894398 5.200000e-23 119.0
4 TraesCS4B01G331200 chr5A 83.871 93 13 2 1318 1409 631858839 631858748 1.470000e-13 87.9
5 TraesCS4B01G331200 chr3B 95.793 927 38 1 2043 2969 815850674 815851599 0.000000e+00 1495.0
6 TraesCS4B01G331200 chr3B 95.445 922 40 2 2049 2969 731350635 731351555 0.000000e+00 1469.0
7 TraesCS4B01G331200 chr3B 95.140 926 43 2 2045 2969 554092649 554091725 0.000000e+00 1459.0
8 TraesCS4B01G331200 chr3B 92.377 223 15 2 3 224 34289030 34289251 1.720000e-82 316.0
9 TraesCS4B01G331200 chr3B 80.882 136 25 1 386 521 708008275 708008409 4.050000e-19 106.0
10 TraesCS4B01G331200 chr5B 95.690 928 38 2 2043 2969 43970121 43969195 0.000000e+00 1491.0
11 TraesCS4B01G331200 chr5B 93.722 223 13 1 3 224 577611457 577611235 1.710000e-87 333.0
12 TraesCS4B01G331200 chr5B 91.775 231 17 2 1 229 697384237 697384007 1.330000e-83 320.0
13 TraesCS4B01G331200 chr5B 92.377 223 16 1 3 224 418718710 418718932 1.720000e-82 316.0
14 TraesCS4B01G331200 chr6B 95.464 926 40 2 2045 2969 634311100 634310176 0.000000e+00 1476.0
15 TraesCS4B01G331200 chr6B 95.243 925 43 1 2045 2969 73180070 73179147 0.000000e+00 1463.0
16 TraesCS4B01G331200 chr6B 92.411 224 16 1 3 225 572188862 572188639 4.780000e-83 318.0
17 TraesCS4B01G331200 chr6B 82.609 138 23 1 389 526 646642680 646642544 1.450000e-23 121.0
18 TraesCS4B01G331200 chr6B 92.683 41 2 1 388 427 439678534 439678494 1.150000e-04 58.4
19 TraesCS4B01G331200 chr1A 95.351 925 42 1 2045 2969 499618196 499619119 0.000000e+00 1469.0
20 TraesCS4B01G331200 chrUn 95.341 923 39 4 2048 2968 34778925 34778005 0.000000e+00 1463.0
21 TraesCS4B01G331200 chr7B 95.243 925 41 3 2046 2969 334487681 334488603 0.000000e+00 1461.0
22 TraesCS4B01G331200 chr7B 92.140 229 13 5 3 227 133749365 133749138 4.780000e-83 318.0
23 TraesCS4B01G331200 chr7B 85.390 308 37 7 1526 1832 591258489 591258789 2.220000e-81 313.0
24 TraesCS4B01G331200 chr7B 86.505 289 31 7 1545 1832 591287195 591287476 7.990000e-81 311.0
25 TraesCS4B01G331200 chr7B 89.062 128 14 0 1830 1957 591293113 591293240 3.060000e-35 159.0
26 TraesCS4B01G331200 chr7B 73.298 382 78 19 1016 1391 87125842 87126205 5.200000e-23 119.0
27 TraesCS4B01G331200 chr1B 94.619 223 11 1 3 224 639860303 639860081 7.880000e-91 344.0
28 TraesCS4B01G331200 chr1B 86.131 137 18 1 389 525 669240473 669240608 2.380000e-31 147.0
29 TraesCS4B01G331200 chr2B 92.544 228 16 1 3 229 111248518 111248745 2.850000e-85 326.0
30 TraesCS4B01G331200 chr2B 92.857 224 15 1 3 225 765621948 765621725 1.030000e-84 324.0
31 TraesCS4B01G331200 chr2D 85.714 140 18 2 388 526 575230585 575230447 2.380000e-31 147.0
32 TraesCS4B01G331200 chr2D 84.298 121 14 4 391 509 405175855 405175738 2.420000e-21 113.0
33 TraesCS4B01G331200 chr2D 87.838 74 4 3 388 459 76656582 76656652 6.820000e-12 82.4
34 TraesCS4B01G331200 chr7D 74.545 385 68 22 1016 1391 125909036 125909399 1.110000e-29 141.0
35 TraesCS4B01G331200 chr7A 73.822 382 78 17 1015 1391 127371083 127371447 6.680000e-27 132.0
36 TraesCS4B01G331200 chr7A 79.562 137 23 5 392 526 11084803 11084670 3.150000e-15 93.5
37 TraesCS4B01G331200 chr5D 73.077 364 80 16 1052 1406 356197582 356197936 2.420000e-21 113.0
38 TraesCS4B01G331200 chr5D 80.000 145 21 5 384 526 200488388 200488526 1.880000e-17 100.0
39 TraesCS4B01G331200 chr3D 78.358 134 17 9 388 520 560104463 560104341 3.170000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G331200 chr4B 621751107 621754075 2968 False 5483 5483 100.000 1 2969 1 chr4B.!!$F1 2968
1 TraesCS4B01G331200 chr4D 486936512 486937959 1447 False 2141 2141 93.297 585 2049 1 chr4D.!!$F1 1464
2 TraesCS4B01G331200 chr5A 667323271 667324614 1343 False 1797 1797 90.909 702 2048 1 chr5A.!!$F2 1346
3 TraesCS4B01G331200 chr3B 815850674 815851599 925 False 1495 1495 95.793 2043 2969 1 chr3B.!!$F4 926
4 TraesCS4B01G331200 chr3B 731350635 731351555 920 False 1469 1469 95.445 2049 2969 1 chr3B.!!$F3 920
5 TraesCS4B01G331200 chr3B 554091725 554092649 924 True 1459 1459 95.140 2045 2969 1 chr3B.!!$R1 924
6 TraesCS4B01G331200 chr5B 43969195 43970121 926 True 1491 1491 95.690 2043 2969 1 chr5B.!!$R1 926
7 TraesCS4B01G331200 chr6B 634310176 634311100 924 True 1476 1476 95.464 2045 2969 1 chr6B.!!$R4 924
8 TraesCS4B01G331200 chr6B 73179147 73180070 923 True 1463 1463 95.243 2045 2969 1 chr6B.!!$R1 924
9 TraesCS4B01G331200 chr1A 499618196 499619119 923 False 1469 1469 95.351 2045 2969 1 chr1A.!!$F1 924
10 TraesCS4B01G331200 chrUn 34778005 34778925 920 True 1463 1463 95.341 2048 2968 1 chrUn.!!$R1 920
11 TraesCS4B01G331200 chr7B 334487681 334488603 922 False 1461 1461 95.243 2046 2969 1 chr7B.!!$F2 923

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
191 192 0.034756 TTTGAGAAGCGCTGCTGGTA 59.965 50.0 26.35 6.01 39.62 3.25 F
488 489 0.035725 TCTCTACGAGCACCTCCGAA 60.036 55.0 0.00 0.00 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1844 1879 0.174389 GATGGAGTCGAGCAGCTCAA 59.826 55.0 22.49 0.0 33.66 3.02 R
2236 2274 1.108776 GGTACGAGGCCTGACATACA 58.891 55.0 12.00 0.0 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.491554 GCAGTAGCGCGATTCATTATAG 57.508 45.455 12.10 0.00 0.00 1.31
28 29 3.304559 GCAGTAGCGCGATTCATTATAGG 59.695 47.826 12.10 0.00 0.00 2.57
29 30 3.859961 CAGTAGCGCGATTCATTATAGGG 59.140 47.826 12.10 0.00 0.00 3.53
30 31 1.726853 AGCGCGATTCATTATAGGGC 58.273 50.000 12.10 0.00 44.52 5.19
31 32 0.370273 GCGCGATTCATTATAGGGCG 59.630 55.000 12.10 0.00 44.41 6.13
32 33 0.370273 CGCGATTCATTATAGGGCGC 59.630 55.000 0.00 0.00 39.60 6.53
33 34 1.726853 GCGATTCATTATAGGGCGCT 58.273 50.000 7.64 8.86 39.84 5.92
34 35 2.734175 CGCGATTCATTATAGGGCGCTA 60.734 50.000 13.45 13.45 40.68 4.26
35 36 2.603560 GCGATTCATTATAGGGCGCTAC 59.396 50.000 13.35 0.00 39.84 3.58
36 37 3.676324 GCGATTCATTATAGGGCGCTACT 60.676 47.826 13.35 9.01 39.84 2.57
37 38 3.859961 CGATTCATTATAGGGCGCTACTG 59.140 47.826 13.35 10.90 0.00 2.74
38 39 2.743636 TCATTATAGGGCGCTACTGC 57.256 50.000 13.35 0.00 0.00 4.40
39 40 2.248248 TCATTATAGGGCGCTACTGCT 58.752 47.619 13.35 0.00 36.97 4.24
40 41 3.427573 TCATTATAGGGCGCTACTGCTA 58.572 45.455 13.35 0.00 36.97 3.49
41 42 4.023980 TCATTATAGGGCGCTACTGCTAT 58.976 43.478 13.35 0.00 36.97 2.97
42 43 5.198207 TCATTATAGGGCGCTACTGCTATA 58.802 41.667 13.35 0.00 36.97 1.31
43 44 5.655090 TCATTATAGGGCGCTACTGCTATAA 59.345 40.000 13.35 8.13 36.97 0.98
44 45 3.870633 ATAGGGCGCTACTGCTATAAC 57.129 47.619 13.35 0.00 36.97 1.89
45 46 1.705873 AGGGCGCTACTGCTATAACT 58.294 50.000 7.64 0.00 36.97 2.24
46 47 2.872732 AGGGCGCTACTGCTATAACTA 58.127 47.619 7.64 0.00 36.97 2.24
47 48 2.820787 AGGGCGCTACTGCTATAACTAG 59.179 50.000 7.64 0.00 36.97 2.57
56 57 2.067414 GCTATAACTAGCTGGACGGC 57.933 55.000 3.17 0.00 45.78 5.68
57 58 1.666311 GCTATAACTAGCTGGACGGCG 60.666 57.143 4.80 4.80 45.78 6.46
58 59 1.878088 CTATAACTAGCTGGACGGCGA 59.122 52.381 16.62 0.00 37.29 5.54
59 60 0.669077 ATAACTAGCTGGACGGCGAG 59.331 55.000 16.62 11.04 40.04 5.03
60 61 1.381928 TAACTAGCTGGACGGCGAGG 61.382 60.000 16.62 1.04 38.84 4.63
61 62 3.141488 CTAGCTGGACGGCGAGGT 61.141 66.667 16.62 10.61 37.29 3.85
62 63 3.127352 CTAGCTGGACGGCGAGGTC 62.127 68.421 16.62 0.00 37.29 3.85
63 64 3.931190 TAGCTGGACGGCGAGGTCA 62.931 63.158 16.62 4.98 38.70 4.02
64 65 4.148825 GCTGGACGGCGAGGTCAT 62.149 66.667 16.62 0.00 38.70 3.06
65 66 2.202797 CTGGACGGCGAGGTCATG 60.203 66.667 16.62 0.00 38.70 3.07
66 67 3.723235 CTGGACGGCGAGGTCATGG 62.723 68.421 16.62 0.00 38.70 3.66
68 69 4.451150 GACGGCGAGGTCATGGCA 62.451 66.667 16.62 0.00 36.91 4.92
69 70 3.950794 GACGGCGAGGTCATGGCAA 62.951 63.158 16.62 0.00 36.91 4.52
70 71 2.514592 CGGCGAGGTCATGGCAAT 60.515 61.111 0.00 0.00 33.59 3.56
71 72 2.114670 CGGCGAGGTCATGGCAATT 61.115 57.895 0.00 0.00 33.59 2.32
72 73 0.813610 CGGCGAGGTCATGGCAATTA 60.814 55.000 0.00 0.00 33.59 1.40
73 74 0.947244 GGCGAGGTCATGGCAATTAG 59.053 55.000 0.00 0.00 33.59 1.73
74 75 1.475034 GGCGAGGTCATGGCAATTAGA 60.475 52.381 0.00 0.00 33.59 2.10
75 76 1.869767 GCGAGGTCATGGCAATTAGAG 59.130 52.381 0.00 0.00 31.94 2.43
76 77 1.869767 CGAGGTCATGGCAATTAGAGC 59.130 52.381 0.00 0.00 0.00 4.09
77 78 2.742856 CGAGGTCATGGCAATTAGAGCA 60.743 50.000 0.00 0.00 0.00 4.26
78 79 2.877168 GAGGTCATGGCAATTAGAGCAG 59.123 50.000 0.00 0.00 0.00 4.24
79 80 2.240667 AGGTCATGGCAATTAGAGCAGT 59.759 45.455 0.00 0.00 0.00 4.40
80 81 3.455910 AGGTCATGGCAATTAGAGCAGTA 59.544 43.478 0.00 0.00 0.00 2.74
81 82 4.080356 AGGTCATGGCAATTAGAGCAGTAA 60.080 41.667 0.00 0.00 0.00 2.24
82 83 4.035675 GGTCATGGCAATTAGAGCAGTAAC 59.964 45.833 0.00 0.00 0.00 2.50
83 84 3.871006 TCATGGCAATTAGAGCAGTAACG 59.129 43.478 0.00 0.00 0.00 3.18
84 85 2.006888 TGGCAATTAGAGCAGTAACGC 58.993 47.619 0.00 0.00 0.00 4.84
85 86 1.004927 GGCAATTAGAGCAGTAACGCG 60.005 52.381 3.53 3.53 36.85 6.01
86 87 1.004927 GCAATTAGAGCAGTAACGCGG 60.005 52.381 12.47 0.00 36.85 6.46
87 88 2.268298 CAATTAGAGCAGTAACGCGGT 58.732 47.619 12.47 6.42 36.85 5.68
88 89 2.667473 ATTAGAGCAGTAACGCGGTT 57.333 45.000 12.47 5.03 36.85 4.44
89 90 2.443887 TTAGAGCAGTAACGCGGTTT 57.556 45.000 12.47 0.00 36.85 3.27
90 91 3.574284 TTAGAGCAGTAACGCGGTTTA 57.426 42.857 12.47 0.00 36.85 2.01
91 92 1.992170 AGAGCAGTAACGCGGTTTAG 58.008 50.000 12.47 0.00 36.85 1.85
92 93 1.542915 AGAGCAGTAACGCGGTTTAGA 59.457 47.619 12.47 0.00 36.85 2.10
93 94 1.918609 GAGCAGTAACGCGGTTTAGAG 59.081 52.381 12.47 0.00 36.85 2.43
94 95 0.997196 GCAGTAACGCGGTTTAGAGG 59.003 55.000 12.47 0.00 0.00 3.69
95 96 1.636988 CAGTAACGCGGTTTAGAGGG 58.363 55.000 12.47 0.00 0.00 4.30
96 97 0.533951 AGTAACGCGGTTTAGAGGGG 59.466 55.000 12.47 0.00 0.00 4.79
97 98 0.532115 GTAACGCGGTTTAGAGGGGA 59.468 55.000 12.47 0.00 0.00 4.81
98 99 0.532115 TAACGCGGTTTAGAGGGGAC 59.468 55.000 12.47 0.00 0.00 4.46
99 100 2.202703 CGCGGTTTAGAGGGGACG 60.203 66.667 0.00 0.00 0.00 4.79
100 101 2.510918 GCGGTTTAGAGGGGACGC 60.511 66.667 0.00 0.00 40.19 5.19
101 102 2.202703 CGGTTTAGAGGGGACGCG 60.203 66.667 3.53 3.53 34.13 6.01
102 103 2.510918 GGTTTAGAGGGGACGCGC 60.511 66.667 5.73 0.00 34.13 6.86
103 104 2.577593 GTTTAGAGGGGACGCGCT 59.422 61.111 5.73 0.00 34.13 5.92
104 105 1.669999 GGTTTAGAGGGGACGCGCTA 61.670 60.000 5.73 0.00 34.13 4.26
105 106 0.527169 GTTTAGAGGGGACGCGCTAC 60.527 60.000 5.73 0.00 34.13 3.58
106 107 0.682209 TTTAGAGGGGACGCGCTACT 60.682 55.000 5.73 0.00 34.13 2.57
107 108 1.381928 TTAGAGGGGACGCGCTACTG 61.382 60.000 5.73 0.00 34.13 2.74
108 109 4.874977 GAGGGGACGCGCTACTGC 62.875 72.222 5.73 0.00 0.00 4.40
110 111 3.524606 GGGGACGCGCTACTGCTA 61.525 66.667 5.73 0.00 36.97 3.49
111 112 2.728817 GGGACGCGCTACTGCTAT 59.271 61.111 5.73 0.00 36.97 2.97
112 113 1.067582 GGGACGCGCTACTGCTATT 59.932 57.895 5.73 0.00 36.97 1.73
113 114 0.529992 GGGACGCGCTACTGCTATTT 60.530 55.000 5.73 0.00 36.97 1.40
114 115 1.287425 GGACGCGCTACTGCTATTTT 58.713 50.000 5.73 0.00 36.97 1.82
115 116 1.664151 GGACGCGCTACTGCTATTTTT 59.336 47.619 5.73 0.00 36.97 1.94
132 133 3.337398 TTTTTCAGCAGCGCGTTTT 57.663 42.105 8.43 0.00 0.00 2.43
133 134 0.919981 TTTTTCAGCAGCGCGTTTTG 59.080 45.000 8.43 5.46 0.00 2.44
134 135 1.478622 TTTTCAGCAGCGCGTTTTGC 61.479 50.000 19.74 19.74 40.57 3.68
138 139 4.050719 GCAGCGCGTTTTGCTTGC 62.051 61.111 19.96 5.21 41.72 4.01
139 140 2.654724 CAGCGCGTTTTGCTTGCA 60.655 55.556 8.43 0.00 41.72 4.08
140 141 2.655044 AGCGCGTTTTGCTTGCAC 60.655 55.556 8.43 0.00 40.48 4.57
141 142 4.033481 GCGCGTTTTGCTTGCACG 62.033 61.111 8.43 0.00 43.27 5.34
144 145 4.033481 CGTTTTGCTTGCACGCGC 62.033 61.111 5.73 0.00 39.24 6.86
145 146 2.655044 GTTTTGCTTGCACGCGCT 60.655 55.556 5.73 0.00 39.64 5.92
146 147 2.654724 TTTTGCTTGCACGCGCTG 60.655 55.556 5.73 5.02 39.64 5.18
154 155 4.088762 GCACGCGCTGCTGCTAAA 62.089 61.111 21.16 0.00 43.33 1.85
155 156 2.787249 CACGCGCTGCTGCTAAAT 59.213 55.556 5.73 0.00 36.97 1.40
156 157 2.005995 CACGCGCTGCTGCTAAATA 58.994 52.632 5.73 0.00 36.97 1.40
157 158 0.042708 CACGCGCTGCTGCTAAATAG 60.043 55.000 5.73 0.00 36.97 1.73
178 179 8.737168 AATAGCAGTAGCATTGTATTTTGAGA 57.263 30.769 0.00 0.00 45.49 3.27
179 180 8.737168 ATAGCAGTAGCATTGTATTTTGAGAA 57.263 30.769 0.00 0.00 45.49 2.87
180 181 7.081526 AGCAGTAGCATTGTATTTTGAGAAG 57.918 36.000 0.00 0.00 45.49 2.85
181 182 5.741040 GCAGTAGCATTGTATTTTGAGAAGC 59.259 40.000 0.00 0.00 41.58 3.86
182 183 5.961843 CAGTAGCATTGTATTTTGAGAAGCG 59.038 40.000 0.00 0.00 0.00 4.68
183 184 3.762779 AGCATTGTATTTTGAGAAGCGC 58.237 40.909 0.00 0.00 0.00 5.92
184 185 3.441572 AGCATTGTATTTTGAGAAGCGCT 59.558 39.130 2.64 2.64 0.00 5.92
185 186 3.545078 GCATTGTATTTTGAGAAGCGCTG 59.455 43.478 12.58 0.00 0.00 5.18
186 187 2.900122 TGTATTTTGAGAAGCGCTGC 57.100 45.000 12.58 9.98 0.00 5.25
187 188 2.426522 TGTATTTTGAGAAGCGCTGCT 58.573 42.857 20.69 20.69 42.56 4.24
188 189 2.160219 TGTATTTTGAGAAGCGCTGCTG 59.840 45.455 26.35 0.00 39.62 4.41
189 190 0.524862 ATTTTGAGAAGCGCTGCTGG 59.475 50.000 26.35 0.00 39.62 4.85
190 191 0.819259 TTTTGAGAAGCGCTGCTGGT 60.819 50.000 26.35 0.00 39.62 4.00
191 192 0.034756 TTTGAGAAGCGCTGCTGGTA 59.965 50.000 26.35 6.01 39.62 3.25
192 193 0.034756 TTGAGAAGCGCTGCTGGTAA 59.965 50.000 26.35 12.42 39.62 2.85
193 194 0.390340 TGAGAAGCGCTGCTGGTAAG 60.390 55.000 26.35 0.00 39.62 2.34
194 195 0.108615 GAGAAGCGCTGCTGGTAAGA 60.109 55.000 26.35 0.00 39.62 2.10
195 196 0.539051 AGAAGCGCTGCTGGTAAGAT 59.461 50.000 19.76 0.00 39.62 2.40
196 197 1.065854 AGAAGCGCTGCTGGTAAGATT 60.066 47.619 19.76 0.00 39.62 2.40
197 198 1.328986 GAAGCGCTGCTGGTAAGATTC 59.671 52.381 12.58 0.00 39.62 2.52
198 199 0.539051 AGCGCTGCTGGTAAGATTCT 59.461 50.000 10.39 0.00 37.57 2.40
199 200 0.654683 GCGCTGCTGGTAAGATTCTG 59.345 55.000 0.00 0.00 0.00 3.02
200 201 2.009042 GCGCTGCTGGTAAGATTCTGT 61.009 52.381 0.00 0.00 0.00 3.41
201 202 1.662629 CGCTGCTGGTAAGATTCTGTG 59.337 52.381 0.00 0.00 0.00 3.66
202 203 2.704572 GCTGCTGGTAAGATTCTGTGT 58.295 47.619 0.00 0.00 0.00 3.72
203 204 3.676049 CGCTGCTGGTAAGATTCTGTGTA 60.676 47.826 0.00 0.00 0.00 2.90
204 205 4.446371 GCTGCTGGTAAGATTCTGTGTAT 58.554 43.478 0.00 0.00 0.00 2.29
205 206 5.601662 GCTGCTGGTAAGATTCTGTGTATA 58.398 41.667 0.00 0.00 0.00 1.47
206 207 6.049149 GCTGCTGGTAAGATTCTGTGTATAA 58.951 40.000 0.00 0.00 0.00 0.98
207 208 6.201806 GCTGCTGGTAAGATTCTGTGTATAAG 59.798 42.308 0.00 0.00 0.00 1.73
208 209 6.582636 TGCTGGTAAGATTCTGTGTATAAGG 58.417 40.000 0.00 0.00 0.00 2.69
209 210 6.156256 TGCTGGTAAGATTCTGTGTATAAGGT 59.844 38.462 0.00 0.00 0.00 3.50
210 211 7.048512 GCTGGTAAGATTCTGTGTATAAGGTT 58.951 38.462 0.00 0.00 0.00 3.50
211 212 7.553044 GCTGGTAAGATTCTGTGTATAAGGTTT 59.447 37.037 0.00 0.00 0.00 3.27
212 213 9.449719 CTGGTAAGATTCTGTGTATAAGGTTTT 57.550 33.333 0.00 0.00 0.00 2.43
213 214 9.802039 TGGTAAGATTCTGTGTATAAGGTTTTT 57.198 29.630 0.00 0.00 0.00 1.94
232 233 8.520351 AGGTTTTTCCTAATAGTGTTTGTATGC 58.480 33.333 0.00 0.00 46.10 3.14
233 234 7.483691 GGTTTTTCCTAATAGTGTTTGTATGCG 59.516 37.037 0.00 0.00 0.00 4.73
234 235 7.908827 TTTTCCTAATAGTGTTTGTATGCGA 57.091 32.000 0.00 0.00 0.00 5.10
235 236 7.908827 TTTCCTAATAGTGTTTGTATGCGAA 57.091 32.000 0.00 0.00 0.00 4.70
236 237 7.534085 TTCCTAATAGTGTTTGTATGCGAAG 57.466 36.000 0.00 0.00 0.00 3.79
237 238 6.046593 TCCTAATAGTGTTTGTATGCGAAGG 58.953 40.000 0.00 0.00 0.00 3.46
238 239 5.815740 CCTAATAGTGTTTGTATGCGAAGGT 59.184 40.000 0.00 0.00 0.00 3.50
239 240 5.545658 AATAGTGTTTGTATGCGAAGGTG 57.454 39.130 0.00 0.00 0.00 4.00
240 241 1.535462 AGTGTTTGTATGCGAAGGTGC 59.465 47.619 0.00 0.00 0.00 5.01
241 242 1.535462 GTGTTTGTATGCGAAGGTGCT 59.465 47.619 0.00 0.00 35.36 4.40
242 243 1.804151 TGTTTGTATGCGAAGGTGCTC 59.196 47.619 0.00 0.00 35.36 4.26
243 244 1.130561 GTTTGTATGCGAAGGTGCTCC 59.869 52.381 0.00 0.00 35.36 4.70
245 246 0.108186 TGTATGCGAAGGTGCTCCTG 60.108 55.000 8.37 0.00 44.35 3.86
246 247 0.108138 GTATGCGAAGGTGCTCCTGT 60.108 55.000 8.37 0.00 44.35 4.00
247 248 0.108186 TATGCGAAGGTGCTCCTGTG 60.108 55.000 8.37 5.17 44.35 3.66
248 249 2.031163 GCGAAGGTGCTCCTGTGT 59.969 61.111 8.37 0.00 44.35 3.72
249 250 1.292223 GCGAAGGTGCTCCTGTGTA 59.708 57.895 8.37 0.00 44.35 2.90
250 251 0.108138 GCGAAGGTGCTCCTGTGTAT 60.108 55.000 8.37 0.00 44.35 2.29
251 252 1.136305 GCGAAGGTGCTCCTGTGTATA 59.864 52.381 8.37 0.00 44.35 1.47
252 253 2.224066 GCGAAGGTGCTCCTGTGTATAT 60.224 50.000 8.37 0.00 44.35 0.86
253 254 3.384668 CGAAGGTGCTCCTGTGTATATG 58.615 50.000 8.37 0.00 44.35 1.78
254 255 3.068165 CGAAGGTGCTCCTGTGTATATGA 59.932 47.826 8.37 0.00 44.35 2.15
255 256 4.626042 GAAGGTGCTCCTGTGTATATGAG 58.374 47.826 8.37 0.00 44.35 2.90
256 257 3.647636 AGGTGCTCCTGTGTATATGAGT 58.352 45.455 6.51 0.00 43.33 3.41
257 258 4.804597 AGGTGCTCCTGTGTATATGAGTA 58.195 43.478 6.51 0.00 43.33 2.59
258 259 5.398236 AGGTGCTCCTGTGTATATGAGTAT 58.602 41.667 6.51 0.00 43.33 2.12
259 260 5.244851 AGGTGCTCCTGTGTATATGAGTATG 59.755 44.000 6.51 0.00 43.33 2.39
260 261 5.473931 GTGCTCCTGTGTATATGAGTATGG 58.526 45.833 0.00 0.00 0.00 2.74
261 262 4.021104 TGCTCCTGTGTATATGAGTATGGC 60.021 45.833 0.00 0.00 0.00 4.40
262 263 4.621747 GCTCCTGTGTATATGAGTATGGCC 60.622 50.000 0.00 0.00 0.00 5.36
263 264 3.509967 TCCTGTGTATATGAGTATGGCCG 59.490 47.826 0.00 0.00 0.00 6.13
264 265 3.258372 CCTGTGTATATGAGTATGGCCGT 59.742 47.826 1.35 1.35 0.00 5.68
265 266 4.461431 CCTGTGTATATGAGTATGGCCGTA 59.539 45.833 0.00 0.00 0.00 4.02
266 267 5.393135 CCTGTGTATATGAGTATGGCCGTAG 60.393 48.000 4.44 0.00 0.00 3.51
267 268 5.074804 TGTGTATATGAGTATGGCCGTAGT 58.925 41.667 12.37 12.37 0.00 2.73
268 269 5.537295 TGTGTATATGAGTATGGCCGTAGTT 59.463 40.000 13.70 1.14 0.00 2.24
269 270 6.041182 TGTGTATATGAGTATGGCCGTAGTTT 59.959 38.462 13.70 7.46 0.00 2.66
270 271 6.585322 GTGTATATGAGTATGGCCGTAGTTTC 59.415 42.308 13.70 8.60 0.00 2.78
271 272 6.492429 TGTATATGAGTATGGCCGTAGTTTCT 59.508 38.462 13.70 3.16 0.00 2.52
272 273 3.795623 TGAGTATGGCCGTAGTTTCTC 57.204 47.619 13.70 12.52 0.00 2.87
273 274 3.362706 TGAGTATGGCCGTAGTTTCTCT 58.637 45.455 13.70 2.03 0.00 3.10
274 275 3.380637 TGAGTATGGCCGTAGTTTCTCTC 59.619 47.826 13.70 11.53 0.00 3.20
275 276 3.633065 GAGTATGGCCGTAGTTTCTCTCT 59.367 47.826 13.70 0.54 0.00 3.10
276 277 4.024670 AGTATGGCCGTAGTTTCTCTCTT 58.975 43.478 4.44 0.00 0.00 2.85
277 278 3.983044 ATGGCCGTAGTTTCTCTCTTT 57.017 42.857 0.00 0.00 0.00 2.52
278 279 3.314541 TGGCCGTAGTTTCTCTCTTTC 57.685 47.619 0.00 0.00 0.00 2.62
279 280 2.260481 GGCCGTAGTTTCTCTCTTTCG 58.740 52.381 0.00 0.00 0.00 3.46
280 281 2.094854 GGCCGTAGTTTCTCTCTTTCGA 60.095 50.000 0.00 0.00 0.00 3.71
281 282 3.429135 GGCCGTAGTTTCTCTCTTTCGAT 60.429 47.826 0.00 0.00 0.00 3.59
282 283 3.548268 GCCGTAGTTTCTCTCTTTCGATG 59.452 47.826 0.00 0.00 0.00 3.84
283 284 4.674623 GCCGTAGTTTCTCTCTTTCGATGA 60.675 45.833 0.00 0.00 0.00 2.92
284 285 5.583495 CCGTAGTTTCTCTCTTTCGATGAT 58.417 41.667 0.00 0.00 0.00 2.45
285 286 5.457148 CCGTAGTTTCTCTCTTTCGATGATG 59.543 44.000 0.00 0.00 0.00 3.07
286 287 6.030849 CGTAGTTTCTCTCTTTCGATGATGT 58.969 40.000 0.00 0.00 0.00 3.06
287 288 6.528423 CGTAGTTTCTCTCTTTCGATGATGTT 59.472 38.462 0.00 0.00 0.00 2.71
288 289 6.718454 AGTTTCTCTCTTTCGATGATGTTG 57.282 37.500 0.00 0.00 0.00 3.33
289 290 6.226787 AGTTTCTCTCTTTCGATGATGTTGT 58.773 36.000 0.00 0.00 0.00 3.32
290 291 6.708054 AGTTTCTCTCTTTCGATGATGTTGTT 59.292 34.615 0.00 0.00 0.00 2.83
291 292 7.227512 AGTTTCTCTCTTTCGATGATGTTGTTT 59.772 33.333 0.00 0.00 0.00 2.83
292 293 6.471976 TCTCTCTTTCGATGATGTTGTTTG 57.528 37.500 0.00 0.00 0.00 2.93
293 294 5.409520 TCTCTCTTTCGATGATGTTGTTTGG 59.590 40.000 0.00 0.00 0.00 3.28
294 295 5.063204 TCTCTTTCGATGATGTTGTTTGGT 58.937 37.500 0.00 0.00 0.00 3.67
295 296 5.049474 TCTCTTTCGATGATGTTGTTTGGTG 60.049 40.000 0.00 0.00 0.00 4.17
296 297 4.819088 TCTTTCGATGATGTTGTTTGGTGA 59.181 37.500 0.00 0.00 0.00 4.02
297 298 5.473162 TCTTTCGATGATGTTGTTTGGTGAT 59.527 36.000 0.00 0.00 0.00 3.06
298 299 6.652900 TCTTTCGATGATGTTGTTTGGTGATA 59.347 34.615 0.00 0.00 0.00 2.15
299 300 6.421377 TTCGATGATGTTGTTTGGTGATAG 57.579 37.500 0.00 0.00 0.00 2.08
300 301 5.487433 TCGATGATGTTGTTTGGTGATAGT 58.513 37.500 0.00 0.00 0.00 2.12
301 302 5.351189 TCGATGATGTTGTTTGGTGATAGTG 59.649 40.000 0.00 0.00 0.00 2.74
302 303 5.351189 CGATGATGTTGTTTGGTGATAGTGA 59.649 40.000 0.00 0.00 0.00 3.41
303 304 6.128309 CGATGATGTTGTTTGGTGATAGTGAA 60.128 38.462 0.00 0.00 0.00 3.18
304 305 6.558771 TGATGTTGTTTGGTGATAGTGAAG 57.441 37.500 0.00 0.00 0.00 3.02
305 306 5.473162 TGATGTTGTTTGGTGATAGTGAAGG 59.527 40.000 0.00 0.00 0.00 3.46
306 307 3.568007 TGTTGTTTGGTGATAGTGAAGGC 59.432 43.478 0.00 0.00 0.00 4.35
307 308 2.422597 TGTTTGGTGATAGTGAAGGCG 58.577 47.619 0.00 0.00 0.00 5.52
308 309 2.037902 TGTTTGGTGATAGTGAAGGCGA 59.962 45.455 0.00 0.00 0.00 5.54
309 310 3.270877 GTTTGGTGATAGTGAAGGCGAT 58.729 45.455 0.00 0.00 0.00 4.58
310 311 2.602257 TGGTGATAGTGAAGGCGATG 57.398 50.000 0.00 0.00 0.00 3.84
311 312 2.107366 TGGTGATAGTGAAGGCGATGA 58.893 47.619 0.00 0.00 0.00 2.92
312 313 2.700371 TGGTGATAGTGAAGGCGATGAT 59.300 45.455 0.00 0.00 0.00 2.45
313 314 3.062763 GGTGATAGTGAAGGCGATGATG 58.937 50.000 0.00 0.00 0.00 3.07
314 315 3.062763 GTGATAGTGAAGGCGATGATGG 58.937 50.000 0.00 0.00 0.00 3.51
315 316 2.965147 TGATAGTGAAGGCGATGATGGA 59.035 45.455 0.00 0.00 0.00 3.41
316 317 2.890808 TAGTGAAGGCGATGATGGAC 57.109 50.000 0.00 0.00 0.00 4.02
317 318 1.198713 AGTGAAGGCGATGATGGACT 58.801 50.000 0.00 0.00 0.00 3.85
318 319 1.134580 AGTGAAGGCGATGATGGACTG 60.135 52.381 0.00 0.00 0.00 3.51
319 320 0.904649 TGAAGGCGATGATGGACTGT 59.095 50.000 0.00 0.00 0.00 3.55
320 321 1.293924 GAAGGCGATGATGGACTGTG 58.706 55.000 0.00 0.00 0.00 3.66
321 322 0.615331 AAGGCGATGATGGACTGTGT 59.385 50.000 0.00 0.00 0.00 3.72
322 323 0.615331 AGGCGATGATGGACTGTGTT 59.385 50.000 0.00 0.00 0.00 3.32
323 324 1.003580 AGGCGATGATGGACTGTGTTT 59.996 47.619 0.00 0.00 0.00 2.83
324 325 1.398390 GGCGATGATGGACTGTGTTTC 59.602 52.381 0.00 0.00 0.00 2.78
325 326 2.350522 GCGATGATGGACTGTGTTTCT 58.649 47.619 0.00 0.00 0.00 2.52
326 327 2.744202 GCGATGATGGACTGTGTTTCTT 59.256 45.455 0.00 0.00 0.00 2.52
327 328 3.181516 GCGATGATGGACTGTGTTTCTTC 60.182 47.826 0.00 0.00 0.00 2.87
328 329 3.372206 CGATGATGGACTGTGTTTCTTCC 59.628 47.826 0.00 0.00 0.00 3.46
329 330 3.855255 TGATGGACTGTGTTTCTTCCA 57.145 42.857 0.00 0.00 42.34 3.53
330 331 4.163441 TGATGGACTGTGTTTCTTCCAA 57.837 40.909 0.00 0.00 41.48 3.53
331 332 4.531854 TGATGGACTGTGTTTCTTCCAAA 58.468 39.130 0.00 0.00 41.48 3.28
332 333 4.580167 TGATGGACTGTGTTTCTTCCAAAG 59.420 41.667 0.00 0.00 41.48 2.77
333 334 3.963129 TGGACTGTGTTTCTTCCAAAGT 58.037 40.909 0.00 0.00 35.13 2.66
334 335 3.694072 TGGACTGTGTTTCTTCCAAAGTG 59.306 43.478 0.00 0.00 35.13 3.16
335 336 3.945285 GGACTGTGTTTCTTCCAAAGTGA 59.055 43.478 0.00 0.00 30.48 3.41
336 337 4.398044 GGACTGTGTTTCTTCCAAAGTGAA 59.602 41.667 0.00 0.00 30.48 3.18
337 338 5.067805 GGACTGTGTTTCTTCCAAAGTGAAT 59.932 40.000 0.00 0.00 30.48 2.57
338 339 6.405842 GGACTGTGTTTCTTCCAAAGTGAATT 60.406 38.462 0.00 0.00 30.48 2.17
339 340 6.935167 ACTGTGTTTCTTCCAAAGTGAATTT 58.065 32.000 0.00 0.00 29.17 1.82
340 341 7.035612 ACTGTGTTTCTTCCAAAGTGAATTTC 58.964 34.615 0.00 0.00 29.17 2.17
341 342 7.093771 ACTGTGTTTCTTCCAAAGTGAATTTCT 60.094 33.333 0.00 0.00 29.17 2.52
342 343 8.287439 TGTGTTTCTTCCAAAGTGAATTTCTA 57.713 30.769 0.00 0.00 0.00 2.10
343 344 8.405531 TGTGTTTCTTCCAAAGTGAATTTCTAG 58.594 33.333 0.00 0.00 0.00 2.43
344 345 8.406297 GTGTTTCTTCCAAAGTGAATTTCTAGT 58.594 33.333 0.00 0.00 0.00 2.57
345 346 8.966868 TGTTTCTTCCAAAGTGAATTTCTAGTT 58.033 29.630 0.00 0.00 0.00 2.24
346 347 9.803315 GTTTCTTCCAAAGTGAATTTCTAGTTT 57.197 29.630 0.00 0.00 0.00 2.66
412 413 5.798015 TTTTTAACACAGTACAGACGCAA 57.202 34.783 0.00 0.00 0.00 4.85
414 415 1.217882 AACACAGTACAGACGCAAGC 58.782 50.000 0.00 0.00 45.62 4.01
415 416 0.939577 ACACAGTACAGACGCAAGCG 60.940 55.000 13.50 13.50 46.03 4.68
430 431 4.711721 CGCAAGCGTTTATATGCATATGT 58.288 39.130 26.21 7.24 38.81 2.29
431 432 5.853081 CGCAAGCGTTTATATGCATATGTA 58.147 37.500 26.21 13.07 38.81 2.29
432 433 6.477742 CGCAAGCGTTTATATGCATATGTAT 58.522 36.000 26.21 11.25 38.81 2.29
433 434 7.617557 CGCAAGCGTTTATATGCATATGTATA 58.382 34.615 26.21 14.81 38.81 1.47
434 435 7.579093 CGCAAGCGTTTATATGCATATGTATAC 59.421 37.037 26.21 16.81 38.81 1.47
435 436 8.387354 GCAAGCGTTTATATGCATATGTATACA 58.613 33.333 26.21 8.27 38.81 2.29
436 437 9.689075 CAAGCGTTTATATGCATATGTATACAC 57.311 33.333 26.21 10.54 38.81 2.90
437 438 9.653287 AAGCGTTTATATGCATATGTATACACT 57.347 29.630 26.21 14.85 38.81 3.55
438 439 9.302345 AGCGTTTATATGCATATGTATACACTC 57.698 33.333 26.21 7.27 38.81 3.51
439 440 9.083080 GCGTTTATATGCATATGTATACACTCA 57.917 33.333 26.21 4.36 36.27 3.41
444 445 6.924913 ATGCATATGTATACACTCACCTCT 57.075 37.500 7.96 0.00 0.00 3.69
445 446 9.700831 ATATGCATATGTATACACTCACCTCTA 57.299 33.333 18.45 0.00 0.00 2.43
446 447 8.601047 ATGCATATGTATACACTCACCTCTAT 57.399 34.615 7.96 0.00 0.00 1.98
447 448 9.700831 ATGCATATGTATACACTCACCTCTATA 57.299 33.333 7.96 0.00 0.00 1.31
448 449 9.528489 TGCATATGTATACACTCACCTCTATAA 57.472 33.333 7.96 0.00 0.00 0.98
453 454 8.245195 TGTATACACTCACCTCTATAAATGCA 57.755 34.615 0.08 0.00 0.00 3.96
454 455 8.141909 TGTATACACTCACCTCTATAAATGCAC 58.858 37.037 0.08 0.00 0.00 4.57
455 456 5.420725 ACACTCACCTCTATAAATGCACA 57.579 39.130 0.00 0.00 0.00 4.57
456 457 5.178797 ACACTCACCTCTATAAATGCACAC 58.821 41.667 0.00 0.00 0.00 3.82
457 458 5.178061 CACTCACCTCTATAAATGCACACA 58.822 41.667 0.00 0.00 0.00 3.72
458 459 5.063944 CACTCACCTCTATAAATGCACACAC 59.936 44.000 0.00 0.00 0.00 3.82
459 460 4.180817 TCACCTCTATAAATGCACACACG 58.819 43.478 0.00 0.00 0.00 4.49
460 461 2.936498 ACCTCTATAAATGCACACACGC 59.064 45.455 0.00 0.00 0.00 5.34
462 463 3.242413 CCTCTATAAATGCACACACGCAC 60.242 47.826 0.00 0.00 46.56 5.34
463 464 3.330267 TCTATAAATGCACACACGCACA 58.670 40.909 0.00 0.00 46.56 4.57
464 465 3.938334 TCTATAAATGCACACACGCACAT 59.062 39.130 0.00 0.00 46.56 3.21
465 466 2.610219 TAAATGCACACACGCACATC 57.390 45.000 0.00 0.00 46.56 3.06
466 467 0.953727 AAATGCACACACGCACATCT 59.046 45.000 0.00 0.00 46.56 2.90
467 468 0.953727 AATGCACACACGCACATCTT 59.046 45.000 0.00 0.00 46.56 2.40
468 469 1.807139 ATGCACACACGCACATCTTA 58.193 45.000 0.00 0.00 46.56 2.10
469 470 1.807139 TGCACACACGCACATCTTAT 58.193 45.000 0.00 0.00 36.86 1.73
470 471 1.731709 TGCACACACGCACATCTTATC 59.268 47.619 0.00 0.00 36.86 1.75
471 472 2.002586 GCACACACGCACATCTTATCT 58.997 47.619 0.00 0.00 0.00 1.98
472 473 2.029728 GCACACACGCACATCTTATCTC 59.970 50.000 0.00 0.00 0.00 2.75
473 474 3.515630 CACACACGCACATCTTATCTCT 58.484 45.455 0.00 0.00 0.00 3.10
474 475 4.672409 CACACACGCACATCTTATCTCTA 58.328 43.478 0.00 0.00 0.00 2.43
475 476 4.500837 CACACACGCACATCTTATCTCTAC 59.499 45.833 0.00 0.00 0.00 2.59
476 477 3.726235 CACACGCACATCTTATCTCTACG 59.274 47.826 0.00 0.00 0.00 3.51
477 478 3.626217 ACACGCACATCTTATCTCTACGA 59.374 43.478 0.00 0.00 0.00 3.43
478 479 4.215201 CACGCACATCTTATCTCTACGAG 58.785 47.826 0.00 0.00 0.00 4.18
479 480 3.230355 CGCACATCTTATCTCTACGAGC 58.770 50.000 0.00 0.00 0.00 5.03
480 481 3.304057 CGCACATCTTATCTCTACGAGCA 60.304 47.826 0.00 0.00 0.00 4.26
481 482 3.978217 GCACATCTTATCTCTACGAGCAC 59.022 47.826 0.00 0.00 0.00 4.40
482 483 4.541779 CACATCTTATCTCTACGAGCACC 58.458 47.826 0.00 0.00 0.00 5.01
483 484 4.277174 CACATCTTATCTCTACGAGCACCT 59.723 45.833 0.00 0.00 0.00 4.00
484 485 4.517453 ACATCTTATCTCTACGAGCACCTC 59.483 45.833 0.00 0.00 0.00 3.85
485 486 3.478509 TCTTATCTCTACGAGCACCTCC 58.521 50.000 0.00 0.00 0.00 4.30
486 487 1.880271 TATCTCTACGAGCACCTCCG 58.120 55.000 0.00 0.00 0.00 4.63
487 488 0.180642 ATCTCTACGAGCACCTCCGA 59.819 55.000 0.00 0.00 0.00 4.55
488 489 0.035725 TCTCTACGAGCACCTCCGAA 60.036 55.000 0.00 0.00 0.00 4.30
489 490 0.809385 CTCTACGAGCACCTCCGAAA 59.191 55.000 0.00 0.00 0.00 3.46
490 491 1.201647 CTCTACGAGCACCTCCGAAAA 59.798 52.381 0.00 0.00 0.00 2.29
491 492 1.201647 TCTACGAGCACCTCCGAAAAG 59.798 52.381 0.00 0.00 0.00 2.27
492 493 1.201647 CTACGAGCACCTCCGAAAAGA 59.798 52.381 0.00 0.00 0.00 2.52
493 494 0.319641 ACGAGCACCTCCGAAAAGAC 60.320 55.000 0.00 0.00 0.00 3.01
494 495 0.038159 CGAGCACCTCCGAAAAGACT 60.038 55.000 0.00 0.00 0.00 3.24
495 496 1.433534 GAGCACCTCCGAAAAGACTG 58.566 55.000 0.00 0.00 0.00 3.51
496 497 1.000955 GAGCACCTCCGAAAAGACTGA 59.999 52.381 0.00 0.00 0.00 3.41
497 498 1.001406 AGCACCTCCGAAAAGACTGAG 59.999 52.381 0.00 0.00 0.00 3.35
498 499 1.270358 GCACCTCCGAAAAGACTGAGT 60.270 52.381 0.00 0.00 0.00 3.41
499 500 2.678324 CACCTCCGAAAAGACTGAGTC 58.322 52.381 3.98 3.98 0.00 3.36
500 501 1.269998 ACCTCCGAAAAGACTGAGTCG 59.730 52.381 6.99 0.00 37.67 4.18
502 503 2.446341 CCGAAAAGACTGAGTCGGC 58.554 57.895 6.99 0.00 45.74 5.54
503 504 0.319555 CCGAAAAGACTGAGTCGGCA 60.320 55.000 6.99 0.00 45.74 5.69
504 505 0.784778 CGAAAAGACTGAGTCGGCAC 59.215 55.000 6.99 0.44 37.67 5.01
505 506 1.865865 GAAAAGACTGAGTCGGCACA 58.134 50.000 6.99 0.00 37.67 4.57
506 507 2.417719 GAAAAGACTGAGTCGGCACAT 58.582 47.619 6.99 0.00 37.67 3.21
507 508 2.086054 AAAGACTGAGTCGGCACATC 57.914 50.000 6.99 0.00 37.67 3.06
508 509 0.969149 AAGACTGAGTCGGCACATCA 59.031 50.000 6.99 0.00 37.67 3.07
509 510 1.189752 AGACTGAGTCGGCACATCAT 58.810 50.000 6.99 0.00 37.67 2.45
510 511 1.135915 AGACTGAGTCGGCACATCATC 59.864 52.381 6.99 0.00 37.67 2.92
511 512 1.135915 GACTGAGTCGGCACATCATCT 59.864 52.381 0.00 0.00 0.00 2.90
512 513 1.552337 ACTGAGTCGGCACATCATCTT 59.448 47.619 0.00 0.00 0.00 2.40
513 514 1.931841 CTGAGTCGGCACATCATCTTG 59.068 52.381 0.00 0.00 0.00 3.02
514 515 1.550072 TGAGTCGGCACATCATCTTGA 59.450 47.619 0.00 0.00 0.00 3.02
515 516 2.028203 TGAGTCGGCACATCATCTTGAA 60.028 45.455 0.00 0.00 0.00 2.69
516 517 3.002791 GAGTCGGCACATCATCTTGAAA 58.997 45.455 0.00 0.00 0.00 2.69
517 518 3.614092 AGTCGGCACATCATCTTGAAAT 58.386 40.909 0.00 0.00 0.00 2.17
518 519 4.012374 AGTCGGCACATCATCTTGAAATT 58.988 39.130 0.00 0.00 0.00 1.82
519 520 4.460382 AGTCGGCACATCATCTTGAAATTT 59.540 37.500 0.00 0.00 0.00 1.82
520 521 5.647658 AGTCGGCACATCATCTTGAAATTTA 59.352 36.000 0.00 0.00 0.00 1.40
521 522 6.319658 AGTCGGCACATCATCTTGAAATTTAT 59.680 34.615 0.00 0.00 0.00 1.40
522 523 6.415867 GTCGGCACATCATCTTGAAATTTATG 59.584 38.462 0.00 0.00 0.00 1.90
523 524 6.318396 TCGGCACATCATCTTGAAATTTATGA 59.682 34.615 4.30 4.30 33.20 2.15
524 525 6.974048 CGGCACATCATCTTGAAATTTATGAA 59.026 34.615 5.66 0.00 32.47 2.57
525 526 7.166970 CGGCACATCATCTTGAAATTTATGAAG 59.833 37.037 5.66 4.52 32.47 3.02
526 527 8.192774 GGCACATCATCTTGAAATTTATGAAGA 58.807 33.333 9.66 9.06 32.47 2.87
527 528 9.745880 GCACATCATCTTGAAATTTATGAAGAT 57.254 29.630 9.66 10.51 35.91 2.40
564 565 9.961264 ATCTACGTATAGATGTTATCCTCAAGA 57.039 33.333 0.00 0.00 44.94 3.02
565 566 9.788889 TCTACGTATAGATGTTATCCTCAAGAA 57.211 33.333 0.00 0.00 32.16 2.52
582 583 9.529325 TCCTCAAGAAAAATCTATGTATGTACG 57.471 33.333 0.00 0.00 0.00 3.67
583 584 8.276325 CCTCAAGAAAAATCTATGTATGTACGC 58.724 37.037 0.00 0.00 0.00 4.42
584 585 8.942338 TCAAGAAAAATCTATGTATGTACGCT 57.058 30.769 0.00 0.00 0.00 5.07
585 586 9.378551 TCAAGAAAAATCTATGTATGTACGCTT 57.621 29.630 0.00 0.00 0.00 4.68
586 587 9.988350 CAAGAAAAATCTATGTATGTACGCTTT 57.012 29.630 0.00 0.00 0.00 3.51
624 625 6.146898 GTGCATACTGTTTGTAATCCGTTTT 58.853 36.000 0.00 0.00 34.45 2.43
627 628 7.081976 GCATACTGTTTGTAATCCGTTTTTCT 58.918 34.615 0.40 0.00 34.45 2.52
633 634 9.769093 CTGTTTGTAATCCGTTTTTCTAATAGG 57.231 33.333 0.00 0.00 0.00 2.57
634 635 9.287373 TGTTTGTAATCCGTTTTTCTAATAGGT 57.713 29.630 0.00 0.00 0.00 3.08
649 651 6.558498 TCTAATAGGTAGTTATGCCTGGCTA 58.442 40.000 21.03 6.76 42.26 3.93
658 660 2.366435 GCCTGGCTACCCACCCTA 60.366 66.667 12.43 0.00 35.79 3.53
666 668 0.108329 CTACCCACCCTACAACTGCG 60.108 60.000 0.00 0.00 0.00 5.18
668 670 2.746277 CCACCCTACAACTGCGCC 60.746 66.667 4.18 0.00 0.00 6.53
669 671 2.031919 CACCCTACAACTGCGCCA 59.968 61.111 4.18 0.00 0.00 5.69
670 672 2.032071 ACCCTACAACTGCGCCAC 59.968 61.111 4.18 0.00 0.00 5.01
671 673 2.031919 CCCTACAACTGCGCCACA 59.968 61.111 4.18 0.00 0.00 4.17
672 674 1.377202 CCCTACAACTGCGCCACAT 60.377 57.895 4.18 0.00 0.00 3.21
673 675 1.647545 CCCTACAACTGCGCCACATG 61.648 60.000 4.18 0.95 0.00 3.21
674 676 0.673333 CCTACAACTGCGCCACATGA 60.673 55.000 4.18 0.00 0.00 3.07
675 677 0.723414 CTACAACTGCGCCACATGAG 59.277 55.000 4.18 0.00 0.00 2.90
676 678 0.320050 TACAACTGCGCCACATGAGA 59.680 50.000 4.18 0.00 0.00 3.27
677 679 1.230635 ACAACTGCGCCACATGAGAC 61.231 55.000 4.18 0.00 0.00 3.36
678 680 2.029288 AACTGCGCCACATGAGACG 61.029 57.895 4.18 0.00 0.00 4.18
679 681 2.433145 CTGCGCCACATGAGACGT 60.433 61.111 4.18 0.00 0.00 4.34
680 682 2.733671 CTGCGCCACATGAGACGTG 61.734 63.158 4.18 0.00 0.00 4.49
681 683 2.738521 GCGCCACATGAGACGTGT 60.739 61.111 0.00 0.00 32.26 4.49
682 684 2.317609 GCGCCACATGAGACGTGTT 61.318 57.895 0.00 0.00 32.26 3.32
683 685 1.011968 GCGCCACATGAGACGTGTTA 61.012 55.000 0.00 0.00 32.26 2.41
684 686 1.640428 CGCCACATGAGACGTGTTAT 58.360 50.000 0.00 0.00 32.26 1.89
685 687 1.588404 CGCCACATGAGACGTGTTATC 59.412 52.381 0.00 0.00 32.26 1.75
778 783 2.652095 GGCACACGGTACAGGGCTA 61.652 63.158 0.00 0.00 32.77 3.93
779 784 1.153628 GCACACGGTACAGGGCTAG 60.154 63.158 0.00 0.00 29.41 3.42
780 785 1.601419 GCACACGGTACAGGGCTAGA 61.601 60.000 0.00 0.00 29.41 2.43
940 969 0.108424 CCAAGAAGCTCACTCCTCCG 60.108 60.000 0.00 0.00 0.00 4.63
982 1011 0.383231 CATCCTTGATTCCTTGCCGC 59.617 55.000 0.00 0.00 0.00 6.53
1011 1040 1.264749 CCCGTCAGATGGACCCTGAA 61.265 60.000 10.65 0.00 43.95 3.02
1239 1274 1.776667 CCCATCATGGTGTACCTCCAT 59.223 52.381 5.00 12.16 45.29 3.41
1620 1655 4.838486 GACGGCGAGACGGAGCAG 62.838 72.222 16.62 0.00 38.39 4.24
1861 1896 1.290324 GTTGAGCTGCTCGACTCCA 59.710 57.895 32.90 11.87 40.63 3.86
1982 2017 0.171455 CAGTAGACCAGACGTCAGGC 59.829 60.000 25.38 17.75 44.66 4.85
1988 2023 4.363990 CAGACGTCAGGCGCTGGT 62.364 66.667 19.50 0.00 46.11 4.00
1996 2031 0.611062 TCAGGCGCTGGTACTAGTGT 60.611 55.000 19.41 0.00 31.51 3.55
2029 2064 7.605691 TGTTGTACTAGTACTCTGTTCTACTCC 59.394 40.741 28.56 3.05 37.00 3.85
2160 2195 4.095782 ACGTGTGAGCAAAACAACTAATGT 59.904 37.500 0.00 0.00 46.82 2.71
2177 2212 8.745837 CAACTAATGTTCACACACATCTTTTTC 58.254 33.333 0.00 0.00 36.30 2.29
2199 2235 0.969894 CTTCCGAACCCTCTCACACT 59.030 55.000 0.00 0.00 0.00 3.55
2236 2274 0.034574 TTGATAATGCCCACACGCCT 60.035 50.000 0.00 0.00 0.00 5.52
2611 2649 1.152589 TGCACATTGGGGCAGTTGA 60.153 52.632 1.67 0.00 34.58 3.18
2681 2719 0.677288 TGCTTACGTGCACACTAGGT 59.323 50.000 18.64 8.61 38.12 3.08
2695 2733 4.214971 CACACTAGGTAGTTGTCGTGTACT 59.785 45.833 0.00 0.00 34.23 2.73
2723 2761 0.398696 ACACATGGCAACTCGGGTAA 59.601 50.000 0.00 0.00 37.61 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.304559 CCTATAATGAATCGCGCTACTGC 59.695 47.826 5.56 0.00 0.00 4.40
7 8 3.859961 CCCTATAATGAATCGCGCTACTG 59.140 47.826 5.56 0.00 0.00 2.74
8 9 3.676324 GCCCTATAATGAATCGCGCTACT 60.676 47.826 5.56 0.00 0.00 2.57
9 10 2.603560 GCCCTATAATGAATCGCGCTAC 59.396 50.000 5.56 0.00 0.00 3.58
10 11 2.734175 CGCCCTATAATGAATCGCGCTA 60.734 50.000 5.56 0.00 0.00 4.26
11 12 1.726853 GCCCTATAATGAATCGCGCT 58.273 50.000 5.56 0.00 0.00 5.92
12 13 0.370273 CGCCCTATAATGAATCGCGC 59.630 55.000 0.00 0.00 0.00 6.86
13 14 0.370273 GCGCCCTATAATGAATCGCG 59.630 55.000 0.00 0.00 40.97 5.87
14 15 1.726853 AGCGCCCTATAATGAATCGC 58.273 50.000 2.29 0.00 41.16 4.58
15 16 3.859961 CAGTAGCGCCCTATAATGAATCG 59.140 47.826 2.29 0.00 0.00 3.34
16 17 3.619038 GCAGTAGCGCCCTATAATGAATC 59.381 47.826 2.29 0.00 0.00 2.52
17 18 3.600388 GCAGTAGCGCCCTATAATGAAT 58.400 45.455 2.29 0.00 0.00 2.57
18 19 3.040147 GCAGTAGCGCCCTATAATGAA 57.960 47.619 2.29 0.00 0.00 2.57
19 20 2.743636 GCAGTAGCGCCCTATAATGA 57.256 50.000 2.29 0.00 0.00 2.57
38 39 1.878088 TCGCCGTCCAGCTAGTTATAG 59.122 52.381 0.00 0.00 0.00 1.31
39 40 1.878088 CTCGCCGTCCAGCTAGTTATA 59.122 52.381 0.00 0.00 0.00 0.98
40 41 0.669077 CTCGCCGTCCAGCTAGTTAT 59.331 55.000 0.00 0.00 0.00 1.89
41 42 1.381928 CCTCGCCGTCCAGCTAGTTA 61.382 60.000 0.00 0.00 0.00 2.24
42 43 2.711922 CCTCGCCGTCCAGCTAGTT 61.712 63.158 0.00 0.00 0.00 2.24
43 44 3.141488 CCTCGCCGTCCAGCTAGT 61.141 66.667 0.00 0.00 0.00 2.57
44 45 3.127352 GACCTCGCCGTCCAGCTAG 62.127 68.421 0.00 0.00 0.00 3.42
45 46 3.138798 GACCTCGCCGTCCAGCTA 61.139 66.667 0.00 0.00 0.00 3.32
47 48 4.148825 ATGACCTCGCCGTCCAGC 62.149 66.667 0.07 0.00 31.35 4.85
48 49 2.202797 CATGACCTCGCCGTCCAG 60.203 66.667 0.00 0.00 31.35 3.86
49 50 3.770040 CCATGACCTCGCCGTCCA 61.770 66.667 0.00 0.00 31.35 4.02
51 52 3.950794 TTGCCATGACCTCGCCGTC 62.951 63.158 0.00 0.00 0.00 4.79
52 53 2.819984 AATTGCCATGACCTCGCCGT 62.820 55.000 0.00 0.00 0.00 5.68
53 54 0.813610 TAATTGCCATGACCTCGCCG 60.814 55.000 0.00 0.00 0.00 6.46
54 55 0.947244 CTAATTGCCATGACCTCGCC 59.053 55.000 0.00 0.00 0.00 5.54
55 56 1.869767 CTCTAATTGCCATGACCTCGC 59.130 52.381 0.00 0.00 0.00 5.03
56 57 1.869767 GCTCTAATTGCCATGACCTCG 59.130 52.381 0.00 0.00 0.00 4.63
57 58 2.877168 CTGCTCTAATTGCCATGACCTC 59.123 50.000 0.00 0.00 0.00 3.85
58 59 2.240667 ACTGCTCTAATTGCCATGACCT 59.759 45.455 0.00 0.00 0.00 3.85
59 60 2.648059 ACTGCTCTAATTGCCATGACC 58.352 47.619 0.00 0.00 0.00 4.02
60 61 4.260375 CGTTACTGCTCTAATTGCCATGAC 60.260 45.833 0.00 0.00 0.00 3.06
61 62 3.871006 CGTTACTGCTCTAATTGCCATGA 59.129 43.478 0.00 0.00 0.00 3.07
62 63 3.546815 GCGTTACTGCTCTAATTGCCATG 60.547 47.826 0.00 0.00 0.00 3.66
63 64 2.614057 GCGTTACTGCTCTAATTGCCAT 59.386 45.455 0.00 0.00 0.00 4.40
64 65 2.006888 GCGTTACTGCTCTAATTGCCA 58.993 47.619 0.00 0.00 0.00 4.92
65 66 1.004927 CGCGTTACTGCTCTAATTGCC 60.005 52.381 0.00 0.00 0.00 4.52
66 67 1.004927 CCGCGTTACTGCTCTAATTGC 60.005 52.381 4.92 0.00 0.00 3.56
67 68 2.268298 ACCGCGTTACTGCTCTAATTG 58.732 47.619 4.92 0.00 0.00 2.32
68 69 2.667473 ACCGCGTTACTGCTCTAATT 57.333 45.000 4.92 0.00 0.00 1.40
69 70 2.667473 AACCGCGTTACTGCTCTAAT 57.333 45.000 4.92 0.00 0.00 1.73
70 71 2.443887 AAACCGCGTTACTGCTCTAA 57.556 45.000 4.92 0.00 0.00 2.10
71 72 2.749076 TCTAAACCGCGTTACTGCTCTA 59.251 45.455 4.92 0.00 0.00 2.43
72 73 1.542915 TCTAAACCGCGTTACTGCTCT 59.457 47.619 4.92 0.00 0.00 4.09
73 74 1.918609 CTCTAAACCGCGTTACTGCTC 59.081 52.381 4.92 0.00 0.00 4.26
74 75 1.403780 CCTCTAAACCGCGTTACTGCT 60.404 52.381 4.92 0.00 0.00 4.24
75 76 0.997196 CCTCTAAACCGCGTTACTGC 59.003 55.000 4.92 0.00 0.00 4.40
76 77 1.636988 CCCTCTAAACCGCGTTACTG 58.363 55.000 4.92 0.00 0.00 2.74
77 78 0.533951 CCCCTCTAAACCGCGTTACT 59.466 55.000 4.92 0.00 0.00 2.24
78 79 0.532115 TCCCCTCTAAACCGCGTTAC 59.468 55.000 4.92 0.00 0.00 2.50
79 80 0.532115 GTCCCCTCTAAACCGCGTTA 59.468 55.000 4.92 0.00 0.00 3.18
80 81 1.294459 GTCCCCTCTAAACCGCGTT 59.706 57.895 4.92 0.00 0.00 4.84
81 82 2.976356 GTCCCCTCTAAACCGCGT 59.024 61.111 4.92 0.00 0.00 6.01
82 83 2.202703 CGTCCCCTCTAAACCGCG 60.203 66.667 0.00 0.00 0.00 6.46
83 84 2.510918 GCGTCCCCTCTAAACCGC 60.511 66.667 0.00 0.00 0.00 5.68
84 85 2.202703 CGCGTCCCCTCTAAACCG 60.203 66.667 0.00 0.00 0.00 4.44
85 86 1.669999 TAGCGCGTCCCCTCTAAACC 61.670 60.000 8.43 0.00 0.00 3.27
86 87 0.527169 GTAGCGCGTCCCCTCTAAAC 60.527 60.000 8.43 0.00 0.00 2.01
87 88 0.682209 AGTAGCGCGTCCCCTCTAAA 60.682 55.000 8.43 0.00 0.00 1.85
88 89 1.077212 AGTAGCGCGTCCCCTCTAA 60.077 57.895 8.43 0.00 0.00 2.10
89 90 1.822613 CAGTAGCGCGTCCCCTCTA 60.823 63.158 8.43 0.00 0.00 2.43
90 91 3.141488 CAGTAGCGCGTCCCCTCT 61.141 66.667 8.43 0.00 0.00 3.69
91 92 4.874977 GCAGTAGCGCGTCCCCTC 62.875 72.222 8.43 0.00 0.00 4.30
114 115 0.919981 CAAAACGCGCTGCTGAAAAA 59.080 45.000 5.73 0.00 0.00 1.94
115 116 1.478622 GCAAAACGCGCTGCTGAAAA 61.479 50.000 18.06 0.00 35.62 2.29
116 117 1.943693 GCAAAACGCGCTGCTGAAA 60.944 52.632 18.06 0.00 35.62 2.69
117 118 2.353376 GCAAAACGCGCTGCTGAA 60.353 55.556 18.06 0.00 35.62 3.02
118 119 3.279116 AGCAAAACGCGCTGCTGA 61.279 55.556 24.71 0.00 46.97 4.26
127 128 4.033481 GCGCGTGCAAGCAAAACG 62.033 61.111 24.18 8.64 42.15 3.60
128 129 2.655044 AGCGCGTGCAAGCAAAAC 60.655 55.556 24.79 10.21 46.23 2.43
129 130 2.654724 CAGCGCGTGCAAGCAAAA 60.655 55.556 24.79 0.00 46.23 2.44
152 153 9.177608 TCTCAAAATACAATGCTACTGCTATTT 57.822 29.630 0.00 0.00 40.48 1.40
153 154 8.737168 TCTCAAAATACAATGCTACTGCTATT 57.263 30.769 0.00 0.00 40.48 1.73
154 155 8.737168 TTCTCAAAATACAATGCTACTGCTAT 57.263 30.769 0.00 0.00 40.48 2.97
155 156 7.201644 GCTTCTCAAAATACAATGCTACTGCTA 60.202 37.037 0.00 0.00 40.48 3.49
156 157 6.404074 GCTTCTCAAAATACAATGCTACTGCT 60.404 38.462 0.00 0.00 40.48 4.24
157 158 5.741040 GCTTCTCAAAATACAATGCTACTGC 59.259 40.000 0.00 0.00 40.20 4.40
158 159 5.961843 CGCTTCTCAAAATACAATGCTACTG 59.038 40.000 0.00 0.00 0.00 2.74
159 160 5.447818 GCGCTTCTCAAAATACAATGCTACT 60.448 40.000 0.00 0.00 0.00 2.57
160 161 4.730521 GCGCTTCTCAAAATACAATGCTAC 59.269 41.667 0.00 0.00 0.00 3.58
161 162 4.635765 AGCGCTTCTCAAAATACAATGCTA 59.364 37.500 2.64 0.00 0.00 3.49
162 163 3.441572 AGCGCTTCTCAAAATACAATGCT 59.558 39.130 2.64 0.00 0.00 3.79
163 164 3.545078 CAGCGCTTCTCAAAATACAATGC 59.455 43.478 7.50 0.00 0.00 3.56
164 165 3.545078 GCAGCGCTTCTCAAAATACAATG 59.455 43.478 7.50 0.00 0.00 2.82
165 166 3.441572 AGCAGCGCTTCTCAAAATACAAT 59.558 39.130 7.50 0.00 33.89 2.71
166 167 2.813754 AGCAGCGCTTCTCAAAATACAA 59.186 40.909 7.50 0.00 33.89 2.41
167 168 2.160219 CAGCAGCGCTTCTCAAAATACA 59.840 45.455 7.50 0.00 36.40 2.29
168 169 2.476854 CCAGCAGCGCTTCTCAAAATAC 60.477 50.000 7.50 0.00 36.40 1.89
169 170 1.739466 CCAGCAGCGCTTCTCAAAATA 59.261 47.619 7.50 0.00 36.40 1.40
170 171 0.524862 CCAGCAGCGCTTCTCAAAAT 59.475 50.000 7.50 0.00 36.40 1.82
171 172 0.819259 ACCAGCAGCGCTTCTCAAAA 60.819 50.000 7.50 0.00 36.40 2.44
172 173 0.034756 TACCAGCAGCGCTTCTCAAA 59.965 50.000 7.50 0.00 36.40 2.69
173 174 0.034756 TTACCAGCAGCGCTTCTCAA 59.965 50.000 7.50 0.00 36.40 3.02
174 175 0.390340 CTTACCAGCAGCGCTTCTCA 60.390 55.000 7.50 0.00 36.40 3.27
175 176 0.108615 TCTTACCAGCAGCGCTTCTC 60.109 55.000 7.50 0.00 36.40 2.87
176 177 0.539051 ATCTTACCAGCAGCGCTTCT 59.461 50.000 7.50 4.99 36.40 2.85
177 178 1.328986 GAATCTTACCAGCAGCGCTTC 59.671 52.381 7.50 1.45 36.40 3.86
178 179 1.065854 AGAATCTTACCAGCAGCGCTT 60.066 47.619 7.50 0.00 36.40 4.68
179 180 0.539051 AGAATCTTACCAGCAGCGCT 59.461 50.000 2.64 2.64 40.77 5.92
180 181 0.654683 CAGAATCTTACCAGCAGCGC 59.345 55.000 0.00 0.00 0.00 5.92
181 182 1.662629 CACAGAATCTTACCAGCAGCG 59.337 52.381 0.00 0.00 0.00 5.18
182 183 2.704572 ACACAGAATCTTACCAGCAGC 58.295 47.619 0.00 0.00 0.00 5.25
183 184 6.703607 CCTTATACACAGAATCTTACCAGCAG 59.296 42.308 0.00 0.00 0.00 4.24
184 185 6.156256 ACCTTATACACAGAATCTTACCAGCA 59.844 38.462 0.00 0.00 0.00 4.41
185 186 6.583562 ACCTTATACACAGAATCTTACCAGC 58.416 40.000 0.00 0.00 0.00 4.85
186 187 9.449719 AAAACCTTATACACAGAATCTTACCAG 57.550 33.333 0.00 0.00 0.00 4.00
187 188 9.802039 AAAAACCTTATACACAGAATCTTACCA 57.198 29.630 0.00 0.00 0.00 3.25
207 208 7.483691 CGCATACAAACACTATTAGGAAAAACC 59.516 37.037 0.00 0.00 39.35 3.27
208 209 8.231837 TCGCATACAAACACTATTAGGAAAAAC 58.768 33.333 0.00 0.00 0.00 2.43
209 210 8.325421 TCGCATACAAACACTATTAGGAAAAA 57.675 30.769 0.00 0.00 0.00 1.94
210 211 7.908827 TCGCATACAAACACTATTAGGAAAA 57.091 32.000 0.00 0.00 0.00 2.29
211 212 7.065324 CCTTCGCATACAAACACTATTAGGAAA 59.935 37.037 0.00 0.00 0.00 3.13
212 213 6.537301 CCTTCGCATACAAACACTATTAGGAA 59.463 38.462 0.00 0.00 0.00 3.36
213 214 6.046593 CCTTCGCATACAAACACTATTAGGA 58.953 40.000 0.00 0.00 0.00 2.94
214 215 5.815740 ACCTTCGCATACAAACACTATTAGG 59.184 40.000 0.00 0.00 0.00 2.69
215 216 6.705782 CACCTTCGCATACAAACACTATTAG 58.294 40.000 0.00 0.00 0.00 1.73
216 217 5.064198 GCACCTTCGCATACAAACACTATTA 59.936 40.000 0.00 0.00 0.00 0.98
217 218 4.142687 GCACCTTCGCATACAAACACTATT 60.143 41.667 0.00 0.00 0.00 1.73
218 219 3.374058 GCACCTTCGCATACAAACACTAT 59.626 43.478 0.00 0.00 0.00 2.12
219 220 2.739913 GCACCTTCGCATACAAACACTA 59.260 45.455 0.00 0.00 0.00 2.74
220 221 1.535462 GCACCTTCGCATACAAACACT 59.465 47.619 0.00 0.00 0.00 3.55
221 222 1.535462 AGCACCTTCGCATACAAACAC 59.465 47.619 0.00 0.00 0.00 3.32
222 223 1.804151 GAGCACCTTCGCATACAAACA 59.196 47.619 0.00 0.00 0.00 2.83
223 224 1.130561 GGAGCACCTTCGCATACAAAC 59.869 52.381 0.00 0.00 0.00 2.93
224 225 1.003118 AGGAGCACCTTCGCATACAAA 59.997 47.619 0.00 0.00 45.36 2.83
225 226 0.613260 AGGAGCACCTTCGCATACAA 59.387 50.000 0.00 0.00 45.36 2.41
226 227 0.108186 CAGGAGCACCTTCGCATACA 60.108 55.000 0.00 0.00 45.36 2.29
227 228 0.108138 ACAGGAGCACCTTCGCATAC 60.108 55.000 0.00 0.00 45.36 2.39
228 229 0.108186 CACAGGAGCACCTTCGCATA 60.108 55.000 0.00 0.00 45.36 3.14
229 230 1.376424 CACAGGAGCACCTTCGCAT 60.376 57.895 0.00 0.00 45.36 4.73
230 231 1.468506 TACACAGGAGCACCTTCGCA 61.469 55.000 0.00 0.00 45.36 5.10
231 232 0.108138 ATACACAGGAGCACCTTCGC 60.108 55.000 0.00 0.00 45.36 4.70
232 233 3.068165 TCATATACACAGGAGCACCTTCG 59.932 47.826 0.00 0.00 45.36 3.79
233 234 4.100189 ACTCATATACACAGGAGCACCTTC 59.900 45.833 0.00 0.00 45.36 3.46
234 235 4.033709 ACTCATATACACAGGAGCACCTT 58.966 43.478 0.00 0.00 45.36 3.50
236 237 5.473931 CATACTCATATACACAGGAGCACC 58.526 45.833 0.00 0.00 0.00 5.01
237 238 5.473931 CCATACTCATATACACAGGAGCAC 58.526 45.833 0.00 0.00 0.00 4.40
238 239 4.021104 GCCATACTCATATACACAGGAGCA 60.021 45.833 0.00 0.00 0.00 4.26
239 240 4.499183 GCCATACTCATATACACAGGAGC 58.501 47.826 0.00 0.00 0.00 4.70
240 241 4.380973 CGGCCATACTCATATACACAGGAG 60.381 50.000 2.24 0.00 0.00 3.69
241 242 3.509967 CGGCCATACTCATATACACAGGA 59.490 47.826 2.24 0.00 0.00 3.86
242 243 3.258372 ACGGCCATACTCATATACACAGG 59.742 47.826 2.24 0.00 0.00 4.00
243 244 4.521130 ACGGCCATACTCATATACACAG 57.479 45.455 2.24 0.00 0.00 3.66
244 245 5.074804 ACTACGGCCATACTCATATACACA 58.925 41.667 2.24 0.00 0.00 3.72
245 246 5.640189 ACTACGGCCATACTCATATACAC 57.360 43.478 2.24 0.00 0.00 2.90
246 247 6.492429 AGAAACTACGGCCATACTCATATACA 59.508 38.462 2.24 0.00 0.00 2.29
247 248 6.921914 AGAAACTACGGCCATACTCATATAC 58.078 40.000 2.24 0.00 0.00 1.47
248 249 6.946583 AGAGAAACTACGGCCATACTCATATA 59.053 38.462 2.24 0.00 0.00 0.86
249 250 5.775701 AGAGAAACTACGGCCATACTCATAT 59.224 40.000 2.24 0.00 0.00 1.78
250 251 5.138276 AGAGAAACTACGGCCATACTCATA 58.862 41.667 2.24 0.00 0.00 2.15
251 252 3.961408 AGAGAAACTACGGCCATACTCAT 59.039 43.478 2.24 0.00 0.00 2.90
252 253 3.362706 AGAGAAACTACGGCCATACTCA 58.637 45.455 2.24 0.00 0.00 3.41
253 254 3.633065 AGAGAGAAACTACGGCCATACTC 59.367 47.826 2.24 0.00 0.00 2.59
254 255 3.633418 AGAGAGAAACTACGGCCATACT 58.367 45.455 2.24 0.00 0.00 2.12
255 256 4.388378 AAGAGAGAAACTACGGCCATAC 57.612 45.455 2.24 0.00 0.00 2.39
256 257 4.439700 CGAAAGAGAGAAACTACGGCCATA 60.440 45.833 2.24 0.00 0.00 2.74
257 258 3.676324 CGAAAGAGAGAAACTACGGCCAT 60.676 47.826 2.24 0.00 0.00 4.40
258 259 2.352421 CGAAAGAGAGAAACTACGGCCA 60.352 50.000 2.24 0.00 0.00 5.36
259 260 2.094854 TCGAAAGAGAGAAACTACGGCC 60.095 50.000 0.00 0.00 34.84 6.13
260 261 3.213249 TCGAAAGAGAGAAACTACGGC 57.787 47.619 0.00 0.00 34.84 5.68
274 275 5.107109 TCACCAAACAACATCATCGAAAG 57.893 39.130 0.00 0.00 0.00 2.62
275 276 5.703978 ATCACCAAACAACATCATCGAAA 57.296 34.783 0.00 0.00 0.00 3.46
276 277 5.937540 ACTATCACCAAACAACATCATCGAA 59.062 36.000 0.00 0.00 0.00 3.71
277 278 5.351189 CACTATCACCAAACAACATCATCGA 59.649 40.000 0.00 0.00 0.00 3.59
278 279 5.351189 TCACTATCACCAAACAACATCATCG 59.649 40.000 0.00 0.00 0.00 3.84
279 280 6.741992 TCACTATCACCAAACAACATCATC 57.258 37.500 0.00 0.00 0.00 2.92
280 281 6.151648 CCTTCACTATCACCAAACAACATCAT 59.848 38.462 0.00 0.00 0.00 2.45
281 282 5.473162 CCTTCACTATCACCAAACAACATCA 59.527 40.000 0.00 0.00 0.00 3.07
282 283 5.619981 GCCTTCACTATCACCAAACAACATC 60.620 44.000 0.00 0.00 0.00 3.06
283 284 4.218417 GCCTTCACTATCACCAAACAACAT 59.782 41.667 0.00 0.00 0.00 2.71
284 285 3.568007 GCCTTCACTATCACCAAACAACA 59.432 43.478 0.00 0.00 0.00 3.33
285 286 3.364964 CGCCTTCACTATCACCAAACAAC 60.365 47.826 0.00 0.00 0.00 3.32
286 287 2.811431 CGCCTTCACTATCACCAAACAA 59.189 45.455 0.00 0.00 0.00 2.83
287 288 2.037902 TCGCCTTCACTATCACCAAACA 59.962 45.455 0.00 0.00 0.00 2.83
288 289 2.695359 TCGCCTTCACTATCACCAAAC 58.305 47.619 0.00 0.00 0.00 2.93
289 290 3.055458 TCATCGCCTTCACTATCACCAAA 60.055 43.478 0.00 0.00 0.00 3.28
290 291 2.499693 TCATCGCCTTCACTATCACCAA 59.500 45.455 0.00 0.00 0.00 3.67
291 292 2.107366 TCATCGCCTTCACTATCACCA 58.893 47.619 0.00 0.00 0.00 4.17
292 293 2.890808 TCATCGCCTTCACTATCACC 57.109 50.000 0.00 0.00 0.00 4.02
293 294 3.062763 CCATCATCGCCTTCACTATCAC 58.937 50.000 0.00 0.00 0.00 3.06
294 295 2.965147 TCCATCATCGCCTTCACTATCA 59.035 45.455 0.00 0.00 0.00 2.15
295 296 3.006323 AGTCCATCATCGCCTTCACTATC 59.994 47.826 0.00 0.00 0.00 2.08
296 297 2.968574 AGTCCATCATCGCCTTCACTAT 59.031 45.455 0.00 0.00 0.00 2.12
297 298 2.101415 CAGTCCATCATCGCCTTCACTA 59.899 50.000 0.00 0.00 0.00 2.74
298 299 1.134580 CAGTCCATCATCGCCTTCACT 60.135 52.381 0.00 0.00 0.00 3.41
299 300 1.293924 CAGTCCATCATCGCCTTCAC 58.706 55.000 0.00 0.00 0.00 3.18
300 301 0.904649 ACAGTCCATCATCGCCTTCA 59.095 50.000 0.00 0.00 0.00 3.02
301 302 1.293924 CACAGTCCATCATCGCCTTC 58.706 55.000 0.00 0.00 0.00 3.46
302 303 0.615331 ACACAGTCCATCATCGCCTT 59.385 50.000 0.00 0.00 0.00 4.35
303 304 0.615331 AACACAGTCCATCATCGCCT 59.385 50.000 0.00 0.00 0.00 5.52
304 305 1.398390 GAAACACAGTCCATCATCGCC 59.602 52.381 0.00 0.00 0.00 5.54
305 306 2.350522 AGAAACACAGTCCATCATCGC 58.649 47.619 0.00 0.00 0.00 4.58
306 307 3.372206 GGAAGAAACACAGTCCATCATCG 59.628 47.826 0.00 0.00 0.00 3.84
307 308 4.326826 TGGAAGAAACACAGTCCATCATC 58.673 43.478 0.00 0.00 35.22 2.92
308 309 4.371624 TGGAAGAAACACAGTCCATCAT 57.628 40.909 0.00 0.00 35.22 2.45
309 310 3.855255 TGGAAGAAACACAGTCCATCA 57.145 42.857 0.00 0.00 35.22 3.07
310 311 4.580580 ACTTTGGAAGAAACACAGTCCATC 59.419 41.667 0.00 0.00 39.84 3.51
311 312 4.339247 CACTTTGGAAGAAACACAGTCCAT 59.661 41.667 0.00 0.00 39.84 3.41
312 313 3.694072 CACTTTGGAAGAAACACAGTCCA 59.306 43.478 0.00 0.00 38.39 4.02
313 314 3.945285 TCACTTTGGAAGAAACACAGTCC 59.055 43.478 0.00 0.00 27.08 3.85
314 315 5.560966 TTCACTTTGGAAGAAACACAGTC 57.439 39.130 0.00 0.00 27.08 3.51
315 316 6.530019 AATTCACTTTGGAAGAAACACAGT 57.470 33.333 0.00 0.00 29.52 3.55
316 317 7.260603 AGAAATTCACTTTGGAAGAAACACAG 58.739 34.615 0.00 0.00 0.00 3.66
317 318 7.169158 AGAAATTCACTTTGGAAGAAACACA 57.831 32.000 0.00 0.00 0.00 3.72
318 319 8.406297 ACTAGAAATTCACTTTGGAAGAAACAC 58.594 33.333 0.00 0.00 0.00 3.32
319 320 8.519799 ACTAGAAATTCACTTTGGAAGAAACA 57.480 30.769 0.00 0.00 0.00 2.83
320 321 9.803315 AAACTAGAAATTCACTTTGGAAGAAAC 57.197 29.630 0.00 0.00 0.00 2.78
390 391 5.728344 GCTTGCGTCTGTACTGTGTTAAAAA 60.728 40.000 0.00 0.00 0.00 1.94
391 392 4.260456 GCTTGCGTCTGTACTGTGTTAAAA 60.260 41.667 0.00 0.00 0.00 1.52
392 393 3.246699 GCTTGCGTCTGTACTGTGTTAAA 59.753 43.478 0.00 0.00 0.00 1.52
393 394 2.798283 GCTTGCGTCTGTACTGTGTTAA 59.202 45.455 0.00 0.00 0.00 2.01
394 395 2.400399 GCTTGCGTCTGTACTGTGTTA 58.600 47.619 0.00 0.00 0.00 2.41
395 396 1.217882 GCTTGCGTCTGTACTGTGTT 58.782 50.000 0.00 0.00 0.00 3.32
396 397 0.939577 CGCTTGCGTCTGTACTGTGT 60.940 55.000 6.86 0.00 0.00 3.72
397 398 0.939577 ACGCTTGCGTCTGTACTGTG 60.940 55.000 15.19 0.00 0.00 3.66
398 399 0.249322 AACGCTTGCGTCTGTACTGT 60.249 50.000 20.87 0.00 0.00 3.55
399 400 0.859232 AAACGCTTGCGTCTGTACTG 59.141 50.000 20.87 0.00 0.00 2.74
400 401 2.427232 TAAACGCTTGCGTCTGTACT 57.573 45.000 20.87 1.42 0.00 2.73
401 402 4.748023 CATATAAACGCTTGCGTCTGTAC 58.252 43.478 20.87 0.00 0.00 2.90
402 403 3.244345 GCATATAAACGCTTGCGTCTGTA 59.756 43.478 20.87 10.54 0.00 2.74
403 404 2.030457 GCATATAAACGCTTGCGTCTGT 59.970 45.455 20.87 8.51 0.00 3.41
404 405 2.030335 TGCATATAAACGCTTGCGTCTG 59.970 45.455 20.87 13.53 37.92 3.51
405 406 2.276201 TGCATATAAACGCTTGCGTCT 58.724 42.857 20.87 10.27 37.92 4.18
406 407 2.730183 TGCATATAAACGCTTGCGTC 57.270 45.000 20.87 7.38 37.92 5.19
407 408 4.213270 ACATATGCATATAAACGCTTGCGT 59.787 37.500 18.70 15.19 37.92 5.24
408 409 4.711721 ACATATGCATATAAACGCTTGCG 58.288 39.130 18.70 13.70 37.92 4.85
409 410 8.387354 TGTATACATATGCATATAAACGCTTGC 58.613 33.333 18.70 4.96 35.67 4.01
410 411 9.689075 GTGTATACATATGCATATAAACGCTTG 57.311 33.333 18.70 8.34 31.18 4.01
411 412 9.653287 AGTGTATACATATGCATATAAACGCTT 57.347 29.630 18.70 8.41 29.96 4.68
412 413 9.302345 GAGTGTATACATATGCATATAAACGCT 57.698 33.333 18.70 21.22 29.96 5.07
413 414 9.083080 TGAGTGTATACATATGCATATAAACGC 57.917 33.333 18.70 17.78 29.96 4.84
418 419 9.700831 AGAGGTGAGTGTATACATATGCATATA 57.299 33.333 18.70 5.27 31.18 0.86
419 420 8.601047 AGAGGTGAGTGTATACATATGCATAT 57.399 34.615 13.63 13.63 31.18 1.78
420 421 9.700831 ATAGAGGTGAGTGTATACATATGCATA 57.299 33.333 9.27 9.27 31.18 3.14
421 422 6.924913 AGAGGTGAGTGTATACATATGCAT 57.075 37.500 9.18 3.79 31.18 3.96
422 423 9.528489 TTATAGAGGTGAGTGTATACATATGCA 57.472 33.333 9.18 2.67 0.00 3.96
427 428 8.870116 TGCATTTATAGAGGTGAGTGTATACAT 58.130 33.333 9.18 0.00 0.00 2.29
428 429 8.141909 GTGCATTTATAGAGGTGAGTGTATACA 58.858 37.037 0.08 0.08 0.00 2.29
429 430 8.141909 TGTGCATTTATAGAGGTGAGTGTATAC 58.858 37.037 0.00 0.00 0.00 1.47
430 431 8.141909 GTGTGCATTTATAGAGGTGAGTGTATA 58.858 37.037 0.00 0.00 0.00 1.47
431 432 6.986817 GTGTGCATTTATAGAGGTGAGTGTAT 59.013 38.462 0.00 0.00 0.00 2.29
432 433 6.071051 TGTGTGCATTTATAGAGGTGAGTGTA 60.071 38.462 0.00 0.00 0.00 2.90
433 434 5.178797 GTGTGCATTTATAGAGGTGAGTGT 58.821 41.667 0.00 0.00 0.00 3.55
434 435 5.063944 GTGTGTGCATTTATAGAGGTGAGTG 59.936 44.000 0.00 0.00 0.00 3.51
435 436 5.178797 GTGTGTGCATTTATAGAGGTGAGT 58.821 41.667 0.00 0.00 0.00 3.41
436 437 4.268644 CGTGTGTGCATTTATAGAGGTGAG 59.731 45.833 0.00 0.00 0.00 3.51
437 438 4.180817 CGTGTGTGCATTTATAGAGGTGA 58.819 43.478 0.00 0.00 0.00 4.02
438 439 3.242413 GCGTGTGTGCATTTATAGAGGTG 60.242 47.826 0.00 0.00 34.15 4.00
439 440 2.936498 GCGTGTGTGCATTTATAGAGGT 59.064 45.455 0.00 0.00 34.15 3.85
440 441 2.935849 TGCGTGTGTGCATTTATAGAGG 59.064 45.455 0.00 0.00 40.62 3.69
450 451 1.731709 GATAAGATGTGCGTGTGTGCA 59.268 47.619 0.00 0.00 43.95 4.57
451 452 2.002586 AGATAAGATGTGCGTGTGTGC 58.997 47.619 0.00 0.00 0.00 4.57
452 453 3.515630 AGAGATAAGATGTGCGTGTGTG 58.484 45.455 0.00 0.00 0.00 3.82
453 454 3.876274 AGAGATAAGATGTGCGTGTGT 57.124 42.857 0.00 0.00 0.00 3.72
454 455 3.726235 CGTAGAGATAAGATGTGCGTGTG 59.274 47.826 0.00 0.00 0.00 3.82
455 456 3.626217 TCGTAGAGATAAGATGTGCGTGT 59.374 43.478 0.00 0.00 0.00 4.49
456 457 4.210832 TCGTAGAGATAAGATGTGCGTG 57.789 45.455 0.00 0.00 0.00 5.34
471 472 1.201647 CTTTTCGGAGGTGCTCGTAGA 59.798 52.381 0.00 0.00 0.00 2.59
472 473 1.201647 TCTTTTCGGAGGTGCTCGTAG 59.798 52.381 0.00 0.00 0.00 3.51
473 474 1.068055 GTCTTTTCGGAGGTGCTCGTA 60.068 52.381 0.00 0.00 0.00 3.43
474 475 0.319641 GTCTTTTCGGAGGTGCTCGT 60.320 55.000 0.00 0.00 0.00 4.18
475 476 0.038159 AGTCTTTTCGGAGGTGCTCG 60.038 55.000 0.00 0.00 0.00 5.03
476 477 1.000955 TCAGTCTTTTCGGAGGTGCTC 59.999 52.381 0.00 0.00 0.00 4.26
477 478 1.001406 CTCAGTCTTTTCGGAGGTGCT 59.999 52.381 0.00 0.00 0.00 4.40
478 479 1.270358 ACTCAGTCTTTTCGGAGGTGC 60.270 52.381 0.00 0.00 34.80 5.01
479 480 2.678324 GACTCAGTCTTTTCGGAGGTG 58.322 52.381 0.00 0.00 34.80 4.00
480 481 1.269998 CGACTCAGTCTTTTCGGAGGT 59.730 52.381 2.61 0.00 34.80 3.85
481 482 1.983972 CGACTCAGTCTTTTCGGAGG 58.016 55.000 2.61 0.00 34.80 4.30
485 486 0.784778 GTGCCGACTCAGTCTTTTCG 59.215 55.000 2.61 0.00 0.00 3.46
486 487 1.865865 TGTGCCGACTCAGTCTTTTC 58.134 50.000 2.61 0.00 0.00 2.29
487 488 2.224281 TGATGTGCCGACTCAGTCTTTT 60.224 45.455 2.61 0.00 0.00 2.27
488 489 1.344438 TGATGTGCCGACTCAGTCTTT 59.656 47.619 2.61 0.00 0.00 2.52
489 490 0.969149 TGATGTGCCGACTCAGTCTT 59.031 50.000 2.61 0.00 0.00 3.01
490 491 1.135915 GATGATGTGCCGACTCAGTCT 59.864 52.381 2.61 0.00 0.00 3.24
491 492 1.135915 AGATGATGTGCCGACTCAGTC 59.864 52.381 0.00 0.00 0.00 3.51
492 493 1.189752 AGATGATGTGCCGACTCAGT 58.810 50.000 0.00 0.00 0.00 3.41
493 494 1.931841 CAAGATGATGTGCCGACTCAG 59.068 52.381 0.00 0.00 0.00 3.35
494 495 1.550072 TCAAGATGATGTGCCGACTCA 59.450 47.619 0.00 0.00 0.00 3.41
495 496 2.299993 TCAAGATGATGTGCCGACTC 57.700 50.000 0.00 0.00 0.00 3.36
496 497 2.768253 TTCAAGATGATGTGCCGACT 57.232 45.000 0.00 0.00 0.00 4.18
497 498 4.361451 AATTTCAAGATGATGTGCCGAC 57.639 40.909 0.00 0.00 0.00 4.79
498 499 6.318396 TCATAAATTTCAAGATGATGTGCCGA 59.682 34.615 0.00 0.00 0.00 5.54
499 500 6.497437 TCATAAATTTCAAGATGATGTGCCG 58.503 36.000 0.00 0.00 0.00 5.69
500 501 8.192774 TCTTCATAAATTTCAAGATGATGTGCC 58.807 33.333 0.00 0.00 0.00 5.01
501 502 9.745880 ATCTTCATAAATTTCAAGATGATGTGC 57.254 29.630 14.65 0.00 34.87 4.57
538 539 9.961264 TCTTGAGGATAACATCTATACGTAGAT 57.039 33.333 0.08 0.00 46.23 1.98
539 540 9.788889 TTCTTGAGGATAACATCTATACGTAGA 57.211 33.333 0.08 0.00 41.03 2.59
556 557 9.529325 CGTACATACATAGATTTTTCTTGAGGA 57.471 33.333 0.00 0.00 0.00 3.71
557 558 8.276325 GCGTACATACATAGATTTTTCTTGAGG 58.724 37.037 0.00 0.00 0.00 3.86
558 559 9.035607 AGCGTACATACATAGATTTTTCTTGAG 57.964 33.333 0.00 0.00 0.00 3.02
559 560 8.942338 AGCGTACATACATAGATTTTTCTTGA 57.058 30.769 0.00 0.00 0.00 3.02
560 561 9.988350 AAAGCGTACATACATAGATTTTTCTTG 57.012 29.630 0.00 0.00 0.00 3.02
567 568 9.555727 ACCATAAAAAGCGTACATACATAGATT 57.444 29.630 0.00 0.00 0.00 2.40
568 569 8.988934 CACCATAAAAAGCGTACATACATAGAT 58.011 33.333 0.00 0.00 0.00 1.98
569 570 8.198778 TCACCATAAAAAGCGTACATACATAGA 58.801 33.333 0.00 0.00 0.00 1.98
570 571 8.360325 TCACCATAAAAAGCGTACATACATAG 57.640 34.615 0.00 0.00 0.00 2.23
571 572 8.896320 ATCACCATAAAAAGCGTACATACATA 57.104 30.769 0.00 0.00 0.00 2.29
572 573 7.497579 TGATCACCATAAAAAGCGTACATACAT 59.502 33.333 0.00 0.00 0.00 2.29
573 574 6.819146 TGATCACCATAAAAAGCGTACATACA 59.181 34.615 0.00 0.00 0.00 2.29
574 575 7.241663 TGATCACCATAAAAAGCGTACATAC 57.758 36.000 0.00 0.00 0.00 2.39
575 576 7.497579 ACATGATCACCATAAAAAGCGTACATA 59.502 33.333 0.00 0.00 33.31 2.29
576 577 6.318648 ACATGATCACCATAAAAAGCGTACAT 59.681 34.615 0.00 0.00 33.31 2.29
577 578 5.645929 ACATGATCACCATAAAAAGCGTACA 59.354 36.000 0.00 0.00 33.31 2.90
578 579 5.965334 CACATGATCACCATAAAAAGCGTAC 59.035 40.000 0.00 0.00 33.31 3.67
579 580 5.448496 GCACATGATCACCATAAAAAGCGTA 60.448 40.000 0.00 0.00 33.31 4.42
580 581 4.675146 GCACATGATCACCATAAAAAGCGT 60.675 41.667 0.00 0.00 33.31 5.07
581 582 3.792956 GCACATGATCACCATAAAAAGCG 59.207 43.478 0.00 0.00 33.31 4.68
582 583 4.746729 TGCACATGATCACCATAAAAAGC 58.253 39.130 0.00 0.00 33.31 3.51
583 584 7.646526 CAGTATGCACATGATCACCATAAAAAG 59.353 37.037 0.00 0.00 33.31 2.27
584 585 7.122501 ACAGTATGCACATGATCACCATAAAAA 59.877 33.333 0.00 0.00 42.53 1.94
585 586 6.602803 ACAGTATGCACATGATCACCATAAAA 59.397 34.615 0.00 0.00 42.53 1.52
586 587 6.121590 ACAGTATGCACATGATCACCATAAA 58.878 36.000 0.00 0.00 42.53 1.40
587 588 5.683681 ACAGTATGCACATGATCACCATAA 58.316 37.500 0.00 0.00 42.53 1.90
588 589 5.294734 ACAGTATGCACATGATCACCATA 57.705 39.130 0.00 0.50 42.53 2.74
589 590 4.160642 ACAGTATGCACATGATCACCAT 57.839 40.909 0.00 1.49 42.53 3.55
590 591 3.632643 ACAGTATGCACATGATCACCA 57.367 42.857 0.00 0.00 42.53 4.17
591 592 4.156556 ACAAACAGTATGCACATGATCACC 59.843 41.667 0.00 0.00 42.53 4.02
624 625 5.844516 AGCCAGGCATAACTACCTATTAGAA 59.155 40.000 15.80 0.00 33.38 2.10
627 628 6.600882 GTAGCCAGGCATAACTACCTATTA 57.399 41.667 15.80 0.00 33.38 0.98
633 634 1.766496 TGGGTAGCCAGGCATAACTAC 59.234 52.381 15.80 6.73 35.36 2.73
634 635 1.766496 GTGGGTAGCCAGGCATAACTA 59.234 52.381 15.48 0.88 0.00 2.24
635 636 0.546598 GTGGGTAGCCAGGCATAACT 59.453 55.000 15.48 0.00 0.00 2.24
636 637 0.465642 GGTGGGTAGCCAGGCATAAC 60.466 60.000 15.48 8.65 0.00 1.89
637 638 1.641552 GGGTGGGTAGCCAGGCATAA 61.642 60.000 15.48 0.00 44.02 1.90
638 639 2.076184 GGGTGGGTAGCCAGGCATA 61.076 63.158 15.48 0.00 44.02 3.14
649 651 2.747686 CGCAGTTGTAGGGTGGGT 59.252 61.111 0.00 0.00 0.00 4.51
658 660 1.071299 TCTCATGTGGCGCAGTTGT 59.929 52.632 10.83 0.00 0.00 3.32
666 668 2.860735 GAGATAACACGTCTCATGTGGC 59.139 50.000 0.00 0.00 41.35 5.01
668 670 4.377839 AGGAGATAACACGTCTCATGTG 57.622 45.455 5.61 0.00 43.05 3.21
669 671 4.748892 CAAGGAGATAACACGTCTCATGT 58.251 43.478 5.61 0.00 43.05 3.21
670 672 3.553511 GCAAGGAGATAACACGTCTCATG 59.446 47.826 5.61 5.10 43.05 3.07
671 673 3.449018 AGCAAGGAGATAACACGTCTCAT 59.551 43.478 5.61 0.00 43.05 2.90
672 674 2.826128 AGCAAGGAGATAACACGTCTCA 59.174 45.455 5.61 0.00 43.05 3.27
673 675 3.512033 AGCAAGGAGATAACACGTCTC 57.488 47.619 0.00 0.00 41.05 3.36
674 676 3.963428 AAGCAAGGAGATAACACGTCT 57.037 42.857 0.00 0.00 0.00 4.18
675 677 3.994392 TCAAAGCAAGGAGATAACACGTC 59.006 43.478 0.00 0.00 0.00 4.34
676 678 3.746492 GTCAAAGCAAGGAGATAACACGT 59.254 43.478 0.00 0.00 0.00 4.49
677 679 3.745975 TGTCAAAGCAAGGAGATAACACG 59.254 43.478 0.00 0.00 0.00 4.49
678 680 4.083271 GGTGTCAAAGCAAGGAGATAACAC 60.083 45.833 0.00 0.00 35.06 3.32
679 681 4.072131 GGTGTCAAAGCAAGGAGATAACA 58.928 43.478 0.00 0.00 0.00 2.41
680 682 4.072131 TGGTGTCAAAGCAAGGAGATAAC 58.928 43.478 0.00 0.00 32.00 1.89
681 683 4.365514 TGGTGTCAAAGCAAGGAGATAA 57.634 40.909 0.00 0.00 32.00 1.75
682 684 4.365514 TTGGTGTCAAAGCAAGGAGATA 57.634 40.909 0.00 0.00 41.27 1.98
683 685 2.957402 TGGTGTCAAAGCAAGGAGAT 57.043 45.000 0.00 0.00 32.00 2.75
684 686 2.727123 TTGGTGTCAAAGCAAGGAGA 57.273 45.000 0.00 0.00 41.27 3.71
685 687 4.326504 AATTTGGTGTCAAAGCAAGGAG 57.673 40.909 0.00 0.00 46.41 3.69
774 776 2.890961 GCCGCCGTTCTTCTAGCC 60.891 66.667 0.00 0.00 0.00 3.93
778 783 3.050275 GCTTGCCGCCGTTCTTCT 61.050 61.111 0.00 0.00 0.00 2.85
779 784 3.353836 TGCTTGCCGCCGTTCTTC 61.354 61.111 0.00 0.00 38.05 2.87
780 785 3.660111 GTGCTTGCCGCCGTTCTT 61.660 61.111 0.00 0.00 38.05 2.52
968 997 0.676466 ACGATGCGGCAAGGAATCAA 60.676 50.000 6.82 0.00 0.00 2.57
982 1011 0.806102 ATCTGACGGGCGAAACGATG 60.806 55.000 0.00 0.00 34.93 3.84
1011 1040 0.959372 ACTCGAACGTGACCTCGGAT 60.959 55.000 7.46 0.00 35.76 4.18
1131 1160 4.069869 TCGAAGACGACGTCCCTT 57.930 55.556 23.76 12.96 43.81 3.95
1325 1360 2.382746 CGGTACTCGACGGACACGA 61.383 63.158 0.00 0.00 44.68 4.35
1609 1644 2.179517 CCACGACTGCTCCGTCTC 59.820 66.667 0.00 0.00 38.29 3.36
1610 1645 4.057428 GCCACGACTGCTCCGTCT 62.057 66.667 0.00 0.00 38.29 4.18
1611 1646 4.057428 AGCCACGACTGCTCCGTC 62.057 66.667 0.00 0.00 38.29 4.79
1612 1647 4.363990 CAGCCACGACTGCTCCGT 62.364 66.667 0.00 0.00 41.36 4.69
1613 1648 3.978723 CTCAGCCACGACTGCTCCG 62.979 68.421 0.00 0.00 36.81 4.63
1614 1649 2.125753 CTCAGCCACGACTGCTCC 60.126 66.667 0.00 0.00 36.81 4.70
1620 1655 4.329545 TTGCCCCTCAGCCACGAC 62.330 66.667 0.00 0.00 0.00 4.34
1765 1800 4.838486 CAGCTCGTCCTCGGCGAC 62.838 72.222 4.99 0.00 37.94 5.19
1791 1826 4.382320 TCGTGGTACGCCTTGCCC 62.382 66.667 0.00 0.00 42.21 5.36
1844 1879 0.174389 GATGGAGTCGAGCAGCTCAA 59.826 55.000 22.49 0.00 33.66 3.02
1845 1880 1.812525 GATGGAGTCGAGCAGCTCA 59.187 57.895 22.49 6.83 33.66 4.26
1982 2017 2.066262 CCAAACACACTAGTACCAGCG 58.934 52.381 0.00 0.00 0.00 5.18
1988 2023 6.224665 AGTACAACACCAAACACACTAGTA 57.775 37.500 0.00 0.00 0.00 1.82
1996 2031 6.097270 ACAGAGTACTAGTACAACACCAAACA 59.903 38.462 29.87 0.00 38.48 2.83
2029 2064 3.247648 CCCTAAAATTCCAGATACACGCG 59.752 47.826 3.53 3.53 0.00 6.01
2160 2195 3.909732 AGGGGAAAAAGATGTGTGTGAA 58.090 40.909 0.00 0.00 0.00 3.18
2177 2212 1.612442 TGAGAGGGTTCGGAAGGGG 60.612 63.158 0.00 0.00 0.00 4.79
2236 2274 1.108776 GGTACGAGGCCTGACATACA 58.891 55.000 12.00 0.00 0.00 2.29
2392 2430 2.566833 ACTGCAGTTGAGCAACCATA 57.433 45.000 15.25 0.00 45.13 2.74
2588 2626 1.001517 TGCCCCAATGTGCACGTAT 60.002 52.632 12.96 0.00 31.31 3.06
2681 2719 3.994204 TTGCAGAGTACACGACAACTA 57.006 42.857 0.00 0.00 0.00 2.24
2695 2733 2.168106 AGTTGCCATGTGTTTTTGCAGA 59.832 40.909 0.00 0.00 32.88 4.26
2931 2971 1.533625 CCACACATCCGTTTGACCAT 58.466 50.000 0.00 0.00 0.00 3.55
2936 2976 1.511318 TTCGCCCACACATCCGTTTG 61.511 55.000 0.00 0.00 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.