Multiple sequence alignment - TraesCS4B01G330500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G330500 chr4B 100.000 4119 0 0 1 4119 621441898 621437780 0.000000e+00 7607.0
1 TraesCS4B01G330500 chr4B 98.540 137 2 0 1 137 513587980 513588116 4.110000e-60 243.0
2 TraesCS4B01G330500 chr4B 96.429 140 5 0 1 140 507914428 507914289 8.900000e-57 231.0
3 TraesCS4B01G330500 chr4B 96.377 138 5 0 1 138 405855834 405855971 1.150000e-55 228.0
4 TraesCS4B01G330500 chr4D 93.654 3388 135 19 760 4075 486775800 486772421 0.000000e+00 4992.0
5 TraesCS4B01G330500 chr4D 84.211 76 6 6 3644 3717 438107576 438107505 7.390000e-08 69.4
6 TraesCS4B01G330500 chr5A 93.580 1542 59 11 914 2451 667107177 667105672 0.000000e+00 2263.0
7 TraesCS4B01G330500 chr5A 90.045 1326 64 36 2444 3733 667105647 667104354 0.000000e+00 1655.0
8 TraesCS4B01G330500 chr5A 85.324 293 41 2 152 442 29724235 29723943 6.690000e-78 302.0
9 TraesCS4B01G330500 chr5A 88.936 235 24 2 3841 4075 667104111 667103879 5.210000e-74 289.0
10 TraesCS4B01G330500 chr5A 96.377 138 5 0 1 138 358172937 358173074 1.150000e-55 228.0
11 TraesCS4B01G330500 chr5A 91.743 109 5 2 753 857 667107471 667107363 9.230000e-32 148.0
12 TraesCS4B01G330500 chr2D 83.101 645 73 16 138 747 8390759 8390116 4.650000e-154 555.0
13 TraesCS4B01G330500 chr2D 82.721 544 71 13 148 682 554074037 554073508 2.900000e-126 462.0
14 TraesCS4B01G330500 chr2D 91.304 46 2 2 2838 2882 598728664 598728620 1.240000e-05 62.1
15 TraesCS4B01G330500 chr7D 83.762 505 51 7 138 613 4370702 4370200 2.260000e-122 449.0
16 TraesCS4B01G330500 chr7D 85.284 299 42 2 148 444 593539670 593539372 1.440000e-79 307.0
17 TraesCS4B01G330500 chr7D 91.837 49 4 0 2829 2877 446996541 446996493 7.390000e-08 69.4
18 TraesCS4B01G330500 chr5D 84.478 393 43 10 138 514 485378033 485377643 5.030000e-99 372.0
19 TraesCS4B01G330500 chr5D 85.761 309 36 3 138 444 445644604 445644906 1.850000e-83 320.0
20 TraesCS4B01G330500 chr5D 83.030 165 20 5 588 747 402975072 402975233 4.290000e-30 143.0
21 TraesCS4B01G330500 chr1D 86.957 299 37 2 148 444 73314606 73314904 6.600000e-88 335.0
22 TraesCS4B01G330500 chr3A 86.230 305 35 6 142 444 213100718 213101017 1.430000e-84 324.0
23 TraesCS4B01G330500 chr3A 76.923 195 37 6 559 749 20911218 20911408 2.030000e-18 104.0
24 TraesCS4B01G330500 chr7B 96.403 139 5 0 1 139 496407504 496407366 3.200000e-56 230.0
25 TraesCS4B01G330500 chr7B 96.350 137 5 0 1 137 78944049 78943913 4.140000e-55 226.0
26 TraesCS4B01G330500 chr7B 91.837 49 4 0 2829 2877 464343647 464343599 7.390000e-08 69.4
27 TraesCS4B01G330500 chr3B 96.377 138 5 0 1 138 275015002 275015139 1.150000e-55 228.0
28 TraesCS4B01G330500 chr3B 96.350 137 5 0 1 137 87950909 87951045 4.140000e-55 226.0
29 TraesCS4B01G330500 chr6B 95.035 141 6 1 1 140 368011669 368011529 1.930000e-53 220.0
30 TraesCS4B01G330500 chr2B 86.420 81 9 2 2796 2875 27736262 27736183 2.040000e-13 87.9
31 TraesCS4B01G330500 chr2B 85.366 82 10 2 2802 2882 727221526 727221446 2.640000e-12 84.2
32 TraesCS4B01G330500 chr2B 97.222 36 1 0 2843 2878 17439052 17439017 1.240000e-05 62.1
33 TraesCS4B01G330500 chr7A 91.837 49 4 0 2829 2877 498229490 498229442 7.390000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G330500 chr4B 621437780 621441898 4118 True 7607.00 7607 100.000 1 4119 1 chr4B.!!$R2 4118
1 TraesCS4B01G330500 chr4D 486772421 486775800 3379 True 4992.00 4992 93.654 760 4075 1 chr4D.!!$R2 3315
2 TraesCS4B01G330500 chr5A 667103879 667107471 3592 True 1088.75 2263 91.076 753 4075 4 chr5A.!!$R2 3322
3 TraesCS4B01G330500 chr2D 8390116 8390759 643 True 555.00 555 83.101 138 747 1 chr2D.!!$R1 609
4 TraesCS4B01G330500 chr2D 554073508 554074037 529 True 462.00 462 82.721 148 682 1 chr2D.!!$R2 534
5 TraesCS4B01G330500 chr7D 4370200 4370702 502 True 449.00 449 83.762 138 613 1 chr7D.!!$R1 475

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
658 660 0.179059 TTTCAACAGTCGCTGGAGCA 60.179 50.0 10.80 0.00 42.21 4.26 F
659 661 0.179059 TTCAACAGTCGCTGGAGCAA 60.179 50.0 10.80 0.00 42.21 3.91 F
709 711 0.248866 CGCGTGCTTCAAAAGGGTTT 60.249 50.0 0.00 0.00 0.00 3.27 F
719 721 0.319211 AAAAGGGTTTTTAGCGCGCC 60.319 50.0 30.33 11.31 34.81 6.53 F
746 748 0.403271 ACTTGGCTGTTGGATGCTCT 59.597 50.0 0.00 0.00 0.00 4.09 F
894 930 0.971447 AGTGAGTTCCTAGCGGGGTC 60.971 60.0 0.00 0.00 35.33 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2175 2323 1.138247 CGTACGTACCCAGAGCACC 59.862 63.158 19.67 0.00 0.00 5.01 R
2234 2382 3.958704 TGTGCGTGTTAATTTGGTGAAG 58.041 40.909 0.00 0.00 0.00 3.02 R
2251 2399 4.873817 TGCCATGCTGATAATTTATGTGC 58.126 39.130 0.00 0.00 0.00 4.57 R
2367 2591 5.469084 ACGCTAGCTAGCTTTTTAAAAGTGT 59.531 36.000 36.02 20.50 46.85 3.55 R
2743 3003 2.126734 CCGTCCACGTACGTGTCC 60.127 66.667 37.86 28.07 44.02 4.02 R
3153 3422 0.323725 TGTAGTAGGGACGGTGGGTC 60.324 60.000 0.00 0.00 45.31 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.109903 CAAACTAACCCCTCTGATTCTACG 58.890 45.833 0.00 0.00 0.00 3.51
24 25 4.246712 ACTAACCCCTCTGATTCTACGA 57.753 45.455 0.00 0.00 0.00 3.43
25 26 4.805744 ACTAACCCCTCTGATTCTACGAT 58.194 43.478 0.00 0.00 0.00 3.73
26 27 5.209659 ACTAACCCCTCTGATTCTACGATT 58.790 41.667 0.00 0.00 0.00 3.34
27 28 5.661759 ACTAACCCCTCTGATTCTACGATTT 59.338 40.000 0.00 0.00 0.00 2.17
28 29 5.437191 AACCCCTCTGATTCTACGATTTT 57.563 39.130 0.00 0.00 0.00 1.82
29 30 6.555463 AACCCCTCTGATTCTACGATTTTA 57.445 37.500 0.00 0.00 0.00 1.52
30 31 5.915175 ACCCCTCTGATTCTACGATTTTAC 58.085 41.667 0.00 0.00 0.00 2.01
31 32 5.661759 ACCCCTCTGATTCTACGATTTTACT 59.338 40.000 0.00 0.00 0.00 2.24
32 33 6.156429 ACCCCTCTGATTCTACGATTTTACTT 59.844 38.462 0.00 0.00 0.00 2.24
33 34 6.702282 CCCCTCTGATTCTACGATTTTACTTC 59.298 42.308 0.00 0.00 0.00 3.01
34 35 7.265673 CCCTCTGATTCTACGATTTTACTTCA 58.734 38.462 0.00 0.00 0.00 3.02
35 36 7.928706 CCCTCTGATTCTACGATTTTACTTCAT 59.071 37.037 0.00 0.00 0.00 2.57
36 37 9.967346 CCTCTGATTCTACGATTTTACTTCATA 57.033 33.333 0.00 0.00 0.00 2.15
47 48 9.798994 ACGATTTTACTTCATAGAATCTACGTT 57.201 29.630 0.00 0.00 33.91 3.99
67 68 5.841957 GTTCCTACGACCCTAATAGTGAA 57.158 43.478 0.00 0.00 0.00 3.18
68 69 5.829829 GTTCCTACGACCCTAATAGTGAAG 58.170 45.833 0.00 0.00 0.00 3.02
69 70 5.378230 TCCTACGACCCTAATAGTGAAGA 57.622 43.478 0.00 0.00 0.00 2.87
70 71 5.950023 TCCTACGACCCTAATAGTGAAGAT 58.050 41.667 0.00 0.00 0.00 2.40
71 72 6.371278 TCCTACGACCCTAATAGTGAAGATT 58.629 40.000 0.00 0.00 0.00 2.40
72 73 6.489361 TCCTACGACCCTAATAGTGAAGATTC 59.511 42.308 0.00 0.00 0.00 2.52
73 74 6.490721 CCTACGACCCTAATAGTGAAGATTCT 59.509 42.308 0.00 0.00 0.00 2.40
74 75 7.664731 CCTACGACCCTAATAGTGAAGATTCTA 59.335 40.741 0.00 0.00 0.00 2.10
75 76 9.233649 CTACGACCCTAATAGTGAAGATTCTAT 57.766 37.037 0.00 0.00 0.00 1.98
76 77 7.887381 ACGACCCTAATAGTGAAGATTCTATG 58.113 38.462 0.00 0.00 0.00 2.23
77 78 7.724506 ACGACCCTAATAGTGAAGATTCTATGA 59.275 37.037 0.00 0.00 0.00 2.15
78 79 8.744652 CGACCCTAATAGTGAAGATTCTATGAT 58.255 37.037 0.00 0.00 0.00 2.45
84 85 8.893219 AATAGTGAAGATTCTATGATTTGCGA 57.107 30.769 0.00 0.00 0.00 5.10
85 86 9.499479 AATAGTGAAGATTCTATGATTTGCGAT 57.501 29.630 0.00 0.00 0.00 4.58
86 87 7.418840 AGTGAAGATTCTATGATTTGCGATC 57.581 36.000 0.00 0.00 0.00 3.69
87 88 6.426328 AGTGAAGATTCTATGATTTGCGATCC 59.574 38.462 0.00 0.00 0.00 3.36
88 89 6.426328 GTGAAGATTCTATGATTTGCGATCCT 59.574 38.462 0.00 0.00 0.00 3.24
89 90 7.600375 GTGAAGATTCTATGATTTGCGATCCTA 59.400 37.037 0.00 0.00 0.00 2.94
90 91 7.600375 TGAAGATTCTATGATTTGCGATCCTAC 59.400 37.037 0.00 0.00 0.00 3.18
91 92 6.402222 AGATTCTATGATTTGCGATCCTACC 58.598 40.000 0.00 0.00 0.00 3.18
92 93 4.174411 TCTATGATTTGCGATCCTACCG 57.826 45.455 0.00 0.00 0.00 4.02
93 94 2.910688 ATGATTTGCGATCCTACCGT 57.089 45.000 0.00 0.00 0.00 4.83
94 95 2.218953 TGATTTGCGATCCTACCGTC 57.781 50.000 0.00 0.00 0.00 4.79
95 96 1.129326 GATTTGCGATCCTACCGTCG 58.871 55.000 0.00 0.00 40.62 5.12
96 97 0.249322 ATTTGCGATCCTACCGTCGG 60.249 55.000 10.48 10.48 38.24 4.79
97 98 1.314534 TTTGCGATCCTACCGTCGGA 61.315 55.000 20.51 0.31 38.24 4.55
98 99 1.721664 TTGCGATCCTACCGTCGGAG 61.722 60.000 20.51 10.82 39.29 4.63
99 100 2.638154 CGATCCTACCGTCGGAGC 59.362 66.667 20.51 0.00 33.29 4.70
100 101 1.892862 CGATCCTACCGTCGGAGCT 60.893 63.158 20.51 0.00 34.87 4.09
101 102 1.843734 CGATCCTACCGTCGGAGCTC 61.844 65.000 20.51 4.71 34.87 4.09
102 103 1.517210 GATCCTACCGTCGGAGCTCC 61.517 65.000 23.79 23.79 34.23 4.70
112 113 4.976996 GGAGCTCCGATCCGATTC 57.023 61.111 19.06 0.00 0.00 2.52
113 114 2.041976 GGAGCTCCGATCCGATTCA 58.958 57.895 19.06 0.00 0.00 2.57
114 115 0.389391 GGAGCTCCGATCCGATTCAA 59.611 55.000 19.06 0.00 0.00 2.69
115 116 1.202533 GGAGCTCCGATCCGATTCAAA 60.203 52.381 19.06 0.00 0.00 2.69
116 117 2.550978 GAGCTCCGATCCGATTCAAAA 58.449 47.619 0.87 0.00 0.00 2.44
117 118 3.134458 GAGCTCCGATCCGATTCAAAAT 58.866 45.455 0.87 0.00 0.00 1.82
118 119 3.134458 AGCTCCGATCCGATTCAAAATC 58.866 45.455 0.00 0.00 0.00 2.17
119 120 2.872245 GCTCCGATCCGATTCAAAATCA 59.128 45.455 1.07 0.00 0.00 2.57
120 121 3.303395 GCTCCGATCCGATTCAAAATCAC 60.303 47.826 1.07 0.00 0.00 3.06
121 122 2.863740 TCCGATCCGATTCAAAATCACG 59.136 45.455 1.07 0.00 0.00 4.35
122 123 2.863740 CCGATCCGATTCAAAATCACGA 59.136 45.455 0.00 0.00 0.00 4.35
123 124 3.494626 CCGATCCGATTCAAAATCACGAT 59.505 43.478 0.00 1.08 0.00 3.73
124 125 4.024893 CCGATCCGATTCAAAATCACGATT 60.025 41.667 0.00 0.00 0.00 3.34
125 126 5.133264 CGATCCGATTCAAAATCACGATTC 58.867 41.667 0.00 0.00 0.00 2.52
126 127 5.050769 CGATCCGATTCAAAATCACGATTCT 60.051 40.000 0.00 0.00 0.00 2.40
127 128 5.469373 TCCGATTCAAAATCACGATTCTG 57.531 39.130 0.00 0.00 0.00 3.02
128 129 5.175127 TCCGATTCAAAATCACGATTCTGA 58.825 37.500 0.00 0.00 0.00 3.27
129 130 5.063438 TCCGATTCAAAATCACGATTCTGAC 59.937 40.000 0.00 0.00 28.41 3.51
130 131 5.163864 CCGATTCAAAATCACGATTCTGACA 60.164 40.000 0.00 0.00 28.41 3.58
131 132 6.306397 CGATTCAAAATCACGATTCTGACAA 58.694 36.000 0.00 0.00 28.41 3.18
132 133 6.247165 CGATTCAAAATCACGATTCTGACAAC 59.753 38.462 0.00 0.00 28.41 3.32
133 134 5.356882 TCAAAATCACGATTCTGACAACC 57.643 39.130 0.00 0.00 0.00 3.77
134 135 5.063204 TCAAAATCACGATTCTGACAACCT 58.937 37.500 0.00 0.00 0.00 3.50
135 136 5.530915 TCAAAATCACGATTCTGACAACCTT 59.469 36.000 0.00 0.00 0.00 3.50
136 137 5.362556 AAATCACGATTCTGACAACCTTG 57.637 39.130 0.00 0.00 0.00 3.61
140 141 1.523758 GATTCTGACAACCTTGCCGT 58.476 50.000 0.00 0.00 0.00 5.68
144 145 1.899814 TCTGACAACCTTGCCGTAGAT 59.100 47.619 0.00 0.00 0.00 1.98
164 165 2.270205 CAGTGCCGCCTCCTCATT 59.730 61.111 0.00 0.00 0.00 2.57
168 169 4.802051 GCCGCCTCCTCATTGCCA 62.802 66.667 0.00 0.00 0.00 4.92
171 172 1.377725 CGCCTCCTCATTGCCAAGT 60.378 57.895 0.00 0.00 0.00 3.16
190 191 2.786495 CGGACGAGCTAGCCATGGT 61.786 63.158 14.67 0.49 0.00 3.55
218 219 2.735772 CCAGCGCTACCCACAGGAT 61.736 63.158 10.99 0.00 36.73 3.24
327 329 3.378552 GCAGTGCGATCTCGTGTC 58.621 61.111 0.00 0.00 42.22 3.67
334 336 3.515286 GATCTCGTGTCCGCGGGA 61.515 66.667 27.83 14.11 45.99 5.14
346 348 3.692406 GCGGGACAGGGTCGTTCT 61.692 66.667 0.00 0.00 32.65 3.01
347 349 3.057337 CGGGACAGGGTCGTTCTT 58.943 61.111 0.00 0.00 32.65 2.52
348 350 1.370064 CGGGACAGGGTCGTTCTTT 59.630 57.895 0.00 0.00 32.65 2.52
349 351 0.949105 CGGGACAGGGTCGTTCTTTG 60.949 60.000 0.00 0.00 32.65 2.77
350 352 0.395312 GGGACAGGGTCGTTCTTTGA 59.605 55.000 0.00 0.00 32.65 2.69
351 353 1.509703 GGACAGGGTCGTTCTTTGAC 58.490 55.000 0.00 0.00 32.65 3.18
352 354 1.137513 GACAGGGTCGTTCTTTGACG 58.862 55.000 0.00 0.00 44.06 4.35
362 364 2.260481 GTTCTTTGACGAGGACGATCC 58.740 52.381 0.00 0.00 42.66 3.36
375 377 3.347411 CGATCCTCGTTGGGAAGAC 57.653 57.895 0.00 0.00 39.02 3.01
376 378 0.525668 CGATCCTCGTTGGGAAGACG 60.526 60.000 0.00 0.00 39.02 4.18
377 379 0.806492 GATCCTCGTTGGGAAGACGC 60.806 60.000 0.00 0.00 40.16 5.19
378 380 2.558554 ATCCTCGTTGGGAAGACGCG 62.559 60.000 3.53 3.53 40.16 6.01
379 381 2.049433 CTCGTTGGGAAGACGCGT 60.049 61.111 13.85 13.85 40.16 6.01
380 382 2.355363 TCGTTGGGAAGACGCGTG 60.355 61.111 20.70 0.00 40.16 5.34
381 383 3.411351 CGTTGGGAAGACGCGTGG 61.411 66.667 20.70 0.00 33.42 4.94
382 384 3.723348 GTTGGGAAGACGCGTGGC 61.723 66.667 20.70 2.09 0.00 5.01
383 385 3.936203 TTGGGAAGACGCGTGGCT 61.936 61.111 20.70 5.27 0.00 4.75
384 386 3.876589 TTGGGAAGACGCGTGGCTC 62.877 63.158 20.70 10.08 0.00 4.70
386 388 4.415332 GGAAGACGCGTGGCTCGA 62.415 66.667 20.70 0.00 42.86 4.04
387 389 2.202623 GAAGACGCGTGGCTCGAT 60.203 61.111 20.70 0.00 42.86 3.59
388 390 1.063649 GAAGACGCGTGGCTCGATA 59.936 57.895 20.70 0.00 42.86 2.92
389 391 1.201098 GAAGACGCGTGGCTCGATAC 61.201 60.000 20.70 0.00 42.86 2.24
390 392 2.609183 AAGACGCGTGGCTCGATACC 62.609 60.000 20.70 0.00 42.86 2.73
391 393 3.122250 GACGCGTGGCTCGATACCT 62.122 63.158 20.70 0.00 42.86 3.08
392 394 2.353607 CGCGTGGCTCGATACCTC 60.354 66.667 13.77 2.10 42.86 3.85
393 395 2.353607 GCGTGGCTCGATACCTCG 60.354 66.667 19.16 19.16 46.41 4.63
404 406 2.190325 GATACCTCGAACGACACCAG 57.810 55.000 0.00 0.00 0.00 4.00
405 407 1.471684 GATACCTCGAACGACACCAGT 59.528 52.381 0.00 0.00 0.00 4.00
406 408 0.594602 TACCTCGAACGACACCAGTG 59.405 55.000 0.00 0.00 0.00 3.66
407 409 1.105167 ACCTCGAACGACACCAGTGA 61.105 55.000 4.48 0.00 0.00 3.41
408 410 0.387367 CCTCGAACGACACCAGTGAG 60.387 60.000 4.48 0.90 0.00 3.51
409 411 0.591659 CTCGAACGACACCAGTGAGA 59.408 55.000 4.48 0.00 0.00 3.27
410 412 1.001706 CTCGAACGACACCAGTGAGAA 60.002 52.381 4.48 0.00 0.00 2.87
411 413 1.611977 TCGAACGACACCAGTGAGAAT 59.388 47.619 4.48 0.00 0.00 2.40
412 414 1.721389 CGAACGACACCAGTGAGAATG 59.279 52.381 4.48 0.00 0.00 2.67
413 415 2.607038 CGAACGACACCAGTGAGAATGA 60.607 50.000 4.48 0.00 0.00 2.57
414 416 3.589988 GAACGACACCAGTGAGAATGAT 58.410 45.455 4.48 0.00 0.00 2.45
415 417 2.964740 ACGACACCAGTGAGAATGATG 58.035 47.619 4.48 0.00 0.00 3.07
416 418 2.562738 ACGACACCAGTGAGAATGATGA 59.437 45.455 4.48 0.00 0.00 2.92
417 419 3.185330 CGACACCAGTGAGAATGATGAG 58.815 50.000 4.48 0.00 0.00 2.90
418 420 3.529533 GACACCAGTGAGAATGATGAGG 58.470 50.000 4.48 0.00 0.00 3.86
419 421 3.176411 ACACCAGTGAGAATGATGAGGA 58.824 45.455 4.48 0.00 0.00 3.71
420 422 3.055530 ACACCAGTGAGAATGATGAGGAC 60.056 47.826 4.48 0.00 0.00 3.85
421 423 2.167281 ACCAGTGAGAATGATGAGGACG 59.833 50.000 0.00 0.00 0.00 4.79
422 424 2.428530 CCAGTGAGAATGATGAGGACGA 59.571 50.000 0.00 0.00 0.00 4.20
423 425 3.443037 CAGTGAGAATGATGAGGACGAC 58.557 50.000 0.00 0.00 0.00 4.34
424 426 3.130164 CAGTGAGAATGATGAGGACGACT 59.870 47.826 0.00 0.00 0.00 4.18
425 427 3.380004 AGTGAGAATGATGAGGACGACTC 59.620 47.826 0.00 0.00 46.78 3.36
434 436 1.736612 GAGGACGACTCGAAGTAGGT 58.263 55.000 5.20 0.00 36.29 3.08
435 437 2.083002 GAGGACGACTCGAAGTAGGTT 58.917 52.381 5.20 0.00 36.29 3.50
436 438 2.083002 AGGACGACTCGAAGTAGGTTC 58.917 52.381 5.20 0.00 0.00 3.62
437 439 2.083002 GGACGACTCGAAGTAGGTTCT 58.917 52.381 5.20 0.00 32.33 3.01
438 440 3.055530 AGGACGACTCGAAGTAGGTTCTA 60.056 47.826 5.20 0.00 32.33 2.10
439 441 3.309410 GGACGACTCGAAGTAGGTTCTAG 59.691 52.174 5.20 0.00 34.73 2.43
440 442 3.932089 GACGACTCGAAGTAGGTTCTAGT 59.068 47.826 5.20 0.00 42.43 2.57
441 443 4.322567 ACGACTCGAAGTAGGTTCTAGTT 58.677 43.478 5.20 0.00 40.41 2.24
442 444 4.153835 ACGACTCGAAGTAGGTTCTAGTTG 59.846 45.833 5.20 5.53 43.52 3.16
443 445 4.413969 GACTCGAAGTAGGTTCTAGTTGC 58.586 47.826 0.32 0.00 40.41 4.17
444 446 4.080687 ACTCGAAGTAGGTTCTAGTTGCT 58.919 43.478 0.32 0.00 37.83 3.91
445 447 4.156373 ACTCGAAGTAGGTTCTAGTTGCTC 59.844 45.833 0.32 0.00 37.83 4.26
446 448 3.126514 TCGAAGTAGGTTCTAGTTGCTCG 59.873 47.826 0.32 0.00 32.33 5.03
447 449 3.119919 CGAAGTAGGTTCTAGTTGCTCGT 60.120 47.826 0.32 0.00 32.33 4.18
448 450 4.093998 CGAAGTAGGTTCTAGTTGCTCGTA 59.906 45.833 0.32 0.00 32.33 3.43
449 451 5.220815 CGAAGTAGGTTCTAGTTGCTCGTAT 60.221 44.000 0.32 0.00 32.33 3.06
450 452 6.527057 AAGTAGGTTCTAGTTGCTCGTATT 57.473 37.500 0.00 0.00 0.00 1.89
451 453 5.892568 AGTAGGTTCTAGTTGCTCGTATTG 58.107 41.667 0.00 0.00 0.00 1.90
452 454 4.124851 AGGTTCTAGTTGCTCGTATTGG 57.875 45.455 0.00 0.00 0.00 3.16
453 455 3.767673 AGGTTCTAGTTGCTCGTATTGGA 59.232 43.478 0.00 0.00 0.00 3.53
454 456 3.864003 GGTTCTAGTTGCTCGTATTGGAC 59.136 47.826 0.00 0.00 0.00 4.02
455 457 4.381718 GGTTCTAGTTGCTCGTATTGGACT 60.382 45.833 0.00 0.00 0.00 3.85
456 458 5.163581 GGTTCTAGTTGCTCGTATTGGACTA 60.164 44.000 0.00 0.00 0.00 2.59
457 459 5.752892 TCTAGTTGCTCGTATTGGACTAG 57.247 43.478 0.00 0.00 38.45 2.57
458 460 3.166489 AGTTGCTCGTATTGGACTAGC 57.834 47.619 0.00 0.00 45.05 3.42
459 461 2.761208 AGTTGCTCGTATTGGACTAGCT 59.239 45.455 0.00 0.00 45.07 3.32
460 462 3.195825 AGTTGCTCGTATTGGACTAGCTT 59.804 43.478 0.00 0.00 45.07 3.74
461 463 3.887621 TGCTCGTATTGGACTAGCTTT 57.112 42.857 0.00 0.00 45.07 3.51
462 464 4.202245 TGCTCGTATTGGACTAGCTTTT 57.798 40.909 0.00 0.00 45.07 2.27
463 465 4.575885 TGCTCGTATTGGACTAGCTTTTT 58.424 39.130 0.00 0.00 45.07 1.94
495 497 7.251281 TCTATGCTATGATGAAGTATGTACGC 58.749 38.462 0.00 0.00 0.00 4.42
496 498 5.453567 TGCTATGATGAAGTATGTACGCT 57.546 39.130 0.00 0.00 0.00 5.07
497 499 6.569179 TGCTATGATGAAGTATGTACGCTA 57.431 37.500 0.00 0.00 0.00 4.26
498 500 7.158099 TGCTATGATGAAGTATGTACGCTAT 57.842 36.000 0.00 0.00 0.00 2.97
499 501 7.029563 TGCTATGATGAAGTATGTACGCTATG 58.970 38.462 0.00 0.00 0.00 2.23
500 502 7.030165 GCTATGATGAAGTATGTACGCTATGT 58.970 38.462 0.00 0.00 0.00 2.29
501 503 7.008719 GCTATGATGAAGTATGTACGCTATGTG 59.991 40.741 0.00 0.00 0.00 3.21
502 504 6.385649 TGATGAAGTATGTACGCTATGTGA 57.614 37.500 0.00 0.00 0.00 3.58
503 505 6.801575 TGATGAAGTATGTACGCTATGTGAA 58.198 36.000 0.00 0.00 0.00 3.18
504 506 6.695713 TGATGAAGTATGTACGCTATGTGAAC 59.304 38.462 0.00 0.00 0.00 3.18
505 507 6.203808 TGAAGTATGTACGCTATGTGAACT 57.796 37.500 0.00 0.00 0.00 3.01
506 508 7.324354 TGAAGTATGTACGCTATGTGAACTA 57.676 36.000 0.00 0.00 0.00 2.24
507 509 7.937649 TGAAGTATGTACGCTATGTGAACTAT 58.062 34.615 0.00 0.00 0.00 2.12
508 510 8.074370 TGAAGTATGTACGCTATGTGAACTATC 58.926 37.037 0.00 0.00 0.00 2.08
509 511 7.747155 AGTATGTACGCTATGTGAACTATCT 57.253 36.000 0.00 0.00 0.00 1.98
510 512 8.843885 AGTATGTACGCTATGTGAACTATCTA 57.156 34.615 0.00 0.00 0.00 1.98
511 513 9.451002 AGTATGTACGCTATGTGAACTATCTAT 57.549 33.333 0.00 0.00 0.00 1.98
512 514 9.491934 GTATGTACGCTATGTGAACTATCTATG 57.508 37.037 0.00 0.00 0.00 2.23
513 515 7.506328 TGTACGCTATGTGAACTATCTATGT 57.494 36.000 0.00 0.00 0.00 2.29
514 516 8.611654 TGTACGCTATGTGAACTATCTATGTA 57.388 34.615 0.00 0.00 0.00 2.29
515 517 9.227777 TGTACGCTATGTGAACTATCTATGTAT 57.772 33.333 0.00 0.00 0.00 2.29
516 518 9.705471 GTACGCTATGTGAACTATCTATGTATC 57.295 37.037 0.00 0.00 0.00 2.24
517 519 8.336801 ACGCTATGTGAACTATCTATGTATCA 57.663 34.615 0.00 0.00 0.00 2.15
518 520 8.961634 ACGCTATGTGAACTATCTATGTATCAT 58.038 33.333 0.00 0.00 0.00 2.45
519 521 9.794685 CGCTATGTGAACTATCTATGTATCATT 57.205 33.333 0.00 0.00 0.00 2.57
577 579 7.982761 ATTTGTTTGGAATGCATATGTTGTT 57.017 28.000 0.00 0.00 0.00 2.83
578 580 7.418840 TTTGTTTGGAATGCATATGTTGTTC 57.581 32.000 0.00 6.47 0.00 3.18
579 581 5.159925 TGTTTGGAATGCATATGTTGTTCG 58.840 37.500 0.00 0.00 0.00 3.95
580 582 5.160641 GTTTGGAATGCATATGTTGTTCGT 58.839 37.500 0.00 0.00 0.00 3.85
581 583 4.354071 TGGAATGCATATGTTGTTCGTG 57.646 40.909 0.00 0.00 0.00 4.35
582 584 3.108144 GGAATGCATATGTTGTTCGTGC 58.892 45.455 0.00 0.00 36.39 5.34
583 585 2.456942 ATGCATATGTTGTTCGTGCG 57.543 45.000 0.00 0.00 38.58 5.34
584 586 1.433534 TGCATATGTTGTTCGTGCGA 58.566 45.000 4.29 0.00 38.58 5.10
585 587 1.393196 TGCATATGTTGTTCGTGCGAG 59.607 47.619 4.29 0.00 38.58 5.03
586 588 1.658596 GCATATGTTGTTCGTGCGAGA 59.341 47.619 4.29 0.00 0.00 4.04
587 589 2.285256 GCATATGTTGTTCGTGCGAGAG 60.285 50.000 4.29 0.00 0.00 3.20
606 608 4.842091 GCGCGCTGCCCAGATTTG 62.842 66.667 26.67 0.00 37.76 2.32
607 609 4.842091 CGCGCTGCCCAGATTTGC 62.842 66.667 5.56 0.00 0.00 3.68
608 610 3.751246 GCGCTGCCCAGATTTGCA 61.751 61.111 0.00 0.00 35.86 4.08
612 614 3.751246 TGCCCAGATTTGCAGCGC 61.751 61.111 0.00 0.00 32.77 5.92
613 615 4.503314 GCCCAGATTTGCAGCGCC 62.503 66.667 2.29 0.00 0.00 6.53
614 616 2.753043 CCCAGATTTGCAGCGCCT 60.753 61.111 2.29 0.00 0.00 5.52
615 617 2.488355 CCAGATTTGCAGCGCCTG 59.512 61.111 2.29 1.58 34.12 4.85
628 630 4.074526 GCCTGCTGGAGCGACTCA 62.075 66.667 14.77 0.00 45.83 3.41
629 631 2.125753 CCTGCTGGAGCGACTCAC 60.126 66.667 2.92 0.64 45.83 3.51
630 632 2.505777 CTGCTGGAGCGACTCACG 60.506 66.667 8.71 0.00 45.83 4.35
639 641 4.148230 CGACTCACGCGCTAAACT 57.852 55.556 5.73 0.00 34.51 2.66
640 642 2.431539 CGACTCACGCGCTAAACTT 58.568 52.632 5.73 0.00 34.51 2.66
641 643 0.782384 CGACTCACGCGCTAAACTTT 59.218 50.000 5.73 0.00 34.51 2.66
642 644 1.201672 CGACTCACGCGCTAAACTTTC 60.202 52.381 5.73 0.00 34.51 2.62
643 645 1.790623 GACTCACGCGCTAAACTTTCA 59.209 47.619 5.73 0.00 0.00 2.69
644 646 2.206750 ACTCACGCGCTAAACTTTCAA 58.793 42.857 5.73 0.00 0.00 2.69
645 647 2.033151 ACTCACGCGCTAAACTTTCAAC 60.033 45.455 5.73 0.00 0.00 3.18
646 648 1.934525 TCACGCGCTAAACTTTCAACA 59.065 42.857 5.73 0.00 0.00 3.33
647 649 2.033236 TCACGCGCTAAACTTTCAACAG 60.033 45.455 5.73 0.00 0.00 3.16
648 650 1.937899 ACGCGCTAAACTTTCAACAGT 59.062 42.857 5.73 0.00 0.00 3.55
649 651 2.033151 ACGCGCTAAACTTTCAACAGTC 60.033 45.455 5.73 0.00 0.00 3.51
650 652 2.560896 GCGCTAAACTTTCAACAGTCG 58.439 47.619 0.00 0.00 0.00 4.18
651 653 2.560896 CGCTAAACTTTCAACAGTCGC 58.439 47.619 0.00 0.00 0.00 5.19
652 654 2.221055 CGCTAAACTTTCAACAGTCGCT 59.779 45.455 0.00 0.00 0.00 4.93
653 655 3.545633 GCTAAACTTTCAACAGTCGCTG 58.454 45.455 5.47 5.47 37.52 5.18
654 656 3.607078 GCTAAACTTTCAACAGTCGCTGG 60.607 47.826 10.80 0.00 35.51 4.85
655 657 2.325583 AACTTTCAACAGTCGCTGGA 57.674 45.000 10.80 0.00 35.51 3.86
656 658 1.871080 ACTTTCAACAGTCGCTGGAG 58.129 50.000 10.80 3.96 35.51 3.86
657 659 0.514691 CTTTCAACAGTCGCTGGAGC 59.485 55.000 10.80 0.00 35.51 4.70
658 660 0.179059 TTTCAACAGTCGCTGGAGCA 60.179 50.000 10.80 0.00 42.21 4.26
659 661 0.179059 TTCAACAGTCGCTGGAGCAA 60.179 50.000 10.80 0.00 42.21 3.91
660 662 0.601046 TCAACAGTCGCTGGAGCAAG 60.601 55.000 10.80 0.00 42.21 4.01
661 663 1.963338 AACAGTCGCTGGAGCAAGC 60.963 57.895 10.80 0.00 42.21 4.01
667 669 4.233635 GCTGGAGCAAGCGCATCG 62.234 66.667 11.47 0.00 42.27 3.84
685 687 3.091022 CGCCGCGCAAAAACTGAC 61.091 61.111 8.75 0.00 0.00 3.51
686 688 3.091022 GCCGCGCAAAAACTGACG 61.091 61.111 8.75 0.00 0.00 4.35
687 689 2.629210 CCGCGCAAAAACTGACGA 59.371 55.556 8.75 0.00 0.00 4.20
688 690 1.721133 CCGCGCAAAAACTGACGAC 60.721 57.895 8.75 0.00 0.00 4.34
689 691 1.721133 CGCGCAAAAACTGACGACC 60.721 57.895 8.75 0.00 0.00 4.79
690 692 1.370051 GCGCAAAAACTGACGACCC 60.370 57.895 0.30 0.00 0.00 4.46
691 693 1.083015 CGCAAAAACTGACGACCCG 60.083 57.895 0.00 0.00 0.00 5.28
692 694 1.370051 GCAAAAACTGACGACCCGC 60.370 57.895 0.00 0.00 0.00 6.13
702 704 3.342627 CGACCCGCGTGCTTCAAA 61.343 61.111 4.92 0.00 34.64 2.69
703 705 2.887889 CGACCCGCGTGCTTCAAAA 61.888 57.895 4.92 0.00 34.64 2.44
704 706 1.082104 GACCCGCGTGCTTCAAAAG 60.082 57.895 4.92 0.00 0.00 2.27
705 707 2.255252 CCCGCGTGCTTCAAAAGG 59.745 61.111 4.92 0.00 0.00 3.11
706 708 2.255252 CCGCGTGCTTCAAAAGGG 59.745 61.111 4.92 0.00 0.00 3.95
707 709 2.551912 CCGCGTGCTTCAAAAGGGT 61.552 57.895 4.92 0.00 0.00 4.34
708 710 1.358759 CGCGTGCTTCAAAAGGGTT 59.641 52.632 0.00 0.00 0.00 4.11
709 711 0.248866 CGCGTGCTTCAAAAGGGTTT 60.249 50.000 0.00 0.00 0.00 3.27
710 712 1.801025 CGCGTGCTTCAAAAGGGTTTT 60.801 47.619 0.00 0.00 0.00 2.43
711 713 2.276201 GCGTGCTTCAAAAGGGTTTTT 58.724 42.857 0.00 0.00 36.97 1.94
712 714 3.449632 GCGTGCTTCAAAAGGGTTTTTA 58.550 40.909 0.00 0.00 34.81 1.52
713 715 3.489416 GCGTGCTTCAAAAGGGTTTTTAG 59.511 43.478 0.00 0.00 34.81 1.85
714 716 3.489416 CGTGCTTCAAAAGGGTTTTTAGC 59.511 43.478 8.20 8.20 37.83 3.09
715 717 3.489416 GTGCTTCAAAAGGGTTTTTAGCG 59.511 43.478 9.63 0.00 39.08 4.26
716 718 2.475111 GCTTCAAAAGGGTTTTTAGCGC 59.525 45.455 0.00 0.00 34.81 5.92
717 719 2.409152 TCAAAAGGGTTTTTAGCGCG 57.591 45.000 0.00 0.00 34.81 6.86
718 720 0.781787 CAAAAGGGTTTTTAGCGCGC 59.218 50.000 26.66 26.66 34.81 6.86
719 721 0.319211 AAAAGGGTTTTTAGCGCGCC 60.319 50.000 30.33 11.31 34.81 6.53
720 722 2.466520 AAAGGGTTTTTAGCGCGCCG 62.467 55.000 30.33 0.00 0.00 6.46
735 737 4.147322 CCGCGCGTAACTTGGCTG 62.147 66.667 29.95 4.86 0.00 4.85
736 738 3.411351 CGCGCGTAACTTGGCTGT 61.411 61.111 24.19 0.00 0.00 4.40
737 739 2.943653 GCGCGTAACTTGGCTGTT 59.056 55.556 8.43 2.52 0.00 3.16
738 740 1.440353 GCGCGTAACTTGGCTGTTG 60.440 57.895 8.43 0.00 0.00 3.33
739 741 1.206578 CGCGTAACTTGGCTGTTGG 59.793 57.895 0.00 1.44 0.00 3.77
740 742 1.225376 CGCGTAACTTGGCTGTTGGA 61.225 55.000 0.00 0.00 0.00 3.53
741 743 1.165270 GCGTAACTTGGCTGTTGGAT 58.835 50.000 6.69 0.00 0.00 3.41
742 744 1.135689 GCGTAACTTGGCTGTTGGATG 60.136 52.381 6.69 0.00 0.00 3.51
743 745 1.135689 CGTAACTTGGCTGTTGGATGC 60.136 52.381 6.69 0.00 0.00 3.91
744 746 2.162681 GTAACTTGGCTGTTGGATGCT 58.837 47.619 6.69 0.00 0.00 3.79
745 747 1.251251 AACTTGGCTGTTGGATGCTC 58.749 50.000 0.00 0.00 0.00 4.26
746 748 0.403271 ACTTGGCTGTTGGATGCTCT 59.597 50.000 0.00 0.00 0.00 4.09
747 749 1.202976 ACTTGGCTGTTGGATGCTCTT 60.203 47.619 0.00 0.00 0.00 2.85
748 750 2.040278 ACTTGGCTGTTGGATGCTCTTA 59.960 45.455 0.00 0.00 0.00 2.10
749 751 3.285484 CTTGGCTGTTGGATGCTCTTAT 58.715 45.455 0.00 0.00 0.00 1.73
750 752 4.080356 ACTTGGCTGTTGGATGCTCTTATA 60.080 41.667 0.00 0.00 0.00 0.98
751 753 3.808728 TGGCTGTTGGATGCTCTTATAC 58.191 45.455 0.00 0.00 0.00 1.47
859 868 9.574516 AGAATGAATTAACTACACAAAGTTCCT 57.425 29.630 0.00 0.00 40.20 3.36
862 871 8.161699 TGAATTAACTACACAAAGTTCCTTCC 57.838 34.615 0.00 0.00 40.20 3.46
863 872 7.996644 TGAATTAACTACACAAAGTTCCTTCCT 59.003 33.333 0.00 0.00 40.20 3.36
888 924 3.651803 ATATGCGAGTGAGTTCCTAGC 57.348 47.619 0.00 0.00 0.00 3.42
894 930 0.971447 AGTGAGTTCCTAGCGGGGTC 60.971 60.000 0.00 0.00 35.33 4.46
895 931 2.050350 TGAGTTCCTAGCGGGGTCG 61.050 63.158 0.00 0.00 39.81 4.79
954 1093 3.062466 GCGGGAAAACCAGAGGGC 61.062 66.667 0.00 0.00 40.22 5.19
983 1122 1.630369 AGCCCACTAGTGCAATTCTCA 59.370 47.619 17.86 0.00 0.00 3.27
1079 1227 1.599606 CGGCGAGCTGGCTCCTATAT 61.600 60.000 20.62 0.00 42.02 0.86
1125 1273 3.289834 CACAGGCAGCACACACCC 61.290 66.667 0.00 0.00 0.00 4.61
1128 1276 4.586235 AGGCAGCACACACCCCAC 62.586 66.667 0.00 0.00 0.00 4.61
1138 1286 2.282180 CACCCCACCAAAGTCCGG 60.282 66.667 0.00 0.00 0.00 5.14
2130 2278 3.000674 GTGACTTCGTCGACATATTGCTG 60.001 47.826 17.16 0.00 34.95 4.41
2234 2382 7.307694 TCATCATGAGCAACAAATACAACTTC 58.692 34.615 0.09 0.00 0.00 3.01
2251 2399 6.262601 ACAACTTCTTCACCAAATTAACACG 58.737 36.000 0.00 0.00 0.00 4.49
2366 2590 2.542907 AAAGCGGCCAGTGAACGTG 61.543 57.895 2.24 0.00 0.00 4.49
2367 2591 2.933878 AAAGCGGCCAGTGAACGTGA 62.934 55.000 2.24 0.00 0.00 4.35
2432 2660 8.094548 ACCAGCTTTTTCTTCTTTGTTTAGTTT 58.905 29.630 0.00 0.00 0.00 2.66
3341 3627 0.312102 TGTGAGCGTGAGAGTGACTG 59.688 55.000 0.00 0.00 0.00 3.51
3410 3696 0.593128 GATTTTGTGCGGAGTGTGCT 59.407 50.000 0.00 0.00 0.00 4.40
3473 3759 1.896660 GCTTTTGGGTCGCACTCCA 60.897 57.895 0.00 0.00 0.00 3.86
3485 3771 0.536006 GCACTCCAACCTCAGCAACT 60.536 55.000 0.00 0.00 0.00 3.16
3528 3816 4.199310 TCCTGAATCTTAAAGGAATGGCG 58.801 43.478 0.00 0.00 37.16 5.69
3535 3823 4.007659 TCTTAAAGGAATGGCGGAGTTTC 58.992 43.478 0.00 0.00 0.00 2.78
3570 3859 5.692115 TGCTGAACATTAGATACCTGGAA 57.308 39.130 0.00 0.00 0.00 3.53
3571 3860 5.674525 TGCTGAACATTAGATACCTGGAAG 58.325 41.667 0.00 0.00 0.00 3.46
3576 3865 9.401058 CTGAACATTAGATACCTGGAAGAAAAT 57.599 33.333 0.00 0.00 34.07 1.82
3689 3987 2.897972 GCGATAACCGGTGGGAGT 59.102 61.111 8.52 0.00 39.04 3.85
3755 4079 3.480133 CTTAGAGGGGTGGCCGGG 61.480 72.222 2.18 0.00 0.00 5.73
3846 4278 4.506255 CCATGGGGGACGAAGGCC 62.506 72.222 2.85 0.00 40.01 5.19
3868 4300 1.080093 GATTGGTCGCACGTGAGGA 60.080 57.895 22.23 12.88 0.00 3.71
3873 4307 1.006571 GTCGCACGTGAGGAGGAAA 60.007 57.895 22.23 0.00 0.00 3.13
3874 4308 1.009389 GTCGCACGTGAGGAGGAAAG 61.009 60.000 22.23 0.00 0.00 2.62
3879 4313 0.114560 ACGTGAGGAGGAAAGGGAGA 59.885 55.000 0.00 0.00 0.00 3.71
3887 4321 2.372172 GGAGGAAAGGGAGAAACTGTCA 59.628 50.000 0.00 0.00 0.00 3.58
3941 4375 1.514678 AACAATGCACGCACGATGGT 61.515 50.000 0.00 0.00 0.00 3.55
4061 4495 3.595173 GTGCTCAAAAACAAGTTTGGGT 58.405 40.909 0.00 0.00 40.49 4.51
4090 4524 2.464157 GCTGAGCCAAACTCTGTAGT 57.536 50.000 0.00 0.00 46.41 2.73
4101 4535 3.577805 ACTCTGTAGTTTGCCCTTTGT 57.422 42.857 0.00 0.00 29.00 2.83
4104 4538 1.680735 CTGTAGTTTGCCCTTTGTGCA 59.319 47.619 0.00 0.00 36.84 4.57
4105 4539 2.100584 CTGTAGTTTGCCCTTTGTGCAA 59.899 45.455 0.00 0.00 46.30 4.08
4109 4543 1.754621 TTGCCCTTTGTGCAACCGA 60.755 52.632 0.00 0.00 43.36 4.69
4111 4545 1.299850 GCCCTTTGTGCAACCGAAC 60.300 57.895 0.00 0.00 34.36 3.95
4112 4546 1.734388 GCCCTTTGTGCAACCGAACT 61.734 55.000 0.00 0.00 34.36 3.01
4113 4547 0.310854 CCCTTTGTGCAACCGAACTC 59.689 55.000 0.00 0.00 34.36 3.01
4114 4548 0.310854 CCTTTGTGCAACCGAACTCC 59.689 55.000 0.00 0.00 34.36 3.85
4115 4549 1.021202 CTTTGTGCAACCGAACTCCA 58.979 50.000 0.00 0.00 34.36 3.86
4116 4550 1.002468 CTTTGTGCAACCGAACTCCAG 60.002 52.381 0.00 0.00 34.36 3.86
4117 4551 0.179234 TTGTGCAACCGAACTCCAGA 59.821 50.000 0.00 0.00 34.36 3.86
4118 4552 0.249868 TGTGCAACCGAACTCCAGAG 60.250 55.000 0.00 0.00 34.36 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.105473 TCGTAGAATCAGAGGGGTTAGTTTG 60.105 44.000 0.00 0.00 0.00 2.93
1 2 5.021458 TCGTAGAATCAGAGGGGTTAGTTT 58.979 41.667 0.00 0.00 0.00 2.66
2 3 4.607239 TCGTAGAATCAGAGGGGTTAGTT 58.393 43.478 0.00 0.00 0.00 2.24
3 4 4.246712 TCGTAGAATCAGAGGGGTTAGT 57.753 45.455 0.00 0.00 0.00 2.24
4 5 5.793030 AATCGTAGAATCAGAGGGGTTAG 57.207 43.478 0.00 0.00 43.58 2.34
5 6 6.555463 AAAATCGTAGAATCAGAGGGGTTA 57.445 37.500 0.00 0.00 43.58 2.85
6 7 5.437191 AAAATCGTAGAATCAGAGGGGTT 57.563 39.130 0.00 0.00 43.58 4.11
7 8 5.661759 AGTAAAATCGTAGAATCAGAGGGGT 59.338 40.000 0.00 0.00 43.58 4.95
8 9 6.163135 AGTAAAATCGTAGAATCAGAGGGG 57.837 41.667 0.00 0.00 43.58 4.79
9 10 7.265673 TGAAGTAAAATCGTAGAATCAGAGGG 58.734 38.462 0.00 0.00 43.58 4.30
10 11 8.879342 ATGAAGTAAAATCGTAGAATCAGAGG 57.121 34.615 0.00 0.00 43.58 3.69
21 22 9.798994 AACGTAGATTCTATGAAGTAAAATCGT 57.201 29.630 17.81 5.98 32.82 3.73
27 28 8.554528 CGTAGGAACGTAGATTCTATGAAGTAA 58.445 37.037 17.81 0.52 44.21 2.24
28 29 8.081208 CGTAGGAACGTAGATTCTATGAAGTA 57.919 38.462 17.81 3.48 44.21 2.24
29 30 6.957150 CGTAGGAACGTAGATTCTATGAAGT 58.043 40.000 17.81 4.58 44.21 3.01
45 46 5.591877 TCTTCACTATTAGGGTCGTAGGAAC 59.408 44.000 0.00 0.00 0.00 3.62
46 47 5.759059 TCTTCACTATTAGGGTCGTAGGAA 58.241 41.667 0.00 0.00 0.00 3.36
47 48 5.378230 TCTTCACTATTAGGGTCGTAGGA 57.622 43.478 0.00 0.00 0.00 2.94
48 49 6.490721 AGAATCTTCACTATTAGGGTCGTAGG 59.509 42.308 0.00 0.00 0.00 3.18
49 50 7.513371 AGAATCTTCACTATTAGGGTCGTAG 57.487 40.000 0.00 0.00 0.00 3.51
50 51 9.011095 CATAGAATCTTCACTATTAGGGTCGTA 57.989 37.037 0.00 0.00 0.00 3.43
51 52 7.724506 TCATAGAATCTTCACTATTAGGGTCGT 59.275 37.037 0.00 0.00 0.00 4.34
52 53 8.112016 TCATAGAATCTTCACTATTAGGGTCG 57.888 38.462 0.00 0.00 0.00 4.79
58 59 9.981114 TCGCAAATCATAGAATCTTCACTATTA 57.019 29.630 0.00 0.00 0.00 0.98
59 60 8.893219 TCGCAAATCATAGAATCTTCACTATT 57.107 30.769 0.00 0.00 0.00 1.73
60 61 9.149225 GATCGCAAATCATAGAATCTTCACTAT 57.851 33.333 0.00 0.00 0.00 2.12
61 62 7.600375 GGATCGCAAATCATAGAATCTTCACTA 59.400 37.037 0.00 0.00 0.00 2.74
62 63 6.426328 GGATCGCAAATCATAGAATCTTCACT 59.574 38.462 0.00 0.00 0.00 3.41
63 64 6.426328 AGGATCGCAAATCATAGAATCTTCAC 59.574 38.462 0.00 0.00 0.00 3.18
64 65 6.528321 AGGATCGCAAATCATAGAATCTTCA 58.472 36.000 0.00 0.00 0.00 3.02
65 66 7.064016 GGTAGGATCGCAAATCATAGAATCTTC 59.936 40.741 0.00 0.00 0.00 2.87
66 67 6.876257 GGTAGGATCGCAAATCATAGAATCTT 59.124 38.462 0.00 0.00 0.00 2.40
67 68 6.402222 GGTAGGATCGCAAATCATAGAATCT 58.598 40.000 0.00 0.00 0.00 2.40
68 69 5.289675 CGGTAGGATCGCAAATCATAGAATC 59.710 44.000 0.00 0.00 0.00 2.52
69 70 5.171476 CGGTAGGATCGCAAATCATAGAAT 58.829 41.667 0.00 0.00 0.00 2.40
70 71 4.038763 ACGGTAGGATCGCAAATCATAGAA 59.961 41.667 0.00 0.00 0.00 2.10
71 72 3.572682 ACGGTAGGATCGCAAATCATAGA 59.427 43.478 0.00 0.00 0.00 1.98
72 73 3.914312 ACGGTAGGATCGCAAATCATAG 58.086 45.455 0.00 0.00 0.00 2.23
73 74 3.610821 CGACGGTAGGATCGCAAATCATA 60.611 47.826 0.00 0.00 0.00 2.15
74 75 2.755650 GACGGTAGGATCGCAAATCAT 58.244 47.619 0.00 0.00 0.00 2.45
75 76 1.535226 CGACGGTAGGATCGCAAATCA 60.535 52.381 0.00 0.00 0.00 2.57
76 77 1.129326 CGACGGTAGGATCGCAAATC 58.871 55.000 0.00 0.00 0.00 2.17
77 78 0.249322 CCGACGGTAGGATCGCAAAT 60.249 55.000 5.48 0.00 37.01 2.32
78 79 1.140161 CCGACGGTAGGATCGCAAA 59.860 57.895 5.48 0.00 37.01 3.68
79 80 1.721664 CTCCGACGGTAGGATCGCAA 61.722 60.000 14.79 0.00 37.13 4.85
80 81 2.124612 TCCGACGGTAGGATCGCA 60.125 61.111 14.79 0.00 37.01 5.10
81 82 2.638154 CTCCGACGGTAGGATCGC 59.362 66.667 14.79 0.00 37.13 4.58
82 83 1.843734 GAGCTCCGACGGTAGGATCG 61.844 65.000 14.79 1.58 37.13 3.69
83 84 1.517210 GGAGCTCCGACGGTAGGATC 61.517 65.000 19.06 12.85 37.13 3.36
84 85 1.528776 GGAGCTCCGACGGTAGGAT 60.529 63.158 19.06 4.26 37.13 3.24
85 86 2.124403 GGAGCTCCGACGGTAGGA 60.124 66.667 19.06 9.70 36.20 2.94
95 96 0.389391 TTGAATCGGATCGGAGCTCC 59.611 55.000 23.79 23.79 0.00 4.70
96 97 2.225068 TTTGAATCGGATCGGAGCTC 57.775 50.000 4.71 4.71 0.00 4.09
97 98 2.691409 TTTTGAATCGGATCGGAGCT 57.309 45.000 9.03 0.00 0.00 4.09
98 99 2.872245 TGATTTTGAATCGGATCGGAGC 59.128 45.455 9.03 4.40 0.00 4.70
99 100 3.060272 CGTGATTTTGAATCGGATCGGAG 60.060 47.826 9.03 0.00 0.00 4.63
100 101 2.863740 CGTGATTTTGAATCGGATCGGA 59.136 45.455 5.34 5.34 0.00 4.55
101 102 2.863740 TCGTGATTTTGAATCGGATCGG 59.136 45.455 0.00 0.00 0.00 4.18
102 103 4.715520 ATCGTGATTTTGAATCGGATCG 57.284 40.909 0.00 0.00 0.00 3.69
103 104 6.018751 TCAGAATCGTGATTTTGAATCGGATC 60.019 38.462 11.97 0.00 38.47 3.36
104 105 5.817296 TCAGAATCGTGATTTTGAATCGGAT 59.183 36.000 11.97 0.00 38.47 4.18
105 106 5.063438 GTCAGAATCGTGATTTTGAATCGGA 59.937 40.000 15.00 0.00 41.57 4.55
106 107 5.163864 TGTCAGAATCGTGATTTTGAATCGG 60.164 40.000 15.00 0.00 41.57 4.18
107 108 5.857394 TGTCAGAATCGTGATTTTGAATCG 58.143 37.500 15.00 0.00 41.57 3.34
108 109 6.524586 GGTTGTCAGAATCGTGATTTTGAATC 59.475 38.462 15.00 6.96 41.57 2.52
109 110 6.207417 AGGTTGTCAGAATCGTGATTTTGAAT 59.793 34.615 15.00 0.99 41.57 2.57
110 111 5.530915 AGGTTGTCAGAATCGTGATTTTGAA 59.469 36.000 15.00 5.93 41.57 2.69
111 112 5.063204 AGGTTGTCAGAATCGTGATTTTGA 58.937 37.500 10.71 10.71 38.91 2.69
112 113 5.362556 AGGTTGTCAGAATCGTGATTTTG 57.637 39.130 6.75 6.75 35.10 2.44
113 114 5.762045 CAAGGTTGTCAGAATCGTGATTTT 58.238 37.500 0.00 0.00 0.00 1.82
114 115 4.320494 GCAAGGTTGTCAGAATCGTGATTT 60.320 41.667 0.00 0.00 0.00 2.17
115 116 3.189287 GCAAGGTTGTCAGAATCGTGATT 59.811 43.478 0.00 0.00 0.00 2.57
116 117 2.744202 GCAAGGTTGTCAGAATCGTGAT 59.256 45.455 0.00 0.00 0.00 3.06
117 118 2.143122 GCAAGGTTGTCAGAATCGTGA 58.857 47.619 0.00 0.00 0.00 4.35
118 119 1.197721 GGCAAGGTTGTCAGAATCGTG 59.802 52.381 0.00 0.00 31.86 4.35
119 120 1.523758 GGCAAGGTTGTCAGAATCGT 58.476 50.000 0.00 0.00 31.86 3.73
120 121 0.443869 CGGCAAGGTTGTCAGAATCG 59.556 55.000 0.00 0.00 31.86 3.34
121 122 1.523758 ACGGCAAGGTTGTCAGAATC 58.476 50.000 0.00 0.00 31.86 2.52
122 123 2.301870 TCTACGGCAAGGTTGTCAGAAT 59.698 45.455 0.00 0.00 31.86 2.40
123 124 1.689813 TCTACGGCAAGGTTGTCAGAA 59.310 47.619 0.00 0.00 31.86 3.02
124 125 1.334160 TCTACGGCAAGGTTGTCAGA 58.666 50.000 0.00 0.00 31.86 3.27
125 126 2.002586 CATCTACGGCAAGGTTGTCAG 58.997 52.381 0.00 0.00 31.86 3.51
126 127 1.943968 GCATCTACGGCAAGGTTGTCA 60.944 52.381 0.00 0.00 31.86 3.58
127 128 0.727398 GCATCTACGGCAAGGTTGTC 59.273 55.000 0.00 0.00 0.00 3.18
128 129 0.676782 GGCATCTACGGCAAGGTTGT 60.677 55.000 0.00 0.00 0.00 3.32
129 130 0.676466 TGGCATCTACGGCAAGGTTG 60.676 55.000 0.00 0.00 38.71 3.77
130 131 0.392998 CTGGCATCTACGGCAAGGTT 60.393 55.000 0.00 0.00 41.44 3.50
131 132 1.221840 CTGGCATCTACGGCAAGGT 59.778 57.895 0.00 0.00 41.44 3.50
132 133 1.091771 CACTGGCATCTACGGCAAGG 61.092 60.000 0.00 0.00 41.44 3.61
133 134 1.709147 GCACTGGCATCTACGGCAAG 61.709 60.000 0.00 0.00 41.44 4.01
134 135 1.745115 GCACTGGCATCTACGGCAA 60.745 57.895 0.00 0.00 41.44 4.52
135 136 2.125147 GCACTGGCATCTACGGCA 60.125 61.111 0.00 0.00 40.72 5.69
136 137 2.897350 GGCACTGGCATCTACGGC 60.897 66.667 0.00 0.00 43.71 5.68
140 141 3.083349 AGGCGGCACTGGCATCTA 61.083 61.111 13.08 0.00 43.71 1.98
164 165 1.934220 CTAGCTCGTCCGACTTGGCA 61.934 60.000 0.00 0.00 37.80 4.92
168 169 1.038130 ATGGCTAGCTCGTCCGACTT 61.038 55.000 15.72 0.00 0.00 3.01
171 172 2.490148 CCATGGCTAGCTCGTCCGA 61.490 63.158 15.72 0.00 0.00 4.55
212 213 3.052620 CTCGTCGGCGACATCCTGT 62.053 63.158 35.62 0.00 42.81 4.00
291 293 3.764466 CCTCCGCGAGTGCCTTCT 61.764 66.667 8.23 0.00 38.08 2.85
334 336 0.748450 TCGTCAAAGAACGACCCTGT 59.252 50.000 0.00 0.00 46.02 4.00
335 337 1.419374 CTCGTCAAAGAACGACCCTG 58.581 55.000 0.00 0.00 46.02 4.45
336 338 0.317479 CCTCGTCAAAGAACGACCCT 59.683 55.000 0.00 0.00 46.02 4.34
339 341 1.050767 CGTCCTCGTCAAAGAACGAC 58.949 55.000 0.00 0.00 46.02 4.34
341 343 1.912110 GATCGTCCTCGTCAAAGAACG 59.088 52.381 0.00 0.00 43.92 3.95
342 344 2.094649 AGGATCGTCCTCGTCAAAGAAC 60.095 50.000 1.23 0.00 45.66 3.01
343 345 2.168496 AGGATCGTCCTCGTCAAAGAA 58.832 47.619 1.23 0.00 45.66 2.52
344 346 1.835494 AGGATCGTCCTCGTCAAAGA 58.165 50.000 1.23 0.00 45.66 2.52
358 360 0.806492 GCGTCTTCCCAACGAGGATC 60.806 60.000 0.00 0.00 42.62 3.36
359 361 1.218316 GCGTCTTCCCAACGAGGAT 59.782 57.895 0.00 0.00 42.62 3.24
360 362 2.654877 GCGTCTTCCCAACGAGGA 59.345 61.111 0.00 0.00 42.62 3.71
361 363 2.809601 CGCGTCTTCCCAACGAGG 60.810 66.667 0.00 0.00 42.62 4.63
362 364 2.049433 ACGCGTCTTCCCAACGAG 60.049 61.111 5.58 0.00 42.62 4.18
363 365 2.355363 CACGCGTCTTCCCAACGA 60.355 61.111 9.86 0.00 42.62 3.85
364 366 3.411351 CCACGCGTCTTCCCAACG 61.411 66.667 9.86 0.00 42.87 4.10
365 367 3.723348 GCCACGCGTCTTCCCAAC 61.723 66.667 9.86 0.00 0.00 3.77
366 368 3.876589 GAGCCACGCGTCTTCCCAA 62.877 63.158 9.86 0.00 0.00 4.12
367 369 4.373116 GAGCCACGCGTCTTCCCA 62.373 66.667 9.86 0.00 0.00 4.37
369 371 2.332362 TATCGAGCCACGCGTCTTCC 62.332 60.000 9.86 0.00 42.26 3.46
370 372 1.063649 TATCGAGCCACGCGTCTTC 59.936 57.895 9.86 6.43 42.26 2.87
371 373 1.226603 GTATCGAGCCACGCGTCTT 60.227 57.895 9.86 0.00 42.26 3.01
372 374 2.408022 GTATCGAGCCACGCGTCT 59.592 61.111 9.86 3.85 42.26 4.18
373 375 2.654404 GGTATCGAGCCACGCGTC 60.654 66.667 9.86 0.00 42.26 5.19
374 376 3.122250 GAGGTATCGAGCCACGCGT 62.122 63.158 5.58 5.58 42.26 6.01
375 377 2.353607 GAGGTATCGAGCCACGCG 60.354 66.667 3.53 3.53 42.26 6.01
385 387 1.471684 ACTGGTGTCGTTCGAGGTATC 59.528 52.381 0.00 0.00 0.00 2.24
386 388 1.201647 CACTGGTGTCGTTCGAGGTAT 59.798 52.381 0.00 0.00 0.00 2.73
387 389 0.594602 CACTGGTGTCGTTCGAGGTA 59.405 55.000 0.00 0.00 0.00 3.08
388 390 1.105167 TCACTGGTGTCGTTCGAGGT 61.105 55.000 0.00 0.00 0.00 3.85
389 391 0.387367 CTCACTGGTGTCGTTCGAGG 60.387 60.000 0.00 0.00 0.00 4.63
390 392 0.591659 TCTCACTGGTGTCGTTCGAG 59.408 55.000 0.00 0.00 0.00 4.04
391 393 1.026584 TTCTCACTGGTGTCGTTCGA 58.973 50.000 0.53 0.00 0.00 3.71
392 394 1.721389 CATTCTCACTGGTGTCGTTCG 59.279 52.381 0.53 0.00 0.00 3.95
393 395 3.026630 TCATTCTCACTGGTGTCGTTC 57.973 47.619 0.53 0.00 0.00 3.95
394 396 3.006859 TCATCATTCTCACTGGTGTCGTT 59.993 43.478 0.53 0.00 0.00 3.85
395 397 2.562738 TCATCATTCTCACTGGTGTCGT 59.437 45.455 0.53 0.00 0.00 4.34
396 398 3.185330 CTCATCATTCTCACTGGTGTCG 58.815 50.000 0.53 0.00 0.00 4.35
397 399 3.196469 TCCTCATCATTCTCACTGGTGTC 59.804 47.826 0.53 0.00 0.00 3.67
398 400 3.055530 GTCCTCATCATTCTCACTGGTGT 60.056 47.826 0.53 0.00 0.00 4.16
399 401 3.529533 GTCCTCATCATTCTCACTGGTG 58.470 50.000 0.00 0.00 0.00 4.17
400 402 2.167281 CGTCCTCATCATTCTCACTGGT 59.833 50.000 0.00 0.00 0.00 4.00
401 403 2.428530 TCGTCCTCATCATTCTCACTGG 59.571 50.000 0.00 0.00 0.00 4.00
402 404 3.130164 AGTCGTCCTCATCATTCTCACTG 59.870 47.826 0.00 0.00 0.00 3.66
403 405 3.360867 AGTCGTCCTCATCATTCTCACT 58.639 45.455 0.00 0.00 0.00 3.41
404 406 3.701241 GAGTCGTCCTCATCATTCTCAC 58.299 50.000 0.90 0.00 40.17 3.51
405 407 2.356069 CGAGTCGTCCTCATCATTCTCA 59.644 50.000 3.82 0.00 40.48 3.27
406 408 2.614520 TCGAGTCGTCCTCATCATTCTC 59.385 50.000 13.12 0.00 40.48 2.87
407 409 2.644676 TCGAGTCGTCCTCATCATTCT 58.355 47.619 13.12 0.00 40.48 2.40
408 410 3.181495 ACTTCGAGTCGTCCTCATCATTC 60.181 47.826 13.12 0.00 40.48 2.67
409 411 2.755655 ACTTCGAGTCGTCCTCATCATT 59.244 45.455 13.12 0.00 40.48 2.57
410 412 2.370349 ACTTCGAGTCGTCCTCATCAT 58.630 47.619 13.12 0.00 40.48 2.45
411 413 1.822506 ACTTCGAGTCGTCCTCATCA 58.177 50.000 13.12 0.00 40.48 3.07
412 414 2.288458 CCTACTTCGAGTCGTCCTCATC 59.712 54.545 13.12 0.00 40.48 2.92
413 415 2.290464 CCTACTTCGAGTCGTCCTCAT 58.710 52.381 13.12 0.00 40.48 2.90
414 416 1.002888 ACCTACTTCGAGTCGTCCTCA 59.997 52.381 13.12 0.00 40.48 3.86
415 417 1.736612 ACCTACTTCGAGTCGTCCTC 58.263 55.000 13.12 0.00 36.80 3.71
416 418 2.083002 GAACCTACTTCGAGTCGTCCT 58.917 52.381 13.12 0.00 0.00 3.85
417 419 2.083002 AGAACCTACTTCGAGTCGTCC 58.917 52.381 13.12 0.00 33.60 4.79
418 420 3.932089 ACTAGAACCTACTTCGAGTCGTC 59.068 47.826 13.12 0.00 39.86 4.20
419 421 3.936564 ACTAGAACCTACTTCGAGTCGT 58.063 45.455 13.12 0.00 39.86 4.34
420 422 4.649977 CAACTAGAACCTACTTCGAGTCG 58.350 47.826 6.09 6.09 42.29 4.18
421 423 4.156373 AGCAACTAGAACCTACTTCGAGTC 59.844 45.833 0.00 0.00 42.29 3.36
422 424 4.080687 AGCAACTAGAACCTACTTCGAGT 58.919 43.478 0.00 0.00 44.29 4.18
423 425 4.664188 GAGCAACTAGAACCTACTTCGAG 58.336 47.826 0.00 0.00 37.57 4.04
424 426 3.126514 CGAGCAACTAGAACCTACTTCGA 59.873 47.826 0.00 0.00 33.60 3.71
425 427 3.119919 ACGAGCAACTAGAACCTACTTCG 60.120 47.826 0.00 0.00 33.60 3.79
426 428 4.437772 ACGAGCAACTAGAACCTACTTC 57.562 45.455 0.00 0.00 0.00 3.01
427 429 6.331061 CAATACGAGCAACTAGAACCTACTT 58.669 40.000 0.00 0.00 0.00 2.24
428 430 5.163540 CCAATACGAGCAACTAGAACCTACT 60.164 44.000 0.00 0.00 0.00 2.57
429 431 5.041940 CCAATACGAGCAACTAGAACCTAC 58.958 45.833 0.00 0.00 0.00 3.18
430 432 4.951715 TCCAATACGAGCAACTAGAACCTA 59.048 41.667 0.00 0.00 0.00 3.08
431 433 3.767673 TCCAATACGAGCAACTAGAACCT 59.232 43.478 0.00 0.00 0.00 3.50
432 434 3.864003 GTCCAATACGAGCAACTAGAACC 59.136 47.826 0.00 0.00 0.00 3.62
433 435 4.745649 AGTCCAATACGAGCAACTAGAAC 58.254 43.478 0.00 0.00 0.00 3.01
434 436 6.132791 CTAGTCCAATACGAGCAACTAGAA 57.867 41.667 0.00 0.00 38.86 2.10
435 437 5.752892 CTAGTCCAATACGAGCAACTAGA 57.247 43.478 0.00 0.00 38.86 2.43
469 471 7.918033 GCGTACATACTTCATCATAGCATAGAT 59.082 37.037 0.00 0.00 0.00 1.98
470 472 7.121315 AGCGTACATACTTCATCATAGCATAGA 59.879 37.037 0.00 0.00 0.00 1.98
471 473 7.254137 AGCGTACATACTTCATCATAGCATAG 58.746 38.462 0.00 0.00 0.00 2.23
472 474 7.158099 AGCGTACATACTTCATCATAGCATA 57.842 36.000 0.00 0.00 0.00 3.14
473 475 6.030548 AGCGTACATACTTCATCATAGCAT 57.969 37.500 0.00 0.00 0.00 3.79
474 476 5.453567 AGCGTACATACTTCATCATAGCA 57.546 39.130 0.00 0.00 0.00 3.49
475 477 7.008719 CACATAGCGTACATACTTCATCATAGC 59.991 40.741 0.00 0.00 0.00 2.97
476 478 8.237267 TCACATAGCGTACATACTTCATCATAG 58.763 37.037 0.00 0.00 0.00 2.23
477 479 8.106247 TCACATAGCGTACATACTTCATCATA 57.894 34.615 0.00 0.00 0.00 2.15
478 480 6.981722 TCACATAGCGTACATACTTCATCAT 58.018 36.000 0.00 0.00 0.00 2.45
479 481 6.385649 TCACATAGCGTACATACTTCATCA 57.614 37.500 0.00 0.00 0.00 3.07
480 482 6.918569 AGTTCACATAGCGTACATACTTCATC 59.081 38.462 0.00 0.00 0.00 2.92
481 483 6.806751 AGTTCACATAGCGTACATACTTCAT 58.193 36.000 0.00 0.00 0.00 2.57
482 484 6.203808 AGTTCACATAGCGTACATACTTCA 57.796 37.500 0.00 0.00 0.00 3.02
483 485 8.291032 AGATAGTTCACATAGCGTACATACTTC 58.709 37.037 0.00 0.00 0.00 3.01
484 486 8.167605 AGATAGTTCACATAGCGTACATACTT 57.832 34.615 0.00 0.00 0.00 2.24
485 487 7.747155 AGATAGTTCACATAGCGTACATACT 57.253 36.000 0.00 0.00 0.00 2.12
486 488 9.491934 CATAGATAGTTCACATAGCGTACATAC 57.508 37.037 0.00 0.00 0.00 2.39
487 489 9.227777 ACATAGATAGTTCACATAGCGTACATA 57.772 33.333 0.00 0.00 0.00 2.29
488 490 8.112016 ACATAGATAGTTCACATAGCGTACAT 57.888 34.615 0.00 0.00 0.00 2.29
489 491 7.506328 ACATAGATAGTTCACATAGCGTACA 57.494 36.000 0.00 0.00 0.00 2.90
490 492 9.705471 GATACATAGATAGTTCACATAGCGTAC 57.295 37.037 0.00 0.00 0.00 3.67
491 493 9.444600 TGATACATAGATAGTTCACATAGCGTA 57.555 33.333 0.00 0.00 0.00 4.42
492 494 8.336801 TGATACATAGATAGTTCACATAGCGT 57.663 34.615 0.00 0.00 0.00 5.07
493 495 9.794685 AATGATACATAGATAGTTCACATAGCG 57.205 33.333 0.00 0.00 0.00 4.26
551 553 9.669887 AACAACATATGCATTCCAAACAAATAT 57.330 25.926 3.54 0.00 0.00 1.28
552 554 9.149225 GAACAACATATGCATTCCAAACAAATA 57.851 29.630 3.54 0.00 0.00 1.40
553 555 7.148606 CGAACAACATATGCATTCCAAACAAAT 60.149 33.333 3.54 0.00 0.00 2.32
554 556 6.145209 CGAACAACATATGCATTCCAAACAAA 59.855 34.615 3.54 0.00 0.00 2.83
555 557 5.632764 CGAACAACATATGCATTCCAAACAA 59.367 36.000 3.54 0.00 0.00 2.83
556 558 5.159925 CGAACAACATATGCATTCCAAACA 58.840 37.500 3.54 0.00 0.00 2.83
557 559 5.060816 CACGAACAACATATGCATTCCAAAC 59.939 40.000 3.54 0.00 0.00 2.93
558 560 5.159925 CACGAACAACATATGCATTCCAAA 58.840 37.500 3.54 0.00 0.00 3.28
559 561 4.731720 CACGAACAACATATGCATTCCAA 58.268 39.130 3.54 0.00 0.00 3.53
560 562 3.427368 GCACGAACAACATATGCATTCCA 60.427 43.478 3.54 0.00 36.30 3.53
561 563 3.108144 GCACGAACAACATATGCATTCC 58.892 45.455 3.54 0.00 36.30 3.01
562 564 2.777845 CGCACGAACAACATATGCATTC 59.222 45.455 3.54 3.59 36.02 2.67
563 565 2.418280 TCGCACGAACAACATATGCATT 59.582 40.909 3.54 0.00 36.02 3.56
564 566 2.006169 TCGCACGAACAACATATGCAT 58.994 42.857 3.79 3.79 36.02 3.96
565 567 1.393196 CTCGCACGAACAACATATGCA 59.607 47.619 1.58 0.00 36.02 3.96
566 568 1.658596 TCTCGCACGAACAACATATGC 59.341 47.619 1.58 0.00 0.00 3.14
567 569 2.285256 GCTCTCGCACGAACAACATATG 60.285 50.000 0.00 0.00 35.78 1.78
568 570 1.927174 GCTCTCGCACGAACAACATAT 59.073 47.619 0.00 0.00 35.78 1.78
569 571 1.346365 GCTCTCGCACGAACAACATA 58.654 50.000 0.00 0.00 35.78 2.29
570 572 1.617755 CGCTCTCGCACGAACAACAT 61.618 55.000 0.00 0.00 35.30 2.71
571 573 2.300066 CGCTCTCGCACGAACAACA 61.300 57.895 0.00 0.00 35.30 3.33
572 574 2.465920 CGCTCTCGCACGAACAAC 59.534 61.111 0.00 0.00 35.30 3.32
589 591 4.842091 CAAATCTGGGCAGCGCGC 62.842 66.667 26.66 26.66 41.94 6.86
590 592 4.842091 GCAAATCTGGGCAGCGCG 62.842 66.667 0.00 0.00 0.00 6.86
591 593 3.751246 TGCAAATCTGGGCAGCGC 61.751 61.111 0.00 0.00 34.58 5.92
595 597 3.751246 GCGCTGCAAATCTGGGCA 61.751 61.111 0.00 0.00 46.73 5.36
596 598 4.503314 GGCGCTGCAAATCTGGGC 62.503 66.667 7.64 3.67 46.76 5.36
597 599 2.753043 AGGCGCTGCAAATCTGGG 60.753 61.111 7.64 0.00 0.00 4.45
598 600 2.488355 CAGGCGCTGCAAATCTGG 59.512 61.111 7.64 0.00 0.00 3.86
611 613 4.074526 TGAGTCGCTCCAGCAGGC 62.075 66.667 0.00 0.00 42.21 4.85
612 614 2.125753 GTGAGTCGCTCCAGCAGG 60.126 66.667 0.00 0.00 42.21 4.85
613 615 2.505777 CGTGAGTCGCTCCAGCAG 60.506 66.667 1.58 0.00 42.21 4.24
622 624 0.782384 AAAGTTTAGCGCGTGAGTCG 59.218 50.000 8.43 0.00 43.12 4.18
623 625 1.790623 TGAAAGTTTAGCGCGTGAGTC 59.209 47.619 8.43 0.00 0.00 3.36
624 626 1.860676 TGAAAGTTTAGCGCGTGAGT 58.139 45.000 8.43 0.00 0.00 3.41
625 627 2.033236 TGTTGAAAGTTTAGCGCGTGAG 60.033 45.455 8.43 0.00 0.00 3.51
626 628 1.934525 TGTTGAAAGTTTAGCGCGTGA 59.065 42.857 8.43 0.00 0.00 4.35
627 629 2.286184 ACTGTTGAAAGTTTAGCGCGTG 60.286 45.455 8.43 0.00 0.00 5.34
628 630 1.937899 ACTGTTGAAAGTTTAGCGCGT 59.062 42.857 8.43 0.00 0.00 6.01
629 631 2.560896 GACTGTTGAAAGTTTAGCGCG 58.439 47.619 0.00 0.00 0.00 6.86
630 632 2.560896 CGACTGTTGAAAGTTTAGCGC 58.439 47.619 0.00 0.00 0.00 5.92
631 633 2.221055 AGCGACTGTTGAAAGTTTAGCG 59.779 45.455 0.00 0.00 33.50 4.26
632 634 3.545633 CAGCGACTGTTGAAAGTTTAGC 58.454 45.455 0.00 0.00 0.00 3.09
633 635 3.807622 TCCAGCGACTGTTGAAAGTTTAG 59.192 43.478 0.00 0.00 0.00 1.85
634 636 3.799366 TCCAGCGACTGTTGAAAGTTTA 58.201 40.909 0.00 0.00 0.00 2.01
635 637 2.614057 CTCCAGCGACTGTTGAAAGTTT 59.386 45.455 0.00 0.00 0.00 2.66
636 638 2.213499 CTCCAGCGACTGTTGAAAGTT 58.787 47.619 0.00 0.00 0.00 2.66
637 639 1.871080 CTCCAGCGACTGTTGAAAGT 58.129 50.000 0.00 0.00 0.00 2.66
638 640 0.514691 GCTCCAGCGACTGTTGAAAG 59.485 55.000 0.00 0.00 0.00 2.62
639 641 0.179059 TGCTCCAGCGACTGTTGAAA 60.179 50.000 0.00 0.00 45.83 2.69
640 642 0.179059 TTGCTCCAGCGACTGTTGAA 60.179 50.000 0.00 0.00 45.83 2.69
641 643 0.601046 CTTGCTCCAGCGACTGTTGA 60.601 55.000 0.00 0.00 45.83 3.18
642 644 1.864862 CTTGCTCCAGCGACTGTTG 59.135 57.895 6.19 0.00 45.83 3.33
643 645 1.963338 GCTTGCTCCAGCGACTGTT 60.963 57.895 6.19 0.00 45.83 3.16
644 646 2.358003 GCTTGCTCCAGCGACTGT 60.358 61.111 6.19 0.00 45.83 3.55
650 652 4.233635 CGATGCGCTTGCTCCAGC 62.234 66.667 9.73 0.00 40.12 4.85
668 670 3.091022 GTCAGTTTTTGCGCGGCG 61.091 61.111 19.62 19.62 0.00 6.46
669 671 3.091022 CGTCAGTTTTTGCGCGGC 61.091 61.111 8.83 0.00 0.00 6.53
670 672 1.721133 GTCGTCAGTTTTTGCGCGG 60.721 57.895 8.83 0.00 0.00 6.46
671 673 1.721133 GGTCGTCAGTTTTTGCGCG 60.721 57.895 0.00 0.00 0.00 6.86
672 674 1.370051 GGGTCGTCAGTTTTTGCGC 60.370 57.895 0.00 0.00 0.00 6.09
673 675 1.083015 CGGGTCGTCAGTTTTTGCG 60.083 57.895 0.00 0.00 0.00 4.85
674 676 1.370051 GCGGGTCGTCAGTTTTTGC 60.370 57.895 0.00 0.00 0.00 3.68
675 677 1.083015 CGCGGGTCGTCAGTTTTTG 60.083 57.895 0.00 0.00 0.00 2.44
676 678 3.326109 CGCGGGTCGTCAGTTTTT 58.674 55.556 0.00 0.00 0.00 1.94
685 687 2.764251 CTTTTGAAGCACGCGGGTCG 62.764 60.000 11.45 0.00 45.38 4.79
686 688 1.082104 CTTTTGAAGCACGCGGGTC 60.082 57.895 11.45 0.00 0.00 4.46
687 689 2.551912 CCTTTTGAAGCACGCGGGT 61.552 57.895 11.45 0.00 0.00 5.28
688 690 2.255252 CCTTTTGAAGCACGCGGG 59.745 61.111 12.47 7.92 0.00 6.13
689 691 2.070654 AACCCTTTTGAAGCACGCGG 62.071 55.000 12.47 0.00 0.00 6.46
690 692 0.248866 AAACCCTTTTGAAGCACGCG 60.249 50.000 3.53 3.53 0.00 6.01
691 693 1.934589 AAAACCCTTTTGAAGCACGC 58.065 45.000 0.00 0.00 0.00 5.34
692 694 3.489416 GCTAAAAACCCTTTTGAAGCACG 59.511 43.478 8.89 0.00 39.94 5.34
693 695 3.489416 CGCTAAAAACCCTTTTGAAGCAC 59.511 43.478 12.16 0.00 40.06 4.40
694 696 3.712187 CGCTAAAAACCCTTTTGAAGCA 58.288 40.909 12.16 0.00 40.06 3.91
695 697 2.475111 GCGCTAAAAACCCTTTTGAAGC 59.525 45.455 0.00 5.55 38.28 3.86
696 698 2.724174 CGCGCTAAAAACCCTTTTGAAG 59.276 45.455 5.56 0.00 35.50 3.02
697 699 2.733517 CGCGCTAAAAACCCTTTTGAA 58.266 42.857 5.56 0.00 35.50 2.69
698 700 1.600912 GCGCGCTAAAAACCCTTTTGA 60.601 47.619 26.67 0.00 35.50 2.69
699 701 0.781787 GCGCGCTAAAAACCCTTTTG 59.218 50.000 26.67 0.00 35.50 2.44
700 702 0.319211 GGCGCGCTAAAAACCCTTTT 60.319 50.000 32.29 0.00 38.34 2.27
701 703 1.287815 GGCGCGCTAAAAACCCTTT 59.712 52.632 32.29 0.00 0.00 3.11
702 704 2.959372 GGCGCGCTAAAAACCCTT 59.041 55.556 32.29 0.00 0.00 3.95
703 705 3.428282 CGGCGCGCTAAAAACCCT 61.428 61.111 32.29 0.00 0.00 4.34
718 720 4.147322 CAGCCAAGTTACGCGCGG 62.147 66.667 35.22 15.38 0.00 6.46
719 721 2.950172 AACAGCCAAGTTACGCGCG 61.950 57.895 30.96 30.96 0.00 6.86
720 722 1.440353 CAACAGCCAAGTTACGCGC 60.440 57.895 5.73 0.00 0.00 6.86
721 723 1.206578 CCAACAGCCAAGTTACGCG 59.793 57.895 3.53 3.53 0.00 6.01
722 724 1.135689 CATCCAACAGCCAAGTTACGC 60.136 52.381 0.00 0.00 0.00 4.42
723 725 1.135689 GCATCCAACAGCCAAGTTACG 60.136 52.381 0.00 0.00 0.00 3.18
724 726 2.162408 GAGCATCCAACAGCCAAGTTAC 59.838 50.000 0.00 0.00 0.00 2.50
725 727 2.040278 AGAGCATCCAACAGCCAAGTTA 59.960 45.455 0.00 0.00 33.66 2.24
726 728 1.202976 AGAGCATCCAACAGCCAAGTT 60.203 47.619 0.00 0.00 33.66 2.66
727 729 0.403271 AGAGCATCCAACAGCCAAGT 59.597 50.000 0.00 0.00 33.66 3.16
728 730 1.542492 AAGAGCATCCAACAGCCAAG 58.458 50.000 0.00 0.00 33.66 3.61
729 731 2.877097 TAAGAGCATCCAACAGCCAA 57.123 45.000 0.00 0.00 33.66 4.52
730 732 3.455910 AGTATAAGAGCATCCAACAGCCA 59.544 43.478 0.00 0.00 33.66 4.75
731 733 4.078639 AGTATAAGAGCATCCAACAGCC 57.921 45.455 0.00 0.00 33.66 4.85
732 734 5.848406 AGTAGTATAAGAGCATCCAACAGC 58.152 41.667 0.00 0.00 33.66 4.40
733 735 8.414003 TGTTAGTAGTATAAGAGCATCCAACAG 58.586 37.037 0.00 0.00 33.66 3.16
734 736 8.301252 TGTTAGTAGTATAAGAGCATCCAACA 57.699 34.615 0.00 0.00 33.66 3.33
735 737 9.250624 CTTGTTAGTAGTATAAGAGCATCCAAC 57.749 37.037 0.00 0.00 33.66 3.77
736 738 8.978472 ACTTGTTAGTAGTATAAGAGCATCCAA 58.022 33.333 8.37 0.00 29.90 3.53
737 739 8.534954 ACTTGTTAGTAGTATAAGAGCATCCA 57.465 34.615 8.37 0.00 29.90 3.41
857 866 5.139435 TCACTCGCATATATGAAGGAAGG 57.861 43.478 17.10 5.37 0.00 3.46
858 867 5.777802 ACTCACTCGCATATATGAAGGAAG 58.222 41.667 17.10 14.22 0.00 3.46
859 868 5.791336 ACTCACTCGCATATATGAAGGAA 57.209 39.130 17.10 4.91 0.00 3.36
860 869 5.279006 GGAACTCACTCGCATATATGAAGGA 60.279 44.000 17.10 8.77 0.00 3.36
861 870 4.926238 GGAACTCACTCGCATATATGAAGG 59.074 45.833 17.10 7.20 0.00 3.46
862 871 5.777802 AGGAACTCACTCGCATATATGAAG 58.222 41.667 17.10 14.00 0.00 3.02
863 872 5.791336 AGGAACTCACTCGCATATATGAA 57.209 39.130 17.10 2.71 0.00 2.57
894 930 1.021390 CAGTTTGGAGGCTAGGCACG 61.021 60.000 19.70 0.86 0.00 5.34
895 931 0.324943 TCAGTTTGGAGGCTAGGCAC 59.675 55.000 19.70 12.43 0.00 5.01
954 1093 1.454479 CTAGTGGGCTGGCATTGGG 60.454 63.158 2.88 0.00 0.00 4.12
1045 1184 1.153549 GCCGGAGCGAAGATTCACT 60.154 57.895 5.05 0.00 0.00 3.41
1096 1244 2.993853 CCTGTGAGGGAAGGAGCC 59.006 66.667 0.00 0.00 35.40 4.70
1125 1273 0.887933 CCATTTCCGGACTTTGGTGG 59.112 55.000 1.83 2.44 0.00 4.61
1128 1276 2.359900 CTCTCCATTTCCGGACTTTGG 58.640 52.381 16.87 16.87 0.00 3.28
1138 1286 2.499289 TCTGGACTGAGCTCTCCATTTC 59.501 50.000 21.47 6.69 35.95 2.17
1414 1562 4.821589 GAACCCGAGGCTGCCGAG 62.822 72.222 13.96 11.14 0.00 4.63
1429 1577 4.776322 CGCCAGCCCGGACATGAA 62.776 66.667 0.73 0.00 36.56 2.57
2175 2323 1.138247 CGTACGTACCCAGAGCACC 59.862 63.158 19.67 0.00 0.00 5.01
2234 2382 3.958704 TGTGCGTGTTAATTTGGTGAAG 58.041 40.909 0.00 0.00 0.00 3.02
2251 2399 4.873817 TGCCATGCTGATAATTTATGTGC 58.126 39.130 0.00 0.00 0.00 4.57
2366 2590 6.016111 CGCTAGCTAGCTTTTTAAAAGTGTC 58.984 40.000 36.02 8.63 46.85 3.67
2367 2591 5.469084 ACGCTAGCTAGCTTTTTAAAAGTGT 59.531 36.000 36.02 20.50 46.85 3.55
2432 2660 7.933577 AGTGCTCTATCCATTAAAATGATTCGA 59.066 33.333 4.25 0.00 38.70 3.71
2741 3001 2.945984 GTCCACGTACGTGTCCGA 59.054 61.111 37.86 27.94 44.02 4.55
2743 3003 2.126734 CCGTCCACGTACGTGTCC 60.127 66.667 37.86 28.07 44.02 4.02
3153 3422 0.323725 TGTAGTAGGGACGGTGGGTC 60.324 60.000 0.00 0.00 45.31 4.46
3341 3627 1.072331 ACACCATGTGGAACCTCACTC 59.928 52.381 5.96 0.00 37.94 3.51
3395 3681 1.548719 ACTATAGCACACTCCGCACAA 59.451 47.619 0.00 0.00 0.00 3.33
3400 3686 2.286831 CGGTGTACTATAGCACACTCCG 60.287 54.545 27.52 21.95 43.64 4.63
3410 3696 4.787260 TGACAAGCAACGGTGTACTATA 57.213 40.909 0.66 0.00 0.00 1.31
3473 3759 2.166254 CCACAAAACAGTTGCTGAGGTT 59.834 45.455 2.91 0.00 35.18 3.50
3485 3771 5.659079 AGGAGACCATAAAAACCACAAAACA 59.341 36.000 0.00 0.00 0.00 2.83
3570 3859 4.207891 AGTGACTGCCGTGATATTTTCT 57.792 40.909 0.00 0.00 0.00 2.52
3571 3860 4.946784 AAGTGACTGCCGTGATATTTTC 57.053 40.909 0.00 0.00 0.00 2.29
3576 3865 3.745975 CAGAAAAAGTGACTGCCGTGATA 59.254 43.478 0.00 0.00 0.00 2.15
3617 3915 2.892425 CGGAGTTCCTCATGCCGC 60.892 66.667 0.00 0.00 35.17 6.53
3661 3959 4.465480 TTATCGCTGGCTGCCGCA 62.465 61.111 26.43 17.42 38.78 5.69
3683 3981 2.432874 TCAAGTTTCGAACTCACTCCCA 59.567 45.455 0.00 0.00 41.91 4.37
3689 3987 0.850217 CGCGTCAAGTTTCGAACTCA 59.150 50.000 0.00 0.00 41.91 3.41
3762 4086 4.920112 CCCACCGTCGTGTTGGCA 62.920 66.667 0.00 0.00 38.41 4.92
3786 4110 1.038130 CCTCACCCTACCTCGACCTG 61.038 65.000 0.00 0.00 0.00 4.00
3837 4161 3.564027 CAATCGCCGGCCTTCGTC 61.564 66.667 23.46 0.00 37.11 4.20
3860 4292 0.114560 TCTCCCTTTCCTCCTCACGT 59.885 55.000 0.00 0.00 0.00 4.49
3868 4300 2.224305 CGTGACAGTTTCTCCCTTTCCT 60.224 50.000 0.00 0.00 0.00 3.36
3873 4307 0.763223 ACCCGTGACAGTTTCTCCCT 60.763 55.000 0.00 0.00 0.00 4.20
3874 4308 0.602905 CACCCGTGACAGTTTCTCCC 60.603 60.000 0.00 0.00 0.00 4.30
3879 4313 0.834612 TTCTCCACCCGTGACAGTTT 59.165 50.000 0.00 0.00 0.00 2.66
3887 4321 2.704065 TCTTTCTTCTTTCTCCACCCGT 59.296 45.455 0.00 0.00 0.00 5.28
3941 4375 1.674519 CGGTCCATCAACATCCAACGA 60.675 52.381 0.00 0.00 0.00 3.85
4081 4515 3.214328 CACAAAGGGCAAACTACAGAGT 58.786 45.455 0.00 0.00 37.59 3.24
4082 4516 2.030805 GCACAAAGGGCAAACTACAGAG 60.031 50.000 0.00 0.00 0.00 3.35
4083 4517 1.953686 GCACAAAGGGCAAACTACAGA 59.046 47.619 0.00 0.00 0.00 3.41
4085 4519 1.769026 TGCACAAAGGGCAAACTACA 58.231 45.000 0.00 0.00 38.54 2.74
4092 4526 1.754621 TTCGGTTGCACAAAGGGCA 60.755 52.632 0.00 0.00 40.00 5.36
4093 4527 1.299850 GTTCGGTTGCACAAAGGGC 60.300 57.895 0.00 0.00 0.00 5.19
4094 4528 0.310854 GAGTTCGGTTGCACAAAGGG 59.689 55.000 0.00 0.00 0.00 3.95
4095 4529 0.310854 GGAGTTCGGTTGCACAAAGG 59.689 55.000 0.00 0.00 0.00 3.11
4096 4530 1.002468 CTGGAGTTCGGTTGCACAAAG 60.002 52.381 0.00 0.00 0.00 2.77
4097 4531 1.021202 CTGGAGTTCGGTTGCACAAA 58.979 50.000 0.00 0.00 0.00 2.83
4098 4532 0.179234 TCTGGAGTTCGGTTGCACAA 59.821 50.000 0.00 0.00 0.00 3.33
4099 4533 0.249868 CTCTGGAGTTCGGTTGCACA 60.250 55.000 0.00 0.00 0.00 4.57
4100 4534 2.533318 CTCTGGAGTTCGGTTGCAC 58.467 57.895 0.00 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.