Multiple sequence alignment - TraesCS4B01G328000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G328000 chr4B 100.000 2549 0 0 1 2549 618648938 618646390 0.000000e+00 4708
1 TraesCS4B01G328000 chr4B 87.310 394 38 10 61 447 180991209 180990821 8.370000e-120 440
2 TraesCS4B01G328000 chr4B 94.241 191 7 4 1 188 180991018 180991207 3.210000e-74 289
3 TraesCS4B01G328000 chr4D 90.535 1141 78 11 672 1786 485481875 485480739 0.000000e+00 1482
4 TraesCS4B01G328000 chr4D 90.521 422 29 8 2136 2549 485480736 485480318 4.790000e-152 547
5 TraesCS4B01G328000 chr4D 75.586 512 89 25 672 1159 485479809 485479310 1.190000e-53 220
6 TraesCS4B01G328000 chr4D 89.349 169 14 4 1835 2002 187544813 187544978 2.570000e-50 209
7 TraesCS4B01G328000 chr4D 83.500 200 22 8 826 1017 485485185 485484989 2.610000e-40 176
8 TraesCS4B01G328000 chr3D 85.205 561 45 19 147 674 54326296 54326851 2.230000e-150 542
9 TraesCS4B01G328000 chr3D 87.811 402 31 15 147 545 586601025 586600639 2.990000e-124 455
10 TraesCS4B01G328000 chr3D 94.444 144 4 4 1 141 135539318 135539460 4.270000e-53 219
11 TraesCS4B01G328000 chr3D 90.141 142 11 3 6 145 135539649 135539509 5.600000e-42 182
12 TraesCS4B01G328000 chr7B 90.843 415 21 6 147 545 323845129 323844716 8.020000e-150 540
13 TraesCS4B01G328000 chr7B 91.667 144 12 0 1992 2135 742936720 742936577 1.550000e-47 200
14 TraesCS4B01G328000 chr6B 88.121 463 29 10 149 587 451934997 451934537 6.250000e-146 527
15 TraesCS4B01G328000 chr6B 89.387 424 22 9 140 545 697044806 697044388 1.750000e-141 512
16 TraesCS4B01G328000 chr6B 88.945 398 23 6 147 525 697275832 697275437 2.970000e-129 472
17 TraesCS4B01G328000 chr6B 92.386 197 11 4 1 194 697276080 697275885 6.950000e-71 278
18 TraesCS4B01G328000 chr6B 90.667 150 14 0 1986 2135 128890739 128890888 1.550000e-47 200
19 TraesCS4B01G328000 chr6B 85.135 148 20 2 1 147 697275730 697275876 1.580000e-32 150
20 TraesCS4B01G328000 chr5B 89.855 414 19 6 149 545 116672078 116672485 6.290000e-141 510
21 TraesCS4B01G328000 chr5B 90.667 150 14 0 1986 2135 127819750 127819899 1.550000e-47 200
22 TraesCS4B01G328000 chr5B 91.667 144 12 0 1992 2135 713095003 713094860 1.550000e-47 200
23 TraesCS4B01G328000 chr5B 90.667 150 14 0 1986 2135 713113718 713113867 1.550000e-47 200
24 TraesCS4B01G328000 chr5B 89.610 154 14 2 1840 1992 372828123 372827971 7.200000e-46 195
25 TraesCS4B01G328000 chr2B 88.665 397 22 8 147 522 120570143 120569749 1.790000e-126 462
26 TraesCS4B01G328000 chr2B 85.787 197 17 9 8 197 18161855 18162047 5.560000e-47 198
27 TraesCS4B01G328000 chr5D 93.811 307 14 4 143 447 396917532 396917835 8.310000e-125 457
28 TraesCS4B01G328000 chr2D 92.453 159 10 2 1835 1992 44928832 44928989 2.550000e-55 226
29 TraesCS4B01G328000 chr2D 90.964 166 13 2 1835 1999 323115377 323115213 3.300000e-54 222
30 TraesCS4B01G328000 chr2D 88.608 158 18 0 1835 1992 456507605 456507762 2.590000e-45 193
31 TraesCS4B01G328000 chrUn 92.405 158 11 1 1835 1992 356523112 356523268 9.180000e-55 224
32 TraesCS4B01G328000 chrUn 86.747 166 20 2 1835 1999 96648894 96648730 1.560000e-42 183
33 TraesCS4B01G328000 chr3B 92.405 158 11 1 1835 1992 5669696 5669852 9.180000e-55 224
34 TraesCS4B01G328000 chr3B 94.444 144 8 0 1992 2135 7308581 7308438 3.300000e-54 222
35 TraesCS4B01G328000 chr3A 93.151 146 7 3 1 144 629924833 629924689 7.140000e-51 211
36 TraesCS4B01G328000 chr7A 90.667 150 14 0 1986 2135 60096954 60097103 1.550000e-47 200
37 TraesCS4B01G328000 chr1B 91.667 144 12 0 1992 2135 517084669 517084526 1.550000e-47 200
38 TraesCS4B01G328000 chr1B 91.667 144 12 0 1992 2135 583549548 583549405 1.550000e-47 200
39 TraesCS4B01G328000 chr1B 86.620 142 16 3 8 147 640869150 640869010 1.220000e-33 154
40 TraesCS4B01G328000 chr7D 87.654 162 19 1 1835 1996 105422865 105422705 1.200000e-43 187
41 TraesCS4B01G328000 chr7D 90.299 134 10 3 14 145 460644040 460643908 3.370000e-39 172


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G328000 chr4B 618646390 618648938 2548 True 4708.00 4708 100.0000 1 2549 1 chr4B.!!$R2 2548
1 TraesCS4B01G328000 chr4D 485479310 485485185 5875 True 606.25 1482 85.0355 672 2549 4 chr4D.!!$R1 1877
2 TraesCS4B01G328000 chr3D 54326296 54326851 555 False 542.00 542 85.2050 147 674 1 chr3D.!!$F1 527
3 TraesCS4B01G328000 chr6B 697275437 697276080 643 True 375.00 472 90.6655 1 525 2 chr6B.!!$R3 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
548 678 0.734889 CAAGCCAATTAGTCCCTGCG 59.265 55.0 0.0 0.0 0.0 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2000 4664 0.035152 TGATCTGAATGCGGGCAACT 60.035 50.0 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
453 571 5.501156 ACAACTAAAACCAAAAATGGCCAA 58.499 33.333 10.96 0.00 0.00 4.52
472 590 1.635817 AATGCACCTAGTCGGCCCAT 61.636 55.000 0.00 0.00 35.61 4.00
499 617 2.044946 ATTGGCTTCCAGTCGGCC 60.045 61.111 0.00 0.00 45.45 6.13
500 618 2.543067 GATTGGCTTCCAGTCGGCCT 62.543 60.000 0.00 0.00 45.45 5.19
544 666 1.106285 CCAGCAAGCCAATTAGTCCC 58.894 55.000 0.00 0.00 0.00 4.46
548 678 0.734889 CAAGCCAATTAGTCCCTGCG 59.265 55.000 0.00 0.00 0.00 5.18
692 3332 3.181503 CCACATGTTTGCTCTATCACAGC 60.182 47.826 0.00 0.00 37.40 4.40
724 3365 2.632987 AGTCCGTTGTTGGTTTAGCT 57.367 45.000 0.00 0.00 0.00 3.32
728 3369 3.185797 GTCCGTTGTTGGTTTAGCTACAG 59.814 47.826 0.00 0.00 0.00 2.74
731 3372 4.056050 CGTTGTTGGTTTAGCTACAGTCT 58.944 43.478 0.00 0.00 0.00 3.24
747 3388 3.056821 ACAGTCTCACGCATAAACTAGCA 60.057 43.478 0.00 0.00 0.00 3.49
758 3399 6.093495 ACGCATAAACTAGCAAGCTTAATTGA 59.907 34.615 0.00 0.00 31.55 2.57
770 3411 5.990120 AGCTTAATTGATGCTCCACTTTT 57.010 34.783 0.00 0.00 33.35 2.27
788 3429 8.644216 TCCACTTTTAAGTACTGATGACAACTA 58.356 33.333 0.00 0.00 37.08 2.24
794 3435 9.692749 TTTAAGTACTGATGACAACTAGACAAG 57.307 33.333 0.00 0.00 0.00 3.16
840 3491 2.338257 GCAGGCTCTAGCGGCTAG 59.662 66.667 27.23 27.23 43.26 3.42
842 3493 1.529478 CAGGCTCTAGCGGCTAGGA 60.529 63.158 30.82 18.85 43.26 2.94
852 3503 1.036707 GCGGCTAGGAATCTCTCACT 58.963 55.000 0.00 0.00 0.00 3.41
857 3508 3.639094 GGCTAGGAATCTCTCACTGCTTA 59.361 47.826 0.00 0.00 0.00 3.09
859 3510 4.098654 GCTAGGAATCTCTCACTGCTTACA 59.901 45.833 0.00 0.00 0.00 2.41
893 3545 1.473258 TGCATTCCCCTCCAAATTCG 58.527 50.000 0.00 0.00 0.00 3.34
908 3560 7.094118 CCTCCAAATTCGGTTCCAACTAATTAA 60.094 37.037 0.00 0.00 30.19 1.40
924 3576 9.922305 CAACTAATTAATTAAGTGCACTCTAGC 57.078 33.333 21.95 0.00 0.00 3.42
928 3580 8.970859 AATTAATTAAGTGCACTCTAGCTCAT 57.029 30.769 21.95 4.01 34.99 2.90
932 3584 6.715347 TTAAGTGCACTCTAGCTCATCATA 57.285 37.500 21.95 0.69 34.99 2.15
933 3585 5.604758 AAGTGCACTCTAGCTCATCATAA 57.395 39.130 21.95 0.00 34.99 1.90
936 3588 5.303845 AGTGCACTCTAGCTCATCATAATCA 59.696 40.000 15.25 0.00 34.99 2.57
938 3590 6.310956 GTGCACTCTAGCTCATCATAATCATC 59.689 42.308 10.32 0.00 34.99 2.92
941 3593 8.196103 GCACTCTAGCTCATCATAATCATCATA 58.804 37.037 0.00 0.00 0.00 2.15
974 3626 8.122472 ACAAATTTAGTTAATTGCTACCAGCT 57.878 30.769 0.00 0.00 42.97 4.24
979 3631 3.054802 AGTTAATTGCTACCAGCTCTGCT 60.055 43.478 0.00 0.00 42.97 4.24
987 3639 4.195416 GCTACCAGCTCTGCTTTTCTTAT 58.805 43.478 0.00 0.00 36.40 1.73
988 3640 5.104941 TGCTACCAGCTCTGCTTTTCTTATA 60.105 40.000 0.00 0.00 42.97 0.98
989 3641 5.235401 GCTACCAGCTCTGCTTTTCTTATAC 59.765 44.000 0.00 0.00 36.40 1.47
990 3642 4.518249 ACCAGCTCTGCTTTTCTTATACC 58.482 43.478 0.00 0.00 36.40 2.73
995 3647 6.597280 CAGCTCTGCTTTTCTTATACCTTTCT 59.403 38.462 0.00 0.00 36.40 2.52
996 3648 7.766278 CAGCTCTGCTTTTCTTATACCTTTCTA 59.234 37.037 0.00 0.00 36.40 2.10
999 3651 8.375493 TCTGCTTTTCTTATACCTTTCTAGGA 57.625 34.615 0.00 0.00 45.05 2.94
1028 3680 1.225855 CATGCAAGTGTGGTACGTGT 58.774 50.000 0.00 0.00 40.36 4.49
1045 3697 0.251916 TGTAGCATACACCCACCAGC 59.748 55.000 0.00 0.00 46.14 4.85
1052 3704 4.624364 CACCCACCAGCGCAGTGA 62.624 66.667 26.51 0.00 37.42 3.41
1053 3705 4.626081 ACCCACCAGCGCAGTGAC 62.626 66.667 26.51 0.00 37.42 3.67
1056 3709 2.186160 CCACCAGCGCAGTGACAAA 61.186 57.895 26.51 0.00 37.42 2.83
1058 3711 0.592247 CACCAGCGCAGTGACAAAAC 60.592 55.000 22.02 0.00 37.42 2.43
1062 3715 1.583404 CAGCGCAGTGACAAAACAAAC 59.417 47.619 11.47 0.00 0.00 2.93
1064 3717 1.469079 GCGCAGTGACAAAACAAACCT 60.469 47.619 0.30 0.00 0.00 3.50
1066 3719 3.550030 GCGCAGTGACAAAACAAACCTAT 60.550 43.478 0.30 0.00 0.00 2.57
1078 3731 5.934935 AACAAACCTATACCAACGAACTG 57.065 39.130 0.00 0.00 0.00 3.16
1084 3737 0.035439 ATACCAACGAACTGGGCCTG 60.035 55.000 9.11 9.11 41.16 4.85
1085 3738 1.412453 TACCAACGAACTGGGCCTGT 61.412 55.000 10.65 10.65 41.16 4.00
1086 3739 1.966451 CCAACGAACTGGGCCTGTC 60.966 63.158 16.96 9.30 32.32 3.51
1087 3740 1.227823 CAACGAACTGGGCCTGTCA 60.228 57.895 16.96 0.00 0.00 3.58
1088 3741 0.817634 CAACGAACTGGGCCTGTCAA 60.818 55.000 16.96 0.00 0.00 3.18
1089 3742 0.106918 AACGAACTGGGCCTGTCAAA 60.107 50.000 16.96 0.00 0.00 2.69
1091 3744 0.310854 CGAACTGGGCCTGTCAAAAC 59.689 55.000 16.96 5.74 0.00 2.43
1115 3768 0.606401 ATGGCGTCCAAGTCCAACTG 60.606 55.000 2.68 0.00 36.95 3.16
1117 3770 2.954753 GCGTCCAAGTCCAACTGCG 61.955 63.158 0.00 0.00 0.00 5.18
1118 3771 1.594293 CGTCCAAGTCCAACTGCGT 60.594 57.895 0.00 0.00 0.00 5.24
1128 3781 1.151668 CCAACTGCGTTCTCCTCTTG 58.848 55.000 0.00 0.00 0.00 3.02
1131 3784 1.743252 CTGCGTTCTCCTCTTGGCC 60.743 63.158 0.00 0.00 0.00 5.36
1135 3788 4.082523 TTCTCCTCTTGGCCGCCG 62.083 66.667 4.58 0.00 0.00 6.46
1145 3798 3.902086 GGCCGCCGTCCTAGTCTC 61.902 72.222 0.00 0.00 0.00 3.36
1196 3849 1.288633 TGAAGATTGCACCCCATGGAT 59.711 47.619 15.22 0.00 34.81 3.41
1231 3884 3.052082 CACTCCCAAGCTGCCGTG 61.052 66.667 0.00 0.00 0.00 4.94
1243 3896 1.359848 CTGCCGTGACTATGTGGAAC 58.640 55.000 0.00 0.00 37.35 3.62
1257 3910 0.310543 TGGAACAACAAGCATGTCGC 59.689 50.000 0.00 0.00 39.40 5.19
1265 3918 1.135972 ACAAGCATGTCGCATCGAAAC 60.136 47.619 0.00 0.00 46.13 2.78
1294 3947 3.188786 CGTACCTCGCCAAGCAGC 61.189 66.667 0.00 0.00 0.00 5.25
1374 4027 2.683933 ATGGGGCCGAAGTCTCGT 60.684 61.111 0.00 0.00 43.87 4.18
1429 4082 1.414061 CCCTAGGGAGGTGCAGATGG 61.414 65.000 24.99 0.00 41.95 3.51
1437 4090 0.036952 AGGTGCAGATGGACTTCGTG 60.037 55.000 4.44 0.00 36.56 4.35
1438 4091 0.037326 GGTGCAGATGGACTTCGTGA 60.037 55.000 4.44 0.00 36.56 4.35
1439 4092 1.354040 GTGCAGATGGACTTCGTGAG 58.646 55.000 0.00 0.00 33.32 3.51
1440 4093 0.247460 TGCAGATGGACTTCGTGAGG 59.753 55.000 0.00 0.00 0.00 3.86
1488 4141 0.173935 TGACGACCGTTCACAACACT 59.826 50.000 0.00 0.00 0.00 3.55
1491 4144 1.545614 CGACCGTTCACAACACTCCG 61.546 60.000 0.00 0.00 0.00 4.63
1502 4155 2.202623 CACTCCGTACTGCCTCGC 60.203 66.667 0.00 0.00 0.00 5.03
1636 4289 2.289820 GCTCATCATGTGTGGTGCTATG 59.710 50.000 0.00 0.00 36.37 2.23
1642 4295 2.093306 TGTGTGGTGCTATGTGCTAC 57.907 50.000 0.00 0.00 43.37 3.58
1696 4352 5.784177 TCGCTTCTTAAACTCAACTCAGAT 58.216 37.500 0.00 0.00 0.00 2.90
1720 4376 7.214467 TCTTTAATTCATGTCTTTGGTGGTC 57.786 36.000 0.00 0.00 0.00 4.02
1732 4388 7.375053 TGTCTTTGGTGGTCAAAATTATTAGC 58.625 34.615 0.00 0.00 43.88 3.09
1739 4395 8.592809 TGGTGGTCAAAATTATTAGCAAAATCT 58.407 29.630 0.00 0.00 0.00 2.40
1740 4396 9.087424 GGTGGTCAAAATTATTAGCAAAATCTC 57.913 33.333 0.00 0.00 0.00 2.75
1741 4397 9.087424 GTGGTCAAAATTATTAGCAAAATCTCC 57.913 33.333 0.00 0.00 0.00 3.71
1776 4440 5.783111 ACATTTCTACATTTTTGTCCAGCC 58.217 37.500 0.00 0.00 0.00 4.85
1786 4450 6.710295 ACATTTTTGTCCAGCCTTTTATTTCC 59.290 34.615 0.00 0.00 0.00 3.13
1787 4451 5.878406 TTTTGTCCAGCCTTTTATTTCCA 57.122 34.783 0.00 0.00 0.00 3.53
1788 4452 5.467035 TTTGTCCAGCCTTTTATTTCCAG 57.533 39.130 0.00 0.00 0.00 3.86
1789 4453 4.112634 TGTCCAGCCTTTTATTTCCAGT 57.887 40.909 0.00 0.00 0.00 4.00
1790 4454 3.826157 TGTCCAGCCTTTTATTTCCAGTG 59.174 43.478 0.00 0.00 0.00 3.66
1791 4455 4.079253 GTCCAGCCTTTTATTTCCAGTGA 58.921 43.478 0.00 0.00 0.00 3.41
1792 4456 4.156739 GTCCAGCCTTTTATTTCCAGTGAG 59.843 45.833 0.00 0.00 0.00 3.51
1793 4457 3.119352 CCAGCCTTTTATTTCCAGTGAGC 60.119 47.826 0.00 0.00 0.00 4.26
1794 4458 3.507233 CAGCCTTTTATTTCCAGTGAGCA 59.493 43.478 0.00 0.00 0.00 4.26
1795 4459 3.760684 AGCCTTTTATTTCCAGTGAGCAG 59.239 43.478 0.00 0.00 0.00 4.24
1796 4460 3.674410 GCCTTTTATTTCCAGTGAGCAGC 60.674 47.826 0.00 0.00 0.00 5.25
1797 4461 3.507233 CCTTTTATTTCCAGTGAGCAGCA 59.493 43.478 0.00 0.00 0.00 4.41
1798 4462 4.159135 CCTTTTATTTCCAGTGAGCAGCAT 59.841 41.667 0.00 0.00 0.00 3.79
1799 4463 5.357878 CCTTTTATTTCCAGTGAGCAGCATA 59.642 40.000 0.00 0.00 0.00 3.14
1800 4464 6.040166 CCTTTTATTTCCAGTGAGCAGCATAT 59.960 38.462 0.00 0.00 0.00 1.78
1801 4465 7.229306 CCTTTTATTTCCAGTGAGCAGCATATA 59.771 37.037 0.00 0.00 0.00 0.86
1802 4466 7.496529 TTTATTTCCAGTGAGCAGCATATAC 57.503 36.000 0.00 0.00 0.00 1.47
1803 4467 4.486125 TTTCCAGTGAGCAGCATATACA 57.514 40.909 0.00 0.00 0.00 2.29
1804 4468 4.486125 TTCCAGTGAGCAGCATATACAA 57.514 40.909 0.00 0.00 0.00 2.41
1805 4469 4.063998 TCCAGTGAGCAGCATATACAAG 57.936 45.455 0.00 0.00 0.00 3.16
1806 4470 3.136763 CCAGTGAGCAGCATATACAAGG 58.863 50.000 0.00 0.00 0.00 3.61
1807 4471 2.547211 CAGTGAGCAGCATATACAAGGC 59.453 50.000 0.00 0.00 0.00 4.35
1808 4472 2.437281 AGTGAGCAGCATATACAAGGCT 59.563 45.455 0.00 0.00 38.70 4.58
1809 4473 3.643320 AGTGAGCAGCATATACAAGGCTA 59.357 43.478 0.00 0.00 35.82 3.93
1810 4474 4.285517 AGTGAGCAGCATATACAAGGCTAT 59.714 41.667 0.00 0.00 35.82 2.97
1811 4475 5.481824 AGTGAGCAGCATATACAAGGCTATA 59.518 40.000 0.00 0.00 35.82 1.31
1812 4476 6.155910 AGTGAGCAGCATATACAAGGCTATAT 59.844 38.462 0.00 0.00 35.82 0.86
1813 4477 6.820656 GTGAGCAGCATATACAAGGCTATATT 59.179 38.462 0.00 0.00 35.82 1.28
1814 4478 7.335422 GTGAGCAGCATATACAAGGCTATATTT 59.665 37.037 0.00 0.00 35.82 1.40
1815 4479 7.335171 TGAGCAGCATATACAAGGCTATATTTG 59.665 37.037 0.00 0.00 35.82 2.32
1816 4480 7.170965 AGCAGCATATACAAGGCTATATTTGT 58.829 34.615 0.00 0.00 40.39 2.83
1817 4481 8.321353 AGCAGCATATACAAGGCTATATTTGTA 58.679 33.333 0.00 0.00 42.16 2.41
1818 4482 8.946085 GCAGCATATACAAGGCTATATTTGTAA 58.054 33.333 0.51 0.00 41.52 2.41
1853 4517 3.628989 CCATGTACTGGCGAGGGA 58.371 61.111 0.00 0.00 38.47 4.20
1854 4518 1.443407 CCATGTACTGGCGAGGGAG 59.557 63.158 0.00 0.00 38.47 4.30
1855 4519 1.227380 CATGTACTGGCGAGGGAGC 60.227 63.158 0.00 0.00 0.00 4.70
1863 4527 3.221222 GCGAGGGAGCCATGTACT 58.779 61.111 0.00 0.00 0.00 2.73
1864 4528 1.522569 GCGAGGGAGCCATGTACTT 59.477 57.895 0.00 0.00 0.00 2.24
1865 4529 0.811616 GCGAGGGAGCCATGTACTTG 60.812 60.000 1.78 1.78 0.00 3.16
1866 4530 0.824109 CGAGGGAGCCATGTACTTGA 59.176 55.000 10.20 0.00 0.00 3.02
1867 4531 1.471676 CGAGGGAGCCATGTACTTGAC 60.472 57.143 10.20 0.00 0.00 3.18
1868 4532 1.834263 GAGGGAGCCATGTACTTGACT 59.166 52.381 10.20 3.78 0.00 3.41
1869 4533 2.237392 GAGGGAGCCATGTACTTGACTT 59.763 50.000 10.20 0.00 0.00 3.01
1870 4534 2.644798 AGGGAGCCATGTACTTGACTTT 59.355 45.455 10.20 0.00 0.00 2.66
1871 4535 3.074538 AGGGAGCCATGTACTTGACTTTT 59.925 43.478 10.20 0.00 0.00 2.27
1872 4536 3.826729 GGGAGCCATGTACTTGACTTTTT 59.173 43.478 10.20 0.00 0.00 1.94
1873 4537 4.082733 GGGAGCCATGTACTTGACTTTTTC 60.083 45.833 10.20 0.00 0.00 2.29
1874 4538 4.762251 GGAGCCATGTACTTGACTTTTTCT 59.238 41.667 10.20 0.00 0.00 2.52
1875 4539 5.241728 GGAGCCATGTACTTGACTTTTTCTT 59.758 40.000 10.20 0.00 0.00 2.52
1876 4540 6.239036 GGAGCCATGTACTTGACTTTTTCTTT 60.239 38.462 10.20 0.00 0.00 2.52
1877 4541 7.112452 AGCCATGTACTTGACTTTTTCTTTT 57.888 32.000 10.20 0.00 0.00 2.27
1878 4542 6.980397 AGCCATGTACTTGACTTTTTCTTTTG 59.020 34.615 10.20 0.00 0.00 2.44
1879 4543 6.756542 GCCATGTACTTGACTTTTTCTTTTGT 59.243 34.615 10.20 0.00 0.00 2.83
1880 4544 7.043391 GCCATGTACTTGACTTTTTCTTTTGTC 60.043 37.037 10.20 0.00 0.00 3.18
1881 4545 7.165812 CCATGTACTTGACTTTTTCTTTTGTCG 59.834 37.037 10.20 0.00 32.64 4.35
1882 4546 7.136289 TGTACTTGACTTTTTCTTTTGTCGT 57.864 32.000 0.00 0.00 32.64 4.34
1883 4547 7.586747 TGTACTTGACTTTTTCTTTTGTCGTT 58.413 30.769 0.00 0.00 32.64 3.85
1884 4548 7.747357 TGTACTTGACTTTTTCTTTTGTCGTTC 59.253 33.333 0.00 0.00 32.64 3.95
1885 4549 6.909909 ACTTGACTTTTTCTTTTGTCGTTCT 58.090 32.000 0.00 0.00 32.64 3.01
1886 4550 6.801862 ACTTGACTTTTTCTTTTGTCGTTCTG 59.198 34.615 0.00 0.00 32.64 3.02
1887 4551 5.092781 TGACTTTTTCTTTTGTCGTTCTGC 58.907 37.500 0.00 0.00 32.64 4.26
1888 4552 4.421058 ACTTTTTCTTTTGTCGTTCTGCC 58.579 39.130 0.00 0.00 0.00 4.85
1889 4553 3.430333 TTTTCTTTTGTCGTTCTGCCC 57.570 42.857 0.00 0.00 0.00 5.36
1890 4554 0.941542 TTCTTTTGTCGTTCTGCCCG 59.058 50.000 0.00 0.00 0.00 6.13
1891 4555 0.179067 TCTTTTGTCGTTCTGCCCGT 60.179 50.000 0.00 0.00 0.00 5.28
1892 4556 0.234884 CTTTTGTCGTTCTGCCCGTC 59.765 55.000 0.00 0.00 0.00 4.79
1893 4557 0.462225 TTTTGTCGTTCTGCCCGTCA 60.462 50.000 0.00 0.00 0.00 4.35
1894 4558 0.250124 TTTGTCGTTCTGCCCGTCAT 60.250 50.000 0.00 0.00 0.00 3.06
1895 4559 0.250124 TTGTCGTTCTGCCCGTCATT 60.250 50.000 0.00 0.00 0.00 2.57
1896 4560 0.948623 TGTCGTTCTGCCCGTCATTG 60.949 55.000 0.00 0.00 0.00 2.82
1897 4561 1.375396 TCGTTCTGCCCGTCATTGG 60.375 57.895 0.00 0.00 0.00 3.16
1904 4568 2.755469 CCCGTCATTGGGGCTTGG 60.755 66.667 0.00 0.00 46.17 3.61
1905 4569 2.755469 CCGTCATTGGGGCTTGGG 60.755 66.667 0.00 0.00 0.00 4.12
1906 4570 2.755469 CGTCATTGGGGCTTGGGG 60.755 66.667 0.00 0.00 0.00 4.96
1907 4571 2.364186 GTCATTGGGGCTTGGGGG 60.364 66.667 0.00 0.00 0.00 5.40
1908 4572 2.868566 TCATTGGGGCTTGGGGGT 60.869 61.111 0.00 0.00 0.00 4.95
1909 4573 2.684655 CATTGGGGCTTGGGGGTG 60.685 66.667 0.00 0.00 0.00 4.61
1910 4574 3.200168 ATTGGGGCTTGGGGGTGT 61.200 61.111 0.00 0.00 0.00 4.16
1911 4575 2.800496 ATTGGGGCTTGGGGGTGTT 61.800 57.895 0.00 0.00 0.00 3.32
1912 4576 2.339462 ATTGGGGCTTGGGGGTGTTT 62.339 55.000 0.00 0.00 0.00 2.83
1913 4577 2.922503 GGGGCTTGGGGGTGTTTG 60.923 66.667 0.00 0.00 0.00 2.93
1914 4578 2.200092 GGGCTTGGGGGTGTTTGA 59.800 61.111 0.00 0.00 0.00 2.69
1915 4579 1.229177 GGGCTTGGGGGTGTTTGAT 60.229 57.895 0.00 0.00 0.00 2.57
1916 4580 0.040499 GGGCTTGGGGGTGTTTGATA 59.960 55.000 0.00 0.00 0.00 2.15
1917 4581 1.182667 GGCTTGGGGGTGTTTGATAC 58.817 55.000 0.00 0.00 0.00 2.24
1918 4582 1.272480 GGCTTGGGGGTGTTTGATACT 60.272 52.381 0.00 0.00 0.00 2.12
1919 4583 2.025699 GGCTTGGGGGTGTTTGATACTA 60.026 50.000 0.00 0.00 0.00 1.82
1920 4584 3.562609 GGCTTGGGGGTGTTTGATACTAA 60.563 47.826 0.00 0.00 0.00 2.24
1921 4585 4.278310 GCTTGGGGGTGTTTGATACTAAT 58.722 43.478 0.00 0.00 0.00 1.73
1922 4586 4.338400 GCTTGGGGGTGTTTGATACTAATC 59.662 45.833 0.00 0.00 0.00 1.75
1923 4587 5.755849 CTTGGGGGTGTTTGATACTAATCT 58.244 41.667 0.00 0.00 32.93 2.40
1924 4588 5.110814 TGGGGGTGTTTGATACTAATCTG 57.889 43.478 0.00 0.00 32.93 2.90
1925 4589 4.538490 TGGGGGTGTTTGATACTAATCTGT 59.462 41.667 0.00 0.00 32.93 3.41
1926 4590 4.881850 GGGGGTGTTTGATACTAATCTGTG 59.118 45.833 0.00 0.00 32.93 3.66
1927 4591 5.338871 GGGGGTGTTTGATACTAATCTGTGA 60.339 44.000 0.00 0.00 32.93 3.58
1928 4592 6.357367 GGGGTGTTTGATACTAATCTGTGAT 58.643 40.000 0.00 0.00 32.93 3.06
1929 4593 6.260936 GGGGTGTTTGATACTAATCTGTGATG 59.739 42.308 0.00 0.00 32.93 3.07
1930 4594 6.823689 GGGTGTTTGATACTAATCTGTGATGT 59.176 38.462 0.00 0.00 32.93 3.06
1931 4595 7.336931 GGGTGTTTGATACTAATCTGTGATGTT 59.663 37.037 0.00 0.00 32.93 2.71
1932 4596 8.177663 GGTGTTTGATACTAATCTGTGATGTTG 58.822 37.037 0.00 0.00 32.93 3.33
1933 4597 7.693951 GTGTTTGATACTAATCTGTGATGTTGC 59.306 37.037 0.00 0.00 32.93 4.17
1934 4598 7.607607 TGTTTGATACTAATCTGTGATGTTGCT 59.392 33.333 0.00 0.00 32.93 3.91
1935 4599 7.543947 TTGATACTAATCTGTGATGTTGCTG 57.456 36.000 0.00 0.00 32.93 4.41
1936 4600 5.525012 TGATACTAATCTGTGATGTTGCTGC 59.475 40.000 0.00 0.00 32.93 5.25
1937 4601 3.947868 ACTAATCTGTGATGTTGCTGCT 58.052 40.909 0.00 0.00 0.00 4.24
1938 4602 5.089970 ACTAATCTGTGATGTTGCTGCTA 57.910 39.130 0.00 0.00 0.00 3.49
1939 4603 4.872691 ACTAATCTGTGATGTTGCTGCTAC 59.127 41.667 7.29 7.29 0.00 3.58
1940 4604 2.099141 TCTGTGATGTTGCTGCTACC 57.901 50.000 11.51 0.00 0.00 3.18
1941 4605 1.625315 TCTGTGATGTTGCTGCTACCT 59.375 47.619 11.51 1.69 0.00 3.08
1942 4606 1.736126 CTGTGATGTTGCTGCTACCTG 59.264 52.381 11.51 0.00 0.00 4.00
1943 4607 0.449388 GTGATGTTGCTGCTACCTGC 59.551 55.000 11.51 2.18 43.25 4.85
1944 4608 0.677731 TGATGTTGCTGCTACCTGCC 60.678 55.000 11.51 0.00 42.00 4.85
1945 4609 0.393537 GATGTTGCTGCTACCTGCCT 60.394 55.000 11.51 0.00 42.00 4.75
1946 4610 0.038744 ATGTTGCTGCTACCTGCCTT 59.961 50.000 11.51 0.00 42.00 4.35
1947 4611 0.690192 TGTTGCTGCTACCTGCCTTA 59.310 50.000 11.51 0.00 42.00 2.69
1948 4612 1.281867 TGTTGCTGCTACCTGCCTTAT 59.718 47.619 11.51 0.00 42.00 1.73
1949 4613 1.672881 GTTGCTGCTACCTGCCTTATG 59.327 52.381 2.72 0.00 42.00 1.90
1950 4614 0.181114 TGCTGCTACCTGCCTTATGG 59.819 55.000 0.00 0.00 42.00 2.74
1972 4636 6.688637 GGCTTTATTTATAAAGTCGGGTGT 57.311 37.500 18.51 0.00 46.78 4.16
1973 4637 7.092137 GGCTTTATTTATAAAGTCGGGTGTT 57.908 36.000 18.51 0.00 46.78 3.32
1974 4638 7.541162 GGCTTTATTTATAAAGTCGGGTGTTT 58.459 34.615 18.51 0.00 46.78 2.83
1975 4639 7.486870 GGCTTTATTTATAAAGTCGGGTGTTTG 59.513 37.037 18.51 0.00 46.78 2.93
1976 4640 7.008901 GCTTTATTTATAAAGTCGGGTGTTTGC 59.991 37.037 18.51 2.98 46.78 3.68
1977 4641 4.769859 TTTATAAAGTCGGGTGTTTGCC 57.230 40.909 0.00 0.00 0.00 4.52
1978 4642 2.579410 ATAAAGTCGGGTGTTTGCCT 57.421 45.000 0.00 0.00 0.00 4.75
1979 4643 2.351706 TAAAGTCGGGTGTTTGCCTT 57.648 45.000 0.00 0.00 0.00 4.35
1980 4644 1.480789 AAAGTCGGGTGTTTGCCTTT 58.519 45.000 0.00 0.00 0.00 3.11
1981 4645 1.480789 AAGTCGGGTGTTTGCCTTTT 58.519 45.000 0.00 0.00 0.00 2.27
1982 4646 1.029681 AGTCGGGTGTTTGCCTTTTC 58.970 50.000 0.00 0.00 0.00 2.29
1983 4647 1.029681 GTCGGGTGTTTGCCTTTTCT 58.970 50.000 0.00 0.00 0.00 2.52
1984 4648 1.001706 GTCGGGTGTTTGCCTTTTCTC 60.002 52.381 0.00 0.00 0.00 2.87
1985 4649 1.133915 TCGGGTGTTTGCCTTTTCTCT 60.134 47.619 0.00 0.00 0.00 3.10
1986 4650 2.105134 TCGGGTGTTTGCCTTTTCTCTA 59.895 45.455 0.00 0.00 0.00 2.43
1987 4651 2.882137 CGGGTGTTTGCCTTTTCTCTAA 59.118 45.455 0.00 0.00 0.00 2.10
1988 4652 3.316868 CGGGTGTTTGCCTTTTCTCTAAA 59.683 43.478 0.00 0.00 0.00 1.85
1989 4653 4.202070 CGGGTGTTTGCCTTTTCTCTAAAA 60.202 41.667 0.00 0.00 33.58 1.52
1990 4654 5.666462 GGGTGTTTGCCTTTTCTCTAAAAA 58.334 37.500 0.00 0.00 34.26 1.94
2012 4676 8.956533 AAAAATAAATAATAGTTGCCCGCATT 57.043 26.923 0.00 0.00 0.00 3.56
2013 4677 8.587952 AAAATAAATAATAGTTGCCCGCATTC 57.412 30.769 0.00 0.00 0.00 2.67
2014 4678 6.892658 ATAAATAATAGTTGCCCGCATTCA 57.107 33.333 0.00 0.00 0.00 2.57
2015 4679 4.836125 AATAATAGTTGCCCGCATTCAG 57.164 40.909 0.00 0.00 0.00 3.02
2016 4680 2.418368 AATAGTTGCCCGCATTCAGA 57.582 45.000 0.00 0.00 0.00 3.27
2017 4681 2.645838 ATAGTTGCCCGCATTCAGAT 57.354 45.000 0.00 0.00 0.00 2.90
2018 4682 1.953559 TAGTTGCCCGCATTCAGATC 58.046 50.000 0.00 0.00 0.00 2.75
2019 4683 0.035152 AGTTGCCCGCATTCAGATCA 60.035 50.000 0.00 0.00 0.00 2.92
2020 4684 0.810648 GTTGCCCGCATTCAGATCAA 59.189 50.000 0.00 0.00 0.00 2.57
2021 4685 1.406539 GTTGCCCGCATTCAGATCAAT 59.593 47.619 0.00 0.00 0.00 2.57
2022 4686 1.766494 TGCCCGCATTCAGATCAATT 58.234 45.000 0.00 0.00 0.00 2.32
2023 4687 2.929641 TGCCCGCATTCAGATCAATTA 58.070 42.857 0.00 0.00 0.00 1.40
2024 4688 3.489355 TGCCCGCATTCAGATCAATTAT 58.511 40.909 0.00 0.00 0.00 1.28
2025 4689 3.890756 TGCCCGCATTCAGATCAATTATT 59.109 39.130 0.00 0.00 0.00 1.40
2026 4690 4.232221 GCCCGCATTCAGATCAATTATTG 58.768 43.478 0.00 0.00 0.00 1.90
2027 4691 4.801891 CCCGCATTCAGATCAATTATTGG 58.198 43.478 5.02 0.00 0.00 3.16
2028 4692 4.321452 CCCGCATTCAGATCAATTATTGGG 60.321 45.833 5.02 0.00 0.00 4.12
2029 4693 4.279169 CCGCATTCAGATCAATTATTGGGT 59.721 41.667 5.02 0.00 0.00 4.51
2030 4694 5.473162 CCGCATTCAGATCAATTATTGGGTA 59.527 40.000 5.02 0.00 0.00 3.69
2031 4695 6.016360 CCGCATTCAGATCAATTATTGGGTAA 60.016 38.462 5.02 0.00 0.00 2.85
2032 4696 7.424803 CGCATTCAGATCAATTATTGGGTAAA 58.575 34.615 5.02 0.00 0.00 2.01
2033 4697 8.084073 CGCATTCAGATCAATTATTGGGTAAAT 58.916 33.333 5.02 0.00 0.00 1.40
2034 4698 9.199982 GCATTCAGATCAATTATTGGGTAAATG 57.800 33.333 5.02 9.70 0.00 2.32
2035 4699 9.701098 CATTCAGATCAATTATTGGGTAAATGG 57.299 33.333 5.02 0.00 0.00 3.16
2036 4700 7.288810 TCAGATCAATTATTGGGTAAATGGC 57.711 36.000 5.02 0.00 0.00 4.40
2037 4701 6.838090 TCAGATCAATTATTGGGTAAATGGCA 59.162 34.615 5.02 0.00 0.00 4.92
2038 4702 7.344093 TCAGATCAATTATTGGGTAAATGGCAA 59.656 33.333 5.02 0.00 0.00 4.52
2039 4703 7.986320 CAGATCAATTATTGGGTAAATGGCAAA 59.014 33.333 5.02 0.00 0.00 3.68
2040 4704 8.716779 AGATCAATTATTGGGTAAATGGCAAAT 58.283 29.630 5.02 0.00 0.00 2.32
2041 4705 9.341078 GATCAATTATTGGGTAAATGGCAAATT 57.659 29.630 5.02 0.00 0.00 1.82
2042 4706 8.503458 TCAATTATTGGGTAAATGGCAAATTG 57.497 30.769 5.02 0.00 34.55 2.32
2043 4707 8.324306 TCAATTATTGGGTAAATGGCAAATTGA 58.676 29.630 10.80 10.80 37.26 2.57
2044 4708 9.122779 CAATTATTGGGTAAATGGCAAATTGAT 57.877 29.630 0.00 0.00 34.88 2.57
2045 4709 8.907222 ATTATTGGGTAAATGGCAAATTGATC 57.093 30.769 0.00 0.00 0.00 2.92
2046 4710 5.752036 TTGGGTAAATGGCAAATTGATCA 57.248 34.783 0.00 0.00 0.00 2.92
2047 4711 5.752036 TGGGTAAATGGCAAATTGATCAA 57.248 34.783 11.26 11.26 0.00 2.57
2048 4712 6.119240 TGGGTAAATGGCAAATTGATCAAA 57.881 33.333 13.09 0.00 0.00 2.69
2049 4713 6.719301 TGGGTAAATGGCAAATTGATCAAAT 58.281 32.000 13.09 0.02 0.00 2.32
2050 4714 6.598457 TGGGTAAATGGCAAATTGATCAAATG 59.402 34.615 13.09 15.09 0.00 2.32
2051 4715 6.038492 GGGTAAATGGCAAATTGATCAAATGG 59.962 38.462 13.09 2.41 0.00 3.16
2052 4716 6.038492 GGTAAATGGCAAATTGATCAAATGGG 59.962 38.462 13.09 3.98 0.00 4.00
2053 4717 3.630892 TGGCAAATTGATCAAATGGGG 57.369 42.857 13.09 2.22 0.00 4.96
2054 4718 2.911636 TGGCAAATTGATCAAATGGGGT 59.088 40.909 13.09 0.00 0.00 4.95
2055 4719 3.330110 TGGCAAATTGATCAAATGGGGTT 59.670 39.130 13.09 0.00 0.00 4.11
2056 4720 3.690628 GGCAAATTGATCAAATGGGGTTG 59.309 43.478 13.09 10.60 0.00 3.77
2057 4721 4.565236 GGCAAATTGATCAAATGGGGTTGA 60.565 41.667 13.09 0.00 41.59 3.18
2058 4722 5.002516 GCAAATTGATCAAATGGGGTTGAA 58.997 37.500 13.09 0.00 40.76 2.69
2059 4723 5.122711 GCAAATTGATCAAATGGGGTTGAAG 59.877 40.000 13.09 0.00 40.76 3.02
2060 4724 5.425196 AATTGATCAAATGGGGTTGAAGG 57.575 39.130 13.09 0.00 40.76 3.46
2061 4725 2.818921 TGATCAAATGGGGTTGAAGGG 58.181 47.619 0.00 0.00 40.76 3.95
2062 4726 2.111613 TGATCAAATGGGGTTGAAGGGT 59.888 45.455 0.00 0.00 40.76 4.34
2063 4727 2.008242 TCAAATGGGGTTGAAGGGTG 57.992 50.000 0.00 0.00 34.59 4.61
2064 4728 0.975887 CAAATGGGGTTGAAGGGTGG 59.024 55.000 0.00 0.00 0.00 4.61
2065 4729 0.178906 AAATGGGGTTGAAGGGTGGG 60.179 55.000 0.00 0.00 0.00 4.61
2066 4730 2.746947 AATGGGGTTGAAGGGTGGGC 62.747 60.000 0.00 0.00 0.00 5.36
2067 4731 3.909651 GGGGTTGAAGGGTGGGCA 61.910 66.667 0.00 0.00 0.00 5.36
2068 4732 2.600470 GGGTTGAAGGGTGGGCAC 60.600 66.667 0.00 0.00 0.00 5.01
2082 4746 2.825836 GCACCAGGCAGATTCCGG 60.826 66.667 0.00 0.00 43.97 5.14
2083 4747 2.989639 CACCAGGCAGATTCCGGA 59.010 61.111 0.00 0.00 0.00 5.14
2084 4748 1.528824 CACCAGGCAGATTCCGGAT 59.471 57.895 4.15 0.00 0.00 4.18
2085 4749 0.758734 CACCAGGCAGATTCCGGATA 59.241 55.000 4.15 0.00 0.00 2.59
2086 4750 1.140852 CACCAGGCAGATTCCGGATAA 59.859 52.381 4.15 0.00 0.00 1.75
2087 4751 1.843851 ACCAGGCAGATTCCGGATAAA 59.156 47.619 4.15 0.00 0.00 1.40
2088 4752 2.241176 ACCAGGCAGATTCCGGATAAAA 59.759 45.455 4.15 0.00 0.00 1.52
2089 4753 3.117512 ACCAGGCAGATTCCGGATAAAAT 60.118 43.478 4.15 0.00 0.00 1.82
2090 4754 3.891366 CCAGGCAGATTCCGGATAAAATT 59.109 43.478 4.15 0.00 0.00 1.82
2091 4755 5.070001 CCAGGCAGATTCCGGATAAAATTA 58.930 41.667 4.15 0.00 0.00 1.40
2092 4756 5.711976 CCAGGCAGATTCCGGATAAAATTAT 59.288 40.000 4.15 0.00 0.00 1.28
2093 4757 6.127897 CCAGGCAGATTCCGGATAAAATTATC 60.128 42.308 4.15 3.05 39.01 1.75
2106 4770 7.462571 GATAAAATTATCCATACCACCACCC 57.537 40.000 2.37 0.00 34.77 4.61
2107 4771 3.502123 AATTATCCATACCACCACCCG 57.498 47.619 0.00 0.00 0.00 5.28
2108 4772 0.470766 TTATCCATACCACCACCCGC 59.529 55.000 0.00 0.00 0.00 6.13
2109 4773 1.412453 TATCCATACCACCACCCGCC 61.412 60.000 0.00 0.00 0.00 6.13
2110 4774 4.499633 CCATACCACCACCCGCCC 62.500 72.222 0.00 0.00 0.00 6.13
2111 4775 4.849310 CATACCACCACCCGCCCG 62.849 72.222 0.00 0.00 0.00 6.13
2115 4779 3.788145 CCACCACCCGCCCGAATA 61.788 66.667 0.00 0.00 0.00 1.75
2116 4780 2.508928 CACCACCCGCCCGAATAT 59.491 61.111 0.00 0.00 0.00 1.28
2117 4781 1.597027 CACCACCCGCCCGAATATC 60.597 63.158 0.00 0.00 0.00 1.63
2118 4782 2.032071 CCACCCGCCCGAATATCC 59.968 66.667 0.00 0.00 0.00 2.59
2119 4783 2.516888 CCACCCGCCCGAATATCCT 61.517 63.158 0.00 0.00 0.00 3.24
2120 4784 1.004918 CACCCGCCCGAATATCCTC 60.005 63.158 0.00 0.00 0.00 3.71
2121 4785 1.152312 ACCCGCCCGAATATCCTCT 60.152 57.895 0.00 0.00 0.00 3.69
2122 4786 0.113776 ACCCGCCCGAATATCCTCTA 59.886 55.000 0.00 0.00 0.00 2.43
2123 4787 1.263356 CCCGCCCGAATATCCTCTAA 58.737 55.000 0.00 0.00 0.00 2.10
2124 4788 1.831736 CCCGCCCGAATATCCTCTAAT 59.168 52.381 0.00 0.00 0.00 1.73
2125 4789 3.028850 CCCGCCCGAATATCCTCTAATA 58.971 50.000 0.00 0.00 0.00 0.98
2126 4790 3.641906 CCCGCCCGAATATCCTCTAATAT 59.358 47.826 0.00 0.00 0.00 1.28
2127 4791 4.501571 CCCGCCCGAATATCCTCTAATATG 60.502 50.000 0.00 0.00 0.00 1.78
2128 4792 4.051922 CGCCCGAATATCCTCTAATATGC 58.948 47.826 0.00 0.00 0.00 3.14
2129 4793 4.381411 GCCCGAATATCCTCTAATATGCC 58.619 47.826 0.00 0.00 0.00 4.40
2130 4794 4.743955 GCCCGAATATCCTCTAATATGCCC 60.744 50.000 0.00 0.00 0.00 5.36
2131 4795 4.656112 CCCGAATATCCTCTAATATGCCCT 59.344 45.833 0.00 0.00 0.00 5.19
2132 4796 5.453903 CCCGAATATCCTCTAATATGCCCTG 60.454 48.000 0.00 0.00 0.00 4.45
2133 4797 5.053145 CGAATATCCTCTAATATGCCCTGC 58.947 45.833 0.00 0.00 0.00 4.85
2134 4798 5.372373 GAATATCCTCTAATATGCCCTGCC 58.628 45.833 0.00 0.00 0.00 4.85
2155 4819 3.205338 CGCCTCCAATGTGACATCAATA 58.795 45.455 0.00 0.00 0.00 1.90
2159 4823 5.135383 CCTCCAATGTGACATCAATACCAT 58.865 41.667 0.00 0.00 0.00 3.55
2188 4852 4.558226 AATATTCTAGGCGCATGGATGA 57.442 40.909 9.43 0.17 0.00 2.92
2200 4864 4.641989 GCGCATGGATGATAATTAAGGGAT 59.358 41.667 0.30 0.00 0.00 3.85
2247 4911 9.949174 TCGGATATTTTATTCATGTGTTTGATG 57.051 29.630 0.00 0.00 0.00 3.07
2259 4923 5.045668 TGTGTTTGATGGTCGAAATCATG 57.954 39.130 11.65 0.00 34.14 3.07
2260 4924 4.759183 TGTGTTTGATGGTCGAAATCATGA 59.241 37.500 11.65 0.00 34.14 3.07
2290 4954 4.819630 TCAAGAAGCGTCCAACTGTTAATT 59.180 37.500 0.00 0.00 0.00 1.40
2291 4955 5.298276 TCAAGAAGCGTCCAACTGTTAATTT 59.702 36.000 0.00 0.00 0.00 1.82
2292 4956 5.767816 AGAAGCGTCCAACTGTTAATTTT 57.232 34.783 0.00 0.00 0.00 1.82
2293 4957 6.144078 AGAAGCGTCCAACTGTTAATTTTT 57.856 33.333 0.00 0.00 0.00 1.94
2358 5024 2.094675 GTGGCATCAATACTGGTTGCT 58.905 47.619 0.00 0.00 34.44 3.91
2411 5077 0.687920 TGCGGATTGTGGTGGAGTTA 59.312 50.000 0.00 0.00 0.00 2.24
2442 5108 5.047731 TGTGCTATAGATGCAGTCCTGATAC 60.048 44.000 3.21 0.00 41.41 2.24
2444 5110 5.417266 TGCTATAGATGCAGTCCTGATACTC 59.583 44.000 3.21 0.00 35.31 2.59
2468 5139 4.521146 CAGCTTCCTCACCATTTATGTCT 58.479 43.478 0.00 0.00 0.00 3.41
2488 5159 4.065088 TCTAGATGTTGGACAAGTTGTGC 58.935 43.478 19.61 19.61 39.30 4.57
2490 5161 1.956477 GATGTTGGACAAGTTGTGCCT 59.044 47.619 22.84 6.84 37.97 4.75
2493 5164 2.564947 TGTTGGACAAGTTGTGCCTTTT 59.435 40.909 22.84 0.00 37.97 2.27
2512 5183 5.292589 CCTTTTGTTGTTGTAGTCGTAGTGT 59.707 40.000 0.00 0.00 0.00 3.55
2516 5187 5.593968 TGTTGTTGTAGTCGTAGTGTGAAT 58.406 37.500 0.00 0.00 0.00 2.57
2517 5188 6.044046 TGTTGTTGTAGTCGTAGTGTGAATT 58.956 36.000 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 61 9.837525 CAAAACAAATTCCTCAAATTGTTTCAA 57.162 25.926 13.77 0.00 37.46 2.69
79 82 9.220635 GTTTCAAATTGTTTCATAAGCCAAAAC 57.779 29.630 0.00 0.00 34.30 2.43
123 127 7.257722 TGAGAATTTTCCTCAAACTGTTTCAC 58.742 34.615 2.13 0.00 37.68 3.18
453 571 1.635817 ATGGGCCGACTAGGTGCATT 61.636 55.000 0.00 0.00 43.70 3.56
499 617 1.115467 ATTAGTCCAGTCGGCCTCAG 58.885 55.000 0.00 0.00 0.00 3.35
500 618 1.207089 CAATTAGTCCAGTCGGCCTCA 59.793 52.381 0.00 0.00 0.00 3.86
548 678 1.668101 CTGAGTCTAGTCGGCCCACC 61.668 65.000 0.00 0.00 0.00 4.61
692 3332 3.616379 ACAACGGACTTTGTTTTTGCATG 59.384 39.130 0.00 0.00 36.22 4.06
724 3365 4.157105 TGCTAGTTTATGCGTGAGACTGTA 59.843 41.667 0.00 0.00 0.00 2.74
728 3369 3.242123 GCTTGCTAGTTTATGCGTGAGAC 60.242 47.826 0.00 0.00 0.00 3.36
731 3372 2.972625 AGCTTGCTAGTTTATGCGTGA 58.027 42.857 0.00 0.00 0.00 4.35
747 3388 5.990120 AAAGTGGAGCATCAATTAAGCTT 57.010 34.783 3.48 3.48 39.02 3.74
758 3399 6.595716 GTCATCAGTACTTAAAAGTGGAGCAT 59.404 38.462 5.62 0.00 40.07 3.79
770 3411 8.631480 TCTTGTCTAGTTGTCATCAGTACTTA 57.369 34.615 0.00 0.00 0.00 2.24
788 3429 5.240403 GTGGCATTCTTTTCTTCTCTTGTCT 59.760 40.000 0.00 0.00 0.00 3.41
794 3435 5.633830 TGATGTGGCATTCTTTTCTTCTC 57.366 39.130 0.00 0.00 0.00 2.87
840 3491 3.791245 CCTGTAAGCAGTGAGAGATTCC 58.209 50.000 0.00 0.00 41.02 3.01
842 3493 2.568956 TGCCTGTAAGCAGTGAGAGATT 59.431 45.455 0.00 0.00 41.02 2.40
862 3513 1.435577 GGAATGCAAGCTGGCTTTTG 58.564 50.000 15.68 0.00 33.42 2.44
863 3514 0.322648 GGGAATGCAAGCTGGCTTTT 59.677 50.000 15.68 8.12 33.42 2.27
864 3515 1.547472 GGGGAATGCAAGCTGGCTTT 61.547 55.000 15.68 14.65 33.42 3.51
893 3545 8.520351 AGTGCACTTAATTAATTAGTTGGAACC 58.480 33.333 15.25 1.79 0.00 3.62
908 3560 5.604758 TGATGAGCTAGAGTGCACTTAAT 57.395 39.130 22.65 12.77 34.99 1.40
948 3600 9.238368 AGCTGGTAGCAATTAACTAAATTTGTA 57.762 29.630 0.00 0.00 45.56 2.41
974 3626 8.375493 TCCTAGAAAGGTATAAGAAAAGCAGA 57.625 34.615 0.00 0.00 44.09 4.26
988 3640 9.769677 TGCATGTATATATACTCCTAGAAAGGT 57.230 33.333 20.80 0.00 44.09 3.50
995 3647 8.749354 CCACACTTGCATGTATATATACTCCTA 58.251 37.037 20.80 4.15 34.41 2.94
996 3648 7.235606 ACCACACTTGCATGTATATATACTCCT 59.764 37.037 20.80 6.05 34.41 3.69
999 3651 8.027189 CGTACCACACTTGCATGTATATATACT 58.973 37.037 20.80 6.71 34.41 2.12
1008 3660 1.225855 CACGTACCACACTTGCATGT 58.774 50.000 0.00 0.00 0.00 3.21
1028 3680 1.520192 CGCTGGTGGGTGTATGCTA 59.480 57.895 0.00 0.00 0.00 3.49
1045 3697 2.559998 AGGTTTGTTTTGTCACTGCG 57.440 45.000 0.00 0.00 0.00 5.18
1052 3704 6.319405 AGTTCGTTGGTATAGGTTTGTTTTGT 59.681 34.615 0.00 0.00 0.00 2.83
1053 3705 6.635239 CAGTTCGTTGGTATAGGTTTGTTTTG 59.365 38.462 0.00 0.00 0.00 2.44
1056 3709 4.758165 CCAGTTCGTTGGTATAGGTTTGTT 59.242 41.667 0.00 0.00 33.38 2.83
1058 3711 3.687698 CCCAGTTCGTTGGTATAGGTTTG 59.312 47.826 3.44 0.00 36.45 2.93
1062 3715 1.474498 GGCCCAGTTCGTTGGTATAGG 60.474 57.143 0.00 0.00 36.45 2.57
1064 3717 1.208535 CAGGCCCAGTTCGTTGGTATA 59.791 52.381 0.00 0.00 36.45 1.47
1066 3719 1.373435 CAGGCCCAGTTCGTTGGTA 59.627 57.895 0.00 0.00 36.45 3.25
1078 3731 3.860641 CCATATTTGTTTTGACAGGCCC 58.139 45.455 0.00 0.00 0.00 5.80
1084 3737 4.167554 TGGACGCCATATTTGTTTTGAC 57.832 40.909 0.00 0.00 0.00 3.18
1085 3738 4.279671 ACTTGGACGCCATATTTGTTTTGA 59.720 37.500 0.00 0.00 31.53 2.69
1086 3739 4.555262 ACTTGGACGCCATATTTGTTTTG 58.445 39.130 0.00 0.00 31.53 2.44
1087 3740 4.321675 GGACTTGGACGCCATATTTGTTTT 60.322 41.667 0.00 0.00 31.53 2.43
1088 3741 3.192633 GGACTTGGACGCCATATTTGTTT 59.807 43.478 0.00 0.00 31.53 2.83
1089 3742 2.752903 GGACTTGGACGCCATATTTGTT 59.247 45.455 0.00 0.00 31.53 2.83
1091 3744 2.364632 TGGACTTGGACGCCATATTTG 58.635 47.619 0.00 0.00 31.53 2.32
1115 3768 2.815647 CGGCCAAGAGGAGAACGC 60.816 66.667 2.24 0.00 36.89 4.84
1117 3770 2.436824 GGCGGCCAAGAGGAGAAC 60.437 66.667 15.62 0.00 36.89 3.01
1118 3771 4.082523 CGGCGGCCAAGAGGAGAA 62.083 66.667 20.71 0.00 36.89 2.87
1128 3781 3.902086 GAGACTAGGACGGCGGCC 61.902 72.222 28.04 28.04 0.00 6.13
1131 3784 0.820074 AGATGGAGACTAGGACGGCG 60.820 60.000 4.80 4.80 0.00 6.46
1135 3788 2.482142 CGGCAAAGATGGAGACTAGGAC 60.482 54.545 0.00 0.00 0.00 3.85
1145 3798 2.179018 CAACGGCGGCAAAGATGG 59.821 61.111 13.24 0.00 0.00 3.51
1196 3849 4.265893 GAGTGGAGTGATCAGAGTACTCA 58.734 47.826 24.44 5.48 41.93 3.41
1231 3884 4.216257 ACATGCTTGTTGTTCCACATAGTC 59.784 41.667 0.00 0.00 29.55 2.59
1243 3896 0.443478 TCGATGCGACATGCTTGTTG 59.557 50.000 14.26 14.26 46.63 3.33
1257 3910 3.192922 GACCCGGGCGTTTCGATG 61.193 66.667 24.08 0.00 0.00 3.84
1294 3947 1.970114 CAAGCTCCCCACAGCACTG 60.970 63.158 0.00 0.00 42.40 3.66
1304 3957 0.109132 CGGAATGTTTGCAAGCTCCC 60.109 55.000 14.67 10.98 0.00 4.30
1306 3959 0.039256 TGCGGAATGTTTGCAAGCTC 60.039 50.000 14.67 4.54 35.33 4.09
1429 4082 2.676839 TGACGAGTATCCTCACGAAGTC 59.323 50.000 0.00 0.00 41.61 3.01
1437 4090 1.009900 CGGCGTGACGAGTATCCTC 60.010 63.158 10.10 0.00 35.47 3.71
1438 4091 2.478890 CCGGCGTGACGAGTATCCT 61.479 63.158 10.10 0.00 35.47 3.24
1439 4092 2.025727 CCGGCGTGACGAGTATCC 59.974 66.667 10.10 0.00 35.47 2.59
1440 4093 2.025727 CCCGGCGTGACGAGTATC 59.974 66.667 10.10 0.00 35.47 2.24
1452 4105 2.033602 AAGTTGCAGTACCCCGGC 59.966 61.111 0.00 0.00 34.52 6.13
1488 4141 1.452953 CCATAGCGAGGCAGTACGGA 61.453 60.000 0.00 0.00 0.00 4.69
1491 4144 0.315568 CCTCCATAGCGAGGCAGTAC 59.684 60.000 0.00 0.00 43.01 2.73
1502 4155 3.221771 CTCCACTGAGACTCCTCCATAG 58.778 54.545 0.00 0.00 41.42 2.23
1593 4246 3.704381 CGGAGCTCGTCCTATATGC 57.296 57.895 7.83 0.00 44.35 3.14
1696 4352 6.775142 TGACCACCAAAGACATGAATTAAAGA 59.225 34.615 0.00 0.00 0.00 2.52
1732 4388 9.643693 AAATGTTATTAGCTGTTGGAGATTTTG 57.356 29.630 0.00 0.00 0.00 2.44
1739 4395 9.461312 AATGTAGAAATGTTATTAGCTGTTGGA 57.539 29.630 0.00 0.00 0.00 3.53
1776 4440 4.771590 TGCTGCTCACTGGAAATAAAAG 57.228 40.909 0.00 0.00 0.00 2.27
1786 4450 2.547211 GCCTTGTATATGCTGCTCACTG 59.453 50.000 0.00 0.00 0.00 3.66
1787 4451 2.437281 AGCCTTGTATATGCTGCTCACT 59.563 45.455 0.00 0.00 33.23 3.41
1788 4452 2.843701 AGCCTTGTATATGCTGCTCAC 58.156 47.619 0.00 0.00 33.23 3.51
1789 4453 4.897509 ATAGCCTTGTATATGCTGCTCA 57.102 40.909 0.00 0.00 36.57 4.26
1790 4454 7.335422 ACAAATATAGCCTTGTATATGCTGCTC 59.665 37.037 0.00 0.00 34.04 4.26
1791 4455 7.170965 ACAAATATAGCCTTGTATATGCTGCT 58.829 34.615 0.00 7.80 34.04 4.24
1792 4456 7.383102 ACAAATATAGCCTTGTATATGCTGC 57.617 36.000 0.00 0.00 34.04 5.25
1820 4484 9.283768 CCAGTACATGGCAACTATTATTTATCA 57.716 33.333 0.00 0.00 43.83 2.15
1837 4501 1.227380 GCTCCCTCGCCAGTACATG 60.227 63.158 0.00 0.00 0.00 3.21
1838 4502 3.221222 GCTCCCTCGCCAGTACAT 58.779 61.111 0.00 0.00 0.00 2.29
1846 4510 0.811616 CAAGTACATGGCTCCCTCGC 60.812 60.000 0.00 0.00 0.00 5.03
1847 4511 0.824109 TCAAGTACATGGCTCCCTCG 59.176 55.000 0.00 0.00 0.00 4.63
1848 4512 1.834263 AGTCAAGTACATGGCTCCCTC 59.166 52.381 0.00 0.00 25.86 4.30
1849 4513 1.958288 AGTCAAGTACATGGCTCCCT 58.042 50.000 0.00 0.00 25.86 4.20
1850 4514 2.789409 AAGTCAAGTACATGGCTCCC 57.211 50.000 5.57 0.00 33.18 4.30
1851 4515 4.762251 AGAAAAAGTCAAGTACATGGCTCC 59.238 41.667 5.57 0.00 33.18 4.70
1852 4516 5.948992 AGAAAAAGTCAAGTACATGGCTC 57.051 39.130 5.57 0.00 33.18 4.70
1853 4517 6.715347 AAAGAAAAAGTCAAGTACATGGCT 57.285 33.333 0.00 0.00 36.67 4.75
1854 4518 6.756542 ACAAAAGAAAAAGTCAAGTACATGGC 59.243 34.615 0.00 0.00 0.00 4.40
1855 4519 7.165812 CGACAAAAGAAAAAGTCAAGTACATGG 59.834 37.037 0.00 0.00 0.00 3.66
1856 4520 7.696453 ACGACAAAAGAAAAAGTCAAGTACATG 59.304 33.333 0.00 0.00 0.00 3.21
1857 4521 7.758495 ACGACAAAAGAAAAAGTCAAGTACAT 58.242 30.769 0.00 0.00 0.00 2.29
1858 4522 7.136289 ACGACAAAAGAAAAAGTCAAGTACA 57.864 32.000 0.00 0.00 0.00 2.90
1859 4523 7.961283 AGAACGACAAAAGAAAAAGTCAAGTAC 59.039 33.333 0.00 0.00 0.00 2.73
1860 4524 7.960738 CAGAACGACAAAAGAAAAAGTCAAGTA 59.039 33.333 0.00 0.00 0.00 2.24
1861 4525 6.801862 CAGAACGACAAAAGAAAAAGTCAAGT 59.198 34.615 0.00 0.00 0.00 3.16
1862 4526 6.237306 GCAGAACGACAAAAGAAAAAGTCAAG 60.237 38.462 0.00 0.00 0.00 3.02
1863 4527 5.571357 GCAGAACGACAAAAGAAAAAGTCAA 59.429 36.000 0.00 0.00 0.00 3.18
1864 4528 5.092781 GCAGAACGACAAAAGAAAAAGTCA 58.907 37.500 0.00 0.00 0.00 3.41
1865 4529 4.499399 GGCAGAACGACAAAAGAAAAAGTC 59.501 41.667 0.00 0.00 0.00 3.01
1866 4530 4.421058 GGCAGAACGACAAAAGAAAAAGT 58.579 39.130 0.00 0.00 0.00 2.66
1867 4531 3.796717 GGGCAGAACGACAAAAGAAAAAG 59.203 43.478 0.00 0.00 0.00 2.27
1868 4532 3.732471 CGGGCAGAACGACAAAAGAAAAA 60.732 43.478 0.00 0.00 0.00 1.94
1869 4533 2.223386 CGGGCAGAACGACAAAAGAAAA 60.223 45.455 0.00 0.00 0.00 2.29
1870 4534 1.332375 CGGGCAGAACGACAAAAGAAA 59.668 47.619 0.00 0.00 0.00 2.52
1871 4535 0.941542 CGGGCAGAACGACAAAAGAA 59.058 50.000 0.00 0.00 0.00 2.52
1872 4536 0.179067 ACGGGCAGAACGACAAAAGA 60.179 50.000 0.00 0.00 34.93 2.52
1873 4537 0.234884 GACGGGCAGAACGACAAAAG 59.765 55.000 0.00 0.00 34.93 2.27
1874 4538 0.462225 TGACGGGCAGAACGACAAAA 60.462 50.000 0.00 0.00 33.57 2.44
1875 4539 0.250124 ATGACGGGCAGAACGACAAA 60.250 50.000 0.00 0.00 39.17 2.83
1876 4540 0.250124 AATGACGGGCAGAACGACAA 60.250 50.000 0.00 0.00 39.17 3.18
1877 4541 0.948623 CAATGACGGGCAGAACGACA 60.949 55.000 0.00 0.00 39.90 4.35
1878 4542 1.635663 CCAATGACGGGCAGAACGAC 61.636 60.000 0.00 0.00 34.93 4.34
1879 4543 1.375396 CCAATGACGGGCAGAACGA 60.375 57.895 0.00 0.00 34.93 3.85
1880 4544 2.398554 CCCAATGACGGGCAGAACG 61.399 63.158 0.00 0.00 40.07 3.95
1881 4545 2.046285 CCCCAATGACGGGCAGAAC 61.046 63.158 0.00 0.00 45.90 3.01
1882 4546 2.354729 CCCCAATGACGGGCAGAA 59.645 61.111 0.00 0.00 45.90 3.02
1887 4551 2.755469 CCAAGCCCCAATGACGGG 60.755 66.667 0.00 0.00 46.94 5.28
1888 4552 2.755469 CCCAAGCCCCAATGACGG 60.755 66.667 0.00 0.00 0.00 4.79
1889 4553 2.755469 CCCCAAGCCCCAATGACG 60.755 66.667 0.00 0.00 0.00 4.35
1890 4554 2.364186 CCCCCAAGCCCCAATGAC 60.364 66.667 0.00 0.00 0.00 3.06
1891 4555 2.868566 ACCCCCAAGCCCCAATGA 60.869 61.111 0.00 0.00 0.00 2.57
1892 4556 2.684655 CACCCCCAAGCCCCAATG 60.685 66.667 0.00 0.00 0.00 2.82
1893 4557 2.339462 AAACACCCCCAAGCCCCAAT 62.339 55.000 0.00 0.00 0.00 3.16
1894 4558 3.028223 AAACACCCCCAAGCCCCAA 62.028 57.895 0.00 0.00 0.00 4.12
1895 4559 3.443479 AAACACCCCCAAGCCCCA 61.443 61.111 0.00 0.00 0.00 4.96
1896 4560 2.746947 ATCAAACACCCCCAAGCCCC 62.747 60.000 0.00 0.00 0.00 5.80
1897 4561 0.040499 TATCAAACACCCCCAAGCCC 59.960 55.000 0.00 0.00 0.00 5.19
1898 4562 1.182667 GTATCAAACACCCCCAAGCC 58.817 55.000 0.00 0.00 0.00 4.35
1899 4563 2.215942 AGTATCAAACACCCCCAAGC 57.784 50.000 0.00 0.00 0.00 4.01
1900 4564 5.590259 CAGATTAGTATCAAACACCCCCAAG 59.410 44.000 0.00 0.00 32.95 3.61
1901 4565 5.014755 ACAGATTAGTATCAAACACCCCCAA 59.985 40.000 0.00 0.00 32.95 4.12
1902 4566 4.538490 ACAGATTAGTATCAAACACCCCCA 59.462 41.667 0.00 0.00 32.95 4.96
1903 4567 4.881850 CACAGATTAGTATCAAACACCCCC 59.118 45.833 0.00 0.00 32.95 5.40
1904 4568 5.741011 TCACAGATTAGTATCAAACACCCC 58.259 41.667 0.00 0.00 32.95 4.95
1905 4569 6.823689 ACATCACAGATTAGTATCAAACACCC 59.176 38.462 0.00 0.00 32.95 4.61
1906 4570 7.849804 ACATCACAGATTAGTATCAAACACC 57.150 36.000 0.00 0.00 32.95 4.16
1907 4571 7.693951 GCAACATCACAGATTAGTATCAAACAC 59.306 37.037 0.00 0.00 32.95 3.32
1908 4572 7.607607 AGCAACATCACAGATTAGTATCAAACA 59.392 33.333 0.00 0.00 32.95 2.83
1909 4573 7.907045 CAGCAACATCACAGATTAGTATCAAAC 59.093 37.037 0.00 0.00 32.95 2.93
1910 4574 7.414429 GCAGCAACATCACAGATTAGTATCAAA 60.414 37.037 0.00 0.00 32.95 2.69
1911 4575 6.037500 GCAGCAACATCACAGATTAGTATCAA 59.962 38.462 0.00 0.00 32.95 2.57
1912 4576 5.525012 GCAGCAACATCACAGATTAGTATCA 59.475 40.000 0.00 0.00 32.95 2.15
1913 4577 5.757320 AGCAGCAACATCACAGATTAGTATC 59.243 40.000 0.00 0.00 0.00 2.24
1914 4578 5.678583 AGCAGCAACATCACAGATTAGTAT 58.321 37.500 0.00 0.00 0.00 2.12
1915 4579 5.089970 AGCAGCAACATCACAGATTAGTA 57.910 39.130 0.00 0.00 0.00 1.82
1916 4580 3.947868 AGCAGCAACATCACAGATTAGT 58.052 40.909 0.00 0.00 0.00 2.24
1917 4581 4.272018 GGTAGCAGCAACATCACAGATTAG 59.728 45.833 0.00 0.00 0.00 1.73
1918 4582 4.080919 AGGTAGCAGCAACATCACAGATTA 60.081 41.667 0.00 0.00 0.00 1.75
1919 4583 3.012518 GGTAGCAGCAACATCACAGATT 58.987 45.455 0.00 0.00 0.00 2.40
1920 4584 2.238144 AGGTAGCAGCAACATCACAGAT 59.762 45.455 0.00 0.00 0.00 2.90
1921 4585 1.625315 AGGTAGCAGCAACATCACAGA 59.375 47.619 0.00 0.00 0.00 3.41
1922 4586 1.736126 CAGGTAGCAGCAACATCACAG 59.264 52.381 0.00 0.00 0.00 3.66
1923 4587 1.812235 CAGGTAGCAGCAACATCACA 58.188 50.000 0.00 0.00 0.00 3.58
1924 4588 0.449388 GCAGGTAGCAGCAACATCAC 59.551 55.000 4.24 0.00 44.79 3.06
1925 4589 2.858622 GCAGGTAGCAGCAACATCA 58.141 52.632 4.24 0.00 44.79 3.07
1952 4616 7.177041 AGGCAAACACCCGACTTTATAAATAAA 59.823 33.333 0.00 0.00 0.00 1.40
1953 4617 6.660094 AGGCAAACACCCGACTTTATAAATAA 59.340 34.615 0.00 0.00 0.00 1.40
1954 4618 6.181908 AGGCAAACACCCGACTTTATAAATA 58.818 36.000 0.00 0.00 0.00 1.40
1955 4619 5.014202 AGGCAAACACCCGACTTTATAAAT 58.986 37.500 0.00 0.00 0.00 1.40
1956 4620 4.400120 AGGCAAACACCCGACTTTATAAA 58.600 39.130 0.00 0.00 0.00 1.40
1957 4621 4.023726 AGGCAAACACCCGACTTTATAA 57.976 40.909 0.00 0.00 0.00 0.98
1958 4622 3.706600 AGGCAAACACCCGACTTTATA 57.293 42.857 0.00 0.00 0.00 0.98
1959 4623 2.579410 AGGCAAACACCCGACTTTAT 57.421 45.000 0.00 0.00 0.00 1.40
1960 4624 2.351706 AAGGCAAACACCCGACTTTA 57.648 45.000 0.00 0.00 0.00 1.85
1961 4625 1.480789 AAAGGCAAACACCCGACTTT 58.519 45.000 0.00 0.00 0.00 2.66
1962 4626 1.407618 GAAAAGGCAAACACCCGACTT 59.592 47.619 0.00 0.00 0.00 3.01
1963 4627 1.029681 GAAAAGGCAAACACCCGACT 58.970 50.000 0.00 0.00 0.00 4.18
1964 4628 1.001706 GAGAAAAGGCAAACACCCGAC 60.002 52.381 0.00 0.00 0.00 4.79
1965 4629 1.133915 AGAGAAAAGGCAAACACCCGA 60.134 47.619 0.00 0.00 0.00 5.14
1966 4630 1.318576 AGAGAAAAGGCAAACACCCG 58.681 50.000 0.00 0.00 0.00 5.28
1967 4631 4.929819 TTTAGAGAAAAGGCAAACACCC 57.070 40.909 0.00 0.00 0.00 4.61
1987 4651 8.956533 AATGCGGGCAACTATTATTTATTTTT 57.043 26.923 0.00 0.00 0.00 1.94
1988 4652 8.200792 TGAATGCGGGCAACTATTATTTATTTT 58.799 29.630 0.00 0.00 0.00 1.82
1989 4653 7.721402 TGAATGCGGGCAACTATTATTTATTT 58.279 30.769 0.00 0.00 0.00 1.40
1990 4654 7.230510 TCTGAATGCGGGCAACTATTATTTATT 59.769 33.333 0.00 0.00 0.00 1.40
1991 4655 6.714810 TCTGAATGCGGGCAACTATTATTTAT 59.285 34.615 0.00 0.00 0.00 1.40
1992 4656 6.058833 TCTGAATGCGGGCAACTATTATTTA 58.941 36.000 0.00 0.00 0.00 1.40
1993 4657 4.887071 TCTGAATGCGGGCAACTATTATTT 59.113 37.500 0.00 0.00 0.00 1.40
1994 4658 4.460263 TCTGAATGCGGGCAACTATTATT 58.540 39.130 0.00 0.00 0.00 1.40
1995 4659 4.085357 TCTGAATGCGGGCAACTATTAT 57.915 40.909 0.00 0.00 0.00 1.28
1996 4660 3.552132 TCTGAATGCGGGCAACTATTA 57.448 42.857 0.00 0.00 0.00 0.98
1997 4661 2.418368 TCTGAATGCGGGCAACTATT 57.582 45.000 0.00 0.00 0.00 1.73
1998 4662 2.158769 TGATCTGAATGCGGGCAACTAT 60.159 45.455 0.00 0.00 0.00 2.12
1999 4663 1.209261 TGATCTGAATGCGGGCAACTA 59.791 47.619 0.00 0.00 0.00 2.24
2000 4664 0.035152 TGATCTGAATGCGGGCAACT 60.035 50.000 0.00 0.00 0.00 3.16
2001 4665 0.810648 TTGATCTGAATGCGGGCAAC 59.189 50.000 0.00 0.00 0.00 4.17
2002 4666 1.766494 ATTGATCTGAATGCGGGCAA 58.234 45.000 0.00 0.00 0.00 4.52
2003 4667 1.766494 AATTGATCTGAATGCGGGCA 58.234 45.000 0.00 0.00 0.00 5.36
2004 4668 4.232221 CAATAATTGATCTGAATGCGGGC 58.768 43.478 0.00 0.00 0.00 6.13
2005 4669 4.321452 CCCAATAATTGATCTGAATGCGGG 60.321 45.833 0.00 0.00 0.00 6.13
2006 4670 4.279169 ACCCAATAATTGATCTGAATGCGG 59.721 41.667 0.00 0.00 0.00 5.69
2007 4671 5.443185 ACCCAATAATTGATCTGAATGCG 57.557 39.130 0.00 0.00 0.00 4.73
2008 4672 9.199982 CATTTACCCAATAATTGATCTGAATGC 57.800 33.333 0.00 0.00 0.00 3.56
2009 4673 9.701098 CCATTTACCCAATAATTGATCTGAATG 57.299 33.333 0.00 0.00 0.00 2.67
2010 4674 8.370182 GCCATTTACCCAATAATTGATCTGAAT 58.630 33.333 0.00 0.00 0.00 2.57
2011 4675 7.344093 TGCCATTTACCCAATAATTGATCTGAA 59.656 33.333 0.00 0.00 0.00 3.02
2012 4676 6.838090 TGCCATTTACCCAATAATTGATCTGA 59.162 34.615 0.00 0.00 0.00 3.27
2013 4677 7.053316 TGCCATTTACCCAATAATTGATCTG 57.947 36.000 0.00 0.00 0.00 2.90
2014 4678 7.673641 TTGCCATTTACCCAATAATTGATCT 57.326 32.000 0.00 0.00 0.00 2.75
2015 4679 8.907222 ATTTGCCATTTACCCAATAATTGATC 57.093 30.769 0.00 0.00 0.00 2.92
2016 4680 9.122779 CAATTTGCCATTTACCCAATAATTGAT 57.877 29.630 0.00 0.00 32.95 2.57
2017 4681 8.324306 TCAATTTGCCATTTACCCAATAATTGA 58.676 29.630 0.00 0.00 35.54 2.57
2018 4682 8.503458 TCAATTTGCCATTTACCCAATAATTG 57.497 30.769 0.00 0.00 32.70 2.32
2019 4683 9.341078 GATCAATTTGCCATTTACCCAATAATT 57.659 29.630 0.00 0.00 0.00 1.40
2020 4684 8.492782 TGATCAATTTGCCATTTACCCAATAAT 58.507 29.630 0.00 0.00 0.00 1.28
2021 4685 7.855375 TGATCAATTTGCCATTTACCCAATAA 58.145 30.769 0.00 0.00 0.00 1.40
2022 4686 7.429374 TGATCAATTTGCCATTTACCCAATA 57.571 32.000 0.00 0.00 0.00 1.90
2023 4687 6.310764 TGATCAATTTGCCATTTACCCAAT 57.689 33.333 0.00 0.00 0.00 3.16
2024 4688 5.752036 TGATCAATTTGCCATTTACCCAA 57.248 34.783 0.00 0.00 0.00 4.12
2025 4689 5.752036 TTGATCAATTTGCCATTTACCCA 57.248 34.783 3.38 0.00 0.00 4.51
2026 4690 6.038492 CCATTTGATCAATTTGCCATTTACCC 59.962 38.462 9.40 0.00 0.00 3.69
2027 4691 6.038492 CCCATTTGATCAATTTGCCATTTACC 59.962 38.462 9.40 0.00 0.00 2.85
2028 4692 6.038492 CCCCATTTGATCAATTTGCCATTTAC 59.962 38.462 9.40 0.00 0.00 2.01
2029 4693 6.120905 CCCCATTTGATCAATTTGCCATTTA 58.879 36.000 9.40 0.00 0.00 1.40
2030 4694 4.951094 CCCCATTTGATCAATTTGCCATTT 59.049 37.500 9.40 0.00 0.00 2.32
2031 4695 4.018233 ACCCCATTTGATCAATTTGCCATT 60.018 37.500 9.40 0.00 0.00 3.16
2032 4696 3.524380 ACCCCATTTGATCAATTTGCCAT 59.476 39.130 9.40 0.00 0.00 4.40
2033 4697 2.911636 ACCCCATTTGATCAATTTGCCA 59.088 40.909 9.40 0.00 0.00 4.92
2034 4698 3.632643 ACCCCATTTGATCAATTTGCC 57.367 42.857 9.40 0.00 0.00 4.52
2035 4699 4.577875 TCAACCCCATTTGATCAATTTGC 58.422 39.130 9.40 0.00 30.29 3.68
2036 4700 5.644636 CCTTCAACCCCATTTGATCAATTTG 59.355 40.000 9.40 10.07 35.42 2.32
2037 4701 5.280624 CCCTTCAACCCCATTTGATCAATTT 60.281 40.000 9.40 0.00 35.42 1.82
2038 4702 4.225717 CCCTTCAACCCCATTTGATCAATT 59.774 41.667 9.40 2.66 35.42 2.32
2039 4703 3.776417 CCCTTCAACCCCATTTGATCAAT 59.224 43.478 9.40 0.00 35.42 2.57
2040 4704 3.172339 CCCTTCAACCCCATTTGATCAA 58.828 45.455 3.38 3.38 35.42 2.57
2041 4705 2.111613 ACCCTTCAACCCCATTTGATCA 59.888 45.455 0.00 0.00 35.42 2.92
2042 4706 2.497273 CACCCTTCAACCCCATTTGATC 59.503 50.000 0.00 0.00 35.42 2.92
2043 4707 2.539302 CACCCTTCAACCCCATTTGAT 58.461 47.619 0.00 0.00 35.42 2.57
2044 4708 1.482177 CCACCCTTCAACCCCATTTGA 60.482 52.381 0.00 0.00 33.55 2.69
2045 4709 0.975887 CCACCCTTCAACCCCATTTG 59.024 55.000 0.00 0.00 0.00 2.32
2046 4710 0.178906 CCCACCCTTCAACCCCATTT 60.179 55.000 0.00 0.00 0.00 2.32
2047 4711 1.469251 CCCACCCTTCAACCCCATT 59.531 57.895 0.00 0.00 0.00 3.16
2048 4712 3.190349 CCCACCCTTCAACCCCAT 58.810 61.111 0.00 0.00 0.00 4.00
2049 4713 3.909651 GCCCACCCTTCAACCCCA 61.910 66.667 0.00 0.00 0.00 4.96
2050 4714 3.909651 TGCCCACCCTTCAACCCC 61.910 66.667 0.00 0.00 0.00 4.95
2051 4715 2.600470 GTGCCCACCCTTCAACCC 60.600 66.667 0.00 0.00 0.00 4.11
2052 4716 2.600470 GGTGCCCACCCTTCAACC 60.600 66.667 6.16 0.00 45.68 3.77
2061 4725 2.036256 AATCTGCCTGGTGCCCAC 59.964 61.111 0.00 0.00 40.16 4.61
2062 4726 2.356278 GAATCTGCCTGGTGCCCA 59.644 61.111 0.00 0.00 40.16 5.36
2063 4727 2.440980 GGAATCTGCCTGGTGCCC 60.441 66.667 0.00 0.00 40.16 5.36
2064 4728 2.825836 CGGAATCTGCCTGGTGCC 60.826 66.667 0.00 0.00 40.16 5.01
2065 4729 2.615227 ATCCGGAATCTGCCTGGTGC 62.615 60.000 9.01 0.00 41.77 5.01
2066 4730 0.758734 TATCCGGAATCTGCCTGGTG 59.241 55.000 9.01 0.00 0.00 4.17
2067 4731 1.507140 TTATCCGGAATCTGCCTGGT 58.493 50.000 9.01 0.00 0.00 4.00
2068 4732 2.638480 TTTATCCGGAATCTGCCTGG 57.362 50.000 9.01 0.00 0.00 4.45
2069 4733 6.127897 GGATAATTTTATCCGGAATCTGCCTG 60.128 42.308 9.01 0.00 46.87 4.85
2070 4734 5.946377 GGATAATTTTATCCGGAATCTGCCT 59.054 40.000 9.01 0.00 46.87 4.75
2071 4735 6.196079 GGATAATTTTATCCGGAATCTGCC 57.804 41.667 9.01 0.00 46.87 4.85
2082 4746 6.150474 CGGGTGGTGGTATGGATAATTTTATC 59.850 42.308 2.32 2.32 39.01 1.75
2083 4747 6.007703 CGGGTGGTGGTATGGATAATTTTAT 58.992 40.000 0.00 0.00 0.00 1.40
2084 4748 5.378332 CGGGTGGTGGTATGGATAATTTTA 58.622 41.667 0.00 0.00 0.00 1.52
2085 4749 4.211920 CGGGTGGTGGTATGGATAATTTT 58.788 43.478 0.00 0.00 0.00 1.82
2086 4750 3.827722 CGGGTGGTGGTATGGATAATTT 58.172 45.455 0.00 0.00 0.00 1.82
2087 4751 2.488347 GCGGGTGGTGGTATGGATAATT 60.488 50.000 0.00 0.00 0.00 1.40
2088 4752 1.073284 GCGGGTGGTGGTATGGATAAT 59.927 52.381 0.00 0.00 0.00 1.28
2089 4753 0.470766 GCGGGTGGTGGTATGGATAA 59.529 55.000 0.00 0.00 0.00 1.75
2090 4754 1.412453 GGCGGGTGGTGGTATGGATA 61.412 60.000 0.00 0.00 0.00 2.59
2091 4755 2.752807 GGCGGGTGGTGGTATGGAT 61.753 63.158 0.00 0.00 0.00 3.41
2092 4756 3.404438 GGCGGGTGGTGGTATGGA 61.404 66.667 0.00 0.00 0.00 3.41
2093 4757 4.499633 GGGCGGGTGGTGGTATGG 62.500 72.222 0.00 0.00 0.00 2.74
2094 4758 4.849310 CGGGCGGGTGGTGGTATG 62.849 72.222 0.00 0.00 0.00 2.39
2098 4762 3.114825 ATATTCGGGCGGGTGGTGG 62.115 63.158 0.00 0.00 0.00 4.61
2099 4763 1.597027 GATATTCGGGCGGGTGGTG 60.597 63.158 0.00 0.00 0.00 4.17
2100 4764 2.814835 GGATATTCGGGCGGGTGGT 61.815 63.158 0.00 0.00 0.00 4.16
2101 4765 2.032071 GGATATTCGGGCGGGTGG 59.968 66.667 0.00 0.00 0.00 4.61
2102 4766 1.004918 GAGGATATTCGGGCGGGTG 60.005 63.158 0.00 0.00 0.00 4.61
2103 4767 0.113776 TAGAGGATATTCGGGCGGGT 59.886 55.000 0.00 0.00 0.00 5.28
2104 4768 1.263356 TTAGAGGATATTCGGGCGGG 58.737 55.000 0.00 0.00 0.00 6.13
2105 4769 4.621991 CATATTAGAGGATATTCGGGCGG 58.378 47.826 0.00 0.00 0.00 6.13
2106 4770 4.051922 GCATATTAGAGGATATTCGGGCG 58.948 47.826 0.00 0.00 0.00 6.13
2107 4771 4.381411 GGCATATTAGAGGATATTCGGGC 58.619 47.826 0.00 0.00 0.00 6.13
2108 4772 4.656112 AGGGCATATTAGAGGATATTCGGG 59.344 45.833 0.00 0.00 0.00 5.14
2109 4773 5.605534 CAGGGCATATTAGAGGATATTCGG 58.394 45.833 0.00 0.00 0.00 4.30
2110 4774 5.053145 GCAGGGCATATTAGAGGATATTCG 58.947 45.833 0.00 0.00 0.00 3.34
2111 4775 5.372373 GGCAGGGCATATTAGAGGATATTC 58.628 45.833 0.00 0.00 0.00 1.75
2112 4776 4.141620 CGGCAGGGCATATTAGAGGATATT 60.142 45.833 0.00 0.00 0.00 1.28
2113 4777 3.389329 CGGCAGGGCATATTAGAGGATAT 59.611 47.826 0.00 0.00 0.00 1.63
2114 4778 2.766263 CGGCAGGGCATATTAGAGGATA 59.234 50.000 0.00 0.00 0.00 2.59
2115 4779 1.556911 CGGCAGGGCATATTAGAGGAT 59.443 52.381 0.00 0.00 0.00 3.24
2116 4780 0.976641 CGGCAGGGCATATTAGAGGA 59.023 55.000 0.00 0.00 0.00 3.71
2117 4781 0.674895 GCGGCAGGGCATATTAGAGG 60.675 60.000 0.00 0.00 0.00 3.69
2118 4782 0.674895 GGCGGCAGGGCATATTAGAG 60.675 60.000 3.07 0.00 41.77 2.43
2119 4783 1.127567 AGGCGGCAGGGCATATTAGA 61.128 55.000 13.08 0.00 45.36 2.10
2120 4784 0.674895 GAGGCGGCAGGGCATATTAG 60.675 60.000 13.08 0.00 45.36 1.73
2121 4785 1.374947 GAGGCGGCAGGGCATATTA 59.625 57.895 13.08 0.00 45.36 0.98
2122 4786 2.113986 GAGGCGGCAGGGCATATT 59.886 61.111 13.08 0.00 45.36 1.28
2123 4787 3.958860 GGAGGCGGCAGGGCATAT 61.959 66.667 13.08 0.00 45.36 1.78
2128 4792 4.431131 ACATTGGAGGCGGCAGGG 62.431 66.667 13.08 0.00 0.00 4.45
2129 4793 3.136123 CACATTGGAGGCGGCAGG 61.136 66.667 13.08 0.00 0.00 4.85
2130 4794 2.046023 TCACATTGGAGGCGGCAG 60.046 61.111 13.08 0.00 0.00 4.85
2131 4795 2.359850 GTCACATTGGAGGCGGCA 60.360 61.111 13.08 0.00 0.00 5.69
2132 4796 1.718757 GATGTCACATTGGAGGCGGC 61.719 60.000 0.00 0.00 0.00 6.53
2133 4797 0.392863 TGATGTCACATTGGAGGCGG 60.393 55.000 0.00 0.00 0.00 6.13
2134 4798 1.452110 TTGATGTCACATTGGAGGCG 58.548 50.000 0.00 0.00 0.00 5.52
2142 4806 5.163353 TGTCGGTATGGTATTGATGTCACAT 60.163 40.000 0.00 0.00 0.00 3.21
2155 4819 5.548406 GCCTAGAATATTTGTCGGTATGGT 58.452 41.667 0.00 0.00 0.00 3.55
2159 4823 3.068448 TGCGCCTAGAATATTTGTCGGTA 59.932 43.478 4.18 0.00 0.00 4.02
2200 4864 5.639506 CCGAGATGAACTTTAAGAAGCAGAA 59.360 40.000 0.00 0.00 36.29 3.02
2246 4910 6.816134 TGATTTTTCTCATGATTTCGACCA 57.184 33.333 0.00 0.00 0.00 4.02
2247 4911 7.530010 TCTTGATTTTTCTCATGATTTCGACC 58.470 34.615 0.00 0.00 0.00 4.79
2259 4923 4.749245 TGGACGCTTCTTGATTTTTCTC 57.251 40.909 0.00 0.00 0.00 2.87
2260 4924 4.580580 AGTTGGACGCTTCTTGATTTTTCT 59.419 37.500 0.00 0.00 0.00 2.52
2320 4984 3.652274 CCACGTTGGATGCAAGAAATTT 58.348 40.909 0.00 0.00 40.96 1.82
2321 4985 2.610232 GCCACGTTGGATGCAAGAAATT 60.610 45.455 0.00 0.00 40.96 1.82
2331 4996 2.945008 CAGTATTGATGCCACGTTGGAT 59.055 45.455 8.04 0.46 40.96 3.41
2358 5024 0.394192 CCATGCGCCTAGAGGATTCA 59.606 55.000 4.18 0.00 37.39 2.57
2379 5045 2.178912 ATCCGCATAAATGTACCCCG 57.821 50.000 0.00 0.00 0.00 5.73
2380 5046 3.004315 CACAATCCGCATAAATGTACCCC 59.996 47.826 0.00 0.00 0.00 4.95
2385 5051 2.426738 CCACCACAATCCGCATAAATGT 59.573 45.455 0.00 0.00 0.00 2.71
2411 5077 6.708054 GGACTGCATCTATAGCACAACTATTT 59.292 38.462 0.00 0.00 41.91 1.40
2442 5108 0.622665 AATGGTGAGGAAGCTGGGAG 59.377 55.000 0.00 0.00 0.00 4.30
2444 5110 2.806945 TAAATGGTGAGGAAGCTGGG 57.193 50.000 0.00 0.00 0.00 4.45
2468 5139 3.146066 GGCACAACTTGTCCAACATCTA 58.854 45.455 0.00 0.00 0.00 1.98
2488 5159 5.292589 ACACTACGACTACAACAACAAAAGG 59.707 40.000 0.00 0.00 0.00 3.11
2490 5161 5.868258 TCACACTACGACTACAACAACAAAA 59.132 36.000 0.00 0.00 0.00 2.44
2493 5164 4.635833 TCACACTACGACTACAACAACA 57.364 40.909 0.00 0.00 0.00 3.33
2512 5183 3.671008 ACGCTACAGGTGTACAATTCA 57.329 42.857 0.00 0.00 36.83 2.57
2516 5187 2.894763 ACAACGCTACAGGTGTACAA 57.105 45.000 0.00 0.00 40.78 2.41
2517 5188 2.867368 CAAACAACGCTACAGGTGTACA 59.133 45.455 0.00 0.00 41.90 2.90
2524 5195 3.291585 CTTTCAGCAAACAACGCTACAG 58.708 45.455 0.00 0.00 37.72 2.74
2526 5197 2.650608 CCTTTCAGCAAACAACGCTAC 58.349 47.619 0.00 0.00 37.72 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.