Multiple sequence alignment - TraesCS4B01G327500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4B01G327500 | chr4B | 100.000 | 3187 | 0 | 0 | 1 | 3187 | 618346174 | 618349360 | 0.000000e+00 | 5886 |
1 | TraesCS4B01G327500 | chr4D | 90.948 | 2353 | 121 | 37 | 1 | 2273 | 485162425 | 485164765 | 0.000000e+00 | 3081 |
2 | TraesCS4B01G327500 | chr4D | 94.333 | 300 | 14 | 2 | 2386 | 2682 | 485165239 | 485165538 | 1.040000e-124 | 457 |
3 | TraesCS4B01G327500 | chr4D | 91.003 | 289 | 18 | 2 | 2903 | 3183 | 485165529 | 485165817 | 1.790000e-102 | 383 |
4 | TraesCS4B01G327500 | chr4D | 91.489 | 94 | 8 | 0 | 2297 | 2390 | 485165098 | 485165191 | 2.580000e-26 | 130 |
5 | TraesCS4B01G327500 | chr5A | 92.209 | 1476 | 83 | 13 | 793 | 2238 | 666203797 | 666205270 | 0.000000e+00 | 2060 |
6 | TraesCS4B01G327500 | chr5A | 92.252 | 413 | 22 | 5 | 2277 | 2682 | 666208820 | 666209229 | 7.670000e-161 | 577 |
7 | TraesCS4B01G327500 | chr5A | 85.307 | 456 | 23 | 23 | 30 | 474 | 666202876 | 666203298 | 6.320000e-117 | 431 |
8 | TraesCS4B01G327500 | chr5A | 88.515 | 357 | 18 | 8 | 462 | 795 | 666203324 | 666203680 | 8.230000e-111 | 411 |
9 | TraesCS4B01G327500 | chr5A | 90.972 | 288 | 24 | 2 | 2902 | 3187 | 666209219 | 666209506 | 1.390000e-103 | 387 |
10 | TraesCS4B01G327500 | chr6B | 99.554 | 224 | 1 | 0 | 2683 | 2906 | 686179085 | 686178862 | 2.960000e-110 | 409 |
11 | TraesCS4B01G327500 | chr2D | 95.067 | 223 | 9 | 2 | 2683 | 2904 | 526224763 | 526224542 | 1.820000e-92 | 350 |
12 | TraesCS4B01G327500 | chr2D | 74.832 | 298 | 47 | 18 | 1314 | 1606 | 517264483 | 517264209 | 3.360000e-20 | 110 |
13 | TraesCS4B01G327500 | chr2B | 94.595 | 222 | 10 | 2 | 2683 | 2903 | 361564040 | 361564260 | 3.040000e-90 | 342 |
14 | TraesCS4B01G327500 | chr2B | 75.085 | 293 | 47 | 17 | 1314 | 1602 | 609202086 | 609201816 | 2.600000e-21 | 113 |
15 | TraesCS4B01G327500 | chr5B | 94.595 | 222 | 9 | 3 | 2683 | 2903 | 248778954 | 248779173 | 1.090000e-89 | 340 |
16 | TraesCS4B01G327500 | chr5B | 94.196 | 224 | 11 | 2 | 2683 | 2905 | 694312340 | 694312562 | 1.090000e-89 | 340 |
17 | TraesCS4B01G327500 | chr5B | 93.805 | 226 | 12 | 2 | 2681 | 2905 | 239413970 | 239413746 | 3.940000e-89 | 339 |
18 | TraesCS4B01G327500 | chr5B | 93.750 | 224 | 11 | 2 | 2683 | 2903 | 355402640 | 355402863 | 1.830000e-87 | 333 |
19 | TraesCS4B01G327500 | chr1B | 94.118 | 221 | 12 | 1 | 2683 | 2903 | 17377742 | 17377523 | 5.090000e-88 | 335 |
20 | TraesCS4B01G327500 | chr1B | 86.538 | 156 | 20 | 1 | 1921 | 2076 | 394116969 | 394117123 | 1.520000e-38 | 171 |
21 | TraesCS4B01G327500 | chr1A | 92.952 | 227 | 14 | 2 | 2682 | 2906 | 530169968 | 530170194 | 2.370000e-86 | 329 |
22 | TraesCS4B01G327500 | chr1D | 86.875 | 160 | 20 | 1 | 1921 | 2080 | 293291859 | 293292017 | 9.080000e-41 | 178 |
23 | TraesCS4B01G327500 | chr6D | 90.179 | 112 | 11 | 0 | 1964 | 2075 | 7434250 | 7434139 | 2.560000e-31 | 147 |
24 | TraesCS4B01G327500 | chr2A | 75.170 | 294 | 45 | 18 | 1314 | 1602 | 661585610 | 661585340 | 2.600000e-21 | 113 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4B01G327500 | chr4B | 618346174 | 618349360 | 3186 | False | 5886.00 | 5886 | 100.00000 | 1 | 3187 | 1 | chr4B.!!$F1 | 3186 |
1 | TraesCS4B01G327500 | chr4D | 485162425 | 485165817 | 3392 | False | 1012.75 | 3081 | 91.94325 | 1 | 3183 | 4 | chr4D.!!$F1 | 3182 |
2 | TraesCS4B01G327500 | chr5A | 666202876 | 666209506 | 6630 | False | 773.20 | 2060 | 89.85100 | 30 | 3187 | 5 | chr5A.!!$F1 | 3157 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
834 | 1035 | 0.237761 | CAAGACTGCAAGCTCAGTGC | 59.762 | 55.0 | 12.47 | 7.35 | 46.4 | 4.4 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2738 | 6648 | 0.036022 | TGAATGCCACGTGTCATCCA | 59.964 | 50.0 | 13.12 | 2.86 | 0.0 | 3.41 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
148 | 153 | 4.021925 | GGTGGCGCCAGAGAAGGT | 62.022 | 66.667 | 33.73 | 0.00 | 37.17 | 3.50 |
151 | 156 | 1.609501 | TGGCGCCAGAGAAGGTAGT | 60.610 | 57.895 | 29.03 | 0.00 | 0.00 | 2.73 |
158 | 163 | 2.541466 | CCAGAGAAGGTAGTTGTCCCT | 58.459 | 52.381 | 0.00 | 0.00 | 0.00 | 4.20 |
165 | 170 | 0.963962 | GGTAGTTGTCCCTGTCGTCA | 59.036 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
172 | 177 | 4.065281 | CCCTGTCGTCACCCGTCC | 62.065 | 72.222 | 0.00 | 0.00 | 37.94 | 4.79 |
174 | 179 | 3.359523 | CTGTCGTCACCCGTCCGA | 61.360 | 66.667 | 0.00 | 0.00 | 37.94 | 4.55 |
330 | 342 | 2.670592 | GGCGTGGGGTAGCGTTTT | 60.671 | 61.111 | 0.00 | 0.00 | 0.00 | 2.43 |
474 | 490 | 0.389948 | CGCGCCACTCCTACTCTTTT | 60.390 | 55.000 | 0.00 | 0.00 | 0.00 | 2.27 |
475 | 491 | 1.809684 | GCGCCACTCCTACTCTTTTT | 58.190 | 50.000 | 0.00 | 0.00 | 0.00 | 1.94 |
569 | 636 | 2.579738 | GAGGGTCAAGCTCGTCCC | 59.420 | 66.667 | 0.00 | 0.00 | 40.16 | 4.46 |
600 | 672 | 1.655350 | GCACACAAGTCAACTGCGC | 60.655 | 57.895 | 0.00 | 0.00 | 0.00 | 6.09 |
777 | 859 | 3.152341 | ACTTTTGCCAGAGTCTTCCATG | 58.848 | 45.455 | 0.00 | 0.00 | 0.00 | 3.66 |
779 | 861 | 0.329261 | TTGCCAGAGTCTTCCATGGG | 59.671 | 55.000 | 13.02 | 0.00 | 33.23 | 4.00 |
795 | 877 | 4.787871 | GGAAGATGATCTGCCCGG | 57.212 | 61.111 | 8.39 | 0.00 | 36.09 | 5.73 |
796 | 878 | 1.072159 | GGAAGATGATCTGCCCGGG | 59.928 | 63.158 | 19.09 | 19.09 | 36.09 | 5.73 |
834 | 1035 | 0.237761 | CAAGACTGCAAGCTCAGTGC | 59.762 | 55.000 | 12.47 | 7.35 | 46.40 | 4.40 |
865 | 1073 | 4.024725 | TGAAAAAGTAATCCAACGTGTCCG | 60.025 | 41.667 | 0.00 | 0.00 | 40.83 | 4.79 |
921 | 1141 | 0.700269 | ATCCACTCATCCCCATGCCT | 60.700 | 55.000 | 0.00 | 0.00 | 0.00 | 4.75 |
927 | 1151 | 3.357952 | ATCCCCATGCCTTGCCCA | 61.358 | 61.111 | 0.00 | 0.00 | 0.00 | 5.36 |
976 | 1200 | 3.078837 | ACACCACCCTATAAAAACAGCG | 58.921 | 45.455 | 0.00 | 0.00 | 0.00 | 5.18 |
978 | 1202 | 2.290705 | ACCACCCTATAAAAACAGCGCT | 60.291 | 45.455 | 2.64 | 2.64 | 0.00 | 5.92 |
1028 | 1252 | 1.611851 | CCACCAGCTCCAGGAGACT | 60.612 | 63.158 | 21.89 | 13.65 | 46.44 | 3.24 |
1049 | 1273 | 2.513666 | ACGACGTACGCCGGGATA | 60.514 | 61.111 | 26.98 | 0.00 | 46.94 | 2.59 |
1173 | 1416 | 0.171455 | ACAAGAAGCTCTCCTACGCG | 59.829 | 55.000 | 3.53 | 3.53 | 0.00 | 6.01 |
1245 | 1488 | 4.147322 | CACGACGCCGCCAATGAC | 62.147 | 66.667 | 0.00 | 0.00 | 39.95 | 3.06 |
1248 | 1491 | 3.195698 | GACGCCGCCAATGACCTC | 61.196 | 66.667 | 0.00 | 0.00 | 0.00 | 3.85 |
1498 | 1747 | 1.071385 | CACTCCTGTCCTTGAAGCAGT | 59.929 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
1593 | 1842 | 3.872728 | TCGGACCGCGACATCTCG | 61.873 | 66.667 | 8.23 | 8.38 | 43.28 | 4.04 |
1962 | 2211 | 2.043852 | GAGGACGAGAGGAGGGCA | 60.044 | 66.667 | 0.00 | 0.00 | 0.00 | 5.36 |
2134 | 2390 | 9.594478 | TGATTGATTTGATTCCATTGATCTTTG | 57.406 | 29.630 | 0.00 | 0.00 | 0.00 | 2.77 |
2142 | 2398 | 7.765307 | TGATTCCATTGATCTTTGTTAGCTTC | 58.235 | 34.615 | 0.00 | 0.00 | 0.00 | 3.86 |
2213 | 2471 | 6.511767 | CGAGATTGTAATTAGGCGAAATGCTT | 60.512 | 38.462 | 0.00 | 0.00 | 45.43 | 3.91 |
2223 | 2525 | 9.869757 | AATTAGGCGAAATGCTTAGTAAATTTT | 57.130 | 25.926 | 0.00 | 0.00 | 45.43 | 1.82 |
2273 | 2575 | 5.066634 | TCGTCCAAATTTTGCAGTTGTTCTA | 59.933 | 36.000 | 3.50 | 0.00 | 0.00 | 2.10 |
2274 | 2576 | 5.173131 | CGTCCAAATTTTGCAGTTGTTCTAC | 59.827 | 40.000 | 3.50 | 0.00 | 0.00 | 2.59 |
2275 | 2577 | 5.173131 | GTCCAAATTTTGCAGTTGTTCTACG | 59.827 | 40.000 | 3.50 | 0.00 | 0.00 | 3.51 |
2282 | 6070 | 4.106029 | TGCAGTTGTTCTACGTAGATCC | 57.894 | 45.455 | 25.17 | 18.36 | 31.40 | 3.36 |
2318 | 6172 | 2.764010 | ACGTATACTCATCTTGGGTGCA | 59.236 | 45.455 | 0.56 | 0.00 | 30.82 | 4.57 |
2367 | 6221 | 6.484818 | TGCCATTACGGTAAAGTTTAGTTC | 57.515 | 37.500 | 4.47 | 0.00 | 36.97 | 3.01 |
2416 | 6324 | 4.163268 | TGTGTGGATAAGTTAGCTATGCCA | 59.837 | 41.667 | 0.00 | 0.00 | 0.00 | 4.92 |
2424 | 6332 | 1.815003 | GTTAGCTATGCCATGCCATCC | 59.185 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
2453 | 6361 | 1.269569 | TGCCGAGTGTAAGTGACTGTG | 60.270 | 52.381 | 0.00 | 0.00 | 0.00 | 3.66 |
2505 | 6413 | 9.668497 | AACTGTTTACTAGATATTTTCTGGTCC | 57.332 | 33.333 | 0.00 | 0.00 | 41.98 | 4.46 |
2531 | 6439 | 4.775253 | TGAATATCATAGGCCGACATGGTA | 59.225 | 41.667 | 13.09 | 11.32 | 41.21 | 3.25 |
2630 | 6538 | 8.170061 | TCCAGGATTATTCCAAGAAAGAAAAGA | 58.830 | 33.333 | 6.44 | 0.00 | 45.30 | 2.52 |
2670 | 6579 | 1.216990 | CCAGGCAGATTCCCTAACCT | 58.783 | 55.000 | 0.00 | 0.00 | 32.47 | 3.50 |
2682 | 6592 | 9.726438 | CAGATTCCCTAACCTACCTTTATATTG | 57.274 | 37.037 | 0.00 | 0.00 | 0.00 | 1.90 |
2683 | 6593 | 8.891501 | AGATTCCCTAACCTACCTTTATATTGG | 58.108 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
2684 | 6594 | 8.823810 | ATTCCCTAACCTACCTTTATATTGGA | 57.176 | 34.615 | 0.00 | 0.00 | 0.00 | 3.53 |
2685 | 6595 | 8.641498 | TTCCCTAACCTACCTTTATATTGGAA | 57.359 | 34.615 | 0.00 | 0.00 | 0.00 | 3.53 |
2686 | 6596 | 8.641498 | TCCCTAACCTACCTTTATATTGGAAA | 57.359 | 34.615 | 0.00 | 0.00 | 0.00 | 3.13 |
2687 | 6597 | 9.071334 | TCCCTAACCTACCTTTATATTGGAAAA | 57.929 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
2688 | 6598 | 9.350951 | CCCTAACCTACCTTTATATTGGAAAAG | 57.649 | 37.037 | 0.00 | 0.00 | 33.41 | 2.27 |
2704 | 6614 | 7.928307 | TTGGAAAAGAATTCTATGAGACCAG | 57.072 | 36.000 | 8.75 | 0.00 | 0.00 | 4.00 |
2705 | 6615 | 6.418101 | TGGAAAAGAATTCTATGAGACCAGG | 58.582 | 40.000 | 8.75 | 0.00 | 0.00 | 4.45 |
2706 | 6616 | 6.012508 | TGGAAAAGAATTCTATGAGACCAGGT | 60.013 | 38.462 | 8.75 | 0.00 | 0.00 | 4.00 |
2707 | 6617 | 6.540551 | GGAAAAGAATTCTATGAGACCAGGTC | 59.459 | 42.308 | 12.25 | 12.25 | 0.00 | 3.85 |
2708 | 6618 | 6.882768 | AAAGAATTCTATGAGACCAGGTCT | 57.117 | 37.500 | 23.18 | 23.18 | 46.42 | 3.85 |
2716 | 6626 | 3.560226 | AGACCAGGTCTCACAGGTT | 57.440 | 52.632 | 17.31 | 0.00 | 38.71 | 3.50 |
2717 | 6627 | 2.696526 | AGACCAGGTCTCACAGGTTA | 57.303 | 50.000 | 17.31 | 0.00 | 38.71 | 2.85 |
2718 | 6628 | 2.530701 | AGACCAGGTCTCACAGGTTAG | 58.469 | 52.381 | 17.31 | 0.00 | 38.71 | 2.34 |
2719 | 6629 | 0.977395 | ACCAGGTCTCACAGGTTAGC | 59.023 | 55.000 | 0.00 | 0.00 | 0.00 | 3.09 |
2720 | 6630 | 0.976641 | CCAGGTCTCACAGGTTAGCA | 59.023 | 55.000 | 0.00 | 0.00 | 0.00 | 3.49 |
2721 | 6631 | 1.066573 | CCAGGTCTCACAGGTTAGCAG | 60.067 | 57.143 | 0.00 | 0.00 | 0.00 | 4.24 |
2722 | 6632 | 1.066573 | CAGGTCTCACAGGTTAGCAGG | 60.067 | 57.143 | 0.00 | 0.00 | 0.00 | 4.85 |
2723 | 6633 | 0.977395 | GGTCTCACAGGTTAGCAGGT | 59.023 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2724 | 6634 | 1.338200 | GGTCTCACAGGTTAGCAGGTG | 60.338 | 57.143 | 0.88 | 0.88 | 0.00 | 4.00 |
2725 | 6635 | 1.618837 | GTCTCACAGGTTAGCAGGTGA | 59.381 | 52.381 | 8.23 | 8.23 | 37.89 | 4.02 |
2727 | 6637 | 2.009681 | TCACAGGTTAGCAGGTGAGA | 57.990 | 50.000 | 5.15 | 0.00 | 35.51 | 3.27 |
2728 | 6638 | 1.618837 | TCACAGGTTAGCAGGTGAGAC | 59.381 | 52.381 | 5.15 | 0.00 | 35.51 | 3.36 |
2729 | 6639 | 0.977395 | ACAGGTTAGCAGGTGAGACC | 59.023 | 55.000 | 0.00 | 0.00 | 38.99 | 3.85 |
2730 | 6640 | 0.250513 | CAGGTTAGCAGGTGAGACCC | 59.749 | 60.000 | 0.00 | 0.00 | 39.75 | 4.46 |
2731 | 6641 | 0.178903 | AGGTTAGCAGGTGAGACCCA | 60.179 | 55.000 | 0.00 | 0.00 | 39.75 | 4.51 |
2732 | 6642 | 0.912486 | GGTTAGCAGGTGAGACCCAT | 59.088 | 55.000 | 0.00 | 0.00 | 39.75 | 4.00 |
2733 | 6643 | 1.134371 | GGTTAGCAGGTGAGACCCATC | 60.134 | 57.143 | 0.00 | 0.00 | 39.75 | 3.51 |
2734 | 6644 | 1.134371 | GTTAGCAGGTGAGACCCATCC | 60.134 | 57.143 | 0.00 | 0.00 | 39.75 | 3.51 |
2735 | 6645 | 0.339859 | TAGCAGGTGAGACCCATCCT | 59.660 | 55.000 | 0.00 | 0.00 | 39.75 | 3.24 |
2736 | 6646 | 1.222936 | GCAGGTGAGACCCATCCTG | 59.777 | 63.158 | 5.79 | 5.79 | 39.75 | 3.86 |
2737 | 6647 | 1.267574 | GCAGGTGAGACCCATCCTGA | 61.268 | 60.000 | 13.26 | 0.00 | 42.00 | 3.86 |
2738 | 6648 | 1.504912 | CAGGTGAGACCCATCCTGAT | 58.495 | 55.000 | 4.28 | 0.00 | 42.00 | 2.90 |
2739 | 6649 | 1.140452 | CAGGTGAGACCCATCCTGATG | 59.860 | 57.143 | 4.28 | 0.00 | 42.00 | 3.07 |
2751 | 6661 | 0.536724 | TCCTGATGGATGACACGTGG | 59.463 | 55.000 | 21.57 | 1.66 | 37.46 | 4.94 |
2752 | 6662 | 1.091771 | CCTGATGGATGACACGTGGC | 61.092 | 60.000 | 21.57 | 19.24 | 34.57 | 5.01 |
2753 | 6663 | 0.391528 | CTGATGGATGACACGTGGCA | 60.392 | 55.000 | 29.28 | 29.28 | 37.54 | 4.92 |
2755 | 6665 | 1.339920 | TGATGGATGACACGTGGCATT | 60.340 | 47.619 | 36.07 | 22.11 | 45.42 | 3.56 |
2756 | 6666 | 1.331756 | GATGGATGACACGTGGCATTC | 59.668 | 52.381 | 36.07 | 34.16 | 45.42 | 2.67 |
2757 | 6667 | 0.036022 | TGGATGACACGTGGCATTCA | 59.964 | 50.000 | 36.64 | 36.64 | 46.54 | 2.57 |
2758 | 6668 | 0.447801 | GGATGACACGTGGCATTCAC | 59.552 | 55.000 | 36.07 | 24.74 | 45.42 | 3.18 |
2759 | 6669 | 1.155889 | GATGACACGTGGCATTCACA | 58.844 | 50.000 | 36.07 | 9.07 | 45.42 | 3.58 |
2760 | 6670 | 1.535028 | GATGACACGTGGCATTCACAA | 59.465 | 47.619 | 36.07 | 8.22 | 45.42 | 3.33 |
2761 | 6671 | 1.383523 | TGACACGTGGCATTCACAAA | 58.616 | 45.000 | 23.03 | 0.00 | 46.36 | 2.83 |
2762 | 6672 | 1.952990 | TGACACGTGGCATTCACAAAT | 59.047 | 42.857 | 23.03 | 0.00 | 46.36 | 2.32 |
2763 | 6673 | 2.031245 | TGACACGTGGCATTCACAAATC | 60.031 | 45.455 | 23.03 | 3.54 | 46.36 | 2.17 |
2764 | 6674 | 1.952990 | ACACGTGGCATTCACAAATCA | 59.047 | 42.857 | 21.57 | 0.00 | 46.36 | 2.57 |
2765 | 6675 | 2.287547 | ACACGTGGCATTCACAAATCAC | 60.288 | 45.455 | 21.57 | 0.00 | 46.36 | 3.06 |
2766 | 6676 | 1.952990 | ACGTGGCATTCACAAATCACA | 59.047 | 42.857 | 0.00 | 0.00 | 46.36 | 3.58 |
2767 | 6677 | 2.360483 | ACGTGGCATTCACAAATCACAA | 59.640 | 40.909 | 0.00 | 0.00 | 46.36 | 3.33 |
2768 | 6678 | 3.181482 | ACGTGGCATTCACAAATCACAAA | 60.181 | 39.130 | 0.00 | 0.00 | 46.36 | 2.83 |
2769 | 6679 | 3.426191 | CGTGGCATTCACAAATCACAAAG | 59.574 | 43.478 | 0.00 | 0.00 | 46.36 | 2.77 |
2770 | 6680 | 3.184986 | GTGGCATTCACAAATCACAAAGC | 59.815 | 43.478 | 0.00 | 0.00 | 45.39 | 3.51 |
2771 | 6681 | 3.181468 | TGGCATTCACAAATCACAAAGCA | 60.181 | 39.130 | 0.00 | 0.00 | 0.00 | 3.91 |
2772 | 6682 | 3.998341 | GGCATTCACAAATCACAAAGCAT | 59.002 | 39.130 | 0.00 | 0.00 | 0.00 | 3.79 |
2773 | 6683 | 4.453136 | GGCATTCACAAATCACAAAGCATT | 59.547 | 37.500 | 0.00 | 0.00 | 0.00 | 3.56 |
2774 | 6684 | 5.049267 | GGCATTCACAAATCACAAAGCATTT | 60.049 | 36.000 | 0.00 | 0.00 | 40.26 | 2.32 |
2775 | 6685 | 6.147492 | GGCATTCACAAATCACAAAGCATTTA | 59.853 | 34.615 | 0.00 | 0.00 | 35.03 | 1.40 |
2776 | 6686 | 7.011189 | GCATTCACAAATCACAAAGCATTTAC | 58.989 | 34.615 | 0.00 | 0.00 | 35.03 | 2.01 |
2777 | 6687 | 7.512297 | CATTCACAAATCACAAAGCATTTACC | 58.488 | 34.615 | 0.00 | 0.00 | 35.03 | 2.85 |
2778 | 6688 | 6.154203 | TCACAAATCACAAAGCATTTACCA | 57.846 | 33.333 | 0.00 | 0.00 | 35.03 | 3.25 |
2779 | 6689 | 5.982516 | TCACAAATCACAAAGCATTTACCAC | 59.017 | 36.000 | 0.00 | 0.00 | 35.03 | 4.16 |
2780 | 6690 | 5.752472 | CACAAATCACAAAGCATTTACCACA | 59.248 | 36.000 | 0.00 | 0.00 | 35.03 | 4.17 |
2781 | 6691 | 5.752955 | ACAAATCACAAAGCATTTACCACAC | 59.247 | 36.000 | 0.00 | 0.00 | 35.03 | 3.82 |
2782 | 6692 | 4.519540 | ATCACAAAGCATTTACCACACC | 57.480 | 40.909 | 0.00 | 0.00 | 35.03 | 4.16 |
2783 | 6693 | 2.625790 | TCACAAAGCATTTACCACACCC | 59.374 | 45.455 | 0.00 | 0.00 | 35.03 | 4.61 |
2784 | 6694 | 1.967779 | ACAAAGCATTTACCACACCCC | 59.032 | 47.619 | 0.00 | 0.00 | 35.03 | 4.95 |
2785 | 6695 | 1.275010 | CAAAGCATTTACCACACCCCC | 59.725 | 52.381 | 0.00 | 0.00 | 35.03 | 5.40 |
2786 | 6696 | 0.485099 | AAGCATTTACCACACCCCCA | 59.515 | 50.000 | 0.00 | 0.00 | 0.00 | 4.96 |
2787 | 6697 | 0.251608 | AGCATTTACCACACCCCCAC | 60.252 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
2788 | 6698 | 1.254975 | GCATTTACCACACCCCCACC | 61.255 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
2789 | 6699 | 0.407918 | CATTTACCACACCCCCACCT | 59.592 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2790 | 6700 | 0.407918 | ATTTACCACACCCCCACCTG | 59.592 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2791 | 6701 | 0.698198 | TTTACCACACCCCCACCTGA | 60.698 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2792 | 6702 | 0.698198 | TTACCACACCCCCACCTGAA | 60.698 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2793 | 6703 | 0.698198 | TACCACACCCCCACCTGAAA | 60.698 | 55.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2794 | 6704 | 1.368268 | ACCACACCCCCACCTGAAAT | 61.368 | 55.000 | 0.00 | 0.00 | 0.00 | 2.17 |
2795 | 6705 | 0.611896 | CCACACCCCCACCTGAAATC | 60.612 | 60.000 | 0.00 | 0.00 | 0.00 | 2.17 |
2796 | 6706 | 0.112218 | CACACCCCCACCTGAAATCA | 59.888 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2797 | 6707 | 0.405585 | ACACCCCCACCTGAAATCAG | 59.594 | 55.000 | 3.37 | 3.37 | 43.40 | 2.90 |
2807 | 6717 | 2.706339 | CTGAAATCAGGGGAGGACAG | 57.294 | 55.000 | 2.38 | 0.00 | 40.20 | 3.51 |
2808 | 6718 | 2.191400 | CTGAAATCAGGGGAGGACAGA | 58.809 | 52.381 | 2.38 | 0.00 | 40.20 | 3.41 |
2809 | 6719 | 2.776536 | CTGAAATCAGGGGAGGACAGAT | 59.223 | 50.000 | 2.38 | 0.00 | 40.20 | 2.90 |
2810 | 6720 | 3.192944 | TGAAATCAGGGGAGGACAGATT | 58.807 | 45.455 | 0.00 | 0.00 | 0.00 | 2.40 |
2811 | 6721 | 4.370776 | TGAAATCAGGGGAGGACAGATTA | 58.629 | 43.478 | 0.00 | 0.00 | 0.00 | 1.75 |
2812 | 6722 | 4.410228 | TGAAATCAGGGGAGGACAGATTAG | 59.590 | 45.833 | 0.00 | 0.00 | 0.00 | 1.73 |
2813 | 6723 | 4.286813 | AATCAGGGGAGGACAGATTAGA | 57.713 | 45.455 | 0.00 | 0.00 | 0.00 | 2.10 |
2814 | 6724 | 4.500389 | ATCAGGGGAGGACAGATTAGAT | 57.500 | 45.455 | 0.00 | 0.00 | 0.00 | 1.98 |
2815 | 6725 | 5.623551 | ATCAGGGGAGGACAGATTAGATA | 57.376 | 43.478 | 0.00 | 0.00 | 0.00 | 1.98 |
2816 | 6726 | 4.742012 | TCAGGGGAGGACAGATTAGATAC | 58.258 | 47.826 | 0.00 | 0.00 | 0.00 | 2.24 |
2817 | 6727 | 4.420552 | TCAGGGGAGGACAGATTAGATACT | 59.579 | 45.833 | 0.00 | 0.00 | 0.00 | 2.12 |
2818 | 6728 | 5.103043 | TCAGGGGAGGACAGATTAGATACTT | 60.103 | 44.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2819 | 6729 | 5.604650 | CAGGGGAGGACAGATTAGATACTTT | 59.395 | 44.000 | 0.00 | 0.00 | 0.00 | 2.66 |
2820 | 6730 | 5.604650 | AGGGGAGGACAGATTAGATACTTTG | 59.395 | 44.000 | 0.00 | 0.00 | 0.00 | 2.77 |
2821 | 6731 | 5.367060 | GGGGAGGACAGATTAGATACTTTGT | 59.633 | 44.000 | 0.00 | 0.00 | 0.00 | 2.83 |
2822 | 6732 | 6.284459 | GGGAGGACAGATTAGATACTTTGTG | 58.716 | 44.000 | 0.00 | 0.00 | 0.00 | 3.33 |
2823 | 6733 | 6.098409 | GGGAGGACAGATTAGATACTTTGTGA | 59.902 | 42.308 | 0.00 | 0.00 | 0.00 | 3.58 |
2824 | 6734 | 7.202047 | GGGAGGACAGATTAGATACTTTGTGAT | 60.202 | 40.741 | 0.00 | 0.00 | 0.00 | 3.06 |
2825 | 6735 | 8.207545 | GGAGGACAGATTAGATACTTTGTGATT | 58.792 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
2826 | 6736 | 9.606631 | GAGGACAGATTAGATACTTTGTGATTT | 57.393 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
2827 | 6737 | 9.388506 | AGGACAGATTAGATACTTTGTGATTTG | 57.611 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
2828 | 6738 | 9.167311 | GGACAGATTAGATACTTTGTGATTTGT | 57.833 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
2829 | 6739 | 9.979270 | GACAGATTAGATACTTTGTGATTTGTG | 57.021 | 33.333 | 0.00 | 0.00 | 0.00 | 3.33 |
2830 | 6740 | 9.725019 | ACAGATTAGATACTTTGTGATTTGTGA | 57.275 | 29.630 | 0.00 | 0.00 | 0.00 | 3.58 |
2834 | 6744 | 9.793252 | ATTAGATACTTTGTGATTTGTGAATGC | 57.207 | 29.630 | 0.00 | 0.00 | 0.00 | 3.56 |
2835 | 6745 | 6.624423 | AGATACTTTGTGATTTGTGAATGCC | 58.376 | 36.000 | 0.00 | 0.00 | 0.00 | 4.40 |
2836 | 6746 | 4.669206 | ACTTTGTGATTTGTGAATGCCA | 57.331 | 36.364 | 0.00 | 0.00 | 0.00 | 4.92 |
2837 | 6747 | 4.370917 | ACTTTGTGATTTGTGAATGCCAC | 58.629 | 39.130 | 0.00 | 0.00 | 45.88 | 5.01 |
2845 | 6755 | 3.975992 | GTGAATGCCACGTGTCATC | 57.024 | 52.632 | 13.12 | 7.23 | 35.86 | 2.92 |
2846 | 6756 | 0.447801 | GTGAATGCCACGTGTCATCC | 59.552 | 55.000 | 13.12 | 0.00 | 35.86 | 3.51 |
2847 | 6757 | 0.036022 | TGAATGCCACGTGTCATCCA | 59.964 | 50.000 | 13.12 | 2.86 | 0.00 | 3.41 |
2848 | 6758 | 1.339920 | TGAATGCCACGTGTCATCCAT | 60.340 | 47.619 | 13.12 | 0.00 | 0.00 | 3.41 |
2849 | 6759 | 1.331756 | GAATGCCACGTGTCATCCATC | 59.668 | 52.381 | 13.12 | 3.25 | 0.00 | 3.51 |
2850 | 6760 | 0.252761 | ATGCCACGTGTCATCCATCA | 59.747 | 50.000 | 15.65 | 0.00 | 0.00 | 3.07 |
2851 | 6761 | 0.391528 | TGCCACGTGTCATCCATCAG | 60.392 | 55.000 | 15.65 | 0.00 | 0.00 | 2.90 |
2852 | 6762 | 1.091771 | GCCACGTGTCATCCATCAGG | 61.092 | 60.000 | 15.65 | 0.00 | 0.00 | 3.86 |
2853 | 6763 | 0.462581 | CCACGTGTCATCCATCAGGG | 60.463 | 60.000 | 15.65 | 0.00 | 34.83 | 4.45 |
2854 | 6764 | 1.091771 | CACGTGTCATCCATCAGGGC | 61.092 | 60.000 | 7.58 | 0.00 | 36.21 | 5.19 |
2855 | 6765 | 1.884464 | CGTGTCATCCATCAGGGCG | 60.884 | 63.158 | 0.00 | 0.00 | 36.21 | 6.13 |
2856 | 6766 | 1.524621 | GTGTCATCCATCAGGGCGG | 60.525 | 63.158 | 0.00 | 0.00 | 36.21 | 6.13 |
2857 | 6767 | 2.111878 | GTCATCCATCAGGGCGGG | 59.888 | 66.667 | 0.00 | 0.00 | 36.21 | 6.13 |
2858 | 6768 | 2.366837 | TCATCCATCAGGGCGGGT | 60.367 | 61.111 | 0.00 | 0.00 | 36.21 | 5.28 |
2859 | 6769 | 2.111878 | CATCCATCAGGGCGGGTC | 59.888 | 66.667 | 0.00 | 0.00 | 36.21 | 4.46 |
2860 | 6770 | 2.040464 | ATCCATCAGGGCGGGTCT | 60.040 | 61.111 | 0.00 | 0.00 | 36.21 | 3.85 |
2861 | 6771 | 2.143419 | ATCCATCAGGGCGGGTCTC | 61.143 | 63.158 | 0.00 | 0.00 | 36.21 | 3.36 |
2862 | 6772 | 2.896677 | ATCCATCAGGGCGGGTCTCA | 62.897 | 60.000 | 0.00 | 0.00 | 36.21 | 3.27 |
2863 | 6773 | 2.187946 | CATCAGGGCGGGTCTCAC | 59.812 | 66.667 | 0.00 | 0.00 | 0.00 | 3.51 |
2864 | 6774 | 3.461773 | ATCAGGGCGGGTCTCACG | 61.462 | 66.667 | 0.00 | 0.00 | 0.00 | 4.35 |
2865 | 6775 | 4.988716 | TCAGGGCGGGTCTCACGT | 62.989 | 66.667 | 0.00 | 0.00 | 0.00 | 4.49 |
2866 | 6776 | 4.742201 | CAGGGCGGGTCTCACGTG | 62.742 | 72.222 | 9.94 | 9.94 | 0.00 | 4.49 |
2869 | 6779 | 4.681978 | GGCGGGTCTCACGTGCTT | 62.682 | 66.667 | 11.67 | 0.00 | 0.00 | 3.91 |
2870 | 6780 | 2.665185 | GCGGGTCTCACGTGCTTT | 60.665 | 61.111 | 11.67 | 0.00 | 0.00 | 3.51 |
2871 | 6781 | 1.373748 | GCGGGTCTCACGTGCTTTA | 60.374 | 57.895 | 11.67 | 0.00 | 0.00 | 1.85 |
2872 | 6782 | 0.739813 | GCGGGTCTCACGTGCTTTAT | 60.740 | 55.000 | 11.67 | 0.00 | 0.00 | 1.40 |
2873 | 6783 | 1.470285 | GCGGGTCTCACGTGCTTTATA | 60.470 | 52.381 | 11.67 | 0.00 | 0.00 | 0.98 |
2874 | 6784 | 2.802057 | GCGGGTCTCACGTGCTTTATAT | 60.802 | 50.000 | 11.67 | 0.00 | 0.00 | 0.86 |
2875 | 6785 | 2.794910 | CGGGTCTCACGTGCTTTATATG | 59.205 | 50.000 | 11.67 | 0.00 | 0.00 | 1.78 |
2876 | 6786 | 3.490249 | CGGGTCTCACGTGCTTTATATGA | 60.490 | 47.826 | 11.67 | 0.00 | 0.00 | 2.15 |
2877 | 6787 | 4.051922 | GGGTCTCACGTGCTTTATATGAG | 58.948 | 47.826 | 11.67 | 0.00 | 38.51 | 2.90 |
2878 | 6788 | 4.202121 | GGGTCTCACGTGCTTTATATGAGA | 60.202 | 45.833 | 11.67 | 1.89 | 42.63 | 3.27 |
2880 | 6790 | 4.933330 | TCTCACGTGCTTTATATGAGACC | 58.067 | 43.478 | 11.67 | 0.00 | 40.59 | 3.85 |
2881 | 6791 | 4.645136 | TCTCACGTGCTTTATATGAGACCT | 59.355 | 41.667 | 11.67 | 0.00 | 40.59 | 3.85 |
2882 | 6792 | 4.682787 | TCACGTGCTTTATATGAGACCTG | 58.317 | 43.478 | 11.67 | 0.00 | 0.00 | 4.00 |
2883 | 6793 | 3.804325 | CACGTGCTTTATATGAGACCTGG | 59.196 | 47.826 | 0.82 | 0.00 | 0.00 | 4.45 |
2884 | 6794 | 3.451178 | ACGTGCTTTATATGAGACCTGGT | 59.549 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
2885 | 6795 | 4.051922 | CGTGCTTTATATGAGACCTGGTC | 58.948 | 47.826 | 19.20 | 19.20 | 0.00 | 4.02 |
2886 | 6796 | 4.202161 | CGTGCTTTATATGAGACCTGGTCT | 60.202 | 45.833 | 28.70 | 28.70 | 46.42 | 3.85 |
2922 | 6832 | 5.806955 | TCCCTTTATATTTGGTGGAAGGT | 57.193 | 39.130 | 0.00 | 0.00 | 33.48 | 3.50 |
2935 | 6845 | 4.044065 | TGGTGGAAGGTGGAGATTTTACAT | 59.956 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
2953 | 6863 | 3.347216 | ACATTGCACTACATCCCTGAAC | 58.653 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
3051 | 6962 | 0.963355 | GGCCGTGGCTCCAACAATAA | 60.963 | 55.000 | 11.25 | 0.00 | 41.60 | 1.40 |
3071 | 6989 | 1.950472 | CGTGAATTGAAAGACCACGC | 58.050 | 50.000 | 0.00 | 0.00 | 42.83 | 5.34 |
3143 | 7061 | 0.388391 | CGCGGGCATGAAACATTTGT | 60.388 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
3171 | 7089 | 5.837438 | ACATATGATGAGAGAGTCATGTCCA | 59.163 | 40.000 | 10.38 | 0.00 | 46.64 | 4.02 |
3183 | 7101 | 5.946377 | AGAGTCATGTCCATTTTACCCTTTC | 59.054 | 40.000 | 0.00 | 0.00 | 0.00 | 2.62 |
3184 | 7102 | 5.892348 | AGTCATGTCCATTTTACCCTTTCT | 58.108 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
6 | 7 | 1.522355 | CGCTGGTGCTGTATCTGGG | 60.522 | 63.158 | 0.00 | 0.00 | 36.97 | 4.45 |
148 | 153 | 0.963962 | GGTGACGACAGGGACAACTA | 59.036 | 55.000 | 0.00 | 0.00 | 0.00 | 2.24 |
151 | 156 | 3.144285 | GGGTGACGACAGGGACAA | 58.856 | 61.111 | 0.00 | 0.00 | 0.00 | 3.18 |
172 | 177 | 1.934956 | CGCACTTCTCCGTCGATCG | 60.935 | 63.158 | 9.36 | 9.36 | 39.52 | 3.69 |
174 | 179 | 0.248661 | CATCGCACTTCTCCGTCGAT | 60.249 | 55.000 | 0.00 | 0.00 | 40.04 | 3.59 |
312 | 324 | 4.710167 | AAACGCTACCCCACGCCC | 62.710 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
314 | 326 | 2.559330 | CAAAACGCTACCCCACGC | 59.441 | 61.111 | 0.00 | 0.00 | 0.00 | 5.34 |
322 | 334 | 0.820074 | CACCACCCACCAAAACGCTA | 60.820 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
482 | 498 | 8.890718 | GGACAGAAACCAAAGAGTATAATAACC | 58.109 | 37.037 | 0.00 | 0.00 | 0.00 | 2.85 |
483 | 499 | 8.601476 | CGGACAGAAACCAAAGAGTATAATAAC | 58.399 | 37.037 | 0.00 | 0.00 | 0.00 | 1.89 |
485 | 501 | 7.762615 | CACGGACAGAAACCAAAGAGTATAATA | 59.237 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
486 | 502 | 6.594159 | CACGGACAGAAACCAAAGAGTATAAT | 59.406 | 38.462 | 0.00 | 0.00 | 0.00 | 1.28 |
489 | 505 | 4.039973 | TCACGGACAGAAACCAAAGAGTAT | 59.960 | 41.667 | 0.00 | 0.00 | 0.00 | 2.12 |
524 | 591 | 4.565166 | GTGGCAGTAACAAACTTTTTGACC | 59.435 | 41.667 | 5.67 | 0.00 | 35.76 | 4.02 |
577 | 649 | 1.160329 | AGTTGACTTGTGTGCGAGCC | 61.160 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
600 | 672 | 1.829349 | GAGCAGAGCAATGATCGCCG | 61.829 | 60.000 | 10.54 | 0.00 | 0.00 | 6.46 |
680 | 762 | 3.682292 | GACCATCCTGCCCGTGACC | 62.682 | 68.421 | 0.00 | 0.00 | 0.00 | 4.02 |
761 | 843 | 0.547471 | TCCCATGGAAGACTCTGGCA | 60.547 | 55.000 | 15.22 | 0.00 | 0.00 | 4.92 |
762 | 844 | 0.620556 | TTCCCATGGAAGACTCTGGC | 59.379 | 55.000 | 15.22 | 0.00 | 36.71 | 4.85 |
777 | 859 | 1.072159 | CCGGGCAGATCATCTTCCC | 59.928 | 63.158 | 12.30 | 12.30 | 45.08 | 3.97 |
779 | 861 | 1.599240 | GCCCGGGCAGATCATCTTC | 60.599 | 63.158 | 40.73 | 5.45 | 41.49 | 2.87 |
834 | 1035 | 6.636850 | CGTTGGATTACTTTTTCACTTTGGAG | 59.363 | 38.462 | 0.00 | 0.00 | 0.00 | 3.86 |
888 | 1096 | 3.383505 | TGAGTGGATACTGGATACGTTGG | 59.616 | 47.826 | 0.00 | 0.00 | 37.25 | 3.77 |
889 | 1097 | 4.649088 | TGAGTGGATACTGGATACGTTG | 57.351 | 45.455 | 0.00 | 0.00 | 37.25 | 4.10 |
890 | 1098 | 4.281182 | GGATGAGTGGATACTGGATACGTT | 59.719 | 45.833 | 0.00 | 0.00 | 37.25 | 3.99 |
891 | 1099 | 3.827302 | GGATGAGTGGATACTGGATACGT | 59.173 | 47.826 | 0.00 | 0.00 | 37.25 | 3.57 |
893 | 1101 | 3.515901 | GGGGATGAGTGGATACTGGATAC | 59.484 | 52.174 | 0.00 | 0.00 | 37.25 | 2.24 |
988 | 1212 | 2.203153 | GACCGTGGTGTGGCAAGT | 60.203 | 61.111 | 0.00 | 0.00 | 0.00 | 3.16 |
1023 | 1247 | 1.577117 | CGTACGTCGTCGCAGTCTC | 60.577 | 63.158 | 7.22 | 0.00 | 41.18 | 3.36 |
1049 | 1273 | 0.886563 | GCTTGCTGTTGCTGGAGATT | 59.113 | 50.000 | 0.00 | 0.00 | 40.48 | 2.40 |
1242 | 1485 | 2.283676 | GTCCACCCGAGGAGGTCA | 60.284 | 66.667 | 6.36 | 0.00 | 38.39 | 4.02 |
1286 | 1535 | 2.506217 | CACCGTCACCGATCCACG | 60.506 | 66.667 | 0.00 | 0.00 | 42.18 | 4.94 |
1479 | 1728 | 1.428869 | ACTGCTTCAAGGACAGGAGT | 58.571 | 50.000 | 0.00 | 0.00 | 36.91 | 3.85 |
1617 | 1866 | 1.122019 | AGCAAGAACGGTGGGAGAGT | 61.122 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 |
1752 | 2001 | 4.593864 | GATGCGGAGGAGGCGGAC | 62.594 | 72.222 | 0.00 | 0.00 | 0.00 | 4.79 |
2050 | 2299 | 2.031163 | GTTGAGCAGCGACACCCT | 59.969 | 61.111 | 0.00 | 0.00 | 0.00 | 4.34 |
2142 | 2398 | 8.871686 | TGTACATCATGTATACAAGCTACAAG | 57.128 | 34.615 | 10.14 | 0.00 | 35.05 | 3.16 |
2223 | 2525 | 6.568869 | ACGTTTCCAATCAATCAAGAACAAA | 58.431 | 32.000 | 0.00 | 0.00 | 0.00 | 2.83 |
2238 | 2540 | 2.312722 | TTTGGACGAGACGTTTCCAA | 57.687 | 45.000 | 14.43 | 14.43 | 41.37 | 3.53 |
2241 | 2543 | 3.420904 | GCAAAATTTGGACGAGACGTTTC | 59.579 | 43.478 | 7.89 | 0.00 | 41.37 | 2.78 |
2273 | 2575 | 4.885907 | TCTGATTTACCTTCGGATCTACGT | 59.114 | 41.667 | 0.00 | 0.00 | 34.94 | 3.57 |
2274 | 2576 | 5.434352 | TCTGATTTACCTTCGGATCTACG | 57.566 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
2275 | 2577 | 5.686397 | CGTTCTGATTTACCTTCGGATCTAC | 59.314 | 44.000 | 0.00 | 0.00 | 0.00 | 2.59 |
2282 | 6070 | 7.191551 | TGAGTATACGTTCTGATTTACCTTCG | 58.808 | 38.462 | 0.00 | 0.00 | 0.00 | 3.79 |
2297 | 6085 | 2.764010 | TGCACCCAAGATGAGTATACGT | 59.236 | 45.455 | 0.00 | 0.00 | 0.00 | 3.57 |
2367 | 6221 | 2.332063 | ATTGGCTTATGTCACCGGAG | 57.668 | 50.000 | 9.46 | 0.00 | 0.00 | 4.63 |
2416 | 6324 | 2.590821 | GGCAATAGTTGAGGATGGCAT | 58.409 | 47.619 | 0.00 | 0.00 | 36.65 | 4.40 |
2424 | 6332 | 4.327357 | CACTTACACTCGGCAATAGTTGAG | 59.673 | 45.833 | 0.00 | 0.00 | 34.65 | 3.02 |
2453 | 6361 | 2.159627 | CGGTGCAAGAGTCCAAATGTAC | 59.840 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2505 | 6413 | 4.271696 | TGTCGGCCTATGATATTCAAGG | 57.728 | 45.455 | 0.00 | 0.00 | 31.92 | 3.61 |
2531 | 6439 | 2.635915 | TCCAAACAGTTACGATCCCACT | 59.364 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
2630 | 6538 | 3.089284 | GGTGAGATTTTCCCGTCCATTT | 58.911 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
2682 | 6592 | 6.418946 | ACCTGGTCTCATAGAATTCTTTTCC | 58.581 | 40.000 | 14.36 | 8.65 | 0.00 | 3.13 |
2683 | 6593 | 7.334858 | AGACCTGGTCTCATAGAATTCTTTTC | 58.665 | 38.462 | 23.49 | 0.00 | 38.71 | 2.29 |
2684 | 6594 | 7.264294 | AGACCTGGTCTCATAGAATTCTTTT | 57.736 | 36.000 | 23.49 | 0.00 | 38.71 | 2.27 |
2685 | 6595 | 6.882768 | AGACCTGGTCTCATAGAATTCTTT | 57.117 | 37.500 | 23.49 | 2.41 | 38.71 | 2.52 |
2698 | 6608 | 2.530701 | CTAACCTGTGAGACCTGGTCT | 58.469 | 52.381 | 28.70 | 28.70 | 46.42 | 3.85 |
2699 | 6609 | 1.066787 | GCTAACCTGTGAGACCTGGTC | 60.067 | 57.143 | 19.20 | 19.20 | 35.82 | 4.02 |
2700 | 6610 | 0.977395 | GCTAACCTGTGAGACCTGGT | 59.023 | 55.000 | 0.00 | 0.00 | 38.19 | 4.00 |
2701 | 6611 | 0.976641 | TGCTAACCTGTGAGACCTGG | 59.023 | 55.000 | 0.00 | 0.00 | 0.00 | 4.45 |
2702 | 6612 | 1.066573 | CCTGCTAACCTGTGAGACCTG | 60.067 | 57.143 | 0.00 | 0.00 | 0.00 | 4.00 |
2703 | 6613 | 1.270907 | CCTGCTAACCTGTGAGACCT | 58.729 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2704 | 6614 | 0.977395 | ACCTGCTAACCTGTGAGACC | 59.023 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2705 | 6615 | 1.618837 | TCACCTGCTAACCTGTGAGAC | 59.381 | 52.381 | 0.00 | 0.00 | 33.09 | 3.36 |
2706 | 6616 | 2.009681 | TCACCTGCTAACCTGTGAGA | 57.990 | 50.000 | 0.00 | 0.00 | 33.09 | 3.27 |
2707 | 6617 | 2.376808 | CTCACCTGCTAACCTGTGAG | 57.623 | 55.000 | 4.34 | 4.34 | 45.96 | 3.51 |
2708 | 6618 | 1.618837 | GTCTCACCTGCTAACCTGTGA | 59.381 | 52.381 | 0.00 | 0.00 | 36.40 | 3.58 |
2709 | 6619 | 1.338200 | GGTCTCACCTGCTAACCTGTG | 60.338 | 57.143 | 0.00 | 0.00 | 34.73 | 3.66 |
2710 | 6620 | 0.977395 | GGTCTCACCTGCTAACCTGT | 59.023 | 55.000 | 0.00 | 0.00 | 34.73 | 4.00 |
2711 | 6621 | 0.250513 | GGGTCTCACCTGCTAACCTG | 59.749 | 60.000 | 0.00 | 0.00 | 38.64 | 4.00 |
2712 | 6622 | 0.178903 | TGGGTCTCACCTGCTAACCT | 60.179 | 55.000 | 0.00 | 0.00 | 38.64 | 3.50 |
2713 | 6623 | 0.912486 | ATGGGTCTCACCTGCTAACC | 59.088 | 55.000 | 0.00 | 0.00 | 38.64 | 2.85 |
2714 | 6624 | 1.134371 | GGATGGGTCTCACCTGCTAAC | 60.134 | 57.143 | 0.00 | 0.00 | 38.64 | 2.34 |
2715 | 6625 | 1.204146 | GGATGGGTCTCACCTGCTAA | 58.796 | 55.000 | 0.00 | 0.00 | 38.64 | 3.09 |
2716 | 6626 | 0.339859 | AGGATGGGTCTCACCTGCTA | 59.660 | 55.000 | 0.00 | 0.00 | 38.64 | 3.49 |
2717 | 6627 | 1.081833 | AGGATGGGTCTCACCTGCT | 59.918 | 57.895 | 0.00 | 0.00 | 38.64 | 4.24 |
2718 | 6628 | 1.222936 | CAGGATGGGTCTCACCTGC | 59.777 | 63.158 | 7.99 | 0.00 | 42.30 | 4.85 |
2720 | 6630 | 1.504912 | CATCAGGATGGGTCTCACCT | 58.495 | 55.000 | 1.25 | 0.00 | 38.64 | 4.00 |
2733 | 6643 | 1.091771 | GCCACGTGTCATCCATCAGG | 61.092 | 60.000 | 15.65 | 0.00 | 0.00 | 3.86 |
2734 | 6644 | 0.391528 | TGCCACGTGTCATCCATCAG | 60.392 | 55.000 | 15.65 | 0.00 | 0.00 | 2.90 |
2735 | 6645 | 0.252761 | ATGCCACGTGTCATCCATCA | 59.747 | 50.000 | 15.65 | 0.00 | 0.00 | 3.07 |
2736 | 6646 | 1.331756 | GAATGCCACGTGTCATCCATC | 59.668 | 52.381 | 13.12 | 3.25 | 0.00 | 3.51 |
2737 | 6647 | 1.339920 | TGAATGCCACGTGTCATCCAT | 60.340 | 47.619 | 13.12 | 0.00 | 0.00 | 3.41 |
2738 | 6648 | 0.036022 | TGAATGCCACGTGTCATCCA | 59.964 | 50.000 | 13.12 | 2.86 | 0.00 | 3.41 |
2739 | 6649 | 0.447801 | GTGAATGCCACGTGTCATCC | 59.552 | 55.000 | 13.12 | 0.00 | 35.86 | 3.51 |
2740 | 6650 | 3.975992 | GTGAATGCCACGTGTCATC | 57.024 | 52.632 | 13.12 | 7.23 | 35.86 | 2.92 |
2748 | 6658 | 3.184986 | GCTTTGTGATTTGTGAATGCCAC | 59.815 | 43.478 | 0.00 | 0.00 | 45.88 | 5.01 |
2749 | 6659 | 3.181468 | TGCTTTGTGATTTGTGAATGCCA | 60.181 | 39.130 | 0.00 | 0.00 | 0.00 | 4.92 |
2750 | 6660 | 3.391965 | TGCTTTGTGATTTGTGAATGCC | 58.608 | 40.909 | 0.00 | 0.00 | 0.00 | 4.40 |
2751 | 6661 | 5.600908 | AATGCTTTGTGATTTGTGAATGC | 57.399 | 34.783 | 0.00 | 0.00 | 0.00 | 3.56 |
2752 | 6662 | 7.171167 | TGGTAAATGCTTTGTGATTTGTGAATG | 59.829 | 33.333 | 0.00 | 0.00 | 0.00 | 2.67 |
2753 | 6663 | 7.171337 | GTGGTAAATGCTTTGTGATTTGTGAAT | 59.829 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
2754 | 6664 | 6.478344 | GTGGTAAATGCTTTGTGATTTGTGAA | 59.522 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
2755 | 6665 | 5.982516 | GTGGTAAATGCTTTGTGATTTGTGA | 59.017 | 36.000 | 0.00 | 0.00 | 0.00 | 3.58 |
2756 | 6666 | 5.752472 | TGTGGTAAATGCTTTGTGATTTGTG | 59.248 | 36.000 | 0.00 | 0.00 | 0.00 | 3.33 |
2757 | 6667 | 5.752955 | GTGTGGTAAATGCTTTGTGATTTGT | 59.247 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
2758 | 6668 | 5.177327 | GGTGTGGTAAATGCTTTGTGATTTG | 59.823 | 40.000 | 0.00 | 0.00 | 0.00 | 2.32 |
2759 | 6669 | 5.296748 | GGTGTGGTAAATGCTTTGTGATTT | 58.703 | 37.500 | 0.00 | 0.00 | 0.00 | 2.17 |
2760 | 6670 | 4.262420 | GGGTGTGGTAAATGCTTTGTGATT | 60.262 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
2761 | 6671 | 3.258123 | GGGTGTGGTAAATGCTTTGTGAT | 59.742 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
2762 | 6672 | 2.625790 | GGGTGTGGTAAATGCTTTGTGA | 59.374 | 45.455 | 0.00 | 0.00 | 0.00 | 3.58 |
2763 | 6673 | 2.288763 | GGGGTGTGGTAAATGCTTTGTG | 60.289 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
2764 | 6674 | 1.967779 | GGGGTGTGGTAAATGCTTTGT | 59.032 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
2765 | 6675 | 1.275010 | GGGGGTGTGGTAAATGCTTTG | 59.725 | 52.381 | 0.00 | 0.00 | 0.00 | 2.77 |
2766 | 6676 | 1.133009 | TGGGGGTGTGGTAAATGCTTT | 60.133 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
2767 | 6677 | 0.485099 | TGGGGGTGTGGTAAATGCTT | 59.515 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
2768 | 6678 | 0.251608 | GTGGGGGTGTGGTAAATGCT | 60.252 | 55.000 | 0.00 | 0.00 | 0.00 | 3.79 |
2769 | 6679 | 1.254975 | GGTGGGGGTGTGGTAAATGC | 61.255 | 60.000 | 0.00 | 0.00 | 0.00 | 3.56 |
2770 | 6680 | 0.407918 | AGGTGGGGGTGTGGTAAATG | 59.592 | 55.000 | 0.00 | 0.00 | 0.00 | 2.32 |
2771 | 6681 | 0.407918 | CAGGTGGGGGTGTGGTAAAT | 59.592 | 55.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2772 | 6682 | 0.698198 | TCAGGTGGGGGTGTGGTAAA | 60.698 | 55.000 | 0.00 | 0.00 | 0.00 | 2.01 |
2773 | 6683 | 0.698198 | TTCAGGTGGGGGTGTGGTAA | 60.698 | 55.000 | 0.00 | 0.00 | 0.00 | 2.85 |
2774 | 6684 | 0.698198 | TTTCAGGTGGGGGTGTGGTA | 60.698 | 55.000 | 0.00 | 0.00 | 0.00 | 3.25 |
2775 | 6685 | 1.368268 | ATTTCAGGTGGGGGTGTGGT | 61.368 | 55.000 | 0.00 | 0.00 | 0.00 | 4.16 |
2776 | 6686 | 0.611896 | GATTTCAGGTGGGGGTGTGG | 60.612 | 60.000 | 0.00 | 0.00 | 0.00 | 4.17 |
2777 | 6687 | 0.112218 | TGATTTCAGGTGGGGGTGTG | 59.888 | 55.000 | 0.00 | 0.00 | 0.00 | 3.82 |
2778 | 6688 | 0.405585 | CTGATTTCAGGTGGGGGTGT | 59.594 | 55.000 | 0.00 | 0.00 | 40.20 | 4.16 |
2779 | 6689 | 3.271250 | CTGATTTCAGGTGGGGGTG | 57.729 | 57.895 | 0.00 | 0.00 | 40.20 | 4.61 |
2788 | 6698 | 2.191400 | TCTGTCCTCCCCTGATTTCAG | 58.809 | 52.381 | 0.39 | 0.39 | 43.40 | 3.02 |
2789 | 6699 | 2.342406 | TCTGTCCTCCCCTGATTTCA | 57.658 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2790 | 6700 | 3.941704 | AATCTGTCCTCCCCTGATTTC | 57.058 | 47.619 | 0.00 | 0.00 | 29.46 | 2.17 |
2791 | 6701 | 4.635473 | TCTAATCTGTCCTCCCCTGATTT | 58.365 | 43.478 | 0.00 | 0.00 | 33.96 | 2.17 |
2792 | 6702 | 4.286813 | TCTAATCTGTCCTCCCCTGATT | 57.713 | 45.455 | 0.00 | 0.00 | 35.50 | 2.57 |
2793 | 6703 | 4.500389 | ATCTAATCTGTCCTCCCCTGAT | 57.500 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
2794 | 6704 | 4.420552 | AGTATCTAATCTGTCCTCCCCTGA | 59.579 | 45.833 | 0.00 | 0.00 | 0.00 | 3.86 |
2795 | 6705 | 4.746466 | AGTATCTAATCTGTCCTCCCCTG | 58.254 | 47.826 | 0.00 | 0.00 | 0.00 | 4.45 |
2796 | 6706 | 5.426325 | AAGTATCTAATCTGTCCTCCCCT | 57.574 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
2797 | 6707 | 5.367060 | ACAAAGTATCTAATCTGTCCTCCCC | 59.633 | 44.000 | 0.00 | 0.00 | 0.00 | 4.81 |
2798 | 6708 | 6.098409 | TCACAAAGTATCTAATCTGTCCTCCC | 59.902 | 42.308 | 0.00 | 0.00 | 0.00 | 4.30 |
2799 | 6709 | 7.113658 | TCACAAAGTATCTAATCTGTCCTCC | 57.886 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2800 | 6710 | 9.606631 | AAATCACAAAGTATCTAATCTGTCCTC | 57.393 | 33.333 | 0.00 | 0.00 | 0.00 | 3.71 |
2801 | 6711 | 9.388506 | CAAATCACAAAGTATCTAATCTGTCCT | 57.611 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
2802 | 6712 | 9.167311 | ACAAATCACAAAGTATCTAATCTGTCC | 57.833 | 33.333 | 0.00 | 0.00 | 0.00 | 4.02 |
2803 | 6713 | 9.979270 | CACAAATCACAAAGTATCTAATCTGTC | 57.021 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
2804 | 6714 | 9.725019 | TCACAAATCACAAAGTATCTAATCTGT | 57.275 | 29.630 | 0.00 | 0.00 | 0.00 | 3.41 |
2808 | 6718 | 9.793252 | GCATTCACAAATCACAAAGTATCTAAT | 57.207 | 29.630 | 0.00 | 0.00 | 0.00 | 1.73 |
2809 | 6719 | 8.243426 | GGCATTCACAAATCACAAAGTATCTAA | 58.757 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
2810 | 6720 | 7.392953 | TGGCATTCACAAATCACAAAGTATCTA | 59.607 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
2811 | 6721 | 6.209192 | TGGCATTCACAAATCACAAAGTATCT | 59.791 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
2812 | 6722 | 6.308766 | GTGGCATTCACAAATCACAAAGTATC | 59.691 | 38.462 | 0.00 | 0.00 | 45.39 | 2.24 |
2813 | 6723 | 6.158598 | GTGGCATTCACAAATCACAAAGTAT | 58.841 | 36.000 | 0.00 | 0.00 | 45.39 | 2.12 |
2814 | 6724 | 5.527951 | GTGGCATTCACAAATCACAAAGTA | 58.472 | 37.500 | 0.00 | 0.00 | 45.39 | 2.24 |
2815 | 6725 | 4.370917 | GTGGCATTCACAAATCACAAAGT | 58.629 | 39.130 | 0.00 | 0.00 | 45.39 | 2.66 |
2816 | 6726 | 3.426191 | CGTGGCATTCACAAATCACAAAG | 59.574 | 43.478 | 0.00 | 0.00 | 46.36 | 2.77 |
2817 | 6727 | 3.181482 | ACGTGGCATTCACAAATCACAAA | 60.181 | 39.130 | 0.00 | 0.00 | 46.36 | 2.83 |
2818 | 6728 | 2.360483 | ACGTGGCATTCACAAATCACAA | 59.640 | 40.909 | 0.00 | 0.00 | 46.36 | 3.33 |
2819 | 6729 | 1.952990 | ACGTGGCATTCACAAATCACA | 59.047 | 42.857 | 0.00 | 0.00 | 46.36 | 3.58 |
2820 | 6730 | 2.287547 | ACACGTGGCATTCACAAATCAC | 60.288 | 45.455 | 21.57 | 0.00 | 46.36 | 3.06 |
2821 | 6731 | 1.952990 | ACACGTGGCATTCACAAATCA | 59.047 | 42.857 | 21.57 | 0.00 | 46.36 | 2.57 |
2822 | 6732 | 2.031245 | TGACACGTGGCATTCACAAATC | 60.031 | 45.455 | 23.03 | 3.54 | 46.36 | 2.17 |
2823 | 6733 | 1.952990 | TGACACGTGGCATTCACAAAT | 59.047 | 42.857 | 23.03 | 0.00 | 46.36 | 2.32 |
2824 | 6734 | 1.383523 | TGACACGTGGCATTCACAAA | 58.616 | 45.000 | 23.03 | 0.00 | 46.36 | 2.83 |
2825 | 6735 | 1.535028 | GATGACACGTGGCATTCACAA | 59.465 | 47.619 | 36.07 | 8.22 | 45.42 | 3.33 |
2826 | 6736 | 1.155889 | GATGACACGTGGCATTCACA | 58.844 | 50.000 | 36.07 | 9.07 | 45.42 | 3.58 |
2827 | 6737 | 0.447801 | GGATGACACGTGGCATTCAC | 59.552 | 55.000 | 36.07 | 24.74 | 45.42 | 3.18 |
2828 | 6738 | 0.036022 | TGGATGACACGTGGCATTCA | 59.964 | 50.000 | 36.64 | 36.64 | 46.54 | 2.57 |
2829 | 6739 | 1.331756 | GATGGATGACACGTGGCATTC | 59.668 | 52.381 | 36.07 | 34.16 | 45.42 | 2.67 |
2830 | 6740 | 1.339920 | TGATGGATGACACGTGGCATT | 60.340 | 47.619 | 36.07 | 22.11 | 45.42 | 3.56 |
2832 | 6742 | 0.391528 | CTGATGGATGACACGTGGCA | 60.392 | 55.000 | 29.28 | 29.28 | 37.54 | 4.92 |
2833 | 6743 | 1.091771 | CCTGATGGATGACACGTGGC | 61.092 | 60.000 | 21.57 | 19.24 | 34.57 | 5.01 |
2834 | 6744 | 0.462581 | CCCTGATGGATGACACGTGG | 60.463 | 60.000 | 21.57 | 1.66 | 35.39 | 4.94 |
2835 | 6745 | 1.091771 | GCCCTGATGGATGACACGTG | 61.092 | 60.000 | 15.48 | 15.48 | 35.39 | 4.49 |
2836 | 6746 | 1.221840 | GCCCTGATGGATGACACGT | 59.778 | 57.895 | 0.00 | 0.00 | 35.39 | 4.49 |
2837 | 6747 | 1.884464 | CGCCCTGATGGATGACACG | 60.884 | 63.158 | 0.00 | 0.00 | 35.39 | 4.49 |
2838 | 6748 | 1.524621 | CCGCCCTGATGGATGACAC | 60.525 | 63.158 | 0.00 | 0.00 | 35.39 | 3.67 |
2839 | 6749 | 2.745308 | CCCGCCCTGATGGATGACA | 61.745 | 63.158 | 0.00 | 0.00 | 35.39 | 3.58 |
2840 | 6750 | 2.111878 | CCCGCCCTGATGGATGAC | 59.888 | 66.667 | 0.00 | 0.00 | 35.39 | 3.06 |
2841 | 6751 | 2.366837 | ACCCGCCCTGATGGATGA | 60.367 | 61.111 | 0.00 | 0.00 | 35.39 | 2.92 |
2842 | 6752 | 2.111878 | GACCCGCCCTGATGGATG | 59.888 | 66.667 | 0.00 | 0.00 | 35.39 | 3.51 |
2843 | 6753 | 2.040464 | AGACCCGCCCTGATGGAT | 60.040 | 61.111 | 0.00 | 0.00 | 35.39 | 3.41 |
2844 | 6754 | 2.764128 | GAGACCCGCCCTGATGGA | 60.764 | 66.667 | 0.00 | 0.00 | 35.39 | 3.41 |
2845 | 6755 | 3.083349 | TGAGACCCGCCCTGATGG | 61.083 | 66.667 | 0.00 | 0.00 | 37.09 | 3.51 |
2846 | 6756 | 2.187946 | GTGAGACCCGCCCTGATG | 59.812 | 66.667 | 0.00 | 0.00 | 0.00 | 3.07 |
2847 | 6757 | 3.461773 | CGTGAGACCCGCCCTGAT | 61.462 | 66.667 | 0.00 | 0.00 | 0.00 | 2.90 |
2848 | 6758 | 4.988716 | ACGTGAGACCCGCCCTGA | 62.989 | 66.667 | 0.00 | 0.00 | 0.00 | 3.86 |
2849 | 6759 | 4.742201 | CACGTGAGACCCGCCCTG | 62.742 | 72.222 | 10.90 | 0.00 | 0.00 | 4.45 |
2852 | 6762 | 2.775032 | TAAAGCACGTGAGACCCGCC | 62.775 | 60.000 | 22.23 | 0.00 | 0.00 | 6.13 |
2853 | 6763 | 0.739813 | ATAAAGCACGTGAGACCCGC | 60.740 | 55.000 | 22.23 | 0.76 | 0.00 | 6.13 |
2854 | 6764 | 2.572191 | TATAAAGCACGTGAGACCCG | 57.428 | 50.000 | 22.23 | 0.00 | 0.00 | 5.28 |
2855 | 6765 | 4.051922 | CTCATATAAAGCACGTGAGACCC | 58.948 | 47.826 | 22.23 | 0.00 | 38.81 | 4.46 |
2856 | 6766 | 4.933330 | TCTCATATAAAGCACGTGAGACC | 58.067 | 43.478 | 22.23 | 0.35 | 40.06 | 3.85 |
2858 | 6768 | 4.645136 | AGGTCTCATATAAAGCACGTGAGA | 59.355 | 41.667 | 22.23 | 6.73 | 41.99 | 3.27 |
2859 | 6769 | 4.742167 | CAGGTCTCATATAAAGCACGTGAG | 59.258 | 45.833 | 22.23 | 4.08 | 38.07 | 3.51 |
2860 | 6770 | 4.441495 | CCAGGTCTCATATAAAGCACGTGA | 60.441 | 45.833 | 22.23 | 0.00 | 0.00 | 4.35 |
2861 | 6771 | 3.804325 | CCAGGTCTCATATAAAGCACGTG | 59.196 | 47.826 | 12.28 | 12.28 | 0.00 | 4.49 |
2862 | 6772 | 3.451178 | ACCAGGTCTCATATAAAGCACGT | 59.549 | 43.478 | 0.00 | 0.00 | 0.00 | 4.49 |
2863 | 6773 | 4.051922 | GACCAGGTCTCATATAAAGCACG | 58.948 | 47.826 | 12.94 | 0.00 | 0.00 | 5.34 |
2864 | 6774 | 5.283457 | AGACCAGGTCTCATATAAAGCAC | 57.717 | 43.478 | 17.31 | 0.00 | 38.71 | 4.40 |
2896 | 6806 | 7.514473 | ACCTTCCACCAAATATAAAGGGAAAAA | 59.486 | 33.333 | 0.00 | 0.00 | 38.04 | 1.94 |
2897 | 6807 | 7.020009 | ACCTTCCACCAAATATAAAGGGAAAA | 58.980 | 34.615 | 0.00 | 0.00 | 38.04 | 2.29 |
2898 | 6808 | 6.439058 | CACCTTCCACCAAATATAAAGGGAAA | 59.561 | 38.462 | 0.00 | 0.00 | 38.04 | 3.13 |
2899 | 6809 | 5.955355 | CACCTTCCACCAAATATAAAGGGAA | 59.045 | 40.000 | 0.00 | 0.00 | 38.04 | 3.97 |
2900 | 6810 | 5.515106 | CACCTTCCACCAAATATAAAGGGA | 58.485 | 41.667 | 0.00 | 0.00 | 38.04 | 4.20 |
2901 | 6811 | 4.649218 | CCACCTTCCACCAAATATAAAGGG | 59.351 | 45.833 | 0.00 | 0.00 | 38.04 | 3.95 |
2902 | 6812 | 5.515106 | TCCACCTTCCACCAAATATAAAGG | 58.485 | 41.667 | 0.00 | 0.00 | 39.32 | 3.11 |
2903 | 6813 | 6.423182 | TCTCCACCTTCCACCAAATATAAAG | 58.577 | 40.000 | 0.00 | 0.00 | 0.00 | 1.85 |
2904 | 6814 | 6.395780 | TCTCCACCTTCCACCAAATATAAA | 57.604 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
2905 | 6815 | 6.590656 | ATCTCCACCTTCCACCAAATATAA | 57.409 | 37.500 | 0.00 | 0.00 | 0.00 | 0.98 |
2906 | 6816 | 6.590656 | AATCTCCACCTTCCACCAAATATA | 57.409 | 37.500 | 0.00 | 0.00 | 0.00 | 0.86 |
2907 | 6817 | 5.472301 | AATCTCCACCTTCCACCAAATAT | 57.528 | 39.130 | 0.00 | 0.00 | 0.00 | 1.28 |
2908 | 6818 | 4.946160 | AATCTCCACCTTCCACCAAATA | 57.054 | 40.909 | 0.00 | 0.00 | 0.00 | 1.40 |
2909 | 6819 | 3.833559 | AATCTCCACCTTCCACCAAAT | 57.166 | 42.857 | 0.00 | 0.00 | 0.00 | 2.32 |
2910 | 6820 | 3.611025 | AAATCTCCACCTTCCACCAAA | 57.389 | 42.857 | 0.00 | 0.00 | 0.00 | 3.28 |
2911 | 6821 | 3.611025 | AAAATCTCCACCTTCCACCAA | 57.389 | 42.857 | 0.00 | 0.00 | 0.00 | 3.67 |
2922 | 6832 | 6.318648 | GGATGTAGTGCAATGTAAAATCTCCA | 59.681 | 38.462 | 0.00 | 0.00 | 0.00 | 3.86 |
2935 | 6845 | 3.788227 | AAGTTCAGGGATGTAGTGCAA | 57.212 | 42.857 | 0.00 | 0.00 | 0.00 | 4.08 |
2972 | 6882 | 0.392595 | GGACGGGCGAAAGAGGAAAT | 60.393 | 55.000 | 0.00 | 0.00 | 0.00 | 2.17 |
3033 | 6944 | 0.170339 | GTTATTGTTGGAGCCACGGC | 59.830 | 55.000 | 0.00 | 0.00 | 42.33 | 5.68 |
3071 | 6989 | 0.460284 | CCCACGAGGAAATGAGACGG | 60.460 | 60.000 | 0.00 | 0.00 | 38.24 | 4.79 |
3143 | 7061 | 7.789026 | ACATGACTCTCTCATCATATGTTTCA | 58.211 | 34.615 | 0.00 | 0.00 | 37.53 | 2.69 |
3154 | 7072 | 6.352516 | GGTAAAATGGACATGACTCTCTCAT | 58.647 | 40.000 | 0.00 | 0.00 | 40.59 | 2.90 |
3157 | 7075 | 4.785376 | AGGGTAAAATGGACATGACTCTCT | 59.215 | 41.667 | 0.00 | 0.00 | 0.00 | 3.10 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.