Multiple sequence alignment - TraesCS4B01G327700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G327700 chr4B 100.000 2741 0 0 1 2741 618586757 618589497 0.000000e+00 5062.0
1 TraesCS4B01G327700 chr5A 92.346 810 51 4 761 1566 666225545 666226347 0.000000e+00 1142.0
2 TraesCS4B01G327700 chr5A 95.882 680 21 3 2066 2739 666228356 666229034 0.000000e+00 1094.0
3 TraesCS4B01G327700 chr5A 90.104 192 8 2 1577 1768 666226394 666226574 3.530000e-59 239.0
4 TraesCS4B01G327700 chr5A 89.571 163 12 2 40 202 666224978 666225135 4.630000e-48 202.0
5 TraesCS4B01G327700 chr5A 93.636 110 7 0 2017 2126 666228246 666228355 6.070000e-37 165.0
6 TraesCS4B01G327700 chr5A 95.082 61 3 0 1891 1951 666228182 666228242 2.250000e-16 97.1
7 TraesCS4B01G327700 chr4D 91.708 808 53 8 761 1566 485379202 485379997 0.000000e+00 1109.0
8 TraesCS4B01G327700 chr4D 95.259 696 27 3 2051 2741 485382395 485383089 0.000000e+00 1098.0
9 TraesCS4B01G327700 chr4D 85.340 573 64 15 202 764 485378326 485378888 2.370000e-160 575.0
10 TraesCS4B01G327700 chr4D 88.421 190 11 2 1579 1768 485380058 485380236 4.600000e-53 219.0
11 TraesCS4B01G327700 chr4D 89.937 159 12 2 40 198 485374632 485374786 4.630000e-48 202.0
12 TraesCS4B01G327700 chr4D 94.262 122 7 0 2017 2138 485382191 485382312 1.300000e-43 187.0
13 TraesCS4B01G327700 chr4D 93.636 110 7 0 1775 1884 485380297 485380406 6.070000e-37 165.0
14 TraesCS4B01G327700 chr4D 92.222 90 5 1 2051 2138 485382309 485382398 2.870000e-25 126.0
15 TraesCS4B01G327700 chr4D 97.222 72 2 0 1880 1951 485382116 485382187 3.710000e-24 122.0
16 TraesCS4B01G327700 chrUn 97.727 44 0 1 1 43 36914041 36914084 1.050000e-09 75.0
17 TraesCS4B01G327700 chrUn 97.727 44 0 1 1 43 325091230 325091273 1.050000e-09 75.0
18 TraesCS4B01G327700 chrUn 97.727 44 0 1 1 43 442907906 442907863 1.050000e-09 75.0
19 TraesCS4B01G327700 chrUn 97.619 42 1 0 1 42 476107116 476107075 3.790000e-09 73.1
20 TraesCS4B01G327700 chrUn 95.455 44 1 1 1 43 36997949 36997992 4.900000e-08 69.4
21 TraesCS4B01G327700 chrUn 95.455 44 1 1 1 43 38084883 38084840 4.900000e-08 69.4
22 TraesCS4B01G327700 chr7A 95.652 46 1 1 3 48 80504987 80504943 3.790000e-09 73.1
23 TraesCS4B01G327700 chr7B 100.000 38 0 0 1 38 12479515 12479552 1.360000e-08 71.3
24 TraesCS4B01G327700 chr1B 100.000 38 0 0 1 38 9926988 9927025 1.360000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G327700 chr4B 618586757 618589497 2740 False 5062.000000 5062 100.000000 1 2741 1 chr4B.!!$F1 2740
1 TraesCS4B01G327700 chr5A 666224978 666229034 4056 False 489.850000 1142 92.770167 40 2739 6 chr5A.!!$F1 2699
2 TraesCS4B01G327700 chr4D 485374632 485383089 8457 False 422.555556 1109 92.000778 40 2741 9 chr4D.!!$F1 2701

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
461 4000 0.033601 TATGAGCCCGGCACCAAATT 60.034 50.0 13.15 0.0 0.0 1.82 F
1076 4939 0.035152 ACATTCTTCTCCCGCATGCA 60.035 50.0 19.57 0.0 0.0 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1437 5300 0.033366 TGTTCTCTGTAGCGCTTGCA 59.967 50.0 18.68 14.84 42.66 4.08 R
1886 5851 1.448985 GTTCCATCGGCTTAACTGCA 58.551 50.0 0.00 0.00 34.04 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.434483 GGGACGAATGGCCCTTTT 57.566 55.556 0.00 0.00 41.31 2.27
27 28 2.666085 GGGACGAATGGCCCTTTTT 58.334 52.632 0.00 0.00 41.31 1.94
28 29 0.530744 GGGACGAATGGCCCTTTTTC 59.469 55.000 0.00 0.00 41.31 2.29
29 30 1.545841 GGACGAATGGCCCTTTTTCT 58.454 50.000 0.00 0.00 0.00 2.52
30 31 2.619590 GGGACGAATGGCCCTTTTTCTA 60.620 50.000 0.00 0.00 41.31 2.10
31 32 2.422479 GGACGAATGGCCCTTTTTCTAC 59.578 50.000 0.00 0.00 0.00 2.59
32 33 3.344515 GACGAATGGCCCTTTTTCTACT 58.655 45.455 0.00 0.00 0.00 2.57
33 34 4.510571 GACGAATGGCCCTTTTTCTACTA 58.489 43.478 0.00 0.00 0.00 1.82
34 35 4.514401 ACGAATGGCCCTTTTTCTACTAG 58.486 43.478 0.00 0.00 0.00 2.57
35 36 4.019591 ACGAATGGCCCTTTTTCTACTAGT 60.020 41.667 0.00 0.00 0.00 2.57
36 37 4.332819 CGAATGGCCCTTTTTCTACTAGTG 59.667 45.833 5.39 0.00 0.00 2.74
37 38 4.929146 ATGGCCCTTTTTCTACTAGTGT 57.071 40.909 5.39 0.00 0.00 3.55
38 39 4.717279 TGGCCCTTTTTCTACTAGTGTT 57.283 40.909 5.39 0.00 0.00 3.32
51 52 9.886132 TTTCTACTAGTGTTTGAAGAAAAGTCT 57.114 29.630 5.39 0.00 31.86 3.24
62 63 9.750125 GTTTGAAGAAAAGTCTGTCCATTTTAT 57.250 29.630 0.00 0.00 33.05 1.40
70 71 8.463930 AAAGTCTGTCCATTTTATTCACTTGA 57.536 30.769 0.00 0.00 0.00 3.02
72 73 9.739276 AAGTCTGTCCATTTTATTCACTTGATA 57.261 29.630 0.00 0.00 0.00 2.15
76 77 8.506168 TGTCCATTTTATTCACTTGATAGACC 57.494 34.615 0.00 0.00 0.00 3.85
189 190 1.815003 GCATGTTCTGTGCTAGGCTTT 59.185 47.619 0.00 0.00 39.45 3.51
198 3564 8.243426 TGTTCTGTGCTAGGCTTTTAATTTATG 58.757 33.333 0.00 0.00 0.00 1.90
202 3568 9.722056 CTGTGCTAGGCTTTTAATTTATGTTAG 57.278 33.333 0.00 0.00 0.00 2.34
204 3570 8.135529 GTGCTAGGCTTTTAATTTATGTTAGGG 58.864 37.037 0.00 0.00 0.00 3.53
206 3572 8.692710 GCTAGGCTTTTAATTTATGTTAGGGTT 58.307 33.333 0.00 0.00 0.00 4.11
226 3762 2.044123 AAATGACATTCGAGGAGCCC 57.956 50.000 0.05 0.00 0.00 5.19
233 3769 0.824759 ATTCGAGGAGCCCTACACAC 59.175 55.000 0.00 0.00 31.76 3.82
234 3770 0.541063 TTCGAGGAGCCCTACACACA 60.541 55.000 0.00 0.00 31.76 3.72
235 3771 1.215647 CGAGGAGCCCTACACACAC 59.784 63.158 0.00 0.00 31.76 3.82
252 3788 3.569701 ACACACAAAAATCAGCTCCGAAT 59.430 39.130 0.00 0.00 0.00 3.34
254 3790 5.106555 ACACACAAAAATCAGCTCCGAATAG 60.107 40.000 0.00 0.00 0.00 1.73
256 3792 6.092122 CACACAAAAATCAGCTCCGAATAGTA 59.908 38.462 0.00 0.00 0.00 1.82
257 3793 6.092259 ACACAAAAATCAGCTCCGAATAGTAC 59.908 38.462 0.00 0.00 0.00 2.73
258 3794 6.092122 CACAAAAATCAGCTCCGAATAGTACA 59.908 38.462 0.00 0.00 0.00 2.90
259 3795 6.823689 ACAAAAATCAGCTCCGAATAGTACAT 59.176 34.615 0.00 0.00 0.00 2.29
260 3796 7.336931 ACAAAAATCAGCTCCGAATAGTACATT 59.663 33.333 0.00 0.00 0.00 2.71
264 3800 8.958119 AATCAGCTCCGAATAGTACATTTTTA 57.042 30.769 0.00 0.00 0.00 1.52
265 3801 8.958119 ATCAGCTCCGAATAGTACATTTTTAA 57.042 30.769 0.00 0.00 0.00 1.52
269 3805 9.836076 AGCTCCGAATAGTACATTTTTAAAAAC 57.164 29.630 15.35 4.11 0.00 2.43
270 3806 9.836076 GCTCCGAATAGTACATTTTTAAAAACT 57.164 29.630 15.35 11.12 0.00 2.66
295 3831 9.230122 CTTTTTCATAGGCCCAAATTTTGTTAT 57.770 29.630 0.00 0.00 0.00 1.89
303 3839 5.226396 GCCCAAATTTTGTTATTTTTGCCC 58.774 37.500 8.26 0.00 0.00 5.36
304 3840 5.221322 GCCCAAATTTTGTTATTTTTGCCCA 60.221 36.000 8.26 0.00 0.00 5.36
307 3843 7.039853 CCCAAATTTTGTTATTTTTGCCCAGAT 60.040 33.333 8.26 0.00 0.00 2.90
310 3846 8.922931 AATTTTGTTATTTTTGCCCAGATCTT 57.077 26.923 0.00 0.00 0.00 2.40
312 3848 7.961325 TTTGTTATTTTTGCCCAGATCTTTC 57.039 32.000 0.00 0.00 0.00 2.62
329 3865 8.413309 AGATCTTTCTGAATTTCCAAACATCA 57.587 30.769 0.00 0.00 0.00 3.07
369 3905 1.645455 CATTCGCGAGCATCTTGGG 59.355 57.895 9.59 0.00 0.00 4.12
378 3914 3.334691 CGAGCATCTTGGGTGTCTAAAA 58.665 45.455 0.00 0.00 0.00 1.52
436 3975 4.214545 ACCGATTTTATTGTTCACAAGCGA 59.785 37.500 0.00 0.00 39.47 4.93
439 3978 6.077197 CGATTTTATTGTTCACAAGCGAGAA 58.923 36.000 0.00 0.00 39.47 2.87
450 3989 1.869767 CAAGCGAGAACATATGAGCCC 59.130 52.381 10.38 0.00 0.00 5.19
454 3993 0.106708 GAGAACATATGAGCCCGGCA 59.893 55.000 13.15 0.00 0.00 5.69
459 3998 0.751277 CATATGAGCCCGGCACCAAA 60.751 55.000 13.15 0.00 0.00 3.28
460 3999 0.185901 ATATGAGCCCGGCACCAAAT 59.814 50.000 13.15 0.00 0.00 2.32
461 4000 0.033601 TATGAGCCCGGCACCAAATT 60.034 50.000 13.15 0.00 0.00 1.82
462 4001 1.606885 ATGAGCCCGGCACCAAATTG 61.607 55.000 13.15 0.00 0.00 2.32
464 4003 1.815817 GAGCCCGGCACCAAATTGTT 61.816 55.000 13.15 0.00 0.00 2.83
465 4004 1.667510 GCCCGGCACCAAATTGTTG 60.668 57.895 3.91 0.00 34.25 3.33
466 4005 1.745264 CCCGGCACCAAATTGTTGT 59.255 52.632 0.00 0.00 32.40 3.32
482 4021 1.721926 GTTGTTCTCGCTCTTCTTCCG 59.278 52.381 0.00 0.00 0.00 4.30
507 4046 7.360691 CGCTTCTATTATATTCACATGCAGCTT 60.361 37.037 0.00 0.00 0.00 3.74
512 4051 7.592885 ATTATATTCACATGCAGCTTTCCTT 57.407 32.000 0.00 0.00 0.00 3.36
518 4057 0.822164 ATGCAGCTTTCCTTCATGGC 59.178 50.000 0.00 0.00 35.26 4.40
526 4065 4.285260 AGCTTTCCTTCATGGCTCAAAAAT 59.715 37.500 0.00 0.00 35.26 1.82
527 4066 4.999311 GCTTTCCTTCATGGCTCAAAAATT 59.001 37.500 0.00 0.00 35.26 1.82
529 4068 6.650390 GCTTTCCTTCATGGCTCAAAAATTTA 59.350 34.615 0.00 0.00 35.26 1.40
530 4069 7.335171 GCTTTCCTTCATGGCTCAAAAATTTAT 59.665 33.333 0.00 0.00 35.26 1.40
531 4070 9.223099 CTTTCCTTCATGGCTCAAAAATTTATT 57.777 29.630 0.00 0.00 35.26 1.40
534 4073 9.218440 TCCTTCATGGCTCAAAAATTTATTTTC 57.782 29.630 1.26 0.00 35.96 2.29
535 4074 8.170553 CCTTCATGGCTCAAAAATTTATTTTCG 58.829 33.333 1.26 0.00 38.92 3.46
536 4075 8.824159 TTCATGGCTCAAAAATTTATTTTCGA 57.176 26.923 1.26 0.00 38.92 3.71
537 4076 9.434420 TTCATGGCTCAAAAATTTATTTTCGAT 57.566 25.926 1.26 0.00 38.92 3.59
592 4131 2.380249 TGAACATGGGGTGTATGGGAAA 59.620 45.455 0.00 0.00 41.14 3.13
593 4132 2.826674 ACATGGGGTGTATGGGAAAG 57.173 50.000 0.00 0.00 39.91 2.62
603 4142 4.082949 GGTGTATGGGAAAGTAGTTGCAAC 60.083 45.833 22.17 22.17 0.00 4.17
659 4201 5.329035 ACATTCCTGGATGTTGCATTAAC 57.671 39.130 0.00 0.00 36.92 2.01
689 4231 5.606348 AAAGTGGGTTTCAAGTTAATGCA 57.394 34.783 0.00 0.00 0.00 3.96
691 4233 3.573967 AGTGGGTTTCAAGTTAATGCAGG 59.426 43.478 0.00 0.00 0.00 4.85
699 4241 5.499004 TCAAGTTAATGCAGGGTAAGAGT 57.501 39.130 0.00 0.00 0.00 3.24
721 4263 6.332630 AGTGGTTGCATTAATTTAGTCATGC 58.667 36.000 5.11 5.11 42.07 4.06
726 4268 6.712179 TGCATTAATTTAGTCATGCATCCA 57.288 33.333 9.23 0.00 45.50 3.41
747 4289 5.470437 TCCAAAACAAAGAAACAAACCCAAC 59.530 36.000 0.00 0.00 0.00 3.77
749 4291 6.369799 CAAAACAAAGAAACAAACCCAACAG 58.630 36.000 0.00 0.00 0.00 3.16
750 4292 3.595173 ACAAAGAAACAAACCCAACAGC 58.405 40.909 0.00 0.00 0.00 4.40
752 4294 1.470051 AGAAACAAACCCAACAGCGT 58.530 45.000 0.00 0.00 0.00 5.07
806 4665 5.743872 GCCACACAAAAAGACACTTCTAAAG 59.256 40.000 0.00 0.00 0.00 1.85
810 4669 6.183360 ACACAAAAAGACACTTCTAAAGGAGC 60.183 38.462 0.00 0.00 0.00 4.70
812 4671 3.704800 AAGACACTTCTAAAGGAGCCC 57.295 47.619 0.00 0.00 0.00 5.19
819 4678 0.550147 TCTAAAGGAGCCCCAAGCCT 60.550 55.000 0.00 0.00 45.47 4.58
840 4702 7.619965 AGCCTCCAATCTAATCTATTCTTAGC 58.380 38.462 0.00 0.00 0.00 3.09
858 4720 7.615582 TCTTAGCTTCGATTTCAATGACAAT 57.384 32.000 0.00 0.00 0.00 2.71
891 4754 3.200165 GCCACTCCCCTTTAAGTAGTCAT 59.800 47.826 0.00 0.00 0.00 3.06
932 4795 1.216678 TGAGGGGCCACTTTCAGAAAA 59.783 47.619 10.15 0.00 0.00 2.29
971 4834 2.553466 CCTCCTAGTCCTACATCCCTCG 60.553 59.091 0.00 0.00 0.00 4.63
1047 4910 1.154301 GATCTCGGCGAGCGATCTC 60.154 63.158 31.01 17.18 37.91 2.75
1056 4919 1.833860 CGAGCGATCTCAAGAAGGTC 58.166 55.000 0.00 7.54 39.30 3.85
1057 4920 1.133216 CGAGCGATCTCAAGAAGGTCA 59.867 52.381 0.00 0.00 39.30 4.02
1076 4939 0.035152 ACATTCTTCTCCCGCATGCA 60.035 50.000 19.57 0.00 0.00 3.96
1078 4941 0.035152 ATTCTTCTCCCGCATGCACA 60.035 50.000 19.57 0.00 0.00 4.57
1080 4943 0.035152 TCTTCTCCCGCATGCACATT 60.035 50.000 19.57 0.00 0.00 2.71
1083 4946 1.378531 TCTCCCGCATGCACATTTAC 58.621 50.000 19.57 0.00 0.00 2.01
1087 4950 1.136356 CGCATGCACATTTACGCCA 59.864 52.632 19.57 0.00 0.00 5.69
1104 4967 1.528824 CATTGCCTCCATCTCCGGT 59.471 57.895 0.00 0.00 0.00 5.28
1106 4969 1.987807 ATTGCCTCCATCTCCGGTGG 61.988 60.000 0.00 1.35 41.77 4.61
1107 4970 3.083997 GCCTCCATCTCCGGTGGT 61.084 66.667 9.27 0.00 41.06 4.16
1108 4971 2.903357 CCTCCATCTCCGGTGGTG 59.097 66.667 9.89 9.89 37.96 4.17
1110 4973 1.050988 CCTCCATCTCCGGTGGTGAT 61.051 60.000 18.28 7.19 36.51 3.06
1114 4977 0.179045 CATCTCCGGTGGTGATTCCC 60.179 60.000 11.42 0.00 34.23 3.97
1116 4979 4.090588 TCCGGTGGTGATTCCCGC 62.091 66.667 0.00 0.00 40.38 6.13
1128 4991 1.719063 ATTCCCGCATGCCTACCCAT 61.719 55.000 13.15 0.00 0.00 4.00
1129 4992 2.595463 CCCGCATGCCTACCCATG 60.595 66.667 13.15 0.00 44.18 3.66
1130 4993 2.595463 CCGCATGCCTACCCATGG 60.595 66.667 13.15 4.14 42.18 3.66
1154 5017 2.251642 GCACCCAAGTCGACCACAC 61.252 63.158 13.01 0.00 0.00 3.82
1218 5081 2.022764 TCCCTGCATGTGTTGATACG 57.977 50.000 0.00 0.00 0.00 3.06
1241 5104 1.153549 GGCTCGTCCTCCATGTGTC 60.154 63.158 0.00 0.00 0.00 3.67
1435 5298 2.042831 ACCGGCATCAAAGCTGCTC 61.043 57.895 1.00 0.00 39.58 4.26
1437 5300 1.748122 CGGCATCAAAGCTGCTCCT 60.748 57.895 1.00 0.00 39.60 3.69
1470 5333 3.251004 CAGAGAACAAACAAGGGCAGTAC 59.749 47.826 0.00 0.00 0.00 2.73
1476 5339 2.335316 AACAAGGGCAGTACGTCAAA 57.665 45.000 0.00 0.00 0.00 2.69
1493 5356 3.107601 TCAAATACTCTGGGGACTCTGG 58.892 50.000 0.00 0.00 0.00 3.86
1620 5531 3.741476 GCTCCAGCACCGGCAAAG 61.741 66.667 0.00 0.00 44.61 2.77
1626 5537 0.447801 CAGCACCGGCAAAGATGTAC 59.552 55.000 0.00 0.00 44.61 2.90
1627 5538 0.324943 AGCACCGGCAAAGATGTACT 59.675 50.000 0.00 0.00 44.61 2.73
1628 5539 1.553248 AGCACCGGCAAAGATGTACTA 59.447 47.619 0.00 0.00 44.61 1.82
1683 5594 2.693871 AAGGCATGCGGGAGGGATT 61.694 57.895 12.44 0.00 0.00 3.01
1695 5606 0.178978 GAGGGATTGGAATGGGCCTC 60.179 60.000 4.53 0.00 0.00 4.70
1768 5679 0.247736 GACTTGGAGTCTGATGCCGT 59.752 55.000 0.97 0.00 41.88 5.68
1769 5680 1.476891 GACTTGGAGTCTGATGCCGTA 59.523 52.381 0.97 0.00 41.88 4.02
1772 5683 3.704566 ACTTGGAGTCTGATGCCGTATAA 59.295 43.478 0.00 0.00 0.00 0.98
1773 5684 4.345257 ACTTGGAGTCTGATGCCGTATAAT 59.655 41.667 0.00 0.00 0.00 1.28
1853 5818 7.642978 GTGAAATCATCATAATGTGCAAGTCTC 59.357 37.037 0.00 0.00 40.97 3.36
1859 5824 6.882610 TCATAATGTGCAAGTCTCTTTGTT 57.117 33.333 0.00 0.00 0.00 2.83
1888 5853 9.691362 TTAATTACTTCAACTTGAAAGGATTGC 57.309 29.630 5.72 0.00 35.73 3.56
1889 5854 6.707440 TTACTTCAACTTGAAAGGATTGCA 57.293 33.333 5.72 0.00 35.73 4.08
1894 7590 6.707440 TCAACTTGAAAGGATTGCAGTTAA 57.293 33.333 0.00 0.00 0.00 2.01
1929 7625 4.728608 CACGCGAAAGTAGCCATAAATTTC 59.271 41.667 15.93 0.00 0.00 2.17
1951 7647 2.814280 CGCCCTTCGTCCATAGTTAT 57.186 50.000 0.00 0.00 0.00 1.89
1953 7649 4.247267 CGCCCTTCGTCCATAGTTATAA 57.753 45.455 0.00 0.00 0.00 0.98
1954 7650 4.235360 CGCCCTTCGTCCATAGTTATAAG 58.765 47.826 0.00 0.00 0.00 1.73
1955 7651 4.022589 CGCCCTTCGTCCATAGTTATAAGA 60.023 45.833 0.00 0.00 0.00 2.10
1956 7652 5.228665 GCCCTTCGTCCATAGTTATAAGAC 58.771 45.833 0.00 0.00 0.00 3.01
1957 7653 5.221382 GCCCTTCGTCCATAGTTATAAGACA 60.221 44.000 3.57 0.00 0.00 3.41
1958 7654 6.214399 CCCTTCGTCCATAGTTATAAGACAC 58.786 44.000 3.57 0.00 0.00 3.67
1959 7655 6.214399 CCTTCGTCCATAGTTATAAGACACC 58.786 44.000 3.57 0.00 0.00 4.16
1960 7656 6.183360 CCTTCGTCCATAGTTATAAGACACCA 60.183 42.308 3.57 0.00 0.00 4.17
1961 7657 6.778834 TCGTCCATAGTTATAAGACACCAA 57.221 37.500 3.57 0.00 0.00 3.67
1962 7658 6.567050 TCGTCCATAGTTATAAGACACCAAC 58.433 40.000 3.57 0.00 0.00 3.77
1963 7659 6.153170 TCGTCCATAGTTATAAGACACCAACA 59.847 38.462 3.57 0.00 0.00 3.33
1964 7660 6.255020 CGTCCATAGTTATAAGACACCAACAC 59.745 42.308 3.57 0.00 0.00 3.32
1965 7661 7.101054 GTCCATAGTTATAAGACACCAACACA 58.899 38.462 0.00 0.00 0.00 3.72
1966 7662 7.769044 GTCCATAGTTATAAGACACCAACACAT 59.231 37.037 0.00 0.00 0.00 3.21
1967 7663 8.325787 TCCATAGTTATAAGACACCAACACATT 58.674 33.333 0.00 0.00 0.00 2.71
1968 7664 8.956426 CCATAGTTATAAGACACCAACACATTT 58.044 33.333 0.00 0.00 0.00 2.32
1969 7665 9.773328 CATAGTTATAAGACACCAACACATTTG 57.227 33.333 0.00 0.00 0.00 2.32
1970 7666 9.733556 ATAGTTATAAGACACCAACACATTTGA 57.266 29.630 0.00 0.00 0.00 2.69
1971 7667 8.099364 AGTTATAAGACACCAACACATTTGAG 57.901 34.615 0.00 0.00 0.00 3.02
1972 7668 5.964958 ATAAGACACCAACACATTTGAGG 57.035 39.130 0.00 0.00 0.00 3.86
1973 7669 3.297134 AGACACCAACACATTTGAGGT 57.703 42.857 0.00 0.00 35.81 3.85
1974 7670 3.631250 AGACACCAACACATTTGAGGTT 58.369 40.909 0.00 0.00 34.02 3.50
1975 7671 3.632145 AGACACCAACACATTTGAGGTTC 59.368 43.478 0.00 2.26 34.02 3.62
1976 7672 3.360867 ACACCAACACATTTGAGGTTCA 58.639 40.909 0.00 0.00 34.02 3.18
1977 7673 3.766591 ACACCAACACATTTGAGGTTCAA 59.233 39.130 0.00 0.00 34.02 2.69
1978 7674 4.111916 CACCAACACATTTGAGGTTCAAC 58.888 43.478 0.00 0.00 35.89 3.18
1979 7675 3.132111 ACCAACACATTTGAGGTTCAACC 59.868 43.478 0.00 0.00 35.89 3.77
1993 7689 3.813724 GGTTCAACCTTACACTCTCAACC 59.186 47.826 0.00 0.00 34.73 3.77
1994 7690 4.444449 GGTTCAACCTTACACTCTCAACCT 60.444 45.833 0.00 0.00 34.73 3.50
1995 7691 5.123936 GTTCAACCTTACACTCTCAACCTT 58.876 41.667 0.00 0.00 0.00 3.50
1996 7692 6.285990 GTTCAACCTTACACTCTCAACCTTA 58.714 40.000 0.00 0.00 0.00 2.69
1997 7693 6.681729 TCAACCTTACACTCTCAACCTTAT 57.318 37.500 0.00 0.00 0.00 1.73
1998 7694 7.074653 TCAACCTTACACTCTCAACCTTATT 57.925 36.000 0.00 0.00 0.00 1.40
1999 7695 8.197592 TCAACCTTACACTCTCAACCTTATTA 57.802 34.615 0.00 0.00 0.00 0.98
2000 7696 8.092687 TCAACCTTACACTCTCAACCTTATTAC 58.907 37.037 0.00 0.00 0.00 1.89
2001 7697 7.793948 ACCTTACACTCTCAACCTTATTACT 57.206 36.000 0.00 0.00 0.00 2.24
2002 7698 8.203681 ACCTTACACTCTCAACCTTATTACTT 57.796 34.615 0.00 0.00 0.00 2.24
2003 7699 8.312564 ACCTTACACTCTCAACCTTATTACTTC 58.687 37.037 0.00 0.00 0.00 3.01
2004 7700 8.311836 CCTTACACTCTCAACCTTATTACTTCA 58.688 37.037 0.00 0.00 0.00 3.02
2005 7701 9.706691 CTTACACTCTCAACCTTATTACTTCAA 57.293 33.333 0.00 0.00 0.00 2.69
2007 7703 8.974060 ACACTCTCAACCTTATTACTTCAAAA 57.026 30.769 0.00 0.00 0.00 2.44
2008 7704 9.403583 ACACTCTCAACCTTATTACTTCAAAAA 57.596 29.630 0.00 0.00 0.00 1.94
2072 7768 2.160417 CAGGCATTTCGTTGGAACTCTC 59.840 50.000 0.00 0.00 0.00 3.20
2141 8009 0.029167 CACACAATTCGCACTGCACA 59.971 50.000 1.11 0.00 0.00 4.57
2180 8048 8.186821 GGAGATTGATTAAAACATTGGTCAGAG 58.813 37.037 0.00 0.00 0.00 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.080366 CATTCGTCCCGGTTCGTGA 60.080 57.895 13.60 6.24 0.00 4.35
1 2 2.098233 CCATTCGTCCCGGTTCGTG 61.098 63.158 13.60 7.12 0.00 4.35
2 3 2.263540 CCATTCGTCCCGGTTCGT 59.736 61.111 13.60 0.00 0.00 3.85
3 4 3.192922 GCCATTCGTCCCGGTTCG 61.193 66.667 0.00 4.79 0.00 3.95
4 5 2.822701 GGCCATTCGTCCCGGTTC 60.823 66.667 0.00 0.00 0.00 3.62
5 6 4.419921 GGGCCATTCGTCCCGGTT 62.420 66.667 4.39 0.00 32.00 4.44
9 10 0.530744 GAAAAAGGGCCATTCGTCCC 59.469 55.000 1.59 0.00 42.94 4.46
10 11 1.545841 AGAAAAAGGGCCATTCGTCC 58.454 50.000 1.59 0.00 0.00 4.79
11 12 3.344515 AGTAGAAAAAGGGCCATTCGTC 58.655 45.455 1.59 3.83 0.00 4.20
12 13 3.434940 AGTAGAAAAAGGGCCATTCGT 57.565 42.857 1.59 0.00 0.00 3.85
13 14 4.332819 CACTAGTAGAAAAAGGGCCATTCG 59.667 45.833 1.59 0.00 0.00 3.34
14 15 5.254115 ACACTAGTAGAAAAAGGGCCATTC 58.746 41.667 1.59 7.49 0.00 2.67
15 16 5.256806 ACACTAGTAGAAAAAGGGCCATT 57.743 39.130 6.18 0.00 0.00 3.16
16 17 4.929146 ACACTAGTAGAAAAAGGGCCAT 57.071 40.909 6.18 0.00 0.00 4.40
17 18 4.717279 AACACTAGTAGAAAAAGGGCCA 57.283 40.909 6.18 0.00 0.00 5.36
18 19 5.067954 TCAAACACTAGTAGAAAAAGGGCC 58.932 41.667 3.59 0.00 0.00 5.80
19 20 6.485648 TCTTCAAACACTAGTAGAAAAAGGGC 59.514 38.462 3.59 0.00 0.00 5.19
20 21 8.446599 TTCTTCAAACACTAGTAGAAAAAGGG 57.553 34.615 3.59 0.00 0.00 3.95
25 26 9.886132 AGACTTTTCTTCAAACACTAGTAGAAA 57.114 29.630 10.75 10.75 30.63 2.52
26 27 9.314321 CAGACTTTTCTTCAAACACTAGTAGAA 57.686 33.333 3.59 0.00 0.00 2.10
27 28 8.475639 ACAGACTTTTCTTCAAACACTAGTAGA 58.524 33.333 3.59 0.00 0.00 2.59
28 29 8.649973 ACAGACTTTTCTTCAAACACTAGTAG 57.350 34.615 0.00 0.00 0.00 2.57
29 30 7.709613 GGACAGACTTTTCTTCAAACACTAGTA 59.290 37.037 0.00 0.00 0.00 1.82
30 31 6.539103 GGACAGACTTTTCTTCAAACACTAGT 59.461 38.462 0.00 0.00 0.00 2.57
31 32 6.538742 TGGACAGACTTTTCTTCAAACACTAG 59.461 38.462 0.00 0.00 0.00 2.57
32 33 6.411376 TGGACAGACTTTTCTTCAAACACTA 58.589 36.000 0.00 0.00 0.00 2.74
33 34 5.253330 TGGACAGACTTTTCTTCAAACACT 58.747 37.500 0.00 0.00 0.00 3.55
34 35 5.560966 TGGACAGACTTTTCTTCAAACAC 57.439 39.130 0.00 0.00 0.00 3.32
35 36 6.773976 AATGGACAGACTTTTCTTCAAACA 57.226 33.333 0.00 0.00 0.00 2.83
36 37 9.750125 ATAAAATGGACAGACTTTTCTTCAAAC 57.250 29.630 0.00 0.00 0.00 2.93
38 39 9.965824 GAATAAAATGGACAGACTTTTCTTCAA 57.034 29.630 0.00 0.00 31.04 2.69
50 51 8.616076 GGTCTATCAAGTGAATAAAATGGACAG 58.384 37.037 0.00 0.00 0.00 3.51
51 52 8.106462 TGGTCTATCAAGTGAATAAAATGGACA 58.894 33.333 0.00 0.00 0.00 4.02
150 151 4.364415 TGCTCACAAACCACTAAACAAC 57.636 40.909 0.00 0.00 0.00 3.32
198 3564 6.110707 TCCTCGAATGTCATTTAACCCTAAC 58.889 40.000 0.00 0.00 0.00 2.34
202 3568 3.312697 GCTCCTCGAATGTCATTTAACCC 59.687 47.826 0.00 0.00 0.00 4.11
204 3570 3.312697 GGGCTCCTCGAATGTCATTTAAC 59.687 47.826 0.00 0.00 0.00 2.01
206 3572 2.771943 AGGGCTCCTCGAATGTCATTTA 59.228 45.455 0.00 0.00 0.00 1.40
207 3573 1.561542 AGGGCTCCTCGAATGTCATTT 59.438 47.619 0.00 0.00 0.00 2.32
226 3762 4.611355 CGGAGCTGATTTTTGTGTGTGTAG 60.611 45.833 0.00 0.00 0.00 2.74
233 3769 5.551760 ACTATTCGGAGCTGATTTTTGTG 57.448 39.130 0.00 0.00 0.00 3.33
234 3770 6.170506 TGTACTATTCGGAGCTGATTTTTGT 58.829 36.000 0.00 0.00 0.00 2.83
235 3771 6.662414 TGTACTATTCGGAGCTGATTTTTG 57.338 37.500 0.00 0.00 0.00 2.44
257 3793 9.891828 GGGCCTATGAAAAAGTTTTTAAAAATG 57.108 29.630 16.02 3.30 0.00 2.32
258 3794 9.634021 TGGGCCTATGAAAAAGTTTTTAAAAAT 57.366 25.926 16.02 8.02 0.00 1.82
259 3795 9.462606 TTGGGCCTATGAAAAAGTTTTTAAAAA 57.537 25.926 13.45 9.31 0.00 1.94
260 3796 9.462606 TTTGGGCCTATGAAAAAGTTTTTAAAA 57.537 25.926 13.45 0.00 0.00 1.52
264 3800 8.532186 AAATTTGGGCCTATGAAAAAGTTTTT 57.468 26.923 13.35 13.35 0.00 1.94
265 3801 8.412456 CAAAATTTGGGCCTATGAAAAAGTTTT 58.588 29.630 4.53 1.63 28.84 2.43
269 3805 7.509141 AACAAAATTTGGGCCTATGAAAAAG 57.491 32.000 10.71 0.00 34.12 2.27
270 3806 9.579932 AATAACAAAATTTGGGCCTATGAAAAA 57.420 25.926 10.71 0.00 34.12 1.94
273 3809 9.579932 AAAAATAACAAAATTTGGGCCTATGAA 57.420 25.926 10.71 0.00 34.12 2.57
275 3811 7.754475 GCAAAAATAACAAAATTTGGGCCTATG 59.246 33.333 10.71 0.00 34.25 2.23
304 3840 8.302438 GTGATGTTTGGAAATTCAGAAAGATCT 58.698 33.333 18.60 0.00 32.23 2.75
307 3843 6.323482 TGGTGATGTTTGGAAATTCAGAAAGA 59.677 34.615 0.00 0.00 0.00 2.52
310 3846 6.477053 TTGGTGATGTTTGGAAATTCAGAA 57.523 33.333 0.00 0.00 0.00 3.02
312 3848 7.733402 AATTTGGTGATGTTTGGAAATTCAG 57.267 32.000 0.00 0.00 0.00 3.02
329 3865 3.304794 GCAATGTGCATGCAAAATTTGGT 60.305 39.130 24.58 0.00 44.26 3.67
352 3888 1.091771 CACCCAAGATGCTCGCGAAT 61.092 55.000 11.33 0.35 0.00 3.34
354 3890 2.125552 CACCCAAGATGCTCGCGA 60.126 61.111 9.26 9.26 0.00 5.87
432 3971 0.032678 CGGGCTCATATGTTCTCGCT 59.967 55.000 1.90 0.00 0.00 4.93
436 3975 0.179045 GTGCCGGGCTCATATGTTCT 60.179 55.000 21.46 0.00 0.00 3.01
439 3978 1.920734 TTGGTGCCGGGCTCATATGT 61.921 55.000 21.46 0.00 0.00 2.29
450 3989 2.393764 GAGAACAACAATTTGGTGCCG 58.606 47.619 14.31 0.00 39.04 5.69
454 3993 3.214328 AGAGCGAGAACAACAATTTGGT 58.786 40.909 0.78 0.00 37.00 3.67
459 3998 3.748568 GGAAGAAGAGCGAGAACAACAAT 59.251 43.478 0.00 0.00 0.00 2.71
460 3999 3.131396 GGAAGAAGAGCGAGAACAACAA 58.869 45.455 0.00 0.00 0.00 2.83
461 4000 2.755650 GGAAGAAGAGCGAGAACAACA 58.244 47.619 0.00 0.00 0.00 3.33
462 4001 1.721926 CGGAAGAAGAGCGAGAACAAC 59.278 52.381 0.00 0.00 0.00 3.32
464 4003 0.388649 GCGGAAGAAGAGCGAGAACA 60.389 55.000 0.00 0.00 0.00 3.18
465 4004 0.109039 AGCGGAAGAAGAGCGAGAAC 60.109 55.000 0.00 0.00 35.78 3.01
466 4005 0.603569 AAGCGGAAGAAGAGCGAGAA 59.396 50.000 0.00 0.00 35.78 2.87
482 4021 7.375106 AGCTGCATGTGAATATAATAGAAGC 57.625 36.000 1.02 0.00 0.00 3.86
507 4046 9.571816 AAAATAAATTTTTGAGCCATGAAGGAA 57.428 25.926 0.00 0.00 36.68 3.36
563 4102 4.927267 ACACCCCATGTTCATCTCTTAA 57.073 40.909 0.00 0.00 38.98 1.85
578 4117 3.617284 CAACTACTTTCCCATACACCCC 58.383 50.000 0.00 0.00 0.00 4.95
619 4158 8.824781 CAGGAATGTAGTATCACTTTGAGAATG 58.175 37.037 0.00 0.00 0.00 2.67
659 4201 5.827666 ACTTGAAACCCACTTTAATCAACG 58.172 37.500 0.00 0.00 0.00 4.10
689 4231 4.650972 TTAATGCAACCACTCTTACCCT 57.349 40.909 0.00 0.00 0.00 4.34
691 4233 8.051901 ACTAAATTAATGCAACCACTCTTACC 57.948 34.615 0.00 0.00 0.00 2.85
721 4263 5.645497 TGGGTTTGTTTCTTTGTTTTGGATG 59.355 36.000 0.00 0.00 0.00 3.51
725 4267 6.305693 TGTTGGGTTTGTTTCTTTGTTTTG 57.694 33.333 0.00 0.00 0.00 2.44
726 4268 5.049060 GCTGTTGGGTTTGTTTCTTTGTTTT 60.049 36.000 0.00 0.00 0.00 2.43
747 4289 0.387622 CACCTCAAAATGCCACGCTG 60.388 55.000 0.00 0.00 0.00 5.18
749 4291 1.734117 GCACCTCAAAATGCCACGC 60.734 57.895 0.00 0.00 35.73 5.34
750 4292 1.442520 CGCACCTCAAAATGCCACG 60.443 57.895 0.00 0.00 38.69 4.94
752 4294 0.250684 TCTCGCACCTCAAAATGCCA 60.251 50.000 0.00 0.00 38.69 4.92
779 4638 1.816224 AGTGTCTTTTTGTGTGGCGTT 59.184 42.857 0.00 0.00 0.00 4.84
781 4640 2.097466 AGAAGTGTCTTTTTGTGTGGCG 59.903 45.455 0.00 0.00 0.00 5.69
810 4669 2.444766 AGATTAGATTGGAGGCTTGGGG 59.555 50.000 0.00 0.00 0.00 4.96
812 4671 6.777782 AGAATAGATTAGATTGGAGGCTTGG 58.222 40.000 0.00 0.00 0.00 3.61
819 4678 9.078990 TCGAAGCTAAGAATAGATTAGATTGGA 57.921 33.333 1.37 3.32 39.45 3.53
840 4702 6.306356 GTGTGGAATTGTCATTGAAATCGAAG 59.694 38.462 0.00 0.00 0.00 3.79
858 4720 0.618458 GGGAGTGGCTATGTGTGGAA 59.382 55.000 0.00 0.00 0.00 3.53
891 4754 3.066291 ACTTGGAACATTGGCGTGATA 57.934 42.857 0.00 0.00 39.30 2.15
932 4795 0.043485 GGAGGAGGAGGAGGGACTTT 59.957 60.000 0.00 0.00 41.55 2.66
1047 4910 4.006319 GGGAGAAGAATGTGACCTTCTTG 58.994 47.826 18.34 0.00 46.35 3.02
1056 4919 0.379669 GCATGCGGGAGAAGAATGTG 59.620 55.000 0.00 0.00 0.00 3.21
1057 4920 0.035152 TGCATGCGGGAGAAGAATGT 60.035 50.000 14.09 0.00 0.00 2.71
1076 4939 1.102978 GGAGGCAATGGCGTAAATGT 58.897 50.000 0.00 0.00 42.47 2.71
1078 4941 1.956477 GATGGAGGCAATGGCGTAAAT 59.044 47.619 0.00 0.00 42.47 1.40
1080 4943 0.546122 AGATGGAGGCAATGGCGTAA 59.454 50.000 0.00 0.00 42.47 3.18
1083 4946 1.895707 GGAGATGGAGGCAATGGCG 60.896 63.158 0.00 0.00 42.47 5.69
1087 4950 1.528824 CACCGGAGATGGAGGCAAT 59.471 57.895 9.46 0.00 0.00 3.56
1104 4967 1.631071 TAGGCATGCGGGAATCACCA 61.631 55.000 12.44 0.00 41.20 4.17
1106 4969 1.166531 GGTAGGCATGCGGGAATCAC 61.167 60.000 12.44 1.33 0.00 3.06
1107 4970 1.148273 GGTAGGCATGCGGGAATCA 59.852 57.895 12.44 0.00 0.00 2.57
1108 4971 1.600916 GGGTAGGCATGCGGGAATC 60.601 63.158 12.44 0.00 0.00 2.52
1110 4973 2.382770 ATGGGTAGGCATGCGGGAA 61.383 57.895 12.44 0.00 0.00 3.97
1128 4991 1.907807 GACTTGGGTGCCAATGCCA 60.908 57.895 0.00 0.00 43.07 4.92
1129 4992 2.973082 GACTTGGGTGCCAATGCC 59.027 61.111 0.00 0.00 43.07 4.40
1130 4993 1.971167 TCGACTTGGGTGCCAATGC 60.971 57.895 0.00 0.00 43.07 3.56
1131 4994 1.586154 GGTCGACTTGGGTGCCAATG 61.586 60.000 16.46 0.00 43.07 2.82
1132 4995 1.303317 GGTCGACTTGGGTGCCAAT 60.303 57.895 16.46 0.00 43.07 3.16
1133 4996 2.112297 GGTCGACTTGGGTGCCAA 59.888 61.111 16.46 0.00 41.69 4.52
1161 5024 1.935799 CATTCCATGTGGGGTTTGGA 58.064 50.000 0.00 0.00 37.76 3.53
1163 5026 0.249955 GGCATTCCATGTGGGGTTTG 59.750 55.000 0.00 0.00 37.22 2.93
1229 5092 1.807226 CGTAGCGACACATGGAGGA 59.193 57.895 0.00 0.00 0.00 3.71
1261 5124 1.375396 CGTCATGGTGGCCGAAGAA 60.375 57.895 0.00 0.00 0.00 2.52
1392 5255 6.040504 TGAACTTGTAGCTGAAGTAGAGAACA 59.959 38.462 12.04 0.00 33.20 3.18
1435 5298 0.390340 TTCTCTGTAGCGCTTGCAGG 60.390 55.000 29.00 22.33 42.66 4.85
1437 5300 0.033366 TGTTCTCTGTAGCGCTTGCA 59.967 50.000 18.68 14.84 42.66 4.08
1470 5333 2.761208 AGAGTCCCCAGAGTATTTGACG 59.239 50.000 0.00 0.00 0.00 4.35
1476 5339 0.266152 CCCCAGAGTCCCCAGAGTAT 59.734 60.000 0.00 0.00 0.00 2.12
1619 5530 3.320826 TGGCGCATACACATAGTACATCT 59.679 43.478 10.83 0.00 35.05 2.90
1620 5531 3.649073 TGGCGCATACACATAGTACATC 58.351 45.455 10.83 0.00 35.05 3.06
1626 5537 2.990642 TGCTGGCGCATACACATAG 58.009 52.632 10.83 0.00 42.25 2.23
1721 5632 4.648626 ATGCCATCATCCCGCCGG 62.649 66.667 0.00 0.00 0.00 6.13
1726 5637 1.174783 GAGCATCATGCCATCATCCC 58.825 55.000 5.84 0.00 46.52 3.85
1727 5638 0.803117 CGAGCATCATGCCATCATCC 59.197 55.000 5.84 0.00 46.52 3.51
1728 5639 0.803117 CCGAGCATCATGCCATCATC 59.197 55.000 5.84 0.00 46.52 2.92
1729 5640 0.109913 ACCGAGCATCATGCCATCAT 59.890 50.000 5.84 0.00 46.52 2.45
1730 5641 0.816421 CACCGAGCATCATGCCATCA 60.816 55.000 5.84 0.00 46.52 3.07
1731 5642 0.533531 TCACCGAGCATCATGCCATC 60.534 55.000 5.84 0.00 46.52 3.51
1732 5643 0.816825 GTCACCGAGCATCATGCCAT 60.817 55.000 5.84 0.00 46.52 4.40
1733 5644 1.450134 GTCACCGAGCATCATGCCA 60.450 57.895 5.84 0.00 46.52 4.92
1736 5647 1.012086 CCAAGTCACCGAGCATCATG 58.988 55.000 0.00 0.00 33.17 3.07
1772 5683 8.050316 AGATTTACATGGACATCCTCCTTAAT 57.950 34.615 0.16 0.00 40.26 1.40
1773 5684 7.348274 AGAGATTTACATGGACATCCTCCTTAA 59.652 37.037 0.16 0.00 40.26 1.85
1798 5763 6.904011 GCTCACTCATTTTCGATTCACATTAG 59.096 38.462 0.00 0.00 0.00 1.73
1884 5849 2.418368 TCCATCGGCTTAACTGCAAT 57.582 45.000 0.00 0.00 34.04 3.56
1885 5850 1.810151 GTTCCATCGGCTTAACTGCAA 59.190 47.619 0.00 0.00 34.04 4.08
1886 5851 1.448985 GTTCCATCGGCTTAACTGCA 58.551 50.000 0.00 0.00 34.04 4.41
1888 5853 1.737793 GTGGTTCCATCGGCTTAACTG 59.262 52.381 0.00 0.00 0.00 3.16
1889 5854 1.674817 CGTGGTTCCATCGGCTTAACT 60.675 52.381 0.00 0.00 0.00 2.24
1951 7647 4.787551 ACCTCAAATGTGTTGGTGTCTTA 58.212 39.130 3.19 0.00 33.60 2.10
1953 7649 3.297134 ACCTCAAATGTGTTGGTGTCT 57.703 42.857 3.19 0.00 33.60 3.41
1954 7650 3.380004 TGAACCTCAAATGTGTTGGTGTC 59.620 43.478 4.53 5.60 34.55 3.67
1955 7651 3.360867 TGAACCTCAAATGTGTTGGTGT 58.639 40.909 4.53 0.00 34.55 4.16
1956 7652 4.111916 GTTGAACCTCAAATGTGTTGGTG 58.888 43.478 4.53 0.00 38.22 4.17
1957 7653 3.132111 GGTTGAACCTCAAATGTGTTGGT 59.868 43.478 7.20 0.00 38.22 3.67
1958 7654 3.716601 GGTTGAACCTCAAATGTGTTGG 58.283 45.455 7.20 0.00 38.22 3.77
1971 7667 3.813724 GGTTGAGAGTGTAAGGTTGAACC 59.186 47.826 6.16 6.16 38.99 3.62
1972 7668 4.704965 AGGTTGAGAGTGTAAGGTTGAAC 58.295 43.478 0.00 0.00 0.00 3.18
1973 7669 5.367945 AAGGTTGAGAGTGTAAGGTTGAA 57.632 39.130 0.00 0.00 0.00 2.69
1974 7670 6.681729 ATAAGGTTGAGAGTGTAAGGTTGA 57.318 37.500 0.00 0.00 0.00 3.18
1975 7671 8.095169 AGTAATAAGGTTGAGAGTGTAAGGTTG 58.905 37.037 0.00 0.00 0.00 3.77
1976 7672 8.203681 AGTAATAAGGTTGAGAGTGTAAGGTT 57.796 34.615 0.00 0.00 0.00 3.50
1977 7673 7.793948 AGTAATAAGGTTGAGAGTGTAAGGT 57.206 36.000 0.00 0.00 0.00 3.50
1978 7674 8.311836 TGAAGTAATAAGGTTGAGAGTGTAAGG 58.688 37.037 0.00 0.00 0.00 2.69
1979 7675 9.706691 TTGAAGTAATAAGGTTGAGAGTGTAAG 57.293 33.333 0.00 0.00 0.00 2.34
1982 7678 8.974060 TTTTGAAGTAATAAGGTTGAGAGTGT 57.026 30.769 0.00 0.00 0.00 3.55
2009 7705 7.170393 AGAGGCAAACAGAGTTTTACTTTTT 57.830 32.000 0.00 0.00 0.00 1.94
2010 7706 6.775594 AGAGGCAAACAGAGTTTTACTTTT 57.224 33.333 0.00 0.00 0.00 2.27
2011 7707 7.875327 TTAGAGGCAAACAGAGTTTTACTTT 57.125 32.000 0.00 0.00 0.00 2.66
2012 7708 8.465273 AATTAGAGGCAAACAGAGTTTTACTT 57.535 30.769 0.00 0.00 0.00 2.24
2013 7709 8.352942 CAAATTAGAGGCAAACAGAGTTTTACT 58.647 33.333 0.00 0.00 0.00 2.24
2014 7710 7.595130 CCAAATTAGAGGCAAACAGAGTTTTAC 59.405 37.037 0.00 0.00 0.00 2.01
2015 7711 7.504238 TCCAAATTAGAGGCAAACAGAGTTTTA 59.496 33.333 0.00 0.00 0.00 1.52
2018 7714 5.385198 TCCAAATTAGAGGCAAACAGAGTT 58.615 37.500 0.00 0.00 0.00 3.01
2029 7725 6.331369 TGTTTTGCTCTTCCAAATTAGAGG 57.669 37.500 5.36 0.00 38.63 3.69
2072 7768 2.892852 TGTTGGAAGCAGGAATTCCTTG 59.107 45.455 24.93 19.36 46.09 3.61
2126 7908 1.891178 CTGATGTGCAGTGCGAATTG 58.109 50.000 11.20 0.83 39.85 2.32
2141 8009 2.766263 TCAATCTCCGTGCCTAACTGAT 59.234 45.455 0.00 0.00 0.00 2.90
2180 8048 8.613060 AATCAACATCCATGATCAGTATACAC 57.387 34.615 5.50 0.00 36.53 2.90
2425 8296 9.713713 TGTGTTAATTCAGTACATAGCAAGTTA 57.286 29.630 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.