Multiple sequence alignment - TraesCS4B01G331100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4B01G331100 | chr4B | 100.000 | 2966 | 0 | 0 | 1 | 2966 | 621715618 | 621712653 | 0.000000e+00 | 5478.0 |
1 | TraesCS4B01G331100 | chr4B | 88.732 | 71 | 7 | 1 | 2290 | 2359 | 508978467 | 508978537 | 5.270000e-13 | 86.1 |
2 | TraesCS4B01G331100 | chr5A | 91.834 | 2045 | 130 | 20 | 933 | 2964 | 667306224 | 667304204 | 0.000000e+00 | 2817.0 |
3 | TraesCS4B01G331100 | chr5A | 95.238 | 42 | 2 | 0 | 723 | 764 | 416182706 | 416182747 | 1.910000e-07 | 67.6 |
4 | TraesCS4B01G331100 | chr4D | 89.383 | 1620 | 111 | 30 | 1388 | 2964 | 486933120 | 486931519 | 0.000000e+00 | 1982.0 |
5 | TraesCS4B01G331100 | chr4D | 89.784 | 509 | 28 | 10 | 909 | 1396 | 486933654 | 486933149 | 5.400000e-177 | 630.0 |
6 | TraesCS4B01G331100 | chr4D | 78.906 | 512 | 75 | 13 | 23 | 526 | 486936166 | 486935680 | 1.720000e-82 | 316.0 |
7 | TraesCS4B01G331100 | chr4D | 100.000 | 36 | 0 | 0 | 813 | 848 | 486935428 | 486935393 | 1.910000e-07 | 67.6 |
8 | TraesCS4B01G331100 | chr6D | 95.455 | 44 | 1 | 1 | 722 | 764 | 31481096 | 31481053 | 5.300000e-08 | 69.4 |
9 | TraesCS4B01G331100 | chr6A | 95.455 | 44 | 1 | 1 | 722 | 764 | 31744141 | 31744184 | 5.300000e-08 | 69.4 |
10 | TraesCS4B01G331100 | chr6B | 80.899 | 89 | 13 | 4 | 726 | 813 | 696292169 | 696292254 | 1.910000e-07 | 67.6 |
11 | TraesCS4B01G331100 | chr2D | 95.122 | 41 | 2 | 0 | 725 | 765 | 426932159 | 426932199 | 6.860000e-07 | 65.8 |
12 | TraesCS4B01G331100 | chr2A | 95.122 | 41 | 2 | 0 | 725 | 765 | 562095058 | 562095098 | 6.860000e-07 | 65.8 |
13 | TraesCS4B01G331100 | chr1B | 95.122 | 41 | 2 | 0 | 725 | 765 | 643168399 | 643168359 | 6.860000e-07 | 65.8 |
14 | TraesCS4B01G331100 | chr1B | 93.023 | 43 | 3 | 0 | 724 | 766 | 621487508 | 621487466 | 2.470000e-06 | 63.9 |
15 | TraesCS4B01G331100 | chr2B | 89.796 | 49 | 4 | 1 | 725 | 772 | 51108062 | 51108014 | 8.880000e-06 | 62.1 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4B01G331100 | chr4B | 621712653 | 621715618 | 2965 | True | 5478.0 | 5478 | 100.00000 | 1 | 2966 | 1 | chr4B.!!$R1 | 2965 |
1 | TraesCS4B01G331100 | chr5A | 667304204 | 667306224 | 2020 | True | 2817.0 | 2817 | 91.83400 | 933 | 2964 | 1 | chr5A.!!$R1 | 2031 |
2 | TraesCS4B01G331100 | chr4D | 486931519 | 486936166 | 4647 | True | 748.9 | 1982 | 89.51825 | 23 | 2964 | 4 | chr4D.!!$R1 | 2941 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
19 | 20 | 0.035343 | GAGGAAAGCCACCACCTACC | 60.035 | 60.0 | 0.0 | 0.0 | 36.29 | 3.18 | F |
273 | 275 | 0.037326 | GACAGGGACTCGCATTGTCA | 60.037 | 55.0 | 9.4 | 0.0 | 38.36 | 3.58 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1908 | 3737 | 1.271379 | ACAACCTTCTTCCATGACGGG | 60.271 | 52.381 | 0.00 | 0.0 | 34.36 | 5.28 | R |
2176 | 4008 | 0.617935 | TGGGATGCAATCGAGTTCCA | 59.382 | 50.000 | 4.62 | 0.0 | 46.86 | 3.53 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
18 | 19 | 3.553109 | GAGGAAAGCCACCACCTAC | 57.447 | 57.895 | 0.00 | 0.00 | 36.29 | 3.18 |
19 | 20 | 0.035343 | GAGGAAAGCCACCACCTACC | 60.035 | 60.000 | 0.00 | 0.00 | 36.29 | 3.18 |
20 | 21 | 0.770557 | AGGAAAGCCACCACCTACCA | 60.771 | 55.000 | 0.00 | 0.00 | 36.29 | 3.25 |
21 | 22 | 0.608308 | GGAAAGCCACCACCTACCAC | 60.608 | 60.000 | 0.00 | 0.00 | 0.00 | 4.16 |
22 | 23 | 0.608308 | GAAAGCCACCACCTACCACC | 60.608 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
23 | 24 | 1.357272 | AAAGCCACCACCTACCACCA | 61.357 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
24 | 25 | 1.140134 | AAGCCACCACCTACCACCAT | 61.140 | 55.000 | 0.00 | 0.00 | 0.00 | 3.55 |
25 | 26 | 1.077716 | GCCACCACCTACCACCATC | 60.078 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
26 | 27 | 1.607612 | CCACCACCTACCACCATCC | 59.392 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
27 | 28 | 1.204786 | CCACCACCTACCACCATCCA | 61.205 | 60.000 | 0.00 | 0.00 | 0.00 | 3.41 |
28 | 29 | 0.918983 | CACCACCTACCACCATCCAT | 59.081 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
29 | 30 | 0.918983 | ACCACCTACCACCATCCATG | 59.081 | 55.000 | 0.00 | 0.00 | 0.00 | 3.66 |
30 | 31 | 0.466189 | CCACCTACCACCATCCATGC | 60.466 | 60.000 | 0.00 | 0.00 | 0.00 | 4.06 |
31 | 32 | 0.255604 | CACCTACCACCATCCATGCA | 59.744 | 55.000 | 0.00 | 0.00 | 0.00 | 3.96 |
32 | 33 | 0.255890 | ACCTACCACCATCCATGCAC | 59.744 | 55.000 | 0.00 | 0.00 | 0.00 | 4.57 |
33 | 34 | 0.466189 | CCTACCACCATCCATGCACC | 60.466 | 60.000 | 0.00 | 0.00 | 0.00 | 5.01 |
34 | 35 | 0.466189 | CTACCACCATCCATGCACCC | 60.466 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
35 | 36 | 1.932156 | TACCACCATCCATGCACCCC | 61.932 | 60.000 | 0.00 | 0.00 | 0.00 | 4.95 |
36 | 37 | 2.359797 | CACCATCCATGCACCCCA | 59.640 | 61.111 | 0.00 | 0.00 | 0.00 | 4.96 |
42 | 43 | 0.998928 | ATCCATGCACCCCAGTACAA | 59.001 | 50.000 | 0.00 | 0.00 | 0.00 | 2.41 |
55 | 56 | 3.193691 | CCCAGTACAAAACACCAAACACA | 59.806 | 43.478 | 0.00 | 0.00 | 0.00 | 3.72 |
72 | 73 | 2.618241 | ACACAACTGCAACAATCGACAT | 59.382 | 40.909 | 0.00 | 0.00 | 0.00 | 3.06 |
79 | 80 | 1.135972 | GCAACAATCGACATCAACGCT | 60.136 | 47.619 | 0.00 | 0.00 | 0.00 | 5.07 |
81 | 82 | 3.659735 | CAACAATCGACATCAACGCTAC | 58.340 | 45.455 | 0.00 | 0.00 | 0.00 | 3.58 |
82 | 83 | 1.917955 | ACAATCGACATCAACGCTACG | 59.082 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
84 | 85 | 0.100682 | ATCGACATCAACGCTACGCT | 59.899 | 50.000 | 0.00 | 0.00 | 0.00 | 5.07 |
85 | 86 | 0.109458 | TCGACATCAACGCTACGCTT | 60.109 | 50.000 | 0.00 | 0.00 | 0.00 | 4.68 |
88 | 89 | 1.321743 | GACATCAACGCTACGCTTGAG | 59.678 | 52.381 | 9.55 | 6.06 | 33.42 | 3.02 |
93 | 94 | 0.314302 | AACGCTACGCTTGAGTGTCT | 59.686 | 50.000 | 0.00 | 0.00 | 36.65 | 3.41 |
98 | 99 | 2.171940 | CGCTTGAGTGTCTTGCGC | 59.828 | 61.111 | 0.00 | 0.00 | 40.15 | 6.09 |
129 | 130 | 3.181475 | GGACACAAATCTCGCTAGATCCA | 60.181 | 47.826 | 0.55 | 0.00 | 41.81 | 3.41 |
130 | 131 | 4.433615 | GACACAAATCTCGCTAGATCCAA | 58.566 | 43.478 | 0.55 | 0.00 | 41.81 | 3.53 |
131 | 132 | 4.437239 | ACACAAATCTCGCTAGATCCAAG | 58.563 | 43.478 | 0.55 | 0.00 | 41.81 | 3.61 |
132 | 133 | 4.160439 | ACACAAATCTCGCTAGATCCAAGA | 59.840 | 41.667 | 0.55 | 0.00 | 41.81 | 3.02 |
133 | 134 | 4.505922 | CACAAATCTCGCTAGATCCAAGAC | 59.494 | 45.833 | 0.55 | 0.00 | 41.81 | 3.01 |
134 | 135 | 4.054671 | CAAATCTCGCTAGATCCAAGACC | 58.945 | 47.826 | 0.55 | 0.00 | 41.81 | 3.85 |
135 | 136 | 1.309950 | TCTCGCTAGATCCAAGACCG | 58.690 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
136 | 137 | 0.312416 | CTCGCTAGATCCAAGACCGG | 59.688 | 60.000 | 0.00 | 0.00 | 0.00 | 5.28 |
137 | 138 | 1.300233 | CGCTAGATCCAAGACCGGC | 60.300 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
138 | 139 | 1.823295 | GCTAGATCCAAGACCGGCA | 59.177 | 57.895 | 0.00 | 0.00 | 0.00 | 5.69 |
139 | 140 | 0.178068 | GCTAGATCCAAGACCGGCAA | 59.822 | 55.000 | 0.00 | 0.00 | 0.00 | 4.52 |
153 | 154 | 1.675641 | GGCAAGAAGACCGCACCAT | 60.676 | 57.895 | 0.00 | 0.00 | 0.00 | 3.55 |
154 | 155 | 1.244019 | GGCAAGAAGACCGCACCATT | 61.244 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
179 | 180 | 3.186613 | GGCACCTCTGAAAGAAAACTACG | 59.813 | 47.826 | 0.00 | 0.00 | 46.34 | 3.51 |
181 | 182 | 3.186613 | CACCTCTGAAAGAAAACTACGCC | 59.813 | 47.826 | 0.00 | 0.00 | 46.34 | 5.68 |
182 | 183 | 2.742589 | CCTCTGAAAGAAAACTACGCCC | 59.257 | 50.000 | 0.00 | 0.00 | 46.34 | 6.13 |
194 | 195 | 2.249139 | ACTACGCCCATCCTATCTTCC | 58.751 | 52.381 | 0.00 | 0.00 | 0.00 | 3.46 |
195 | 196 | 1.202582 | CTACGCCCATCCTATCTTCCG | 59.797 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
221 | 223 | 0.768221 | TGAAACTGCTGAGGTCCCCT | 60.768 | 55.000 | 0.00 | 0.00 | 36.03 | 4.79 |
253 | 255 | 0.941542 | CTAGAGAGGCGGACGAAGAG | 59.058 | 60.000 | 0.00 | 0.00 | 0.00 | 2.85 |
259 | 261 | 2.182030 | GCGGACGAAGAGGACAGG | 59.818 | 66.667 | 0.00 | 0.00 | 0.00 | 4.00 |
268 | 270 | 0.616111 | AAGAGGACAGGGACTCGCAT | 60.616 | 55.000 | 0.00 | 0.00 | 34.60 | 4.73 |
273 | 275 | 0.037326 | GACAGGGACTCGCATTGTCA | 60.037 | 55.000 | 9.40 | 0.00 | 38.36 | 3.58 |
275 | 277 | 1.021390 | CAGGGACTCGCATTGTCACC | 61.021 | 60.000 | 0.00 | 0.00 | 38.52 | 4.02 |
276 | 278 | 1.003839 | GGGACTCGCATTGTCACCA | 60.004 | 57.895 | 0.00 | 0.00 | 36.26 | 4.17 |
282 | 284 | 2.158300 | CGCATTGTCACCAGCGTTA | 58.842 | 52.632 | 0.00 | 0.00 | 44.67 | 3.18 |
290 | 292 | 2.626266 | TGTCACCAGCGTTAAGAGAAGA | 59.374 | 45.455 | 0.00 | 0.00 | 0.00 | 2.87 |
300 | 302 | 6.034470 | CAGCGTTAAGAGAAGACAAGAAGATC | 59.966 | 42.308 | 0.00 | 0.00 | 0.00 | 2.75 |
301 | 303 | 5.864474 | GCGTTAAGAGAAGACAAGAAGATCA | 59.136 | 40.000 | 0.00 | 0.00 | 0.00 | 2.92 |
303 | 305 | 6.863645 | CGTTAAGAGAAGACAAGAAGATCACA | 59.136 | 38.462 | 0.00 | 0.00 | 0.00 | 3.58 |
304 | 306 | 7.543868 | CGTTAAGAGAAGACAAGAAGATCACAT | 59.456 | 37.037 | 0.00 | 0.00 | 0.00 | 3.21 |
305 | 307 | 8.868916 | GTTAAGAGAAGACAAGAAGATCACATC | 58.131 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
306 | 308 | 5.976458 | AGAGAAGACAAGAAGATCACATCC | 58.024 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
307 | 309 | 5.096443 | AGAAGACAAGAAGATCACATCCC | 57.904 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
308 | 310 | 4.782156 | AGAAGACAAGAAGATCACATCCCT | 59.218 | 41.667 | 0.00 | 0.00 | 0.00 | 4.20 |
309 | 311 | 5.960811 | AGAAGACAAGAAGATCACATCCCTA | 59.039 | 40.000 | 0.00 | 0.00 | 0.00 | 3.53 |
310 | 312 | 6.441924 | AGAAGACAAGAAGATCACATCCCTAA | 59.558 | 38.462 | 0.00 | 0.00 | 0.00 | 2.69 |
311 | 313 | 5.983540 | AGACAAGAAGATCACATCCCTAAC | 58.016 | 41.667 | 0.00 | 0.00 | 0.00 | 2.34 |
312 | 314 | 5.485353 | AGACAAGAAGATCACATCCCTAACA | 59.515 | 40.000 | 0.00 | 0.00 | 0.00 | 2.41 |
313 | 315 | 5.491982 | ACAAGAAGATCACATCCCTAACAC | 58.508 | 41.667 | 0.00 | 0.00 | 0.00 | 3.32 |
314 | 316 | 4.762289 | AGAAGATCACATCCCTAACACC | 57.238 | 45.455 | 0.00 | 0.00 | 0.00 | 4.16 |
315 | 317 | 4.366267 | AGAAGATCACATCCCTAACACCT | 58.634 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
316 | 318 | 4.785376 | AGAAGATCACATCCCTAACACCTT | 59.215 | 41.667 | 0.00 | 0.00 | 0.00 | 3.50 |
330 | 332 | 0.310854 | CACCTTGCTGGAACGGTTTC | 59.689 | 55.000 | 0.00 | 0.00 | 39.71 | 2.78 |
341 | 343 | 0.883370 | AACGGTTTCCAGGAGCGAAC | 60.883 | 55.000 | 6.74 | 0.62 | 40.15 | 3.95 |
345 | 347 | 2.774687 | GGTTTCCAGGAGCGAACTAAA | 58.225 | 47.619 | 3.05 | 0.00 | 0.00 | 1.85 |
347 | 349 | 3.400255 | GTTTCCAGGAGCGAACTAAACT | 58.600 | 45.455 | 0.00 | 0.00 | 0.00 | 2.66 |
356 | 358 | 4.451096 | GGAGCGAACTAAACTGTTGATTCA | 59.549 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
359 | 361 | 5.470098 | AGCGAACTAAACTGTTGATTCACAT | 59.530 | 36.000 | 0.00 | 0.00 | 0.00 | 3.21 |
362 | 364 | 7.351981 | CGAACTAAACTGTTGATTCACATGAA | 58.648 | 34.615 | 0.00 | 0.00 | 38.56 | 2.57 |
363 | 365 | 7.321271 | CGAACTAAACTGTTGATTCACATGAAC | 59.679 | 37.037 | 0.00 | 0.00 | 36.80 | 3.18 |
366 | 368 | 8.131100 | ACTAAACTGTTGATTCACATGAACTTG | 58.869 | 33.333 | 0.00 | 0.00 | 36.80 | 3.16 |
389 | 391 | 9.993881 | CTTGAAAGTACATGAAAAATAAAAGCG | 57.006 | 29.630 | 0.00 | 0.00 | 0.00 | 4.68 |
484 | 487 | 4.102524 | ACAATGAGGTTTAGCGGATGGATA | 59.897 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
511 | 518 | 7.598759 | TTTACCAAAATAGGGTGCAAAGTAA | 57.401 | 32.000 | 0.00 | 0.00 | 39.48 | 2.24 |
512 | 519 | 7.784470 | TTACCAAAATAGGGTGCAAAGTAAT | 57.216 | 32.000 | 0.00 | 0.00 | 39.48 | 1.89 |
514 | 521 | 6.016555 | ACCAAAATAGGGTGCAAAGTAATCT | 58.983 | 36.000 | 0.00 | 0.00 | 37.23 | 2.40 |
521 | 528 | 9.528489 | AATAGGGTGCAAAGTAATCTTAGAAAA | 57.472 | 29.630 | 0.00 | 0.00 | 33.09 | 2.29 |
541 | 548 | 3.701205 | AAATGCAAAGGTTCCAATCCC | 57.299 | 42.857 | 0.00 | 0.00 | 0.00 | 3.85 |
542 | 549 | 1.185315 | ATGCAAAGGTTCCAATCCCG | 58.815 | 50.000 | 0.00 | 0.00 | 0.00 | 5.14 |
544 | 551 | 0.243636 | GCAAAGGTTCCAATCCCGTG | 59.756 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
555 | 591 | 5.070770 | TCCAATCCCGTGAATCAAATTTG | 57.929 | 39.130 | 12.15 | 12.15 | 0.00 | 2.32 |
559 | 648 | 4.497473 | TCCCGTGAATCAAATTTGTGAC | 57.503 | 40.909 | 17.47 | 10.24 | 0.00 | 3.67 |
564 | 653 | 6.410038 | CCGTGAATCAAATTTGTGACAAAAC | 58.590 | 36.000 | 15.31 | 5.13 | 0.00 | 2.43 |
565 | 654 | 6.035435 | CCGTGAATCAAATTTGTGACAAAACA | 59.965 | 34.615 | 15.31 | 4.63 | 0.00 | 2.83 |
572 | 661 | 8.334016 | TCAAATTTGTGACAAAACATCTTACG | 57.666 | 30.769 | 15.31 | 0.63 | 0.00 | 3.18 |
578 | 667 | 8.775220 | TTGTGACAAAACATCTTACGTTAATG | 57.225 | 30.769 | 0.00 | 0.00 | 0.00 | 1.90 |
586 | 675 | 8.603242 | AAACATCTTACGTTAATGAACAGAGT | 57.397 | 30.769 | 0.58 | 0.00 | 35.06 | 3.24 |
646 | 741 | 7.888250 | GGGAAATACTTTCTCTGATCCAAAT | 57.112 | 36.000 | 0.00 | 0.00 | 37.18 | 2.32 |
647 | 742 | 7.935520 | GGGAAATACTTTCTCTGATCCAAATC | 58.064 | 38.462 | 0.00 | 0.00 | 37.18 | 2.17 |
648 | 743 | 7.557719 | GGGAAATACTTTCTCTGATCCAAATCA | 59.442 | 37.037 | 0.00 | 0.00 | 37.18 | 2.57 |
649 | 744 | 8.960591 | GGAAATACTTTCTCTGATCCAAATCAA | 58.039 | 33.333 | 0.00 | 0.00 | 39.22 | 2.57 |
653 | 748 | 9.690913 | ATACTTTCTCTGATCCAAATCAATTGA | 57.309 | 29.630 | 11.26 | 11.26 | 41.33 | 2.57 |
654 | 749 | 7.824672 | ACTTTCTCTGATCCAAATCAATTGAC | 58.175 | 34.615 | 11.07 | 0.00 | 41.33 | 3.18 |
655 | 750 | 6.426980 | TTCTCTGATCCAAATCAATTGACG | 57.573 | 37.500 | 11.07 | 2.30 | 41.33 | 4.35 |
656 | 751 | 4.333649 | TCTCTGATCCAAATCAATTGACGC | 59.666 | 41.667 | 11.07 | 0.00 | 41.33 | 5.19 |
657 | 752 | 4.009002 | TCTGATCCAAATCAATTGACGCA | 58.991 | 39.130 | 11.07 | 1.05 | 41.33 | 5.24 |
658 | 753 | 4.095334 | TCTGATCCAAATCAATTGACGCAG | 59.905 | 41.667 | 11.07 | 10.16 | 41.33 | 5.18 |
659 | 754 | 2.634982 | TCCAAATCAATTGACGCAGC | 57.365 | 45.000 | 11.07 | 0.00 | 41.85 | 5.25 |
660 | 755 | 1.202114 | TCCAAATCAATTGACGCAGCC | 59.798 | 47.619 | 11.07 | 0.00 | 41.85 | 4.85 |
661 | 756 | 1.203052 | CCAAATCAATTGACGCAGCCT | 59.797 | 47.619 | 11.07 | 0.00 | 41.85 | 4.58 |
662 | 757 | 2.423185 | CCAAATCAATTGACGCAGCCTA | 59.577 | 45.455 | 11.07 | 0.00 | 41.85 | 3.93 |
663 | 758 | 3.067180 | CCAAATCAATTGACGCAGCCTAT | 59.933 | 43.478 | 11.07 | 0.00 | 41.85 | 2.57 |
664 | 759 | 4.440525 | CCAAATCAATTGACGCAGCCTATT | 60.441 | 41.667 | 11.07 | 0.00 | 41.85 | 1.73 |
665 | 760 | 5.221028 | CCAAATCAATTGACGCAGCCTATTA | 60.221 | 40.000 | 11.07 | 0.00 | 41.85 | 0.98 |
670 | 765 | 2.706555 | TGACGCAGCCTATTAGATCG | 57.293 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
683 | 778 | 6.606395 | GCCTATTAGATCGGAGGGAGTATAAA | 59.394 | 42.308 | 7.18 | 0.00 | 0.00 | 1.40 |
689 | 784 | 7.619512 | AGATCGGAGGGAGTATAAAATTTCT | 57.380 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
693 | 788 | 7.399634 | TCGGAGGGAGTATAAAATTTCTTTGT | 58.600 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
702 | 797 | 9.916397 | AGTATAAAATTTCTTTGTATCGAAGCG | 57.084 | 29.630 | 0.00 | 0.00 | 0.00 | 4.68 |
703 | 798 | 9.698617 | GTATAAAATTTCTTTGTATCGAAGCGT | 57.301 | 29.630 | 0.00 | 0.00 | 0.00 | 5.07 |
706 | 801 | 3.587797 | TTCTTTGTATCGAAGCGTCCT | 57.412 | 42.857 | 0.00 | 0.00 | 0.00 | 3.85 |
707 | 802 | 3.587797 | TCTTTGTATCGAAGCGTCCTT | 57.412 | 42.857 | 0.00 | 0.00 | 0.00 | 3.36 |
709 | 804 | 4.418392 | TCTTTGTATCGAAGCGTCCTTAC | 58.582 | 43.478 | 0.00 | 0.00 | 0.00 | 2.34 |
724 | 819 | 5.519722 | CGTCCTTACAAAGAATTGCAAACT | 58.480 | 37.500 | 1.71 | 3.20 | 40.34 | 2.66 |
725 | 820 | 6.664515 | CGTCCTTACAAAGAATTGCAAACTA | 58.335 | 36.000 | 1.71 | 0.00 | 40.34 | 2.24 |
726 | 821 | 6.577427 | CGTCCTTACAAAGAATTGCAAACTAC | 59.423 | 38.462 | 1.71 | 0.00 | 40.34 | 2.73 |
727 | 822 | 7.519970 | CGTCCTTACAAAGAATTGCAAACTACT | 60.520 | 37.037 | 1.71 | 0.00 | 40.34 | 2.57 |
728 | 823 | 8.135529 | GTCCTTACAAAGAATTGCAAACTACTT | 58.864 | 33.333 | 1.71 | 4.20 | 40.34 | 2.24 |
729 | 824 | 8.349983 | TCCTTACAAAGAATTGCAAACTACTTC | 58.650 | 33.333 | 1.71 | 2.00 | 40.34 | 3.01 |
730 | 825 | 7.595130 | CCTTACAAAGAATTGCAAACTACTTCC | 59.405 | 37.037 | 1.71 | 0.00 | 40.34 | 3.46 |
731 | 826 | 6.715347 | ACAAAGAATTGCAAACTACTTCCT | 57.285 | 33.333 | 1.71 | 0.00 | 40.34 | 3.36 |
732 | 827 | 6.739112 | ACAAAGAATTGCAAACTACTTCCTC | 58.261 | 36.000 | 1.71 | 0.00 | 40.34 | 3.71 |
733 | 828 | 5.966742 | AAGAATTGCAAACTACTTCCTCC | 57.033 | 39.130 | 1.71 | 0.00 | 0.00 | 4.30 |
734 | 829 | 5.248380 | AGAATTGCAAACTACTTCCTCCT | 57.752 | 39.130 | 1.71 | 0.00 | 0.00 | 3.69 |
735 | 830 | 5.635120 | AGAATTGCAAACTACTTCCTCCTT | 58.365 | 37.500 | 1.71 | 0.00 | 0.00 | 3.36 |
736 | 831 | 5.707764 | AGAATTGCAAACTACTTCCTCCTTC | 59.292 | 40.000 | 1.71 | 0.00 | 0.00 | 3.46 |
737 | 832 | 4.706842 | TTGCAAACTACTTCCTCCTTCT | 57.293 | 40.909 | 0.00 | 0.00 | 0.00 | 2.85 |
738 | 833 | 4.273148 | TGCAAACTACTTCCTCCTTCTC | 57.727 | 45.455 | 0.00 | 0.00 | 0.00 | 2.87 |
739 | 834 | 3.646162 | TGCAAACTACTTCCTCCTTCTCA | 59.354 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
740 | 835 | 4.287067 | TGCAAACTACTTCCTCCTTCTCAT | 59.713 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
741 | 836 | 5.483937 | TGCAAACTACTTCCTCCTTCTCATA | 59.516 | 40.000 | 0.00 | 0.00 | 0.00 | 2.15 |
742 | 837 | 6.013725 | TGCAAACTACTTCCTCCTTCTCATAA | 60.014 | 38.462 | 0.00 | 0.00 | 0.00 | 1.90 |
743 | 838 | 7.051000 | GCAAACTACTTCCTCCTTCTCATAAT | 58.949 | 38.462 | 0.00 | 0.00 | 0.00 | 1.28 |
744 | 839 | 8.204836 | GCAAACTACTTCCTCCTTCTCATAATA | 58.795 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
751 | 846 | 8.811994 | ACTTCCTCCTTCTCATAATATAAGAGC | 58.188 | 37.037 | 0.00 | 0.00 | 0.00 | 4.09 |
752 | 847 | 7.397892 | TCCTCCTTCTCATAATATAAGAGCG | 57.602 | 40.000 | 0.00 | 0.00 | 0.00 | 5.03 |
753 | 848 | 6.948886 | TCCTCCTTCTCATAATATAAGAGCGT | 59.051 | 38.462 | 0.00 | 0.00 | 0.00 | 5.07 |
754 | 849 | 7.451877 | TCCTCCTTCTCATAATATAAGAGCGTT | 59.548 | 37.037 | 0.00 | 0.00 | 0.00 | 4.84 |
755 | 850 | 8.091449 | CCTCCTTCTCATAATATAAGAGCGTTT | 58.909 | 37.037 | 0.00 | 0.00 | 0.00 | 3.60 |
756 | 851 | 9.482627 | CTCCTTCTCATAATATAAGAGCGTTTT | 57.517 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
757 | 852 | 9.832445 | TCCTTCTCATAATATAAGAGCGTTTTT | 57.168 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
810 | 905 | 9.683870 | ACTTATATTATACTAAGACGGAGGGAG | 57.316 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
811 | 906 | 9.683870 | CTTATATTATACTAAGACGGAGGGAGT | 57.316 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
848 | 943 | 5.815233 | TGAAACAAATTTGCCATAGGGAA | 57.185 | 34.783 | 18.12 | 0.00 | 35.59 | 3.97 |
849 | 944 | 5.792741 | TGAAACAAATTTGCCATAGGGAAG | 58.207 | 37.500 | 18.12 | 0.00 | 33.87 | 3.46 |
850 | 945 | 5.541868 | TGAAACAAATTTGCCATAGGGAAGA | 59.458 | 36.000 | 18.12 | 0.00 | 33.87 | 2.87 |
851 | 946 | 6.213195 | TGAAACAAATTTGCCATAGGGAAGAT | 59.787 | 34.615 | 18.12 | 0.00 | 33.87 | 2.40 |
853 | 948 | 4.651045 | ACAAATTTGCCATAGGGAAGATCC | 59.349 | 41.667 | 18.12 | 0.00 | 33.87 | 3.36 |
880 | 996 | 0.329261 | CCTTGCCCCATCTGTCAGAA | 59.671 | 55.000 | 6.64 | 0.00 | 0.00 | 3.02 |
881 | 997 | 1.272092 | CCTTGCCCCATCTGTCAGAAA | 60.272 | 52.381 | 6.64 | 0.00 | 0.00 | 2.52 |
883 | 999 | 2.425143 | TGCCCCATCTGTCAGAAATC | 57.575 | 50.000 | 6.64 | 0.00 | 0.00 | 2.17 |
885 | 1001 | 2.295885 | GCCCCATCTGTCAGAAATCAG | 58.704 | 52.381 | 6.64 | 0.00 | 0.00 | 2.90 |
891 | 1007 | 3.685139 | TCTGTCAGAAATCAGGGACAC | 57.315 | 47.619 | 0.00 | 0.00 | 35.51 | 3.67 |
902 | 1018 | 2.507484 | TCAGGGACACAGAAATGCAAG | 58.493 | 47.619 | 0.00 | 0.00 | 0.00 | 4.01 |
903 | 1019 | 2.158623 | TCAGGGACACAGAAATGCAAGT | 60.159 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
904 | 1020 | 2.227388 | CAGGGACACAGAAATGCAAGTC | 59.773 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
905 | 1021 | 1.197721 | GGGACACAGAAATGCAAGTCG | 59.802 | 52.381 | 0.00 | 0.00 | 0.00 | 4.18 |
906 | 1022 | 2.143122 | GGACACAGAAATGCAAGTCGA | 58.857 | 47.619 | 0.00 | 0.00 | 0.00 | 4.20 |
907 | 1023 | 2.096218 | GGACACAGAAATGCAAGTCGAC | 60.096 | 50.000 | 7.70 | 7.70 | 0.00 | 4.20 |
909 | 1025 | 2.802816 | ACACAGAAATGCAAGTCGACTC | 59.197 | 45.455 | 20.33 | 8.01 | 0.00 | 3.36 |
911 | 1027 | 2.802816 | ACAGAAATGCAAGTCGACTCAC | 59.197 | 45.455 | 20.33 | 14.39 | 0.00 | 3.51 |
925 | 2699 | 1.957695 | CTCACGCTCTTGCTGTGCA | 60.958 | 57.895 | 0.00 | 0.00 | 40.62 | 4.57 |
944 | 2718 | 0.457851 | AGTAGCATCTGACACTCGCC | 59.542 | 55.000 | 0.00 | 0.00 | 0.00 | 5.54 |
946 | 2720 | 0.173481 | TAGCATCTGACACTCGCCAC | 59.827 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
960 | 2734 | 2.368011 | GCCACCTCCTACCCACCTC | 61.368 | 68.421 | 0.00 | 0.00 | 0.00 | 3.85 |
961 | 2735 | 1.689582 | CCACCTCCTACCCACCTCC | 60.690 | 68.421 | 0.00 | 0.00 | 0.00 | 4.30 |
962 | 2736 | 1.392534 | CACCTCCTACCCACCTCCT | 59.607 | 63.158 | 0.00 | 0.00 | 0.00 | 3.69 |
963 | 2737 | 0.635009 | CACCTCCTACCCACCTCCTA | 59.365 | 60.000 | 0.00 | 0.00 | 0.00 | 2.94 |
964 | 2738 | 1.220750 | CACCTCCTACCCACCTCCTAT | 59.779 | 57.143 | 0.00 | 0.00 | 0.00 | 2.57 |
967 | 2741 | 0.865362 | TCCTACCCACCTCCTATCCC | 59.135 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
968 | 2742 | 0.178900 | CCTACCCACCTCCTATCCCC | 60.179 | 65.000 | 0.00 | 0.00 | 0.00 | 4.81 |
969 | 2743 | 0.868186 | CTACCCACCTCCTATCCCCT | 59.132 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
970 | 2744 | 1.223337 | CTACCCACCTCCTATCCCCTT | 59.777 | 57.143 | 0.00 | 0.00 | 0.00 | 3.95 |
992 | 2769 | 1.096386 | CGTCCGTCTAGGTCTGGAGG | 61.096 | 65.000 | 0.00 | 0.00 | 41.99 | 4.30 |
1221 | 3010 | 0.816373 | GTCGGTACCCACCTCTTCTC | 59.184 | 60.000 | 6.25 | 0.00 | 43.33 | 2.87 |
1224 | 3013 | 1.196012 | GGTACCCACCTCTTCTCCTG | 58.804 | 60.000 | 0.00 | 0.00 | 42.11 | 3.86 |
1229 | 3018 | 0.251634 | CCACCTCTTCTCCTGCTTCC | 59.748 | 60.000 | 0.00 | 0.00 | 0.00 | 3.46 |
1252 | 3041 | 4.435253 | CGCAGCTAGTTTCTTCACATCTTG | 60.435 | 45.833 | 0.00 | 0.00 | 0.00 | 3.02 |
1262 | 3051 | 6.455360 | TTCTTCACATCTTGTTTTGCTTCT | 57.545 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
1265 | 3054 | 5.428496 | TCACATCTTGTTTTGCTTCTCTG | 57.572 | 39.130 | 0.00 | 0.00 | 0.00 | 3.35 |
1308 | 3097 | 9.849166 | TTCGTTGATAAAGATGGAAATTTTACC | 57.151 | 29.630 | 0.00 | 0.00 | 0.00 | 2.85 |
1357 | 3149 | 6.705863 | ATTATCCAGTTTCTGAATTGAGGC | 57.294 | 37.500 | 0.00 | 0.00 | 32.44 | 4.70 |
1396 | 3188 | 6.600427 | TGGCATGTTCATATGTATGGATGATC | 59.400 | 38.462 | 1.90 | 0.00 | 32.27 | 2.92 |
1629 | 3458 | 0.617535 | AAGGCCAGGCATTTAACCCC | 60.618 | 55.000 | 15.19 | 0.00 | 0.00 | 4.95 |
1830 | 3659 | 2.957402 | TGCCCAACACTGATCTTCTT | 57.043 | 45.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1902 | 3731 | 0.761802 | GATGGTGGGATGAGGTCTCC | 59.238 | 60.000 | 0.00 | 0.00 | 0.00 | 3.71 |
1905 | 3734 | 2.764128 | TGGGATGAGGTCTCCGCC | 60.764 | 66.667 | 0.00 | 0.00 | 33.29 | 6.13 |
1908 | 3737 | 4.593864 | GATGAGGTCTCCGCCCGC | 62.594 | 72.222 | 0.00 | 0.00 | 0.00 | 6.13 |
2034 | 3864 | 2.289547 | ACGTTCTGTTATGTGTTGCCAC | 59.710 | 45.455 | 0.00 | 0.00 | 42.19 | 5.01 |
2176 | 4008 | 1.696063 | ATTCTGTGCTGTTGCCTGTT | 58.304 | 45.000 | 0.00 | 0.00 | 38.71 | 3.16 |
2257 | 4089 | 3.139077 | CCTGTTACTTTCAGTGGGTCAC | 58.861 | 50.000 | 0.00 | 0.00 | 34.10 | 3.67 |
2317 | 4150 | 8.534496 | CCTCCATTCCAAATTATTGAAGTTCTT | 58.466 | 33.333 | 4.17 | 0.00 | 38.94 | 2.52 |
2336 | 4169 | 6.547510 | AGTTCTTGCTTTGTCCTAAGTCAAAT | 59.452 | 34.615 | 0.00 | 0.00 | 31.96 | 2.32 |
2342 | 4175 | 9.691362 | TTGCTTTGTCCTAAGTCAAATTTATTC | 57.309 | 29.630 | 0.00 | 0.00 | 31.96 | 1.75 |
2470 | 4308 | 9.626045 | CACATCTTGATTCAATATTGATCCATG | 57.374 | 33.333 | 18.61 | 18.10 | 37.00 | 3.66 |
2553 | 4391 | 6.203915 | TGCGAGTTGTCATTTGTAGTATTTGT | 59.796 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
2629 | 4467 | 5.904362 | AACAAATAGAGTCCTGGCAAATC | 57.096 | 39.130 | 0.00 | 0.00 | 0.00 | 2.17 |
2639 | 4477 | 2.951269 | TGGCAAATCTGAGGCAGTG | 58.049 | 52.632 | 0.00 | 0.00 | 35.21 | 3.66 |
2658 | 4496 | 5.234757 | GCAGTGCAAATGTTCAAAGAATTCA | 59.765 | 36.000 | 11.09 | 0.00 | 32.28 | 2.57 |
2678 | 4539 | 0.732538 | GCGGTGTGTTAATGCAAGCC | 60.733 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2728 | 4590 | 7.506971 | AGAATGAGATGCTGATTATCACTTGA | 58.493 | 34.615 | 0.00 | 0.00 | 0.00 | 3.02 |
2829 | 4693 | 8.408043 | TGAATTCATCTTGTCATTTTACAGGT | 57.592 | 30.769 | 3.38 | 0.00 | 0.00 | 4.00 |
2832 | 4696 | 7.681939 | TTCATCTTGTCATTTTACAGGTACC | 57.318 | 36.000 | 2.73 | 2.73 | 0.00 | 3.34 |
2906 | 4770 | 6.830873 | AAGCTAAGCACATTCAAAGATTCT | 57.169 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
2923 | 4800 | 2.315925 | TCTTCCATCAGATGAACGGC | 57.684 | 50.000 | 12.41 | 0.00 | 0.00 | 5.68 |
2932 | 4809 | 5.240183 | CCATCAGATGAACGGCTCAATTATT | 59.760 | 40.000 | 12.41 | 0.00 | 37.67 | 1.40 |
2964 | 4841 | 1.799933 | TGGGGGATGTTGCTTTTGTT | 58.200 | 45.000 | 0.00 | 0.00 | 0.00 | 2.83 |
2965 | 4842 | 1.415659 | TGGGGGATGTTGCTTTTGTTG | 59.584 | 47.619 | 0.00 | 0.00 | 0.00 | 3.33 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 0.035343 | GGTAGGTGGTGGCTTTCCTC | 60.035 | 60.000 | 0.00 | 0.00 | 0.00 | 3.71 |
2 | 3 | 0.608308 | GTGGTAGGTGGTGGCTTTCC | 60.608 | 60.000 | 0.00 | 0.00 | 0.00 | 3.13 |
3 | 4 | 0.608308 | GGTGGTAGGTGGTGGCTTTC | 60.608 | 60.000 | 0.00 | 0.00 | 0.00 | 2.62 |
4 | 5 | 1.357272 | TGGTGGTAGGTGGTGGCTTT | 61.357 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
6 | 7 | 1.541368 | ATGGTGGTAGGTGGTGGCT | 60.541 | 57.895 | 0.00 | 0.00 | 0.00 | 4.75 |
8 | 9 | 1.204786 | TGGATGGTGGTAGGTGGTGG | 61.205 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
9 | 10 | 0.918983 | ATGGATGGTGGTAGGTGGTG | 59.081 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
10 | 11 | 0.918983 | CATGGATGGTGGTAGGTGGT | 59.081 | 55.000 | 0.00 | 0.00 | 0.00 | 4.16 |
13 | 14 | 0.255890 | GTGCATGGATGGTGGTAGGT | 59.744 | 55.000 | 0.00 | 0.00 | 0.00 | 3.08 |
14 | 15 | 0.466189 | GGTGCATGGATGGTGGTAGG | 60.466 | 60.000 | 0.00 | 0.00 | 0.00 | 3.18 |
15 | 16 | 0.466189 | GGGTGCATGGATGGTGGTAG | 60.466 | 60.000 | 0.00 | 0.00 | 0.00 | 3.18 |
16 | 17 | 1.612513 | GGGTGCATGGATGGTGGTA | 59.387 | 57.895 | 0.00 | 0.00 | 0.00 | 3.25 |
17 | 18 | 2.360191 | GGGTGCATGGATGGTGGT | 59.640 | 61.111 | 0.00 | 0.00 | 0.00 | 4.16 |
18 | 19 | 2.442643 | GGGGTGCATGGATGGTGG | 60.443 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
19 | 20 | 1.755395 | CTGGGGTGCATGGATGGTG | 60.755 | 63.158 | 0.00 | 0.00 | 0.00 | 4.17 |
20 | 21 | 0.918799 | TACTGGGGTGCATGGATGGT | 60.919 | 55.000 | 0.00 | 0.00 | 0.00 | 3.55 |
21 | 22 | 0.466189 | GTACTGGGGTGCATGGATGG | 60.466 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
22 | 23 | 0.255604 | TGTACTGGGGTGCATGGATG | 59.744 | 55.000 | 0.00 | 0.00 | 33.35 | 3.51 |
23 | 24 | 0.998928 | TTGTACTGGGGTGCATGGAT | 59.001 | 50.000 | 0.00 | 0.00 | 37.84 | 3.41 |
24 | 25 | 0.774276 | TTTGTACTGGGGTGCATGGA | 59.226 | 50.000 | 0.00 | 0.00 | 37.84 | 3.41 |
25 | 26 | 1.272212 | GTTTTGTACTGGGGTGCATGG | 59.728 | 52.381 | 0.00 | 0.00 | 37.84 | 3.66 |
26 | 27 | 1.959985 | TGTTTTGTACTGGGGTGCATG | 59.040 | 47.619 | 0.00 | 0.00 | 37.84 | 4.06 |
27 | 28 | 1.960689 | GTGTTTTGTACTGGGGTGCAT | 59.039 | 47.619 | 0.00 | 0.00 | 37.84 | 3.96 |
28 | 29 | 1.394618 | GTGTTTTGTACTGGGGTGCA | 58.605 | 50.000 | 0.00 | 0.00 | 36.33 | 4.57 |
29 | 30 | 0.671796 | GGTGTTTTGTACTGGGGTGC | 59.328 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
30 | 31 | 2.060050 | TGGTGTTTTGTACTGGGGTG | 57.940 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
31 | 32 | 2.761767 | GTTTGGTGTTTTGTACTGGGGT | 59.238 | 45.455 | 0.00 | 0.00 | 0.00 | 4.95 |
32 | 33 | 2.761208 | TGTTTGGTGTTTTGTACTGGGG | 59.239 | 45.455 | 0.00 | 0.00 | 0.00 | 4.96 |
33 | 34 | 3.193691 | TGTGTTTGGTGTTTTGTACTGGG | 59.806 | 43.478 | 0.00 | 0.00 | 0.00 | 4.45 |
34 | 35 | 4.442375 | TGTGTTTGGTGTTTTGTACTGG | 57.558 | 40.909 | 0.00 | 0.00 | 0.00 | 4.00 |
35 | 36 | 5.344665 | CAGTTGTGTTTGGTGTTTTGTACTG | 59.655 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
36 | 37 | 5.465935 | CAGTTGTGTTTGGTGTTTTGTACT | 58.534 | 37.500 | 0.00 | 0.00 | 0.00 | 2.73 |
42 | 43 | 3.063485 | GTTGCAGTTGTGTTTGGTGTTT | 58.937 | 40.909 | 0.00 | 0.00 | 0.00 | 2.83 |
55 | 56 | 3.606846 | CGTTGATGTCGATTGTTGCAGTT | 60.607 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
79 | 80 | 2.809181 | CGCAAGACACTCAAGCGTA | 58.191 | 52.632 | 0.00 | 0.00 | 43.08 | 4.42 |
129 | 130 | 1.004918 | CGGTCTTCTTGCCGGTCTT | 60.005 | 57.895 | 1.90 | 0.00 | 43.85 | 3.01 |
130 | 131 | 2.657237 | CGGTCTTCTTGCCGGTCT | 59.343 | 61.111 | 1.90 | 0.00 | 43.85 | 3.85 |
135 | 136 | 1.244019 | AATGGTGCGGTCTTCTTGCC | 61.244 | 55.000 | 0.00 | 0.00 | 0.00 | 4.52 |
136 | 137 | 0.598065 | AAATGGTGCGGTCTTCTTGC | 59.402 | 50.000 | 0.00 | 0.00 | 0.00 | 4.01 |
137 | 138 | 1.068333 | CCAAATGGTGCGGTCTTCTTG | 60.068 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
138 | 139 | 1.247567 | CCAAATGGTGCGGTCTTCTT | 58.752 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
139 | 140 | 0.609131 | CCCAAATGGTGCGGTCTTCT | 60.609 | 55.000 | 0.00 | 0.00 | 0.00 | 2.85 |
153 | 154 | 2.746279 | TTCTTTCAGAGGTGCCCAAA | 57.254 | 45.000 | 0.00 | 0.00 | 0.00 | 3.28 |
154 | 155 | 2.693074 | GTTTTCTTTCAGAGGTGCCCAA | 59.307 | 45.455 | 0.00 | 0.00 | 0.00 | 4.12 |
165 | 166 | 3.078837 | GGATGGGCGTAGTTTTCTTTCA | 58.921 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
171 | 172 | 4.444449 | GGAAGATAGGATGGGCGTAGTTTT | 60.444 | 45.833 | 0.00 | 0.00 | 0.00 | 2.43 |
176 | 177 | 1.202964 | TCGGAAGATAGGATGGGCGTA | 60.203 | 52.381 | 0.00 | 0.00 | 33.31 | 4.42 |
194 | 195 | 1.998315 | CTCAGCAGTTTCACTCCATCG | 59.002 | 52.381 | 0.00 | 0.00 | 0.00 | 3.84 |
195 | 196 | 2.289945 | ACCTCAGCAGTTTCACTCCATC | 60.290 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
221 | 223 | 2.043953 | TCTAGCAGCAGGAGCCGA | 60.044 | 61.111 | 0.00 | 0.00 | 43.56 | 5.54 |
222 | 224 | 2.074230 | CTCTCTAGCAGCAGGAGCCG | 62.074 | 65.000 | 9.09 | 1.47 | 43.56 | 5.52 |
223 | 225 | 1.741525 | CTCTCTAGCAGCAGGAGCC | 59.258 | 63.158 | 9.09 | 0.00 | 43.56 | 4.70 |
232 | 234 | 1.377366 | CTTCGTCCGCCTCTCTAGCA | 61.377 | 60.000 | 0.00 | 0.00 | 0.00 | 3.49 |
235 | 237 | 0.464013 | CCTCTTCGTCCGCCTCTCTA | 60.464 | 60.000 | 0.00 | 0.00 | 0.00 | 2.43 |
253 | 255 | 0.741221 | GACAATGCGAGTCCCTGTCC | 60.741 | 60.000 | 0.00 | 0.00 | 32.10 | 4.02 |
259 | 261 | 1.639298 | GCTGGTGACAATGCGAGTCC | 61.639 | 60.000 | 0.00 | 0.00 | 42.06 | 3.85 |
268 | 270 | 3.069016 | TCTTCTCTTAACGCTGGTGACAA | 59.931 | 43.478 | 0.00 | 0.00 | 42.06 | 3.18 |
273 | 275 | 3.321111 | TCTTGTCTTCTCTTAACGCTGGT | 59.679 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
275 | 277 | 5.223382 | TCTTCTTGTCTTCTCTTAACGCTG | 58.777 | 41.667 | 0.00 | 0.00 | 0.00 | 5.18 |
276 | 278 | 5.455056 | TCTTCTTGTCTTCTCTTAACGCT | 57.545 | 39.130 | 0.00 | 0.00 | 0.00 | 5.07 |
282 | 284 | 6.405538 | GGATGTGATCTTCTTGTCTTCTCTT | 58.594 | 40.000 | 0.00 | 0.00 | 0.00 | 2.85 |
290 | 292 | 5.491982 | GTGTTAGGGATGTGATCTTCTTGT | 58.508 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
300 | 302 | 2.086869 | CAGCAAGGTGTTAGGGATGTG | 58.913 | 52.381 | 0.00 | 0.00 | 0.00 | 3.21 |
301 | 303 | 1.004745 | CCAGCAAGGTGTTAGGGATGT | 59.995 | 52.381 | 0.00 | 0.00 | 0.00 | 3.06 |
303 | 305 | 1.668826 | TCCAGCAAGGTGTTAGGGAT | 58.331 | 50.000 | 0.00 | 0.00 | 39.02 | 3.85 |
304 | 306 | 1.073284 | GTTCCAGCAAGGTGTTAGGGA | 59.927 | 52.381 | 0.00 | 0.00 | 39.02 | 4.20 |
305 | 307 | 1.534729 | GTTCCAGCAAGGTGTTAGGG | 58.465 | 55.000 | 0.00 | 0.00 | 39.02 | 3.53 |
306 | 308 | 1.156736 | CGTTCCAGCAAGGTGTTAGG | 58.843 | 55.000 | 0.00 | 0.00 | 39.02 | 2.69 |
307 | 309 | 1.156736 | CCGTTCCAGCAAGGTGTTAG | 58.843 | 55.000 | 0.00 | 0.00 | 39.02 | 2.34 |
308 | 310 | 0.470766 | ACCGTTCCAGCAAGGTGTTA | 59.529 | 50.000 | 0.00 | 0.00 | 39.02 | 2.41 |
309 | 311 | 0.395173 | AACCGTTCCAGCAAGGTGTT | 60.395 | 50.000 | 0.00 | 0.00 | 37.03 | 3.32 |
310 | 312 | 0.395173 | AAACCGTTCCAGCAAGGTGT | 60.395 | 50.000 | 0.00 | 0.00 | 37.03 | 4.16 |
311 | 313 | 0.310854 | GAAACCGTTCCAGCAAGGTG | 59.689 | 55.000 | 0.00 | 0.00 | 37.03 | 4.00 |
312 | 314 | 2.715536 | GAAACCGTTCCAGCAAGGT | 58.284 | 52.632 | 0.00 | 0.00 | 39.02 | 3.50 |
330 | 332 | 2.457366 | ACAGTTTAGTTCGCTCCTGG | 57.543 | 50.000 | 0.00 | 0.00 | 0.00 | 4.45 |
333 | 335 | 4.451096 | TGAATCAACAGTTTAGTTCGCTCC | 59.549 | 41.667 | 0.00 | 0.00 | 0.00 | 4.70 |
341 | 343 | 8.344831 | TCAAGTTCATGTGAATCAACAGTTTAG | 58.655 | 33.333 | 0.00 | 0.00 | 36.33 | 1.85 |
345 | 347 | 6.698008 | TTCAAGTTCATGTGAATCAACAGT | 57.302 | 33.333 | 0.00 | 0.00 | 36.33 | 3.55 |
347 | 349 | 7.099266 | ACTTTCAAGTTCATGTGAATCAACA | 57.901 | 32.000 | 0.00 | 0.00 | 35.21 | 3.33 |
363 | 365 | 9.993881 | CGCTTTTATTTTTCATGTACTTTCAAG | 57.006 | 29.630 | 0.00 | 0.00 | 0.00 | 3.02 |
454 | 457 | 5.531659 | TCCGCTAAACCTCATTGTACAAAAA | 59.468 | 36.000 | 13.23 | 2.77 | 0.00 | 1.94 |
455 | 458 | 5.064558 | TCCGCTAAACCTCATTGTACAAAA | 58.935 | 37.500 | 13.23 | 3.15 | 0.00 | 2.44 |
456 | 459 | 4.643463 | TCCGCTAAACCTCATTGTACAAA | 58.357 | 39.130 | 13.23 | 0.00 | 0.00 | 2.83 |
457 | 460 | 4.274602 | TCCGCTAAACCTCATTGTACAA | 57.725 | 40.909 | 11.41 | 11.41 | 0.00 | 2.41 |
463 | 466 | 3.864789 | ATCCATCCGCTAAACCTCATT | 57.135 | 42.857 | 0.00 | 0.00 | 0.00 | 2.57 |
484 | 487 | 7.513856 | ACTTTGCACCCTATTTTGGTAAAAAT | 58.486 | 30.769 | 0.00 | 2.36 | 45.70 | 1.82 |
521 | 528 | 2.028203 | CGGGATTGGAACCTTTGCATTT | 60.028 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
526 | 533 | 1.904287 | TCACGGGATTGGAACCTTTG | 58.096 | 50.000 | 0.00 | 0.00 | 0.00 | 2.77 |
527 | 534 | 2.668144 | TTCACGGGATTGGAACCTTT | 57.332 | 45.000 | 0.00 | 0.00 | 0.00 | 3.11 |
529 | 536 | 1.633432 | TGATTCACGGGATTGGAACCT | 59.367 | 47.619 | 0.00 | 0.00 | 0.00 | 3.50 |
532 | 539 | 5.011533 | ACAAATTTGATTCACGGGATTGGAA | 59.988 | 36.000 | 24.64 | 0.00 | 0.00 | 3.53 |
534 | 541 | 4.626604 | CACAAATTTGATTCACGGGATTGG | 59.373 | 41.667 | 24.64 | 0.00 | 0.00 | 3.16 |
536 | 543 | 5.010516 | TGTCACAAATTTGATTCACGGGATT | 59.989 | 36.000 | 24.64 | 0.00 | 0.00 | 3.01 |
537 | 544 | 4.522405 | TGTCACAAATTTGATTCACGGGAT | 59.478 | 37.500 | 24.64 | 0.00 | 0.00 | 3.85 |
538 | 545 | 3.885901 | TGTCACAAATTTGATTCACGGGA | 59.114 | 39.130 | 24.64 | 0.00 | 0.00 | 5.14 |
540 | 547 | 6.035435 | TGTTTTGTCACAAATTTGATTCACGG | 59.965 | 34.615 | 24.64 | 5.19 | 0.00 | 4.94 |
541 | 548 | 6.987223 | TGTTTTGTCACAAATTTGATTCACG | 58.013 | 32.000 | 24.64 | 5.82 | 0.00 | 4.35 |
542 | 549 | 8.819974 | AGATGTTTTGTCACAAATTTGATTCAC | 58.180 | 29.630 | 24.64 | 13.93 | 0.00 | 3.18 |
555 | 591 | 8.889000 | GTTCATTAACGTAAGATGTTTTGTCAC | 58.111 | 33.333 | 0.00 | 0.00 | 43.62 | 3.67 |
559 | 648 | 9.318041 | CTCTGTTCATTAACGTAAGATGTTTTG | 57.682 | 33.333 | 0.00 | 0.00 | 38.53 | 2.44 |
564 | 653 | 9.318041 | CAAAACTCTGTTCATTAACGTAAGATG | 57.682 | 33.333 | 0.00 | 0.00 | 38.53 | 2.90 |
565 | 654 | 8.504005 | CCAAAACTCTGTTCATTAACGTAAGAT | 58.496 | 33.333 | 0.00 | 0.00 | 38.53 | 2.40 |
622 | 717 | 7.557719 | TGATTTGGATCAGAGAAAGTATTTCCC | 59.442 | 37.037 | 0.00 | 0.00 | 45.25 | 3.97 |
623 | 718 | 8.511604 | TGATTTGGATCAGAGAAAGTATTTCC | 57.488 | 34.615 | 0.00 | 0.00 | 45.25 | 3.13 |
627 | 722 | 9.690913 | TCAATTGATTTGGATCAGAGAAAGTAT | 57.309 | 29.630 | 3.38 | 0.00 | 42.90 | 2.12 |
628 | 723 | 8.950210 | GTCAATTGATTTGGATCAGAGAAAGTA | 58.050 | 33.333 | 12.12 | 0.00 | 42.90 | 2.24 |
629 | 724 | 7.361542 | CGTCAATTGATTTGGATCAGAGAAAGT | 60.362 | 37.037 | 12.12 | 0.00 | 42.90 | 2.66 |
630 | 725 | 6.965500 | CGTCAATTGATTTGGATCAGAGAAAG | 59.035 | 38.462 | 12.12 | 0.00 | 42.90 | 2.62 |
631 | 726 | 6.623549 | GCGTCAATTGATTTGGATCAGAGAAA | 60.624 | 38.462 | 12.12 | 0.00 | 42.90 | 2.52 |
632 | 727 | 5.163723 | GCGTCAATTGATTTGGATCAGAGAA | 60.164 | 40.000 | 12.12 | 0.00 | 42.90 | 2.87 |
633 | 728 | 4.333649 | GCGTCAATTGATTTGGATCAGAGA | 59.666 | 41.667 | 12.12 | 0.00 | 42.90 | 3.10 |
634 | 729 | 4.095334 | TGCGTCAATTGATTTGGATCAGAG | 59.905 | 41.667 | 12.12 | 0.00 | 42.90 | 3.35 |
635 | 730 | 4.009002 | TGCGTCAATTGATTTGGATCAGA | 58.991 | 39.130 | 12.12 | 0.00 | 42.90 | 3.27 |
636 | 731 | 4.348656 | CTGCGTCAATTGATTTGGATCAG | 58.651 | 43.478 | 12.12 | 7.54 | 42.90 | 2.90 |
637 | 732 | 3.427909 | GCTGCGTCAATTGATTTGGATCA | 60.428 | 43.478 | 12.12 | 2.02 | 40.46 | 2.92 |
638 | 733 | 3.111098 | GCTGCGTCAATTGATTTGGATC | 58.889 | 45.455 | 12.12 | 0.00 | 35.92 | 3.36 |
639 | 734 | 2.159198 | GGCTGCGTCAATTGATTTGGAT | 60.159 | 45.455 | 12.12 | 0.00 | 35.92 | 3.41 |
640 | 735 | 1.202114 | GGCTGCGTCAATTGATTTGGA | 59.798 | 47.619 | 12.12 | 5.47 | 35.92 | 3.53 |
641 | 736 | 1.203052 | AGGCTGCGTCAATTGATTTGG | 59.797 | 47.619 | 12.12 | 4.48 | 35.92 | 3.28 |
642 | 737 | 2.642139 | AGGCTGCGTCAATTGATTTG | 57.358 | 45.000 | 12.12 | 6.20 | 36.61 | 2.32 |
643 | 738 | 4.989279 | AATAGGCTGCGTCAATTGATTT | 57.011 | 36.364 | 12.12 | 0.00 | 0.00 | 2.17 |
644 | 739 | 5.368145 | TCTAATAGGCTGCGTCAATTGATT | 58.632 | 37.500 | 12.12 | 0.98 | 0.00 | 2.57 |
645 | 740 | 4.960938 | TCTAATAGGCTGCGTCAATTGAT | 58.039 | 39.130 | 12.12 | 0.00 | 0.00 | 2.57 |
646 | 741 | 4.400529 | TCTAATAGGCTGCGTCAATTGA | 57.599 | 40.909 | 3.38 | 3.38 | 0.00 | 2.57 |
647 | 742 | 4.143242 | CGATCTAATAGGCTGCGTCAATTG | 60.143 | 45.833 | 0.00 | 0.00 | 0.00 | 2.32 |
648 | 743 | 3.990469 | CGATCTAATAGGCTGCGTCAATT | 59.010 | 43.478 | 0.00 | 0.00 | 0.00 | 2.32 |
649 | 744 | 3.579709 | CGATCTAATAGGCTGCGTCAAT | 58.420 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
650 | 745 | 2.288213 | CCGATCTAATAGGCTGCGTCAA | 60.288 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
651 | 746 | 1.269723 | CCGATCTAATAGGCTGCGTCA | 59.730 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
652 | 747 | 1.540267 | TCCGATCTAATAGGCTGCGTC | 59.460 | 52.381 | 0.00 | 0.00 | 0.00 | 5.19 |
653 | 748 | 1.542030 | CTCCGATCTAATAGGCTGCGT | 59.458 | 52.381 | 0.00 | 0.00 | 0.00 | 5.24 |
654 | 749 | 1.135257 | CCTCCGATCTAATAGGCTGCG | 60.135 | 57.143 | 0.00 | 0.00 | 0.00 | 5.18 |
655 | 750 | 1.205893 | CCCTCCGATCTAATAGGCTGC | 59.794 | 57.143 | 0.00 | 0.00 | 0.00 | 5.25 |
656 | 751 | 2.757868 | CTCCCTCCGATCTAATAGGCTG | 59.242 | 54.545 | 0.00 | 0.00 | 0.00 | 4.85 |
657 | 752 | 2.380590 | ACTCCCTCCGATCTAATAGGCT | 59.619 | 50.000 | 0.00 | 0.00 | 0.00 | 4.58 |
658 | 753 | 2.810164 | ACTCCCTCCGATCTAATAGGC | 58.190 | 52.381 | 0.00 | 0.00 | 0.00 | 3.93 |
659 | 754 | 8.591114 | TTTTATACTCCCTCCGATCTAATAGG | 57.409 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
662 | 757 | 9.945904 | GAAATTTTATACTCCCTCCGATCTAAT | 57.054 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
663 | 758 | 9.155785 | AGAAATTTTATACTCCCTCCGATCTAA | 57.844 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
664 | 759 | 8.722622 | AGAAATTTTATACTCCCTCCGATCTA | 57.277 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
665 | 760 | 7.619512 | AGAAATTTTATACTCCCTCCGATCT | 57.380 | 36.000 | 0.00 | 0.00 | 0.00 | 2.75 |
683 | 778 | 4.935808 | AGGACGCTTCGATACAAAGAAATT | 59.064 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
689 | 784 | 4.177165 | TGTAAGGACGCTTCGATACAAA | 57.823 | 40.909 | 4.81 | 0.00 | 0.00 | 2.83 |
693 | 788 | 4.707030 | TCTTTGTAAGGACGCTTCGATA | 57.293 | 40.909 | 0.00 | 0.00 | 0.00 | 2.92 |
697 | 792 | 4.159120 | GCAATTCTTTGTAAGGACGCTTC | 58.841 | 43.478 | 0.00 | 0.00 | 35.17 | 3.86 |
700 | 795 | 3.552604 | TGCAATTCTTTGTAAGGACGC | 57.447 | 42.857 | 0.00 | 0.00 | 35.17 | 5.19 |
701 | 796 | 5.519722 | AGTTTGCAATTCTTTGTAAGGACG | 58.480 | 37.500 | 0.00 | 0.00 | 38.43 | 4.79 |
702 | 797 | 7.649057 | AGTAGTTTGCAATTCTTTGTAAGGAC | 58.351 | 34.615 | 0.00 | 0.00 | 38.43 | 3.85 |
703 | 798 | 7.817418 | AGTAGTTTGCAATTCTTTGTAAGGA | 57.183 | 32.000 | 0.00 | 0.00 | 38.43 | 3.36 |
706 | 801 | 8.232913 | AGGAAGTAGTTTGCAATTCTTTGTAA | 57.767 | 30.769 | 0.00 | 0.00 | 35.92 | 2.41 |
707 | 802 | 7.040686 | GGAGGAAGTAGTTTGCAATTCTTTGTA | 60.041 | 37.037 | 0.00 | 0.00 | 35.17 | 2.41 |
709 | 804 | 6.015940 | AGGAGGAAGTAGTTTGCAATTCTTTG | 60.016 | 38.462 | 0.00 | 0.00 | 35.85 | 2.77 |
725 | 820 | 8.811994 | GCTCTTATATTATGAGAAGGAGGAAGT | 58.188 | 37.037 | 0.47 | 0.00 | 33.20 | 3.01 |
726 | 821 | 7.973388 | CGCTCTTATATTATGAGAAGGAGGAAG | 59.027 | 40.741 | 0.47 | 0.00 | 33.20 | 3.46 |
727 | 822 | 7.451877 | ACGCTCTTATATTATGAGAAGGAGGAA | 59.548 | 37.037 | 0.47 | 0.00 | 33.20 | 3.36 |
728 | 823 | 6.948886 | ACGCTCTTATATTATGAGAAGGAGGA | 59.051 | 38.462 | 0.47 | 0.00 | 33.20 | 3.71 |
729 | 824 | 7.164230 | ACGCTCTTATATTATGAGAAGGAGG | 57.836 | 40.000 | 0.47 | 0.00 | 33.20 | 4.30 |
730 | 825 | 9.482627 | AAAACGCTCTTATATTATGAGAAGGAG | 57.517 | 33.333 | 0.47 | 0.00 | 33.20 | 3.69 |
731 | 826 | 9.832445 | AAAAACGCTCTTATATTATGAGAAGGA | 57.168 | 29.630 | 0.47 | 0.00 | 33.20 | 3.36 |
784 | 879 | 9.683870 | CTCCCTCCGTCTTAGTATAATATAAGT | 57.316 | 37.037 | 0.00 | 0.00 | 32.09 | 2.24 |
785 | 880 | 9.683870 | ACTCCCTCCGTCTTAGTATAATATAAG | 57.316 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
790 | 885 | 8.953223 | ATTTACTCCCTCCGTCTTAGTATAAT | 57.047 | 34.615 | 0.00 | 0.00 | 0.00 | 1.28 |
791 | 886 | 8.773033 | AATTTACTCCCTCCGTCTTAGTATAA | 57.227 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
792 | 887 | 8.773033 | AAATTTACTCCCTCCGTCTTAGTATA | 57.227 | 34.615 | 0.00 | 0.00 | 0.00 | 1.47 |
793 | 888 | 7.564292 | AGAAATTTACTCCCTCCGTCTTAGTAT | 59.436 | 37.037 | 0.00 | 0.00 | 0.00 | 2.12 |
794 | 889 | 6.894103 | AGAAATTTACTCCCTCCGTCTTAGTA | 59.106 | 38.462 | 0.00 | 0.00 | 0.00 | 1.82 |
795 | 890 | 5.720520 | AGAAATTTACTCCCTCCGTCTTAGT | 59.279 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
796 | 891 | 6.223351 | AGAAATTTACTCCCTCCGTCTTAG | 57.777 | 41.667 | 0.00 | 0.00 | 0.00 | 2.18 |
797 | 892 | 7.722949 | TTAGAAATTTACTCCCTCCGTCTTA | 57.277 | 36.000 | 0.00 | 0.00 | 0.00 | 2.10 |
798 | 893 | 6.616237 | TTAGAAATTTACTCCCTCCGTCTT | 57.384 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
799 | 894 | 6.616237 | TTTAGAAATTTACTCCCTCCGTCT | 57.384 | 37.500 | 0.00 | 0.00 | 0.00 | 4.18 |
800 | 895 | 7.860918 | AATTTAGAAATTTACTCCCTCCGTC | 57.139 | 36.000 | 0.00 | 0.00 | 35.16 | 4.79 |
801 | 896 | 8.520351 | CAAAATTTAGAAATTTACTCCCTCCGT | 58.480 | 33.333 | 12.18 | 0.00 | 45.16 | 4.69 |
802 | 897 | 8.736244 | TCAAAATTTAGAAATTTACTCCCTCCG | 58.264 | 33.333 | 12.18 | 0.00 | 45.16 | 4.63 |
848 | 943 | 1.342374 | GGGCAAGGTTGGATTGGATCT | 60.342 | 52.381 | 0.00 | 0.00 | 0.00 | 2.75 |
849 | 944 | 1.114627 | GGGCAAGGTTGGATTGGATC | 58.885 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
850 | 945 | 0.325577 | GGGGCAAGGTTGGATTGGAT | 60.326 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
851 | 946 | 1.078347 | GGGGCAAGGTTGGATTGGA | 59.922 | 57.895 | 0.00 | 0.00 | 0.00 | 3.53 |
853 | 948 | 0.826062 | GATGGGGCAAGGTTGGATTG | 59.174 | 55.000 | 0.00 | 0.00 | 0.00 | 2.67 |
880 | 996 | 3.159213 | TGCATTTCTGTGTCCCTGATT | 57.841 | 42.857 | 0.00 | 0.00 | 0.00 | 2.57 |
881 | 997 | 2.885135 | TGCATTTCTGTGTCCCTGAT | 57.115 | 45.000 | 0.00 | 0.00 | 0.00 | 2.90 |
883 | 999 | 2.227388 | GACTTGCATTTCTGTGTCCCTG | 59.773 | 50.000 | 0.00 | 0.00 | 0.00 | 4.45 |
885 | 1001 | 1.197721 | CGACTTGCATTTCTGTGTCCC | 59.802 | 52.381 | 0.00 | 0.00 | 0.00 | 4.46 |
891 | 1007 | 2.159920 | CGTGAGTCGACTTGCATTTCTG | 60.160 | 50.000 | 21.08 | 0.00 | 42.86 | 3.02 |
902 | 1018 | 3.453465 | GCAAGAGCGTGAGTCGAC | 58.547 | 61.111 | 7.70 | 7.70 | 42.86 | 4.20 |
911 | 1027 | 1.964290 | GCTACTGCACAGCAAGAGCG | 61.964 | 60.000 | 10.08 | 0.00 | 41.99 | 5.03 |
925 | 2699 | 0.457851 | GGCGAGTGTCAGATGCTACT | 59.542 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
944 | 2718 | 0.635009 | TAGGAGGTGGGTAGGAGGTG | 59.365 | 60.000 | 0.00 | 0.00 | 0.00 | 4.00 |
946 | 2720 | 1.203199 | GGATAGGAGGTGGGTAGGAGG | 60.203 | 61.905 | 0.00 | 0.00 | 0.00 | 4.30 |
960 | 2734 | 1.047034 | ACGGACGGAAAGGGGATAGG | 61.047 | 60.000 | 0.00 | 0.00 | 0.00 | 2.57 |
961 | 2735 | 0.388294 | GACGGACGGAAAGGGGATAG | 59.612 | 60.000 | 0.00 | 0.00 | 0.00 | 2.08 |
962 | 2736 | 0.032813 | AGACGGACGGAAAGGGGATA | 60.033 | 55.000 | 0.00 | 0.00 | 0.00 | 2.59 |
963 | 2737 | 0.032813 | TAGACGGACGGAAAGGGGAT | 60.033 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
964 | 2738 | 0.682209 | CTAGACGGACGGAAAGGGGA | 60.682 | 60.000 | 0.00 | 0.00 | 0.00 | 4.81 |
967 | 2741 | 0.455005 | GACCTAGACGGACGGAAAGG | 59.545 | 60.000 | 0.00 | 2.13 | 36.31 | 3.11 |
968 | 2742 | 1.132643 | CAGACCTAGACGGACGGAAAG | 59.867 | 57.143 | 0.00 | 0.00 | 36.31 | 2.62 |
969 | 2743 | 1.171308 | CAGACCTAGACGGACGGAAA | 58.829 | 55.000 | 0.00 | 0.00 | 36.31 | 3.13 |
970 | 2744 | 0.679002 | CCAGACCTAGACGGACGGAA | 60.679 | 60.000 | 0.00 | 0.00 | 36.31 | 4.30 |
1011 | 2788 | 4.747529 | GGCCCGTACACCGTCACC | 62.748 | 72.222 | 0.00 | 0.00 | 33.66 | 4.02 |
1229 | 3018 | 3.257393 | AGATGTGAAGAAACTAGCTGCG | 58.743 | 45.455 | 0.00 | 0.00 | 0.00 | 5.18 |
1252 | 3041 | 4.362279 | TGCAATTGACAGAGAAGCAAAAC | 58.638 | 39.130 | 10.34 | 0.00 | 0.00 | 2.43 |
1262 | 3051 | 1.689984 | TGGCACTTGCAATTGACAGA | 58.310 | 45.000 | 20.45 | 0.00 | 44.36 | 3.41 |
1265 | 3054 | 1.987770 | CGAATGGCACTTGCAATTGAC | 59.012 | 47.619 | 19.89 | 17.69 | 44.25 | 3.18 |
1357 | 3149 | 4.789012 | ACATGCCAACACTGGAATTTAG | 57.211 | 40.909 | 0.00 | 0.00 | 46.92 | 1.85 |
1396 | 3188 | 1.812571 | CATTCAGGGGAAAGTCAACCG | 59.187 | 52.381 | 0.00 | 0.00 | 36.43 | 4.44 |
1581 | 3410 | 2.886610 | CATTGCTCAATGGCGGCA | 59.113 | 55.556 | 16.34 | 16.34 | 43.25 | 5.69 |
1590 | 3419 | 2.820178 | TCAGACTCTACCCATTGCTCA | 58.180 | 47.619 | 0.00 | 0.00 | 0.00 | 4.26 |
1632 | 3461 | 1.669999 | GGAATGCGATGGCCAAGCTT | 61.670 | 55.000 | 28.95 | 22.62 | 38.85 | 3.74 |
1722 | 3551 | 3.923864 | ACGTCGAGCACCTTGGCA | 61.924 | 61.111 | 0.00 | 0.00 | 35.83 | 4.92 |
1830 | 3659 | 1.597854 | CTTGCCGGTCTTGCTCACA | 60.598 | 57.895 | 1.90 | 0.00 | 0.00 | 3.58 |
1905 | 3734 | 1.815421 | CTTCTTCCATGACGGGCGG | 60.815 | 63.158 | 0.00 | 0.00 | 34.36 | 6.13 |
1908 | 3737 | 1.271379 | ACAACCTTCTTCCATGACGGG | 60.271 | 52.381 | 0.00 | 0.00 | 34.36 | 5.28 |
1984 | 3814 | 4.400961 | ACCAGAAGCTGCTCGGCC | 62.401 | 66.667 | 1.00 | 0.00 | 0.00 | 6.13 |
2034 | 3864 | 7.594758 | CACAACACAATTAACATTTAGGAGTGG | 59.405 | 37.037 | 0.00 | 0.00 | 0.00 | 4.00 |
2176 | 4008 | 0.617935 | TGGGATGCAATCGAGTTCCA | 59.382 | 50.000 | 4.62 | 0.00 | 46.86 | 3.53 |
2257 | 4089 | 7.397892 | TCAGTAGGTAAAGAGATTGTCAGAG | 57.602 | 40.000 | 0.00 | 0.00 | 0.00 | 3.35 |
2288 | 4120 | 6.381133 | ACTTCAATAATTTGGAATGGAGGGAC | 59.619 | 38.462 | 0.00 | 0.00 | 33.44 | 4.46 |
2317 | 4150 | 8.855110 | TGAATAAATTTGACTTAGGACAAAGCA | 58.145 | 29.630 | 8.28 | 0.00 | 39.50 | 3.91 |
2342 | 4175 | 8.925161 | TTTTTCTACAGAATTGGTCAAACTTG | 57.075 | 30.769 | 0.00 | 0.00 | 33.54 | 3.16 |
2355 | 4188 | 9.719355 | TGTAGATAAGCACATTTTTCTACAGAA | 57.281 | 29.630 | 12.08 | 0.00 | 38.81 | 3.02 |
2428 | 4264 | 5.108187 | AGATGTGTCATCTTGCATTACCT | 57.892 | 39.130 | 6.45 | 0.00 | 0.00 | 3.08 |
2588 | 4426 | 5.652744 | TGTTTCTCAACTTTTCTCGTAGC | 57.347 | 39.130 | 0.00 | 0.00 | 33.58 | 3.58 |
2629 | 4467 | 1.610038 | TGAACATTTGCACTGCCTCAG | 59.390 | 47.619 | 0.00 | 0.00 | 37.52 | 3.35 |
2638 | 4476 | 4.445052 | CGCTGAATTCTTTGAACATTTGCA | 59.555 | 37.500 | 7.05 | 0.00 | 0.00 | 4.08 |
2639 | 4477 | 4.143263 | CCGCTGAATTCTTTGAACATTTGC | 60.143 | 41.667 | 7.05 | 0.00 | 0.00 | 3.68 |
2658 | 4496 | 0.240945 | GCTTGCATTAACACACCGCT | 59.759 | 50.000 | 0.00 | 0.00 | 0.00 | 5.52 |
2728 | 4590 | 2.662866 | AGCTGCCAATATGCATTCACT | 58.337 | 42.857 | 3.54 | 0.00 | 41.16 | 3.41 |
2787 | 4649 | 8.712285 | ATGAATTCATGCTTAAGTTTTCCATG | 57.288 | 30.769 | 20.11 | 11.62 | 34.83 | 3.66 |
2791 | 4653 | 9.415544 | ACAAGATGAATTCATGCTTAAGTTTTC | 57.584 | 29.630 | 25.37 | 7.36 | 36.57 | 2.29 |
2906 | 4770 | 1.554617 | TGAGCCGTTCATCTGATGGAA | 59.445 | 47.619 | 17.06 | 7.87 | 0.00 | 3.53 |
2923 | 4800 | 6.883217 | CCCATATGGAGTCAGGAATAATTGAG | 59.117 | 42.308 | 24.00 | 0.00 | 37.39 | 3.02 |
2932 | 4809 | 0.948816 | TCCCCCATATGGAGTCAGGA | 59.051 | 55.000 | 24.00 | 16.30 | 37.39 | 3.86 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.