Multiple sequence alignment - TraesCS4B01G328900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G328900 chr4B 100.000 3178 0 0 1 3178 619788944 619785767 0.000000e+00 5869.0
1 TraesCS4B01G328900 chr4B 91.646 1987 93 23 311 2256 619775601 619773647 0.000000e+00 2682.0
2 TraesCS4B01G328900 chr4B 83.439 2047 201 74 211 2207 619936531 619934573 0.000000e+00 1775.0
3 TraesCS4B01G328900 chr4B 89.843 1270 109 11 1224 2485 619659262 619658005 0.000000e+00 1613.0
4 TraesCS4B01G328900 chr4B 84.993 1426 128 53 776 2177 619590154 619588791 0.000000e+00 1369.0
5 TraesCS4B01G328900 chr4B 95.686 255 11 0 72 326 619776729 619776475 8.200000e-111 411.0
6 TraesCS4B01G328900 chr4B 81.305 567 42 25 657 1193 619659794 619659262 4.940000e-108 401.0
7 TraesCS4B01G328900 chr4B 85.294 170 15 4 2330 2489 619934476 619934307 1.960000e-37 167.0
8 TraesCS4B01G328900 chr4B 95.833 72 3 0 1 72 139934120 139934191 2.000000e-22 117.0
9 TraesCS4B01G328900 chr4B 97.059 68 2 0 4 71 171654563 171654496 7.200000e-22 115.0
10 TraesCS4B01G328900 chr4B 97.059 68 2 0 4 71 171656001 171655934 7.200000e-22 115.0
11 TraesCS4B01G328900 chr4B 91.045 67 4 2 2274 2338 619934569 619934503 4.370000e-14 89.8
12 TraesCS4B01G328900 chr5A 90.924 1807 124 23 284 2071 666657755 666655970 0.000000e+00 2392.0
13 TraesCS4B01G328900 chr5A 85.707 1861 139 66 447 2256 666684229 666682445 0.000000e+00 1845.0
14 TraesCS4B01G328900 chr5A 86.173 1432 130 44 776 2188 666589039 666587657 0.000000e+00 1485.0
15 TraesCS4B01G328900 chr5A 85.582 1408 143 37 776 2177 666525782 666524429 0.000000e+00 1421.0
16 TraesCS4B01G328900 chr5A 89.840 187 17 2 73 259 666658138 666657954 4.100000e-59 239.0
17 TraesCS4B01G328900 chr5A 83.333 72 9 3 2267 2338 666679780 666679712 2.650000e-06 63.9
18 TraesCS4B01G328900 chr4D 85.875 1869 132 59 657 2485 485764842 485763066 0.000000e+00 1868.0
19 TraesCS4B01G328900 chr4D 86.591 1417 125 41 776 2177 485683901 485682535 0.000000e+00 1504.0
20 TraesCS4B01G328900 chr4D 88.393 112 11 2 2482 2591 438220392 438220503 1.990000e-27 134.0
21 TraesCS4B01G328900 chr4D 93.590 78 4 1 1 78 500090839 500090763 7.200000e-22 115.0
22 TraesCS4B01G328900 chr6B 95.769 709 18 6 2482 3178 720199966 720199258 0.000000e+00 1133.0
23 TraesCS4B01G328900 chr6B 94.857 525 17 2 2482 2996 688882626 688883150 0.000000e+00 811.0
24 TraesCS4B01G328900 chr6B 99.324 148 1 0 3031 3178 688883354 688883501 5.230000e-68 268.0
25 TraesCS4B01G328900 chr6B 82.192 292 46 5 2893 3178 450059555 450059846 2.450000e-61 246.0
26 TraesCS4B01G328900 chr5B 95.198 708 23 6 2482 3178 56825995 56826702 0.000000e+00 1109.0
27 TraesCS4B01G328900 chr5B 95.833 72 3 0 1 72 677748573 677748644 2.000000e-22 117.0
28 TraesCS4B01G328900 chr5B 86.239 109 12 3 2484 2591 492082346 492082452 7.200000e-22 115.0
29 TraesCS4B01G328900 chr3B 95.056 708 23 8 2482 3178 744590397 744589691 0.000000e+00 1103.0
30 TraesCS4B01G328900 chr3B 94.922 709 24 6 2482 3178 746856562 746857270 0.000000e+00 1099.0
31 TraesCS4B01G328900 chr3B 88.288 111 12 1 2482 2591 630009597 630009707 7.150000e-27 132.0
32 TraesCS4B01G328900 chr7A 90.661 257 21 2 2893 3146 682758937 682759193 3.930000e-89 339.0
33 TraesCS4B01G328900 chr7A 79.621 211 29 5 2487 2683 220113202 220112992 4.270000e-29 139.0
34 TraesCS4B01G328900 chr1A 85.714 315 35 6 2846 3154 381816604 381816914 1.100000e-84 324.0
35 TraesCS4B01G328900 chr2D 84.112 214 25 2 2480 2684 493608921 493609134 6.950000e-47 198.0
36 TraesCS4B01G328900 chr2B 79.724 217 39 4 2920 3131 53910065 53910281 5.490000e-33 152.0
37 TraesCS4B01G328900 chr4A 80.288 208 20 8 2486 2684 477947857 477948052 1.540000e-28 137.0
38 TraesCS4B01G328900 chr6D 95.833 72 3 0 1 72 168291955 168292026 2.000000e-22 117.0
39 TraesCS4B01G328900 chr6D 97.059 68 2 0 4 71 465970418 465970351 7.200000e-22 115.0
40 TraesCS4B01G328900 chr1B 97.059 68 2 0 4 71 243423952 243423885 7.200000e-22 115.0
41 TraesCS4B01G328900 chr1B 95.775 71 3 0 1 71 278715223 278715293 7.200000e-22 115.0
42 TraesCS4B01G328900 chr2A 78.519 135 14 4 3044 3178 714059951 714059832 1.220000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G328900 chr4B 619785767 619788944 3177 True 5869.000000 5869 100.000000 1 3178 1 chr4B.!!$R2 3177
1 TraesCS4B01G328900 chr4B 619773647 619776729 3082 True 1546.500000 2682 93.666000 72 2256 2 chr4B.!!$R5 2184
2 TraesCS4B01G328900 chr4B 619588791 619590154 1363 True 1369.000000 1369 84.993000 776 2177 1 chr4B.!!$R1 1401
3 TraesCS4B01G328900 chr4B 619658005 619659794 1789 True 1007.000000 1613 85.574000 657 2485 2 chr4B.!!$R4 1828
4 TraesCS4B01G328900 chr4B 619934307 619936531 2224 True 677.266667 1775 86.592667 211 2489 3 chr4B.!!$R6 2278
5 TraesCS4B01G328900 chr5A 666587657 666589039 1382 True 1485.000000 1485 86.173000 776 2188 1 chr5A.!!$R2 1412
6 TraesCS4B01G328900 chr5A 666524429 666525782 1353 True 1421.000000 1421 85.582000 776 2177 1 chr5A.!!$R1 1401
7 TraesCS4B01G328900 chr5A 666655970 666658138 2168 True 1315.500000 2392 90.382000 73 2071 2 chr5A.!!$R3 1998
8 TraesCS4B01G328900 chr5A 666679712 666684229 4517 True 954.450000 1845 84.520000 447 2338 2 chr5A.!!$R4 1891
9 TraesCS4B01G328900 chr4D 485763066 485764842 1776 True 1868.000000 1868 85.875000 657 2485 1 chr4D.!!$R2 1828
10 TraesCS4B01G328900 chr4D 485682535 485683901 1366 True 1504.000000 1504 86.591000 776 2177 1 chr4D.!!$R1 1401
11 TraesCS4B01G328900 chr6B 720199258 720199966 708 True 1133.000000 1133 95.769000 2482 3178 1 chr6B.!!$R1 696
12 TraesCS4B01G328900 chr6B 688882626 688883501 875 False 539.500000 811 97.090500 2482 3178 2 chr6B.!!$F2 696
13 TraesCS4B01G328900 chr5B 56825995 56826702 707 False 1109.000000 1109 95.198000 2482 3178 1 chr5B.!!$F1 696
14 TraesCS4B01G328900 chr3B 744589691 744590397 706 True 1103.000000 1103 95.056000 2482 3178 1 chr3B.!!$R1 696
15 TraesCS4B01G328900 chr3B 746856562 746857270 708 False 1099.000000 1099 94.922000 2482 3178 1 chr3B.!!$F2 696

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
31 32 0.107361 CCCCTAAGTAAACCTGCCCG 60.107 60.0 0.00 0.0 0.00 6.13 F
843 1970 0.238553 GCTTTCTGCAGGAAACCGAC 59.761 55.0 15.13 0.0 38.81 4.79 F
950 2120 0.316204 AGCGTAACAAGTACAGCGGT 59.684 50.0 0.00 0.0 37.33 5.68 F
1254 2473 0.663153 TCGCAGTGATCGATCGATGT 59.337 50.0 33.86 13.6 34.60 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1450 2670 0.037605 GAGACCGATGACCCGTTTGT 60.038 55.000 0.00 0.0 0.0 2.83 R
1734 2966 1.134560 GGACGGCGACAGATAGAAGTT 59.865 52.381 16.62 0.0 0.0 2.66 R
1976 3223 1.153369 CGTCATCCCATGGTTCGCT 60.153 57.895 11.73 0.0 0.0 4.93 R
2838 6807 1.271597 ACAAATCCCACTGTCCTGCTC 60.272 52.381 0.00 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.991972 GGCCAAGCCCCTAAGTAAA 57.008 52.632 0.00 0.00 44.06 2.01
24 25 1.471119 GGCCAAGCCCCTAAGTAAAC 58.529 55.000 0.00 0.00 44.06 2.01
25 26 1.471119 GCCAAGCCCCTAAGTAAACC 58.529 55.000 0.00 0.00 0.00 3.27
26 27 1.005569 GCCAAGCCCCTAAGTAAACCT 59.994 52.381 0.00 0.00 0.00 3.50
27 28 2.723273 CCAAGCCCCTAAGTAAACCTG 58.277 52.381 0.00 0.00 0.00 4.00
28 29 2.092323 CAAGCCCCTAAGTAAACCTGC 58.908 52.381 0.00 0.00 0.00 4.85
29 30 0.624254 AGCCCCTAAGTAAACCTGCC 59.376 55.000 0.00 0.00 0.00 4.85
30 31 0.395311 GCCCCTAAGTAAACCTGCCC 60.395 60.000 0.00 0.00 0.00 5.36
31 32 0.107361 CCCCTAAGTAAACCTGCCCG 60.107 60.000 0.00 0.00 0.00 6.13
32 33 0.107361 CCCTAAGTAAACCTGCCCGG 60.107 60.000 0.00 0.00 39.35 5.73
56 57 1.705873 CCTCCTACGGGCATAAGTCT 58.294 55.000 0.00 0.00 0.00 3.24
57 58 1.341531 CCTCCTACGGGCATAAGTCTG 59.658 57.143 0.00 0.00 0.00 3.51
58 59 0.750850 TCCTACGGGCATAAGTCTGC 59.249 55.000 0.00 0.00 41.53 4.26
64 65 4.126524 GCATAAGTCTGCCCGGTC 57.873 61.111 0.00 0.00 36.10 4.79
65 66 1.883084 GCATAAGTCTGCCCGGTCG 60.883 63.158 0.00 0.00 36.10 4.79
66 67 1.515954 CATAAGTCTGCCCGGTCGT 59.484 57.895 0.00 0.00 0.00 4.34
67 68 0.742505 CATAAGTCTGCCCGGTCGTA 59.257 55.000 0.00 0.00 0.00 3.43
68 69 1.135527 CATAAGTCTGCCCGGTCGTAA 59.864 52.381 0.00 0.00 0.00 3.18
69 70 0.527565 TAAGTCTGCCCGGTCGTAAC 59.472 55.000 0.00 0.00 0.00 2.50
70 71 1.466025 AAGTCTGCCCGGTCGTAACA 61.466 55.000 0.00 0.00 0.00 2.41
104 105 4.324991 AACTTGGACGGGCGGGTC 62.325 66.667 0.00 0.00 36.18 4.46
106 107 4.323477 CTTGGACGGGCGGGTCAA 62.323 66.667 9.15 6.06 38.70 3.18
153 154 5.853081 AGCGTAAAAGTTTGCAAACAAAAG 58.147 33.333 36.46 24.17 46.94 2.27
249 250 9.177608 ACAAACATGTGCATTGTAATATCTAGT 57.822 29.630 11.74 0.00 35.63 2.57
274 333 1.142688 AACTGGGCAGAGAATGGGGT 61.143 55.000 0.00 0.00 0.00 4.95
342 1405 2.203139 TGCACGGTGGTTCAGTGG 60.203 61.111 10.60 0.00 41.32 4.00
390 1453 6.822667 ATACAGCATCATTCTGTTGAACAA 57.177 33.333 0.00 0.00 41.61 2.83
423 1488 2.872245 TCTGGAAAAACAGCTGTCGAAG 59.128 45.455 21.95 11.98 38.36 3.79
430 1495 4.744795 AAACAGCTGTCGAAGAGGATAT 57.255 40.909 21.95 0.00 36.95 1.63
431 1496 4.744795 AACAGCTGTCGAAGAGGATATT 57.255 40.909 21.95 0.00 36.95 1.28
432 1497 5.854010 AACAGCTGTCGAAGAGGATATTA 57.146 39.130 21.95 0.00 36.95 0.98
620 1716 0.607489 CACCCAAGAACAGGCTCTGG 60.607 60.000 7.06 0.00 35.51 3.86
703 1808 9.755804 ATCTGTGTGACTACAAATATCTACATG 57.244 33.333 0.00 0.00 38.82 3.21
743 1849 7.133891 AGTCTTCAAAGGACGTGATTAATTG 57.866 36.000 0.00 0.00 38.58 2.32
812 1937 2.568090 GGTGCCATGAAACTGCGG 59.432 61.111 0.00 0.00 0.00 5.69
842 1969 2.629002 GCTTTCTGCAGGAAACCGA 58.371 52.632 15.13 0.00 38.81 4.69
843 1970 0.238553 GCTTTCTGCAGGAAACCGAC 59.761 55.000 15.13 0.00 38.81 4.79
845 1972 1.801178 CTTTCTGCAGGAAACCGACTC 59.199 52.381 15.13 0.00 38.81 3.36
929 2099 0.609957 CATCCACCTTCCAGCAGCAA 60.610 55.000 0.00 0.00 0.00 3.91
934 2104 2.559840 CTTCCAGCAGCAACAGCG 59.440 61.111 0.00 0.00 37.01 5.18
950 2120 0.316204 AGCGTAACAAGTACAGCGGT 59.684 50.000 0.00 0.00 37.33 5.68
982 2152 4.398673 ACTTCGAGTAGTAAGTGGATCACC 59.601 45.833 0.00 0.00 34.70 4.02
1254 2473 0.663153 TCGCAGTGATCGATCGATGT 59.337 50.000 33.86 13.60 34.60 3.06
1271 2490 3.304726 CGATGTATACATGTCCGAGCAGT 60.305 47.826 22.93 0.00 36.57 4.40
1466 2686 1.302192 CCACAAACGGGTCATCGGT 60.302 57.895 0.00 0.00 0.00 4.69
1957 3204 3.324108 GGCCGTGAACCCACCCTA 61.324 66.667 0.00 0.00 40.12 3.53
1992 3239 1.451927 GCAGCGAACCATGGGATGA 60.452 57.895 18.09 0.00 0.00 2.92
2231 3485 5.008019 TGCAAAACTTTGAAGCAGAGTAGAG 59.992 40.000 6.37 0.00 40.55 2.43
2233 3487 3.326836 ACTTTGAAGCAGAGTAGAGGC 57.673 47.619 0.00 0.00 26.81 4.70
2234 3488 2.903135 ACTTTGAAGCAGAGTAGAGGCT 59.097 45.455 0.00 0.00 40.14 4.58
2256 3511 5.335191 GCTTAGCTGTAAATTCAGTTGTGCT 60.335 40.000 0.00 0.00 37.70 4.40
2257 3512 6.633500 TTAGCTGTAAATTCAGTTGTGCTT 57.367 33.333 0.00 0.00 37.70 3.91
2258 3513 4.863491 AGCTGTAAATTCAGTTGTGCTTG 58.137 39.130 0.00 0.00 37.70 4.01
2259 3514 4.339247 AGCTGTAAATTCAGTTGTGCTTGT 59.661 37.500 0.00 0.00 37.70 3.16
2260 3515 4.442073 GCTGTAAATTCAGTTGTGCTTGTG 59.558 41.667 0.00 0.00 37.70 3.33
2261 3516 4.358851 TGTAAATTCAGTTGTGCTTGTGC 58.641 39.130 0.00 0.00 40.20 4.57
2274 6189 4.028852 TGCTTGTGCATAGTACTACGAG 57.971 45.455 4.31 5.61 45.31 4.18
2275 6190 3.442625 TGCTTGTGCATAGTACTACGAGT 59.557 43.478 4.31 0.00 45.31 4.18
2279 6194 5.980698 TGTGCATAGTACTACGAGTCTAC 57.019 43.478 4.31 0.00 0.00 2.59
2280 6195 4.505556 TGTGCATAGTACTACGAGTCTACG 59.494 45.833 4.31 0.00 39.31 3.51
2319 6234 4.795795 TGTTTAACATGACAGTTTGCAACG 59.204 37.500 0.00 0.00 36.23 4.10
2321 6236 3.338818 AACATGACAGTTTGCAACGAG 57.661 42.857 0.00 0.00 36.23 4.18
2323 6238 1.872952 CATGACAGTTTGCAACGAGGA 59.127 47.619 0.00 0.00 36.23 3.71
2352 6302 9.423061 GCAATGAATTAACTTATGGAACTGTTT 57.577 29.630 0.00 0.00 0.00 2.83
2551 6511 1.407618 CTCCACATCCGTTGGATCGTA 59.592 52.381 0.00 0.00 40.98 3.43
2567 6527 5.302823 TGGATCGTATGTTGATCAGACAGAT 59.697 40.000 13.58 11.20 43.21 2.90
2635 6604 5.888412 GTTTCAGAAAACATTCGTGCAAT 57.112 34.783 0.00 0.00 43.52 3.56
2838 6807 5.521735 CCTCTTGGTTTCAGAGATACAATCG 59.478 44.000 0.00 0.00 31.79 3.34
2937 6906 1.504275 AACCCAGGCTTCCAGATGCT 61.504 55.000 5.62 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.005569 AGGTTTACTTAGGGGCTTGGC 59.994 52.381 0.00 0.00 0.00 4.52
7 8 2.723273 CAGGTTTACTTAGGGGCTTGG 58.277 52.381 0.00 0.00 0.00 3.61
8 9 2.092323 GCAGGTTTACTTAGGGGCTTG 58.908 52.381 0.00 0.00 0.00 4.01
9 10 1.005569 GGCAGGTTTACTTAGGGGCTT 59.994 52.381 0.00 0.00 0.00 4.35
10 11 0.624254 GGCAGGTTTACTTAGGGGCT 59.376 55.000 0.00 0.00 0.00 5.19
11 12 0.395311 GGGCAGGTTTACTTAGGGGC 60.395 60.000 0.00 0.00 0.00 5.80
12 13 0.107361 CGGGCAGGTTTACTTAGGGG 60.107 60.000 0.00 0.00 0.00 4.79
13 14 0.107361 CCGGGCAGGTTTACTTAGGG 60.107 60.000 0.00 0.00 34.51 3.53
14 15 3.471354 CCGGGCAGGTTTACTTAGG 57.529 57.895 0.00 0.00 34.51 2.69
47 48 1.883084 CGACCGGGCAGACTTATGC 60.883 63.158 8.76 0.00 45.74 3.14
48 49 0.742505 TACGACCGGGCAGACTTATG 59.257 55.000 8.76 0.00 0.00 1.90
49 50 1.135721 GTTACGACCGGGCAGACTTAT 59.864 52.381 8.76 0.00 0.00 1.73
50 51 0.527565 GTTACGACCGGGCAGACTTA 59.472 55.000 8.76 0.00 0.00 2.24
51 52 1.291272 GTTACGACCGGGCAGACTT 59.709 57.895 8.76 0.00 0.00 3.01
52 53 1.904865 TGTTACGACCGGGCAGACT 60.905 57.895 8.76 0.00 0.00 3.24
53 54 1.735559 GTGTTACGACCGGGCAGAC 60.736 63.158 8.76 2.33 0.00 3.51
54 55 2.652530 GTGTTACGACCGGGCAGA 59.347 61.111 8.76 0.00 0.00 4.26
55 56 2.433664 GGTGTTACGACCGGGCAG 60.434 66.667 8.76 2.04 0.00 4.85
56 57 2.585341 ATGGTGTTACGACCGGGCA 61.585 57.895 8.76 0.00 39.07 5.36
57 58 2.104253 CATGGTGTTACGACCGGGC 61.104 63.158 6.32 0.00 39.07 6.13
58 59 0.738412 GACATGGTGTTACGACCGGG 60.738 60.000 6.32 0.00 39.07 5.73
59 60 0.245539 AGACATGGTGTTACGACCGG 59.754 55.000 0.00 0.00 39.07 5.28
60 61 2.421073 TCTAGACATGGTGTTACGACCG 59.579 50.000 0.00 0.00 39.07 4.79
61 62 4.082354 AGTTCTAGACATGGTGTTACGACC 60.082 45.833 0.00 0.00 36.43 4.79
62 63 5.056894 AGTTCTAGACATGGTGTTACGAC 57.943 43.478 0.00 0.00 0.00 4.34
63 64 5.242171 TGAAGTTCTAGACATGGTGTTACGA 59.758 40.000 4.17 0.00 0.00 3.43
64 65 5.466819 TGAAGTTCTAGACATGGTGTTACG 58.533 41.667 4.17 0.00 0.00 3.18
65 66 6.929606 AGTTGAAGTTCTAGACATGGTGTTAC 59.070 38.462 4.17 0.00 0.00 2.50
66 67 7.062749 AGTTGAAGTTCTAGACATGGTGTTA 57.937 36.000 4.17 0.00 0.00 2.41
67 68 5.930135 AGTTGAAGTTCTAGACATGGTGTT 58.070 37.500 4.17 0.00 0.00 3.32
68 69 5.552870 AGTTGAAGTTCTAGACATGGTGT 57.447 39.130 4.17 0.00 0.00 4.16
69 70 5.180117 CCAAGTTGAAGTTCTAGACATGGTG 59.820 44.000 3.87 6.07 0.00 4.17
70 71 5.071788 TCCAAGTTGAAGTTCTAGACATGGT 59.928 40.000 18.97 0.00 0.00 3.55
104 105 5.709164 AGATGGTCAGGTCTCTTTTGATTTG 59.291 40.000 0.00 0.00 0.00 2.32
106 107 5.013495 TCAGATGGTCAGGTCTCTTTTGATT 59.987 40.000 0.00 0.00 0.00 2.57
163 164 4.344104 CAAGGCCCCGGATGATTATTATT 58.656 43.478 0.73 0.00 0.00 1.40
249 250 3.370846 CCATTCTCTGCCCAGTTACATGA 60.371 47.826 0.00 0.00 0.00 3.07
342 1405 6.101332 TGCAGCAATGGAAATGTTATTCTTC 58.899 36.000 0.00 0.00 0.00 2.87
601 1697 0.607489 CCAGAGCCTGTTCTTGGGTG 60.607 60.000 0.00 0.00 35.20 4.61
652 1756 6.070656 TGACTCATTTTGGTCATCCTTCTTT 58.929 36.000 0.00 0.00 37.52 2.52
743 1849 0.810426 GCCGGCCTTACTTAGCACTC 60.810 60.000 18.11 0.00 0.00 3.51
780 1905 1.860078 CACCGGAGAAAACGACTGC 59.140 57.895 9.46 0.00 0.00 4.40
812 1937 0.679321 CAGAAAGCAGAAGAGGGGGC 60.679 60.000 0.00 0.00 0.00 5.80
842 1969 1.202758 TCAAAGTGATGCCAACCGAGT 60.203 47.619 0.00 0.00 0.00 4.18
843 1970 1.522668 TCAAAGTGATGCCAACCGAG 58.477 50.000 0.00 0.00 0.00 4.63
845 1972 1.666888 GCTTCAAAGTGATGCCAACCG 60.667 52.381 5.12 0.00 40.42 4.44
929 2099 1.415374 CGCTGTACTTGTTACGCTGT 58.585 50.000 0.00 0.00 32.71 4.40
934 2104 2.597305 CGATCACCGCTGTACTTGTTAC 59.403 50.000 0.00 0.00 0.00 2.50
982 2152 0.530211 ATTGCTCGCTGCTGCTCTAG 60.530 55.000 14.03 9.13 43.37 2.43
1011 2184 4.771356 ATGGTCGACGACGCCACG 62.771 66.667 20.92 0.00 43.73 4.94
1254 2473 2.034685 GCTCACTGCTCGGACATGTATA 59.965 50.000 0.00 0.00 38.95 1.47
1271 2490 1.637338 ACACAGACCTCATCAGCTCA 58.363 50.000 0.00 0.00 0.00 4.26
1450 2670 0.037605 GAGACCGATGACCCGTTTGT 60.038 55.000 0.00 0.00 0.00 2.83
1454 2674 0.611062 TCTTGAGACCGATGACCCGT 60.611 55.000 0.00 0.00 0.00 5.28
1508 2728 2.738521 CAGTCCGTCTTGGTGCCG 60.739 66.667 0.00 0.00 39.52 5.69
1568 2794 4.250170 ACCGTGTCCTCCTGGGGT 62.250 66.667 0.00 0.00 35.33 4.95
1643 2869 1.685517 TGCTTCATCTCCTCCATCTCG 59.314 52.381 0.00 0.00 0.00 4.04
1730 2962 2.301577 GCGACAGATAGAAGTTGCCT 57.698 50.000 0.00 0.00 38.85 4.75
1734 2966 1.134560 GGACGGCGACAGATAGAAGTT 59.865 52.381 16.62 0.00 0.00 2.66
1783 3015 1.641552 CGAGGAGGAGGAGGAGGAGT 61.642 65.000 0.00 0.00 0.00 3.85
1841 3088 1.952839 GCTTCCTTCTTGGCTTCCCTC 60.953 57.143 0.00 0.00 35.26 4.30
1957 3204 3.164269 CCGGTAGCTGGAGGCCAT 61.164 66.667 5.01 0.00 43.05 4.40
1976 3223 1.153369 CGTCATCCCATGGTTCGCT 60.153 57.895 11.73 0.00 0.00 4.93
1992 3239 1.672356 GCAGGCTGGACATGTTCGT 60.672 57.895 17.64 0.00 0.00 3.85
2073 3320 2.737376 GTCGAACACTCCGTGGCC 60.737 66.667 0.00 0.00 37.94 5.36
2217 3471 2.428890 GCTAAGCCTCTACTCTGCTTCA 59.571 50.000 0.00 0.00 43.80 3.02
2231 3485 5.393962 CACAACTGAATTTACAGCTAAGCC 58.606 41.667 0.00 0.00 41.06 4.35
2233 3487 6.246420 AGCACAACTGAATTTACAGCTAAG 57.754 37.500 0.00 0.00 41.06 2.18
2234 3488 6.039270 ACAAGCACAACTGAATTTACAGCTAA 59.961 34.615 0.00 0.00 41.06 3.09
2256 3511 5.006068 CGTAGACTCGTAGTACTATGCACAA 59.994 44.000 16.06 0.00 0.00 3.33
2257 3512 4.505556 CGTAGACTCGTAGTACTATGCACA 59.494 45.833 16.06 0.23 0.00 4.57
2258 3513 4.742167 TCGTAGACTCGTAGTACTATGCAC 59.258 45.833 16.06 9.98 0.00 4.57
2259 3514 4.936891 TCGTAGACTCGTAGTACTATGCA 58.063 43.478 16.06 0.00 0.00 3.96
2275 6190 4.934001 ACAAAGAGACGTCTATGTCGTAGA 59.066 41.667 20.09 0.00 43.70 2.59
2279 6194 6.361481 TGTTAAACAAAGAGACGTCTATGTCG 59.639 38.462 20.09 9.96 43.70 4.35
2280 6195 7.633361 TGTTAAACAAAGAGACGTCTATGTC 57.367 36.000 20.09 6.21 39.21 3.06
2319 6234 7.283127 TCCATAAGTTAATTCATTGCAGTCCTC 59.717 37.037 0.00 0.00 0.00 3.71
2321 6236 7.333528 TCCATAAGTTAATTCATTGCAGTCC 57.666 36.000 0.00 0.00 0.00 3.85
2323 6238 8.246180 CAGTTCCATAAGTTAATTCATTGCAGT 58.754 33.333 0.00 0.00 0.00 4.40
2528 6488 1.561769 ATCCAACGGATGTGGAGCCA 61.562 55.000 0.00 0.00 41.43 4.75
2551 6511 4.695396 GCTCTCATCTGTCTGATCAACAT 58.305 43.478 10.00 0.00 32.05 2.71
2620 6589 5.344665 CGTTATCCAATTGCACGAATGTTTT 59.655 36.000 0.00 0.00 32.51 2.43
2751 6720 6.493166 TGAATTCTAAATCCCATTGTCCTGT 58.507 36.000 7.05 0.00 0.00 4.00
2838 6807 1.271597 ACAAATCCCACTGTCCTGCTC 60.272 52.381 0.00 0.00 0.00 4.26
2937 6906 4.948004 TCCTGAAACTACTTCGAGCAGATA 59.052 41.667 0.00 0.00 36.78 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.