Multiple sequence alignment - TraesCS4B01G326700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G326700 chr4B 100.000 3182 0 0 1 3182 617439450 617436269 0.000000e+00 5877.0
1 TraesCS4B01G326700 chr5A 94.633 1677 79 4 915 2591 665767644 665765979 0.000000e+00 2588.0
2 TraesCS4B01G326700 chr5A 91.892 111 8 1 815 925 665768592 665768483 1.530000e-33 154.0
3 TraesCS4B01G326700 chr4D 96.315 1547 47 6 807 2352 484726717 484725180 0.000000e+00 2532.0
4 TraesCS4B01G326700 chr4D 86.069 524 62 7 261 774 484727539 484727017 1.290000e-153 553.0
5 TraesCS4B01G326700 chr4D 90.909 77 7 0 1 77 484734766 484734690 1.560000e-18 104.0
6 TraesCS4B01G326700 chr3A 92.061 592 42 3 2591 3182 658300266 658299680 0.000000e+00 828.0
7 TraesCS4B01G326700 chr3A 78.378 185 32 7 2410 2591 694532457 694532636 2.590000e-21 113.0
8 TraesCS4B01G326700 chr3D 89.527 592 49 5 2592 3182 349899821 349900400 0.000000e+00 737.0
9 TraesCS4B01G326700 chr1D 88.735 577 49 5 2609 3182 9386889 9387452 0.000000e+00 691.0
10 TraesCS4B01G326700 chr6B 85.185 594 62 10 2592 3182 130500670 130501240 1.270000e-163 586.0
11 TraesCS4B01G326700 chr7B 85.017 594 52 10 2592 3182 745108783 745108224 1.280000e-158 569.0
12 TraesCS4B01G326700 chr2A 86.826 501 62 4 2592 3090 70150801 70151299 9.970000e-155 556.0
13 TraesCS4B01G326700 chr2A 80.412 97 13 4 2363 2459 596382990 596382900 5.700000e-08 69.4
14 TraesCS4B01G326700 chr1A 86.310 504 66 3 2589 3090 65787759 65788261 2.160000e-151 545.0
15 TraesCS4B01G326700 chr1A 87.143 70 8 1 2407 2476 479785853 479785921 9.460000e-11 78.7
16 TraesCS4B01G326700 chr7A 85.882 510 65 5 2587 3090 70184580 70185088 1.300000e-148 536.0
17 TraesCS4B01G326700 chr7D 85.972 499 66 4 2591 3089 18093036 18092542 6.040000e-147 531.0
18 TraesCS4B01G326700 chr6D 84.381 525 54 12 2589 3109 450667394 450667894 1.030000e-134 490.0
19 TraesCS4B01G326700 chr6D 88.889 45 4 1 2544 2587 63734907 63734951 2.000000e-03 54.7
20 TraesCS4B01G326700 chr3B 89.080 348 35 2 2587 2931 823321312 823320965 2.270000e-116 429.0
21 TraesCS4B01G326700 chr2B 86.458 96 6 6 2403 2496 544039181 544039091 7.260000e-17 99.0
22 TraesCS4B01G326700 chr2B 86.458 96 6 6 2403 2496 544470634 544470544 7.260000e-17 99.0
23 TraesCS4B01G326700 chr1B 95.238 42 2 0 2545 2586 540362033 540361992 2.050000e-07 67.6
24 TraesCS4B01G326700 chr5D 83.607 61 6 4 2409 2469 530435102 530435046 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G326700 chr4B 617436269 617439450 3181 True 5877.0 5877 100.0000 1 3182 1 chr4B.!!$R1 3181
1 TraesCS4B01G326700 chr5A 665765979 665768592 2613 True 1371.0 2588 93.2625 815 2591 2 chr5A.!!$R1 1776
2 TraesCS4B01G326700 chr4D 484725180 484727539 2359 True 1542.5 2532 91.1920 261 2352 2 chr4D.!!$R2 2091
3 TraesCS4B01G326700 chr3A 658299680 658300266 586 True 828.0 828 92.0610 2591 3182 1 chr3A.!!$R1 591
4 TraesCS4B01G326700 chr3D 349899821 349900400 579 False 737.0 737 89.5270 2592 3182 1 chr3D.!!$F1 590
5 TraesCS4B01G326700 chr1D 9386889 9387452 563 False 691.0 691 88.7350 2609 3182 1 chr1D.!!$F1 573
6 TraesCS4B01G326700 chr6B 130500670 130501240 570 False 586.0 586 85.1850 2592 3182 1 chr6B.!!$F1 590
7 TraesCS4B01G326700 chr7B 745108224 745108783 559 True 569.0 569 85.0170 2592 3182 1 chr7B.!!$R1 590
8 TraesCS4B01G326700 chr1A 65787759 65788261 502 False 545.0 545 86.3100 2589 3090 1 chr1A.!!$F1 501
9 TraesCS4B01G326700 chr7A 70184580 70185088 508 False 536.0 536 85.8820 2587 3090 1 chr7A.!!$F1 503
10 TraesCS4B01G326700 chr6D 450667394 450667894 500 False 490.0 490 84.3810 2589 3109 1 chr6D.!!$F2 520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
179 180 0.028637 GCATCGCCTCTTTAGCAAGC 59.971 55.0 0.0 0.0 0.00 4.01 F
263 264 0.109643 TGCTGCAATGACGAATGCAC 60.110 50.0 0.0 0.0 46.87 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2103 3229 1.446966 GAACTCCTGCACGAGCTCC 60.447 63.158 8.47 0.0 42.74 4.70 R
2213 3339 0.450482 CATCGACACGACAAAACCGC 60.450 55.000 0.00 0.0 39.18 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.516227 TCTCAGTCCATCTCGTCCTT 57.484 50.000 0.00 0.00 0.00 3.36
20 21 2.370349 TCTCAGTCCATCTCGTCCTTC 58.630 52.381 0.00 0.00 0.00 3.46
21 22 1.407258 CTCAGTCCATCTCGTCCTTCC 59.593 57.143 0.00 0.00 0.00 3.46
22 23 0.461961 CAGTCCATCTCGTCCTTCCC 59.538 60.000 0.00 0.00 0.00 3.97
23 24 0.041238 AGTCCATCTCGTCCTTCCCA 59.959 55.000 0.00 0.00 0.00 4.37
24 25 0.902531 GTCCATCTCGTCCTTCCCAA 59.097 55.000 0.00 0.00 0.00 4.12
25 26 0.902531 TCCATCTCGTCCTTCCCAAC 59.097 55.000 0.00 0.00 0.00 3.77
26 27 0.613260 CCATCTCGTCCTTCCCAACA 59.387 55.000 0.00 0.00 0.00 3.33
27 28 1.406069 CCATCTCGTCCTTCCCAACAG 60.406 57.143 0.00 0.00 0.00 3.16
28 29 1.550524 CATCTCGTCCTTCCCAACAGA 59.449 52.381 0.00 0.00 0.00 3.41
29 30 1.938585 TCTCGTCCTTCCCAACAGAT 58.061 50.000 0.00 0.00 0.00 2.90
30 31 1.550524 TCTCGTCCTTCCCAACAGATG 59.449 52.381 0.00 0.00 0.00 2.90
31 32 1.276421 CTCGTCCTTCCCAACAGATGT 59.724 52.381 0.00 0.00 0.00 3.06
32 33 1.697432 TCGTCCTTCCCAACAGATGTT 59.303 47.619 0.00 0.00 39.12 2.71
33 34 2.901192 TCGTCCTTCCCAACAGATGTTA 59.099 45.455 0.00 0.00 36.32 2.41
34 35 3.517901 TCGTCCTTCCCAACAGATGTTAT 59.482 43.478 0.00 0.00 36.32 1.89
35 36 3.623060 CGTCCTTCCCAACAGATGTTATG 59.377 47.826 0.00 0.00 36.32 1.90
36 37 4.622933 CGTCCTTCCCAACAGATGTTATGA 60.623 45.833 0.00 0.00 36.32 2.15
37 38 4.878397 GTCCTTCCCAACAGATGTTATGAG 59.122 45.833 0.00 0.00 36.32 2.90
38 39 3.629398 CCTTCCCAACAGATGTTATGAGC 59.371 47.826 0.00 0.00 36.32 4.26
39 40 4.521146 CTTCCCAACAGATGTTATGAGCT 58.479 43.478 0.00 0.00 36.32 4.09
40 41 4.142609 TCCCAACAGATGTTATGAGCTC 57.857 45.455 6.82 6.82 36.32 4.09
41 42 3.519107 TCCCAACAGATGTTATGAGCTCA 59.481 43.478 20.79 20.79 36.32 4.26
42 43 3.624861 CCCAACAGATGTTATGAGCTCAC 59.375 47.826 20.97 7.27 36.32 3.51
43 44 3.624861 CCAACAGATGTTATGAGCTCACC 59.375 47.826 20.97 10.69 36.32 4.02
44 45 4.256110 CAACAGATGTTATGAGCTCACCA 58.744 43.478 20.97 16.24 36.32 4.17
45 46 3.866651 ACAGATGTTATGAGCTCACCAC 58.133 45.455 20.97 18.47 0.00 4.16
46 47 3.201290 CAGATGTTATGAGCTCACCACC 58.799 50.000 20.97 7.36 0.00 4.61
47 48 2.840038 AGATGTTATGAGCTCACCACCA 59.160 45.455 20.97 13.64 0.00 4.17
48 49 2.472695 TGTTATGAGCTCACCACCAC 57.527 50.000 20.97 11.59 0.00 4.16
49 50 1.696884 TGTTATGAGCTCACCACCACA 59.303 47.619 20.97 14.03 0.00 4.17
50 51 2.076863 GTTATGAGCTCACCACCACAC 58.923 52.381 20.97 4.38 0.00 3.82
51 52 1.347062 TATGAGCTCACCACCACACA 58.653 50.000 20.97 0.00 0.00 3.72
52 53 0.250467 ATGAGCTCACCACCACACAC 60.250 55.000 20.97 0.00 0.00 3.82
53 54 1.598130 GAGCTCACCACCACACACC 60.598 63.158 9.40 0.00 0.00 4.16
54 55 2.191908 GCTCACCACCACACACCA 59.808 61.111 0.00 0.00 0.00 4.17
55 56 2.186826 GCTCACCACCACACACCAC 61.187 63.158 0.00 0.00 0.00 4.16
56 57 1.223211 CTCACCACCACACACCACA 59.777 57.895 0.00 0.00 0.00 4.17
57 58 0.179020 CTCACCACCACACACCACAT 60.179 55.000 0.00 0.00 0.00 3.21
58 59 0.257328 TCACCACCACACACCACATT 59.743 50.000 0.00 0.00 0.00 2.71
59 60 0.385029 CACCACCACACACCACATTG 59.615 55.000 0.00 0.00 0.00 2.82
60 61 0.754957 ACCACCACACACCACATTGG 60.755 55.000 0.00 0.00 45.02 3.16
61 62 1.462731 CCACCACACACCACATTGGG 61.463 60.000 0.00 0.00 43.37 4.12
68 69 3.569873 CACCACATTGGGGGACTAC 57.430 57.895 10.34 0.00 43.37 2.73
69 70 0.034477 CACCACATTGGGGGACTACC 60.034 60.000 10.34 0.00 43.37 3.18
70 71 1.223487 CCACATTGGGGGACTACCG 59.777 63.158 0.00 0.00 41.60 4.02
71 72 1.268992 CCACATTGGGGGACTACCGA 61.269 60.000 0.00 0.00 41.60 4.69
72 73 0.837272 CACATTGGGGGACTACCGAT 59.163 55.000 0.00 0.00 41.60 4.18
73 74 3.706055 CATTGGGGGACTACCGATG 57.294 57.895 0.00 0.00 41.99 3.84
74 75 0.535102 CATTGGGGGACTACCGATGC 60.535 60.000 0.00 0.00 41.61 3.91
75 76 0.986019 ATTGGGGGACTACCGATGCA 60.986 55.000 0.00 0.00 41.60 3.96
76 77 1.622607 TTGGGGGACTACCGATGCAG 61.623 60.000 0.00 0.00 41.60 4.41
77 78 2.109181 GGGGACTACCGATGCAGC 59.891 66.667 0.00 0.00 41.60 5.25
78 79 2.731571 GGGGACTACCGATGCAGCA 61.732 63.158 1.53 0.00 41.60 4.41
79 80 1.521681 GGGACTACCGATGCAGCAC 60.522 63.158 1.53 0.00 36.97 4.40
80 81 1.521681 GGACTACCGATGCAGCACC 60.522 63.158 1.53 0.00 0.00 5.01
81 82 1.521681 GACTACCGATGCAGCACCC 60.522 63.158 1.53 0.00 0.00 4.61
82 83 2.238847 GACTACCGATGCAGCACCCA 62.239 60.000 1.53 0.00 0.00 4.51
83 84 1.815421 CTACCGATGCAGCACCCAC 60.815 63.158 1.53 0.00 0.00 4.61
84 85 2.244117 CTACCGATGCAGCACCCACT 62.244 60.000 1.53 0.00 0.00 4.00
85 86 0.973496 TACCGATGCAGCACCCACTA 60.973 55.000 1.53 0.00 0.00 2.74
86 87 1.815421 CCGATGCAGCACCCACTAC 60.815 63.158 1.53 0.00 0.00 2.73
87 88 2.167219 CGATGCAGCACCCACTACG 61.167 63.158 1.53 0.00 0.00 3.51
88 89 1.079127 GATGCAGCACCCACTACGT 60.079 57.895 0.00 0.00 0.00 3.57
89 90 0.673644 GATGCAGCACCCACTACGTT 60.674 55.000 0.00 0.00 0.00 3.99
90 91 0.955428 ATGCAGCACCCACTACGTTG 60.955 55.000 0.00 0.00 0.00 4.10
91 92 2.966309 GCAGCACCCACTACGTTGC 61.966 63.158 0.00 0.00 0.00 4.17
92 93 2.032071 AGCACCCACTACGTTGCC 59.968 61.111 4.11 0.00 0.00 4.52
93 94 2.281208 GCACCCACTACGTTGCCA 60.281 61.111 0.00 0.00 0.00 4.92
94 95 2.613506 GCACCCACTACGTTGCCAC 61.614 63.158 0.00 0.00 0.00 5.01
95 96 1.227704 CACCCACTACGTTGCCACA 60.228 57.895 0.00 0.00 0.00 4.17
96 97 1.070786 ACCCACTACGTTGCCACAG 59.929 57.895 0.00 0.00 0.00 3.66
97 98 1.070786 CCCACTACGTTGCCACAGT 59.929 57.895 0.00 0.00 0.00 3.55
98 99 0.319083 CCCACTACGTTGCCACAGTA 59.681 55.000 0.00 0.00 0.00 2.74
99 100 1.671850 CCCACTACGTTGCCACAGTAG 60.672 57.143 14.11 14.11 42.41 2.57
100 101 1.271379 CCACTACGTTGCCACAGTAGA 59.729 52.381 19.28 0.00 39.98 2.59
101 102 2.094182 CCACTACGTTGCCACAGTAGAT 60.094 50.000 19.28 7.51 39.98 1.98
102 103 3.129813 CCACTACGTTGCCACAGTAGATA 59.870 47.826 19.28 0.00 39.98 1.98
103 104 4.103357 CACTACGTTGCCACAGTAGATAC 58.897 47.826 19.28 0.00 39.98 2.24
104 105 3.760151 ACTACGTTGCCACAGTAGATACA 59.240 43.478 19.28 0.00 39.98 2.29
105 106 2.955614 ACGTTGCCACAGTAGATACAC 58.044 47.619 0.00 0.00 0.00 2.90
106 107 2.297880 ACGTTGCCACAGTAGATACACA 59.702 45.455 0.00 0.00 0.00 3.72
107 108 2.666508 CGTTGCCACAGTAGATACACAC 59.333 50.000 0.00 0.00 0.00 3.82
108 109 3.659786 GTTGCCACAGTAGATACACACA 58.340 45.455 0.00 0.00 0.00 3.72
109 110 4.062293 GTTGCCACAGTAGATACACACAA 58.938 43.478 0.00 0.00 0.00 3.33
110 111 3.659786 TGCCACAGTAGATACACACAAC 58.340 45.455 0.00 0.00 0.00 3.32
111 112 2.666508 GCCACAGTAGATACACACAACG 59.333 50.000 0.00 0.00 0.00 4.10
112 113 3.613193 GCCACAGTAGATACACACAACGA 60.613 47.826 0.00 0.00 0.00 3.85
113 114 4.744570 CCACAGTAGATACACACAACGAT 58.255 43.478 0.00 0.00 0.00 3.73
114 115 4.798907 CCACAGTAGATACACACAACGATC 59.201 45.833 0.00 0.00 0.00 3.69
115 116 4.798907 CACAGTAGATACACACAACGATCC 59.201 45.833 0.00 0.00 0.00 3.36
116 117 4.461431 ACAGTAGATACACACAACGATCCA 59.539 41.667 0.00 0.00 0.00 3.41
117 118 5.127194 ACAGTAGATACACACAACGATCCAT 59.873 40.000 0.00 0.00 0.00 3.41
118 119 6.042777 CAGTAGATACACACAACGATCCATT 58.957 40.000 0.00 0.00 0.00 3.16
119 120 6.019559 CAGTAGATACACACAACGATCCATTG 60.020 42.308 0.00 3.38 0.00 2.82
120 121 3.623060 AGATACACACAACGATCCATTGC 59.377 43.478 4.62 0.00 0.00 3.56
121 122 1.896220 ACACACAACGATCCATTGCT 58.104 45.000 4.62 0.00 0.00 3.91
122 123 1.536766 ACACACAACGATCCATTGCTG 59.463 47.619 4.62 5.36 0.00 4.41
123 124 1.536766 CACACAACGATCCATTGCTGT 59.463 47.619 4.62 5.84 0.00 4.40
124 125 2.741517 CACACAACGATCCATTGCTGTA 59.258 45.455 4.62 0.00 0.00 2.74
125 126 3.188254 CACACAACGATCCATTGCTGTAA 59.812 43.478 4.62 0.00 0.00 2.41
126 127 3.818210 ACACAACGATCCATTGCTGTAAA 59.182 39.130 4.62 0.00 0.00 2.01
127 128 4.083324 ACACAACGATCCATTGCTGTAAAG 60.083 41.667 4.62 0.00 0.00 1.85
128 129 3.119849 ACAACGATCCATTGCTGTAAAGC 60.120 43.478 0.00 0.00 0.00 3.51
129 130 2.710377 ACGATCCATTGCTGTAAAGCA 58.290 42.857 2.56 2.56 43.81 3.91
130 131 3.282021 ACGATCCATTGCTGTAAAGCAT 58.718 40.909 8.81 0.00 44.94 3.79
131 132 3.065786 ACGATCCATTGCTGTAAAGCATG 59.934 43.478 8.81 9.08 44.94 4.06
132 133 2.945447 TCCATTGCTGTAAAGCATGC 57.055 45.000 8.81 10.51 44.94 4.06
133 134 1.477700 TCCATTGCTGTAAAGCATGCC 59.522 47.619 15.66 0.00 44.94 4.40
134 135 1.552226 CATTGCTGTAAAGCATGCCG 58.448 50.000 15.66 0.00 44.94 5.69
135 136 1.135315 CATTGCTGTAAAGCATGCCGT 60.135 47.619 15.66 4.84 44.94 5.68
136 137 0.521291 TTGCTGTAAAGCATGCCGTC 59.479 50.000 15.66 3.43 44.94 4.79
137 138 0.605050 TGCTGTAAAGCATGCCGTCA 60.605 50.000 15.66 8.09 40.23 4.35
138 139 0.734889 GCTGTAAAGCATGCCGTCAT 59.265 50.000 15.66 0.00 34.41 3.06
139 140 1.133025 GCTGTAAAGCATGCCGTCATT 59.867 47.619 15.66 0.00 34.41 2.57
140 141 2.789208 CTGTAAAGCATGCCGTCATTG 58.211 47.619 15.66 0.00 0.00 2.82
141 142 1.135431 TGTAAAGCATGCCGTCATTGC 60.135 47.619 15.66 6.50 0.00 3.56
142 143 1.135431 GTAAAGCATGCCGTCATTGCA 60.135 47.619 15.66 0.00 43.97 4.08
143 144 0.388907 AAAGCATGCCGTCATTGCAC 60.389 50.000 15.66 0.00 42.38 4.57
144 145 1.246056 AAGCATGCCGTCATTGCACT 61.246 50.000 15.66 0.00 42.38 4.40
145 146 1.515519 GCATGCCGTCATTGCACTG 60.516 57.895 6.36 0.00 42.38 3.66
146 147 1.515519 CATGCCGTCATTGCACTGC 60.516 57.895 0.00 0.00 42.38 4.40
147 148 1.972752 ATGCCGTCATTGCACTGCA 60.973 52.632 0.00 0.00 42.38 4.41
148 149 1.317431 ATGCCGTCATTGCACTGCAT 61.317 50.000 4.10 0.00 42.38 3.96
149 150 1.213537 GCCGTCATTGCACTGCATT 59.786 52.632 4.10 0.00 38.76 3.56
150 151 0.451383 GCCGTCATTGCACTGCATTA 59.549 50.000 4.10 0.00 38.76 1.90
151 152 1.795162 GCCGTCATTGCACTGCATTAC 60.795 52.381 4.10 3.01 38.76 1.89
152 153 1.739466 CCGTCATTGCACTGCATTACT 59.261 47.619 4.10 0.00 38.76 2.24
153 154 2.935849 CCGTCATTGCACTGCATTACTA 59.064 45.455 4.10 0.00 38.76 1.82
154 155 3.561310 CCGTCATTGCACTGCATTACTAT 59.439 43.478 4.10 0.00 38.76 2.12
155 156 4.035558 CCGTCATTGCACTGCATTACTATT 59.964 41.667 4.10 0.00 38.76 1.73
156 157 4.965762 CGTCATTGCACTGCATTACTATTG 59.034 41.667 4.10 0.00 38.76 1.90
157 158 4.736793 GTCATTGCACTGCATTACTATTGC 59.263 41.667 4.10 0.00 38.76 3.56
165 166 2.549329 TGCATTACTATTGCAGGCATCG 59.451 45.455 0.00 0.00 44.73 3.84
166 167 2.666619 GCATTACTATTGCAGGCATCGC 60.667 50.000 0.00 0.00 39.90 4.58
176 177 4.540153 GGCATCGCCTCTTTAGCA 57.460 55.556 0.00 0.00 46.69 3.49
177 178 2.780595 GGCATCGCCTCTTTAGCAA 58.219 52.632 0.00 0.00 46.69 3.91
178 179 0.659957 GGCATCGCCTCTTTAGCAAG 59.340 55.000 0.00 0.00 46.69 4.01
179 180 0.028637 GCATCGCCTCTTTAGCAAGC 59.971 55.000 0.00 0.00 0.00 4.01
180 181 1.661341 CATCGCCTCTTTAGCAAGCT 58.339 50.000 0.00 0.00 0.00 3.74
181 182 2.826428 CATCGCCTCTTTAGCAAGCTA 58.174 47.619 0.00 0.00 0.00 3.32
182 183 2.586258 TCGCCTCTTTAGCAAGCTAG 57.414 50.000 1.68 0.00 0.00 3.42
183 184 0.933796 CGCCTCTTTAGCAAGCTAGC 59.066 55.000 6.62 6.62 0.00 3.42
184 185 1.740380 CGCCTCTTTAGCAAGCTAGCA 60.740 52.381 18.83 0.00 36.85 3.49
185 186 2.359900 GCCTCTTTAGCAAGCTAGCAA 58.640 47.619 18.83 0.00 36.85 3.91
186 187 2.096657 GCCTCTTTAGCAAGCTAGCAAC 59.903 50.000 18.83 5.47 36.85 4.17
187 188 3.338249 CCTCTTTAGCAAGCTAGCAACA 58.662 45.455 18.83 0.00 36.85 3.33
188 189 3.373439 CCTCTTTAGCAAGCTAGCAACAG 59.627 47.826 18.83 4.43 36.85 3.16
189 190 3.338249 TCTTTAGCAAGCTAGCAACAGG 58.662 45.455 18.83 2.13 36.85 4.00
190 191 2.859165 TTAGCAAGCTAGCAACAGGT 57.141 45.000 18.83 11.10 36.85 4.00
191 192 2.099141 TAGCAAGCTAGCAACAGGTG 57.901 50.000 18.83 5.90 36.85 4.00
192 193 0.607489 AGCAAGCTAGCAACAGGTGG 60.607 55.000 18.83 0.00 36.85 4.61
193 194 1.878775 CAAGCTAGCAACAGGTGGC 59.121 57.895 18.83 0.00 37.49 5.01
194 195 1.672356 AAGCTAGCAACAGGTGGCG 60.672 57.895 18.83 0.00 41.38 5.69
195 196 3.804193 GCTAGCAACAGGTGGCGC 61.804 66.667 10.63 0.00 34.54 6.53
196 197 2.358615 CTAGCAACAGGTGGCGCA 60.359 61.111 10.83 0.00 34.54 6.09
197 198 1.965930 CTAGCAACAGGTGGCGCAA 60.966 57.895 10.83 0.00 34.54 4.85
198 199 1.915614 CTAGCAACAGGTGGCGCAAG 61.916 60.000 10.83 0.00 43.44 4.01
199 200 4.347453 GCAACAGGTGGCGCAAGG 62.347 66.667 10.83 0.00 38.28 3.61
211 212 3.064324 GCAAGGCTCGCCACCATT 61.064 61.111 11.02 0.00 38.92 3.16
212 213 3.056313 GCAAGGCTCGCCACCATTC 62.056 63.158 11.02 0.00 38.92 2.67
213 214 1.675310 CAAGGCTCGCCACCATTCA 60.675 57.895 11.02 0.00 38.92 2.57
214 215 1.074775 AAGGCTCGCCACCATTCAA 59.925 52.632 11.02 0.00 38.92 2.69
215 216 0.962356 AAGGCTCGCCACCATTCAAG 60.962 55.000 11.02 0.00 38.92 3.02
216 217 2.409870 GGCTCGCCACCATTCAAGG 61.410 63.158 2.41 0.00 35.81 3.61
217 218 1.377202 GCTCGCCACCATTCAAGGA 60.377 57.895 0.00 0.00 0.00 3.36
218 219 1.648467 GCTCGCCACCATTCAAGGAC 61.648 60.000 0.00 0.00 0.00 3.85
219 220 1.361668 CTCGCCACCATTCAAGGACG 61.362 60.000 0.00 0.00 0.00 4.79
220 221 1.671054 CGCCACCATTCAAGGACGT 60.671 57.895 0.00 0.00 0.00 4.34
221 222 1.234615 CGCCACCATTCAAGGACGTT 61.235 55.000 0.00 0.00 0.00 3.99
222 223 0.240945 GCCACCATTCAAGGACGTTG 59.759 55.000 1.35 1.35 37.52 4.10
223 224 1.890876 CCACCATTCAAGGACGTTGA 58.109 50.000 6.48 6.48 43.82 3.18
224 225 2.436417 CCACCATTCAAGGACGTTGAT 58.564 47.619 11.13 0.32 44.89 2.57
225 226 2.162208 CCACCATTCAAGGACGTTGATG 59.838 50.000 11.13 10.85 44.89 3.07
226 227 1.812571 ACCATTCAAGGACGTTGATGC 59.187 47.619 11.13 0.00 44.89 3.91
227 228 2.086869 CCATTCAAGGACGTTGATGCT 58.913 47.619 11.13 0.00 44.89 3.79
228 229 2.159476 CCATTCAAGGACGTTGATGCTG 60.159 50.000 11.13 9.18 44.89 4.41
229 230 0.874390 TTCAAGGACGTTGATGCTGC 59.126 50.000 11.13 0.00 44.89 5.25
230 231 0.250252 TCAAGGACGTTGATGCTGCA 60.250 50.000 4.13 4.13 40.45 4.41
231 232 0.806868 CAAGGACGTTGATGCTGCAT 59.193 50.000 16.20 16.20 38.60 3.96
232 233 2.009051 CAAGGACGTTGATGCTGCATA 58.991 47.619 16.23 0.00 38.60 3.14
233 234 2.401583 AGGACGTTGATGCTGCATAA 57.598 45.000 16.23 5.10 0.00 1.90
234 235 2.009774 AGGACGTTGATGCTGCATAAC 58.990 47.619 16.23 17.03 0.00 1.89
235 236 1.737236 GGACGTTGATGCTGCATAACA 59.263 47.619 16.23 7.54 0.00 2.41
236 237 7.861595 CAAGGACGTTGATGCTGCATAACAG 62.862 48.000 16.23 15.78 43.37 3.16
247 248 3.801698 CTGCATAACAGGTGTCTATGCT 58.198 45.455 23.03 0.00 43.19 3.79
248 249 3.534554 TGCATAACAGGTGTCTATGCTG 58.465 45.455 23.03 0.00 40.89 4.41
249 250 2.289002 GCATAACAGGTGTCTATGCTGC 59.711 50.000 19.30 0.00 39.31 5.25
250 251 3.534554 CATAACAGGTGTCTATGCTGCA 58.465 45.455 4.13 4.13 0.00 4.41
251 252 2.566833 AACAGGTGTCTATGCTGCAA 57.433 45.000 6.36 0.00 0.00 4.08
252 253 2.795231 ACAGGTGTCTATGCTGCAAT 57.205 45.000 6.36 0.00 0.00 3.56
253 254 2.362736 ACAGGTGTCTATGCTGCAATG 58.637 47.619 6.36 2.39 0.00 2.82
254 255 2.026915 ACAGGTGTCTATGCTGCAATGA 60.027 45.455 6.36 5.07 0.00 2.57
255 256 2.353889 CAGGTGTCTATGCTGCAATGAC 59.646 50.000 22.69 22.69 0.00 3.06
256 257 1.328680 GGTGTCTATGCTGCAATGACG 59.671 52.381 23.33 7.10 0.00 4.35
257 258 2.270923 GTGTCTATGCTGCAATGACGA 58.729 47.619 23.33 14.80 0.00 4.20
258 259 2.672874 GTGTCTATGCTGCAATGACGAA 59.327 45.455 23.33 11.56 0.00 3.85
259 260 3.310774 GTGTCTATGCTGCAATGACGAAT 59.689 43.478 23.33 4.19 0.00 3.34
260 261 3.310501 TGTCTATGCTGCAATGACGAATG 59.689 43.478 23.33 3.98 0.00 2.67
261 262 2.288729 TCTATGCTGCAATGACGAATGC 59.711 45.455 6.36 0.00 42.86 3.56
263 264 0.109643 TGCTGCAATGACGAATGCAC 60.110 50.000 0.00 0.00 46.87 4.57
264 265 0.799534 GCTGCAATGACGAATGCACC 60.800 55.000 0.00 0.00 46.87 5.01
265 266 0.179156 CTGCAATGACGAATGCACCC 60.179 55.000 0.00 0.00 46.87 4.61
266 267 1.139520 GCAATGACGAATGCACCCC 59.860 57.895 0.00 0.00 42.12 4.95
267 268 1.429021 CAATGACGAATGCACCCCG 59.571 57.895 0.00 0.00 0.00 5.73
268 269 2.406616 AATGACGAATGCACCCCGC 61.407 57.895 0.00 0.00 42.89 6.13
316 317 1.021202 CTGCAACGACAAGGTTGGAA 58.979 50.000 7.45 0.00 45.58 3.53
347 348 3.483734 CTCTAGCGTATCAGTGTATGCG 58.516 50.000 8.07 8.07 40.63 4.73
349 350 2.121116 AGCGTATCAGTGTATGCGTC 57.879 50.000 12.04 6.94 40.63 5.19
351 352 1.269102 GCGTATCAGTGTATGCGTCCT 60.269 52.381 12.04 0.00 37.31 3.85
352 353 2.385315 CGTATCAGTGTATGCGTCCTG 58.615 52.381 0.00 0.00 31.38 3.86
372 373 2.165437 TGCAAACAAAGGTGACAAGGTC 59.835 45.455 0.00 0.00 0.00 3.85
374 375 2.757868 CAAACAAAGGTGACAAGGTCCA 59.242 45.455 0.00 0.00 0.00 4.02
376 377 4.447138 AACAAAGGTGACAAGGTCCATA 57.553 40.909 0.00 0.00 0.00 2.74
377 378 3.751518 ACAAAGGTGACAAGGTCCATAC 58.248 45.455 0.00 0.00 0.00 2.39
381 382 1.082117 GTGACAAGGTCCATACGCGG 61.082 60.000 12.47 0.00 0.00 6.46
386 387 4.274700 GGTCCATACGCGGCGCTA 62.275 66.667 30.54 20.29 0.00 4.26
389 390 1.590525 TCCATACGCGGCGCTAAAG 60.591 57.895 30.54 16.68 0.00 1.85
399 400 2.556286 GCGCTAAAGGCCAAAGACT 58.444 52.632 5.01 0.00 37.74 3.24
410 418 2.421424 GGCCAAAGACTGATGCTACAAG 59.579 50.000 0.00 0.00 0.00 3.16
421 429 1.207488 TGCTACAAGGTGGCCTCCAT 61.207 55.000 25.36 11.49 39.28 3.41
470 478 1.825474 GCTGGAGACCTGCTACTACAA 59.175 52.381 11.37 0.00 43.62 2.41
495 504 1.968017 CACGCCCTGCTGTGAACAT 60.968 57.895 5.53 0.00 36.03 2.71
499 508 1.588082 CCCTGCTGTGAACATTGGC 59.412 57.895 0.00 0.00 0.00 4.52
505 514 4.776647 GTGAACATTGGCGGCGGC 62.777 66.667 27.76 27.76 38.90 6.53
556 565 1.760613 TCGTTAGCTTCTACATGGGGG 59.239 52.381 0.00 0.00 0.00 5.40
557 566 1.485066 CGTTAGCTTCTACATGGGGGT 59.515 52.381 0.00 0.00 0.00 4.95
583 592 1.635663 CCCACGCTCCGATTGTTGTC 61.636 60.000 0.00 0.00 0.00 3.18
588 597 0.731514 GCTCCGATTGTTGTCGACGA 60.732 55.000 11.62 6.16 44.06 4.20
608 618 2.048222 TGCGCAAGAGGGAACGAG 60.048 61.111 8.16 0.00 43.02 4.18
612 622 1.219393 GCAAGAGGGAACGAGGAGG 59.781 63.158 0.00 0.00 0.00 4.30
620 630 3.240134 GAACGAGGAGGGTGCTGCA 62.240 63.158 0.00 0.00 0.00 4.41
647 658 2.165437 AGGTTTTTCGCTGAGTTTGCAA 59.835 40.909 0.00 0.00 0.00 4.08
648 659 2.281498 GGTTTTTCGCTGAGTTTGCAAC 59.719 45.455 0.00 0.00 0.00 4.17
658 669 4.618489 GCTGAGTTTGCAACATATTGTGTC 59.382 41.667 0.00 0.00 41.14 3.67
662 673 4.274705 AGTTTGCAACATATTGTGTCGTCA 59.725 37.500 0.00 0.00 41.14 4.35
715 726 7.483307 ACAACACAACGAAGTAGTTAGAGTTA 58.517 34.615 0.00 0.00 45.00 2.24
716 727 7.433425 ACAACACAACGAAGTAGTTAGAGTTAC 59.567 37.037 0.00 0.00 45.00 2.50
721 732 8.021973 ACAACGAAGTAGTTAGAGTTACATCTG 58.978 37.037 0.00 0.00 45.00 2.90
735 746 1.153901 ATCTGACGGTTACGCGTGG 60.154 57.895 24.59 10.89 46.04 4.94
747 758 3.810896 GCGTGGTTCAATCGGGCC 61.811 66.667 0.00 0.00 0.00 5.80
781 792 3.248764 ATCCCTGGATCAGCTGGC 58.751 61.111 15.13 6.41 0.00 4.85
782 793 1.385631 ATCCCTGGATCAGCTGGCT 60.386 57.895 15.13 0.98 0.00 4.75
783 794 1.706995 ATCCCTGGATCAGCTGGCTG 61.707 60.000 15.13 15.58 44.86 4.85
784 795 2.192443 CCTGGATCAGCTGGCTGG 59.808 66.667 20.41 9.23 43.75 4.85
785 796 2.516460 CTGGATCAGCTGGCTGGC 60.516 66.667 20.41 13.35 43.75 4.85
786 797 4.478371 TGGATCAGCTGGCTGGCG 62.478 66.667 20.41 0.00 43.75 5.69
805 816 2.107141 GTAGCGCTCGCCCTGAAT 59.893 61.111 16.34 0.00 43.17 2.57
810 1088 0.248094 GCGCTCGCCCTGAATAAAAC 60.248 55.000 0.00 0.00 34.56 2.43
873 1151 7.283127 ACAAATTATCTCTACCGTTCATTGCAT 59.717 33.333 0.00 0.00 0.00 3.96
913 1191 2.179427 CCTGGAAAATTCAGAACCCCC 58.821 52.381 0.00 0.00 34.36 5.40
1086 2212 0.747255 CCCAGTACCTCTCCATCACG 59.253 60.000 0.00 0.00 0.00 4.35
1241 2367 2.202756 GGACCGCATCGTCTCCAC 60.203 66.667 0.00 0.00 33.07 4.02
1242 2368 2.711922 GGACCGCATCGTCTCCACT 61.712 63.158 0.00 0.00 33.07 4.00
1812 2938 1.153469 GAAGGAGCTGGAGAAGGCG 60.153 63.158 0.00 0.00 0.00 5.52
2182 3308 0.394352 GGAGACATTTGCCGGGTGAT 60.394 55.000 2.18 0.00 0.00 3.06
2184 3310 0.327924 AGACATTTGCCGGGTGATGA 59.672 50.000 2.18 0.00 0.00 2.92
2213 3339 2.874010 ATCGTGCTCGGTTCGCTCTG 62.874 60.000 8.49 0.00 37.69 3.35
2322 3448 6.379133 ACATTGCCATGAGATTTAGACATTGT 59.621 34.615 4.52 0.00 34.11 2.71
2356 3482 0.468226 ACGGTGAAGAGAGCAAACCA 59.532 50.000 0.00 0.00 0.00 3.67
2357 3483 1.134220 ACGGTGAAGAGAGCAAACCAA 60.134 47.619 0.00 0.00 0.00 3.67
2368 3494 6.585416 AGAGAGCAAACCAAAATTTGTGATT 58.415 32.000 4.92 0.00 40.92 2.57
2383 3509 5.512942 TTGTGATTGGATGGTTAGAAGGA 57.487 39.130 0.00 0.00 0.00 3.36
2384 3510 4.843728 TGTGATTGGATGGTTAGAAGGAC 58.156 43.478 0.00 0.00 0.00 3.85
2389 3515 1.829222 GGATGGTTAGAAGGACCGTGA 59.171 52.381 0.00 0.00 40.13 4.35
2393 3519 4.931661 TGGTTAGAAGGACCGTGATATC 57.068 45.455 0.00 0.00 40.13 1.63
2395 3521 4.960469 TGGTTAGAAGGACCGTGATATCTT 59.040 41.667 3.98 0.00 40.13 2.40
2399 3525 8.148999 GGTTAGAAGGACCGTGATATCTTTAAT 58.851 37.037 3.98 0.00 0.00 1.40
2401 3527 7.604657 AGAAGGACCGTGATATCTTTAATCT 57.395 36.000 3.98 0.00 0.00 2.40
2405 3531 7.763356 AGGACCGTGATATCTTTAATCTATCG 58.237 38.462 3.98 0.00 0.00 2.92
2407 3533 7.148120 GGACCGTGATATCTTTAATCTATCGGA 60.148 40.741 3.98 0.00 36.87 4.55
2410 3536 9.587772 CCGTGATATCTTTAATCTATCGGAATT 57.412 33.333 3.98 0.00 36.23 2.17
2437 3563 7.404671 AGTTCTAAACTTTGACATTGGTGTT 57.595 32.000 0.00 0.00 39.04 3.32
2440 3566 6.039616 TCTAAACTTTGACATTGGTGTTTGC 58.960 36.000 0.00 0.00 39.09 3.68
2447 3573 5.731599 TGACATTGGTGTTTGCATTTTTC 57.268 34.783 0.00 0.00 39.09 2.29
2479 3605 7.921786 ATTTTAAGTCTTTCGATGATGTGGA 57.078 32.000 0.00 0.00 0.00 4.02
2489 3615 3.136260 TCGATGATGTGGATTCAATGGGA 59.864 43.478 0.00 0.00 0.00 4.37
2498 3624 2.356069 GGATTCAATGGGAAGAAGACGC 59.644 50.000 0.00 0.00 39.30 5.19
2500 3626 2.859165 TCAATGGGAAGAAGACGCTT 57.141 45.000 0.00 0.00 0.00 4.68
2501 3627 3.140325 TCAATGGGAAGAAGACGCTTT 57.860 42.857 0.00 0.00 0.00 3.51
2502 3628 3.486383 TCAATGGGAAGAAGACGCTTTT 58.514 40.909 0.00 0.00 0.00 2.27
2517 3643 3.181510 ACGCTTTTGTCGATTATGAAGGC 60.182 43.478 0.00 0.00 0.00 4.35
2520 3646 4.671766 GCTTTTGTCGATTATGAAGGCGTT 60.672 41.667 0.00 0.00 0.00 4.84
2526 3652 2.418628 CGATTATGAAGGCGTTTGTGGT 59.581 45.455 0.00 0.00 0.00 4.16
2528 3654 2.552599 TATGAAGGCGTTTGTGGTGA 57.447 45.000 0.00 0.00 0.00 4.02
2532 3658 1.002792 GAAGGCGTTTGTGGTGAGTTC 60.003 52.381 0.00 0.00 0.00 3.01
2535 3661 0.042448 GCGTTTGTGGTGAGTTCGAC 60.042 55.000 0.00 0.00 0.00 4.20
2560 3686 2.274189 ACAAATGATGTGCCGACTCGG 61.274 52.381 13.53 13.53 41.93 4.63
2571 3697 2.174969 CGACTCGGTCTCTCGGAGG 61.175 68.421 4.96 0.00 44.40 4.30
2588 3714 2.326428 GAGGTGCTTATAGGGGTAGCA 58.674 52.381 0.00 0.00 42.22 3.49
2607 3733 3.696051 AGCATGGAGTAAATTGCACGAAT 59.304 39.130 0.00 0.00 37.56 3.34
2694 3826 7.140705 TCATGTCTTCAGTAATGTTTTTGCAG 58.859 34.615 0.00 0.00 0.00 4.41
2752 3884 0.758734 TTATGACAGATGAGGCCCGG 59.241 55.000 0.00 0.00 0.00 5.73
2757 3889 3.790437 AGATGAGGCCCGGCAGTG 61.790 66.667 12.58 0.00 0.00 3.66
2780 3912 1.273048 GCTGACATGGCACCAATTTCA 59.727 47.619 0.00 0.00 0.00 2.69
2785 3917 2.036217 ACATGGCACCAATTTCACACAG 59.964 45.455 0.00 0.00 0.00 3.66
2814 3947 5.643348 ACATGAAATCGTTTGCTAGATGTGA 59.357 36.000 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.370349 GAAGGACGAGATGGACTGAGA 58.630 52.381 0.00 0.00 0.00 3.27
2 3 1.475403 GGAAGGACGAGATGGACTGA 58.525 55.000 0.00 0.00 0.00 3.41
4 5 0.041238 TGGGAAGGACGAGATGGACT 59.959 55.000 0.00 0.00 0.00 3.85
5 6 0.902531 TTGGGAAGGACGAGATGGAC 59.097 55.000 0.00 0.00 0.00 4.02
7 8 0.613260 TGTTGGGAAGGACGAGATGG 59.387 55.000 0.00 0.00 0.00 3.51
9 10 1.938585 TCTGTTGGGAAGGACGAGAT 58.061 50.000 0.00 0.00 0.00 2.75
10 11 1.550524 CATCTGTTGGGAAGGACGAGA 59.449 52.381 0.00 0.00 0.00 4.04
11 12 1.276421 ACATCTGTTGGGAAGGACGAG 59.724 52.381 0.00 0.00 0.00 4.18
14 15 4.843728 TCATAACATCTGTTGGGAAGGAC 58.156 43.478 5.84 0.00 38.90 3.85
16 17 3.629398 GCTCATAACATCTGTTGGGAAGG 59.371 47.826 5.84 0.00 38.90 3.46
17 18 4.521146 AGCTCATAACATCTGTTGGGAAG 58.479 43.478 5.84 0.47 38.90 3.46
18 19 4.019411 TGAGCTCATAACATCTGTTGGGAA 60.019 41.667 13.74 0.00 38.90 3.97
19 20 3.519107 TGAGCTCATAACATCTGTTGGGA 59.481 43.478 13.74 2.83 38.90 4.37
20 21 3.624861 GTGAGCTCATAACATCTGTTGGG 59.375 47.826 21.47 0.00 38.90 4.12
21 22 3.624861 GGTGAGCTCATAACATCTGTTGG 59.375 47.826 21.47 0.00 38.90 3.77
22 23 4.093998 GTGGTGAGCTCATAACATCTGTTG 59.906 45.833 21.47 0.00 38.90 3.33
23 24 4.256920 GTGGTGAGCTCATAACATCTGTT 58.743 43.478 21.47 0.69 41.73 3.16
24 25 3.369892 GGTGGTGAGCTCATAACATCTGT 60.370 47.826 21.47 0.00 0.00 3.41
25 26 3.201290 GGTGGTGAGCTCATAACATCTG 58.799 50.000 21.47 0.00 0.00 2.90
26 27 2.840038 TGGTGGTGAGCTCATAACATCT 59.160 45.455 21.47 0.00 0.00 2.90
27 28 2.939103 GTGGTGGTGAGCTCATAACATC 59.061 50.000 21.47 18.93 0.00 3.06
28 29 2.305635 TGTGGTGGTGAGCTCATAACAT 59.694 45.455 21.47 0.00 0.00 2.71
29 30 1.696884 TGTGGTGGTGAGCTCATAACA 59.303 47.619 21.47 17.81 0.00 2.41
30 31 2.076863 GTGTGGTGGTGAGCTCATAAC 58.923 52.381 21.47 19.74 0.00 1.89
31 32 1.696884 TGTGTGGTGGTGAGCTCATAA 59.303 47.619 21.47 8.53 0.00 1.90
32 33 1.001974 GTGTGTGGTGGTGAGCTCATA 59.998 52.381 21.47 9.69 0.00 2.15
33 34 0.250467 GTGTGTGGTGGTGAGCTCAT 60.250 55.000 21.47 0.00 0.00 2.90
34 35 1.146041 GTGTGTGGTGGTGAGCTCA 59.854 57.895 13.74 13.74 0.00 4.26
35 36 1.598130 GGTGTGTGGTGGTGAGCTC 60.598 63.158 6.82 6.82 0.00 4.09
36 37 2.374525 TGGTGTGTGGTGGTGAGCT 61.375 57.895 0.00 0.00 0.00 4.09
37 38 2.186826 GTGGTGTGTGGTGGTGAGC 61.187 63.158 0.00 0.00 0.00 4.26
38 39 0.179020 ATGTGGTGTGTGGTGGTGAG 60.179 55.000 0.00 0.00 0.00 3.51
39 40 0.257328 AATGTGGTGTGTGGTGGTGA 59.743 50.000 0.00 0.00 0.00 4.02
40 41 0.385029 CAATGTGGTGTGTGGTGGTG 59.615 55.000 0.00 0.00 0.00 4.17
41 42 0.754957 CCAATGTGGTGTGTGGTGGT 60.755 55.000 0.00 0.00 31.35 4.16
42 43 1.462731 CCCAATGTGGTGTGTGGTGG 61.463 60.000 0.00 0.00 35.17 4.61
43 44 1.462731 CCCCAATGTGGTGTGTGGTG 61.463 60.000 0.00 0.00 35.17 4.17
44 45 1.152567 CCCCAATGTGGTGTGTGGT 60.153 57.895 0.00 0.00 35.17 4.16
45 46 1.907807 CCCCCAATGTGGTGTGTGG 60.908 63.158 0.00 0.00 35.17 4.17
46 47 1.152599 TCCCCCAATGTGGTGTGTG 59.847 57.895 0.00 0.00 35.17 3.82
47 48 1.152830 GTCCCCCAATGTGGTGTGT 59.847 57.895 0.00 0.00 35.17 3.72
48 49 0.695924 TAGTCCCCCAATGTGGTGTG 59.304 55.000 0.00 0.00 35.17 3.82
49 50 0.696501 GTAGTCCCCCAATGTGGTGT 59.303 55.000 0.00 0.00 35.17 4.16
50 51 0.034477 GGTAGTCCCCCAATGTGGTG 60.034 60.000 0.00 0.00 35.17 4.17
51 52 1.559065 CGGTAGTCCCCCAATGTGGT 61.559 60.000 0.00 0.00 35.17 4.16
52 53 1.223487 CGGTAGTCCCCCAATGTGG 59.777 63.158 0.00 0.00 37.25 4.17
53 54 0.837272 ATCGGTAGTCCCCCAATGTG 59.163 55.000 0.00 0.00 0.00 3.21
54 55 0.837272 CATCGGTAGTCCCCCAATGT 59.163 55.000 0.00 0.00 0.00 2.71
55 56 0.535102 GCATCGGTAGTCCCCCAATG 60.535 60.000 0.00 0.00 0.00 2.82
56 57 0.986019 TGCATCGGTAGTCCCCCAAT 60.986 55.000 0.00 0.00 0.00 3.16
57 58 1.613928 TGCATCGGTAGTCCCCCAA 60.614 57.895 0.00 0.00 0.00 4.12
58 59 2.039787 TGCATCGGTAGTCCCCCA 59.960 61.111 0.00 0.00 0.00 4.96
59 60 2.822399 CTGCATCGGTAGTCCCCC 59.178 66.667 0.00 0.00 0.00 5.40
60 61 2.109181 GCTGCATCGGTAGTCCCC 59.891 66.667 0.00 0.00 0.00 4.81
61 62 1.521681 GTGCTGCATCGGTAGTCCC 60.522 63.158 5.27 0.00 0.00 4.46
62 63 1.521681 GGTGCTGCATCGGTAGTCC 60.522 63.158 5.27 0.00 0.00 3.85
63 64 1.521681 GGGTGCTGCATCGGTAGTC 60.522 63.158 5.27 0.00 0.00 2.59
64 65 2.290287 TGGGTGCTGCATCGGTAGT 61.290 57.895 5.27 0.00 0.00 2.73
65 66 1.815421 GTGGGTGCTGCATCGGTAG 60.815 63.158 5.27 0.00 0.00 3.18
66 67 0.973496 TAGTGGGTGCTGCATCGGTA 60.973 55.000 5.27 0.00 0.00 4.02
67 68 2.290287 TAGTGGGTGCTGCATCGGT 61.290 57.895 5.27 0.00 0.00 4.69
68 69 1.815421 GTAGTGGGTGCTGCATCGG 60.815 63.158 5.27 0.00 0.00 4.18
69 70 2.167219 CGTAGTGGGTGCTGCATCG 61.167 63.158 5.27 0.00 0.00 3.84
70 71 0.673644 AACGTAGTGGGTGCTGCATC 60.674 55.000 5.27 4.51 45.00 3.91
71 72 0.955428 CAACGTAGTGGGTGCTGCAT 60.955 55.000 5.27 0.00 45.00 3.96
72 73 1.596752 CAACGTAGTGGGTGCTGCA 60.597 57.895 0.00 0.00 45.00 4.41
73 74 2.966309 GCAACGTAGTGGGTGCTGC 61.966 63.158 0.48 0.00 45.00 5.25
74 75 2.325082 GGCAACGTAGTGGGTGCTG 61.325 63.158 7.51 0.00 45.00 4.41
75 76 2.032071 GGCAACGTAGTGGGTGCT 59.968 61.111 7.51 0.00 45.00 4.40
76 77 2.281208 TGGCAACGTAGTGGGTGC 60.281 61.111 0.00 0.00 45.00 5.01
77 78 1.227704 TGTGGCAACGTAGTGGGTG 60.228 57.895 0.00 0.00 45.00 4.61
78 79 1.070786 CTGTGGCAACGTAGTGGGT 59.929 57.895 0.00 0.00 45.00 4.51
79 80 0.319083 TACTGTGGCAACGTAGTGGG 59.681 55.000 0.00 0.00 45.00 4.61
80 81 1.271379 TCTACTGTGGCAACGTAGTGG 59.729 52.381 18.34 10.33 45.00 4.00
81 82 2.717580 TCTACTGTGGCAACGTAGTG 57.282 50.000 18.34 0.00 45.00 2.74
83 84 4.103357 GTGTATCTACTGTGGCAACGTAG 58.897 47.826 14.82 14.82 42.51 3.51
84 85 3.506844 TGTGTATCTACTGTGGCAACGTA 59.493 43.478 0.00 0.00 42.51 3.57
85 86 2.297880 TGTGTATCTACTGTGGCAACGT 59.702 45.455 0.00 0.00 42.51 3.99
86 87 2.666508 GTGTGTATCTACTGTGGCAACG 59.333 50.000 0.00 0.00 42.51 4.10
87 88 3.659786 TGTGTGTATCTACTGTGGCAAC 58.340 45.455 0.00 0.00 0.00 4.17
88 89 4.062293 GTTGTGTGTATCTACTGTGGCAA 58.938 43.478 0.00 0.00 0.00 4.52
89 90 3.659786 GTTGTGTGTATCTACTGTGGCA 58.340 45.455 0.00 0.00 0.00 4.92
90 91 2.666508 CGTTGTGTGTATCTACTGTGGC 59.333 50.000 0.00 0.00 0.00 5.01
91 92 4.168922 TCGTTGTGTGTATCTACTGTGG 57.831 45.455 0.00 0.00 0.00 4.17
92 93 4.798907 GGATCGTTGTGTGTATCTACTGTG 59.201 45.833 0.00 0.00 0.00 3.66
93 94 4.461431 TGGATCGTTGTGTGTATCTACTGT 59.539 41.667 0.00 0.00 0.00 3.55
94 95 4.993905 TGGATCGTTGTGTGTATCTACTG 58.006 43.478 0.00 0.00 0.00 2.74
95 96 5.854010 ATGGATCGTTGTGTGTATCTACT 57.146 39.130 0.00 0.00 0.00 2.57
96 97 5.276868 GCAATGGATCGTTGTGTGTATCTAC 60.277 44.000 10.12 0.00 33.39 2.59
97 98 4.808895 GCAATGGATCGTTGTGTGTATCTA 59.191 41.667 10.12 0.00 33.39 1.98
98 99 3.623060 GCAATGGATCGTTGTGTGTATCT 59.377 43.478 10.12 0.00 33.39 1.98
99 100 3.623060 AGCAATGGATCGTTGTGTGTATC 59.377 43.478 10.12 0.00 33.39 2.24
100 101 3.374988 CAGCAATGGATCGTTGTGTGTAT 59.625 43.478 10.12 0.00 33.39 2.29
101 102 2.741517 CAGCAATGGATCGTTGTGTGTA 59.258 45.455 10.12 0.00 33.39 2.90
102 103 1.536766 CAGCAATGGATCGTTGTGTGT 59.463 47.619 10.12 0.00 33.39 3.72
103 104 1.536766 ACAGCAATGGATCGTTGTGTG 59.463 47.619 10.12 10.06 33.39 3.82
104 105 1.896220 ACAGCAATGGATCGTTGTGT 58.104 45.000 10.12 9.83 33.39 3.72
105 106 4.406069 CTTTACAGCAATGGATCGTTGTG 58.594 43.478 10.12 9.38 33.39 3.33
106 107 3.119849 GCTTTACAGCAATGGATCGTTGT 60.120 43.478 10.12 3.08 46.49 3.32
107 108 3.429085 GCTTTACAGCAATGGATCGTTG 58.571 45.455 0.00 5.38 46.49 4.10
108 109 3.764885 GCTTTACAGCAATGGATCGTT 57.235 42.857 0.00 0.00 46.49 3.85
120 121 2.789208 CAATGACGGCATGCTTTACAG 58.211 47.619 18.92 5.10 34.26 2.74
121 122 1.135431 GCAATGACGGCATGCTTTACA 60.135 47.619 18.92 12.92 34.26 2.41
122 123 1.135431 TGCAATGACGGCATGCTTTAC 60.135 47.619 18.92 7.62 36.11 2.01
123 124 1.135431 GTGCAATGACGGCATGCTTTA 60.135 47.619 18.92 2.03 44.11 1.85
124 125 0.388907 GTGCAATGACGGCATGCTTT 60.389 50.000 18.92 4.24 44.11 3.51
125 126 1.213537 GTGCAATGACGGCATGCTT 59.786 52.632 18.92 4.66 44.11 3.91
126 127 1.676635 AGTGCAATGACGGCATGCT 60.677 52.632 18.92 9.01 44.11 3.79
127 128 1.515519 CAGTGCAATGACGGCATGC 60.516 57.895 8.85 9.90 44.11 4.06
128 129 1.515519 GCAGTGCAATGACGGCATG 60.516 57.895 20.00 0.00 44.11 4.06
129 130 1.972752 TGCAGTGCAATGACGGCAT 60.973 52.632 20.00 0.00 41.32 4.40
130 131 2.594013 TGCAGTGCAATGACGGCA 60.594 55.556 20.00 7.08 43.51 5.69
131 132 0.451383 TAATGCAGTGCAATGACGGC 59.549 50.000 23.90 4.10 43.62 5.68
132 133 1.739466 AGTAATGCAGTGCAATGACGG 59.261 47.619 23.90 0.00 43.62 4.79
133 134 4.801147 ATAGTAATGCAGTGCAATGACG 57.199 40.909 23.90 0.00 43.62 4.35
134 135 4.736793 GCAATAGTAATGCAGTGCAATGAC 59.263 41.667 23.90 18.97 43.62 3.06
135 136 4.923893 GCAATAGTAATGCAGTGCAATGA 58.076 39.130 23.90 7.41 43.62 2.57
145 146 2.666619 GCGATGCCTGCAATAGTAATGC 60.667 50.000 3.08 3.08 44.08 3.56
146 147 2.095567 GGCGATGCCTGCAATAGTAATG 60.096 50.000 0.00 0.00 46.69 1.90
147 148 2.154462 GGCGATGCCTGCAATAGTAAT 58.846 47.619 0.00 0.00 46.69 1.89
148 149 1.593196 GGCGATGCCTGCAATAGTAA 58.407 50.000 0.00 0.00 46.69 2.24
149 150 3.305709 GGCGATGCCTGCAATAGTA 57.694 52.632 0.00 0.00 46.69 1.82
150 151 4.147701 GGCGATGCCTGCAATAGT 57.852 55.556 0.00 0.00 46.69 2.12
159 160 3.261528 GCTTGCTAAAGAGGCGATGCC 62.262 57.143 0.00 0.00 40.48 4.40
160 161 0.028637 GCTTGCTAAAGAGGCGATGC 59.971 55.000 0.00 0.00 35.19 3.91
161 162 1.661341 AGCTTGCTAAAGAGGCGATG 58.339 50.000 0.00 0.00 35.19 3.84
162 163 2.804933 GCTAGCTTGCTAAAGAGGCGAT 60.805 50.000 13.17 0.00 35.19 4.58
163 164 1.471676 GCTAGCTTGCTAAAGAGGCGA 60.472 52.381 13.17 0.00 35.19 5.54
164 165 0.933796 GCTAGCTTGCTAAAGAGGCG 59.066 55.000 13.17 0.00 35.19 5.52
165 166 2.029838 TGCTAGCTTGCTAAAGAGGC 57.970 50.000 20.64 4.23 35.19 4.70
166 167 3.338249 TGTTGCTAGCTTGCTAAAGAGG 58.662 45.455 20.64 0.00 35.19 3.69
167 168 3.373439 CCTGTTGCTAGCTTGCTAAAGAG 59.627 47.826 19.79 14.31 35.19 2.85
168 169 3.244561 ACCTGTTGCTAGCTTGCTAAAGA 60.245 43.478 19.79 6.62 35.19 2.52
169 170 3.077359 ACCTGTTGCTAGCTTGCTAAAG 58.923 45.455 20.64 16.68 36.41 1.85
170 171 2.813754 CACCTGTTGCTAGCTTGCTAAA 59.186 45.455 20.64 7.95 0.00 1.85
171 172 2.426522 CACCTGTTGCTAGCTTGCTAA 58.573 47.619 20.64 10.61 0.00 3.09
172 173 1.339055 CCACCTGTTGCTAGCTTGCTA 60.339 52.381 20.64 10.95 0.00 3.49
173 174 0.607489 CCACCTGTTGCTAGCTTGCT 60.607 55.000 20.64 0.00 0.00 3.91
174 175 1.878775 CCACCTGTTGCTAGCTTGC 59.121 57.895 17.23 13.56 0.00 4.01
175 176 1.878775 GCCACCTGTTGCTAGCTTG 59.121 57.895 17.23 3.26 0.00 4.01
176 177 1.672356 CGCCACCTGTTGCTAGCTT 60.672 57.895 17.23 0.00 0.00 3.74
177 178 2.046892 CGCCACCTGTTGCTAGCT 60.047 61.111 17.23 0.00 0.00 3.32
178 179 3.804193 GCGCCACCTGTTGCTAGC 61.804 66.667 8.10 8.10 0.00 3.42
179 180 1.915614 CTTGCGCCACCTGTTGCTAG 61.916 60.000 4.18 0.00 0.00 3.42
180 181 1.965930 CTTGCGCCACCTGTTGCTA 60.966 57.895 4.18 0.00 0.00 3.49
181 182 3.289834 CTTGCGCCACCTGTTGCT 61.290 61.111 4.18 0.00 0.00 3.91
182 183 4.347453 CCTTGCGCCACCTGTTGC 62.347 66.667 4.18 0.00 0.00 4.17
183 184 4.347453 GCCTTGCGCCACCTGTTG 62.347 66.667 4.18 0.00 0.00 3.33
184 185 4.586235 AGCCTTGCGCCACCTGTT 62.586 61.111 4.18 0.00 38.78 3.16
194 195 3.056313 GAATGGTGGCGAGCCTTGC 62.056 63.158 15.75 0.00 36.94 4.01
195 196 1.243342 TTGAATGGTGGCGAGCCTTG 61.243 55.000 15.75 0.00 36.94 3.61
196 197 0.962356 CTTGAATGGTGGCGAGCCTT 60.962 55.000 15.75 0.62 36.94 4.35
197 198 1.377725 CTTGAATGGTGGCGAGCCT 60.378 57.895 15.75 0.00 36.94 4.58
198 199 2.409870 CCTTGAATGGTGGCGAGCC 61.410 63.158 7.26 7.26 0.00 4.70
199 200 1.377202 TCCTTGAATGGTGGCGAGC 60.377 57.895 0.00 0.00 0.00 5.03
200 201 1.361668 CGTCCTTGAATGGTGGCGAG 61.362 60.000 0.00 0.00 0.00 5.03
201 202 1.375396 CGTCCTTGAATGGTGGCGA 60.375 57.895 0.00 0.00 0.00 5.54
202 203 1.234615 AACGTCCTTGAATGGTGGCG 61.235 55.000 0.00 0.00 0.00 5.69
203 204 0.240945 CAACGTCCTTGAATGGTGGC 59.759 55.000 0.00 0.00 30.42 5.01
204 205 1.890876 TCAACGTCCTTGAATGGTGG 58.109 50.000 0.00 0.00 35.84 4.61
205 206 2.414559 GCATCAACGTCCTTGAATGGTG 60.415 50.000 0.00 0.00 42.37 4.17
206 207 1.812571 GCATCAACGTCCTTGAATGGT 59.187 47.619 0.00 0.00 42.37 3.55
207 208 2.086869 AGCATCAACGTCCTTGAATGG 58.913 47.619 0.00 0.00 42.37 3.16
208 209 2.730090 GCAGCATCAACGTCCTTGAATG 60.730 50.000 0.00 0.00 42.37 2.67
209 210 1.470098 GCAGCATCAACGTCCTTGAAT 59.530 47.619 0.00 0.00 42.37 2.57
210 211 0.874390 GCAGCATCAACGTCCTTGAA 59.126 50.000 0.00 0.00 42.37 2.69
211 212 0.250252 TGCAGCATCAACGTCCTTGA 60.250 50.000 0.00 0.00 43.28 3.02
212 213 0.806868 ATGCAGCATCAACGTCCTTG 59.193 50.000 0.52 0.00 0.00 3.61
213 214 2.401583 TATGCAGCATCAACGTCCTT 57.598 45.000 12.38 0.00 0.00 3.36
214 215 2.009774 GTTATGCAGCATCAACGTCCT 58.990 47.619 12.38 0.00 0.00 3.85
215 216 1.737236 TGTTATGCAGCATCAACGTCC 59.263 47.619 12.38 0.00 0.00 4.79
216 217 2.223112 CCTGTTATGCAGCATCAACGTC 60.223 50.000 12.38 0.00 43.71 4.34
217 218 1.739466 CCTGTTATGCAGCATCAACGT 59.261 47.619 12.38 0.00 43.71 3.99
218 219 1.739466 ACCTGTTATGCAGCATCAACG 59.261 47.619 12.38 10.47 43.71 4.10
219 220 2.489329 ACACCTGTTATGCAGCATCAAC 59.511 45.455 12.38 14.43 43.71 3.18
220 221 2.749076 GACACCTGTTATGCAGCATCAA 59.251 45.455 12.38 2.23 43.71 2.57
221 222 2.026915 AGACACCTGTTATGCAGCATCA 60.027 45.455 12.38 3.69 43.71 3.07
222 223 2.636830 AGACACCTGTTATGCAGCATC 58.363 47.619 12.38 0.00 43.71 3.91
223 224 2.795231 AGACACCTGTTATGCAGCAT 57.205 45.000 13.73 13.73 43.71 3.79
224 225 3.534554 CATAGACACCTGTTATGCAGCA 58.465 45.455 0.00 0.00 43.71 4.41
225 226 2.289002 GCATAGACACCTGTTATGCAGC 59.711 50.000 18.06 0.00 45.54 5.25
228 229 2.289002 GCAGCATAGACACCTGTTATGC 59.711 50.000 16.60 16.60 46.21 3.14
229 230 3.534554 TGCAGCATAGACACCTGTTATG 58.465 45.455 0.00 0.00 0.00 1.90
230 231 3.912496 TGCAGCATAGACACCTGTTAT 57.088 42.857 0.00 0.00 0.00 1.89
231 232 3.694043 TTGCAGCATAGACACCTGTTA 57.306 42.857 0.00 0.00 0.00 2.41
232 233 2.566833 TTGCAGCATAGACACCTGTT 57.433 45.000 0.00 0.00 0.00 3.16
233 234 2.026915 TCATTGCAGCATAGACACCTGT 60.027 45.455 0.00 0.00 0.00 4.00
234 235 2.353889 GTCATTGCAGCATAGACACCTG 59.646 50.000 18.18 0.00 0.00 4.00
235 236 2.636830 GTCATTGCAGCATAGACACCT 58.363 47.619 18.18 0.00 0.00 4.00
236 237 1.328680 CGTCATTGCAGCATAGACACC 59.671 52.381 21.18 2.53 0.00 4.16
237 238 2.270923 TCGTCATTGCAGCATAGACAC 58.729 47.619 21.18 5.00 0.00 3.67
238 239 2.671130 TCGTCATTGCAGCATAGACA 57.329 45.000 21.18 10.29 0.00 3.41
239 240 3.847467 GCATTCGTCATTGCAGCATAGAC 60.847 47.826 14.71 14.71 38.72 2.59
240 241 2.288729 GCATTCGTCATTGCAGCATAGA 59.711 45.455 0.00 0.00 38.72 1.98
241 242 2.032426 TGCATTCGTCATTGCAGCATAG 59.968 45.455 0.00 0.00 43.54 2.23
242 243 2.015587 TGCATTCGTCATTGCAGCATA 58.984 42.857 0.00 0.00 43.54 3.14
243 244 0.812549 TGCATTCGTCATTGCAGCAT 59.187 45.000 0.00 0.00 43.54 3.79
244 245 2.255430 TGCATTCGTCATTGCAGCA 58.745 47.368 0.00 0.00 43.54 4.41
247 248 1.594194 GGGGTGCATTCGTCATTGCA 61.594 55.000 0.00 0.00 46.03 4.08
248 249 1.139520 GGGGTGCATTCGTCATTGC 59.860 57.895 0.00 0.00 39.33 3.56
249 250 1.429021 CGGGGTGCATTCGTCATTG 59.571 57.895 0.00 0.00 0.00 2.82
250 251 2.406616 GCGGGGTGCATTCGTCATT 61.407 57.895 0.00 0.00 45.45 2.57
251 252 2.824041 GCGGGGTGCATTCGTCAT 60.824 61.111 0.00 0.00 45.45 3.06
264 265 2.731587 CTTTGAACTTGCACGGCGGG 62.732 60.000 13.24 8.95 0.00 6.13
265 266 1.370414 CTTTGAACTTGCACGGCGG 60.370 57.895 13.24 0.66 0.00 6.13
266 267 2.010817 GCTTTGAACTTGCACGGCG 61.011 57.895 4.80 4.80 0.00 6.46
267 268 0.527385 TTGCTTTGAACTTGCACGGC 60.527 50.000 0.00 0.00 36.37 5.68
268 269 1.480205 CTTGCTTTGAACTTGCACGG 58.520 50.000 0.00 0.00 36.37 4.94
269 270 0.848305 GCTTGCTTTGAACTTGCACG 59.152 50.000 0.00 0.00 36.37 5.34
270 271 1.211743 GGCTTGCTTTGAACTTGCAC 58.788 50.000 0.00 0.00 36.37 4.57
271 272 0.248990 CGGCTTGCTTTGAACTTGCA 60.249 50.000 0.00 0.00 34.69 4.08
272 273 1.551503 GCGGCTTGCTTTGAACTTGC 61.552 55.000 0.00 0.00 41.73 4.01
273 274 0.940991 GGCGGCTTGCTTTGAACTTG 60.941 55.000 0.00 0.00 45.43 3.16
274 275 1.363807 GGCGGCTTGCTTTGAACTT 59.636 52.632 0.00 0.00 45.43 2.66
275 276 1.391157 TTGGCGGCTTGCTTTGAACT 61.391 50.000 11.43 0.00 45.43 3.01
279 280 2.385091 GCATTGGCGGCTTGCTTTG 61.385 57.895 23.41 8.87 45.43 2.77
328 329 3.227147 GACGCATACACTGATACGCTAG 58.773 50.000 0.00 0.00 0.00 3.42
330 331 1.269102 GGACGCATACACTGATACGCT 60.269 52.381 0.00 0.00 0.00 5.07
333 334 2.128035 GCAGGACGCATACACTGATAC 58.872 52.381 0.00 0.00 41.79 2.24
347 348 1.748493 TGTCACCTTTGTTTGCAGGAC 59.252 47.619 0.00 0.00 33.90 3.85
349 350 2.481795 CCTTGTCACCTTTGTTTGCAGG 60.482 50.000 0.00 0.00 36.10 4.85
351 352 2.165437 GACCTTGTCACCTTTGTTTGCA 59.835 45.455 0.00 0.00 32.09 4.08
352 353 2.481276 GGACCTTGTCACCTTTGTTTGC 60.481 50.000 0.00 0.00 33.68 3.68
357 358 2.742053 CGTATGGACCTTGTCACCTTTG 59.258 50.000 0.00 0.00 33.68 2.77
358 359 2.874457 GCGTATGGACCTTGTCACCTTT 60.874 50.000 0.00 0.00 33.68 3.11
359 360 1.338769 GCGTATGGACCTTGTCACCTT 60.339 52.381 0.00 0.00 33.68 3.50
372 373 2.594962 CCTTTAGCGCCGCGTATGG 61.595 63.158 15.34 3.72 0.00 2.74
374 375 2.965462 GCCTTTAGCGCCGCGTAT 60.965 61.111 15.34 6.25 0.00 3.06
381 382 0.169009 CAGTCTTTGGCCTTTAGCGC 59.831 55.000 3.32 0.00 45.17 5.92
386 387 2.299326 AGCATCAGTCTTTGGCCTTT 57.701 45.000 3.32 0.00 0.00 3.11
389 390 2.113860 TGTAGCATCAGTCTTTGGCC 57.886 50.000 0.00 0.00 0.00 5.36
398 399 0.254178 AGGCCACCTTGTAGCATCAG 59.746 55.000 5.01 0.00 0.00 2.90
399 400 0.253044 GAGGCCACCTTGTAGCATCA 59.747 55.000 5.01 0.00 37.28 3.07
421 429 0.392706 TTGTCTCAGCTTTCAGCCGA 59.607 50.000 0.00 0.00 43.77 5.54
433 441 2.886523 CCAGCTTGTTGGATTTGTCTCA 59.113 45.455 0.00 0.00 40.87 3.27
437 445 2.887152 GTCTCCAGCTTGTTGGATTTGT 59.113 45.455 6.66 0.00 45.80 2.83
443 451 1.239968 GCAGGTCTCCAGCTTGTTGG 61.240 60.000 0.00 0.00 39.70 3.77
445 453 1.002544 GTAGCAGGTCTCCAGCTTGTT 59.997 52.381 10.64 0.00 43.87 2.83
464 472 1.164041 GGGCGTGTGTTGCTTGTAGT 61.164 55.000 0.00 0.00 0.00 2.73
470 478 4.569180 AGCAGGGCGTGTGTTGCT 62.569 61.111 9.16 0.00 41.74 3.91
473 481 2.884997 TTCACAGCAGGGCGTGTGTT 62.885 55.000 9.16 0.00 43.80 3.32
478 486 1.228245 AATGTTCACAGCAGGGCGT 60.228 52.632 0.00 0.00 0.00 5.68
556 565 4.699522 GGAGCGTGGGTGGGTCAC 62.700 72.222 0.00 0.00 33.71 3.67
568 577 1.702299 GTCGACAACAATCGGAGCG 59.298 57.895 11.55 0.00 42.50 5.03
583 592 3.816920 CTCTTGCGCACGTCGTCG 61.817 66.667 11.12 11.27 41.07 5.12
588 597 2.665185 GTTCCCTCTTGCGCACGT 60.665 61.111 11.12 0.00 0.00 4.49
602 612 2.435059 GCAGCACCCTCCTCGTTC 60.435 66.667 0.00 0.00 0.00 3.95
620 630 2.427095 ACTCAGCGAAAAACCTTTGCTT 59.573 40.909 0.00 0.00 31.04 3.91
624 634 3.186909 GCAAACTCAGCGAAAAACCTTT 58.813 40.909 0.00 0.00 0.00 3.11
625 635 2.165437 TGCAAACTCAGCGAAAAACCTT 59.835 40.909 0.00 0.00 33.85 3.50
647 658 7.021196 GCAAATACTTTGACGACACAATATGT 58.979 34.615 3.87 0.00 43.39 2.29
648 659 6.468956 GGCAAATACTTTGACGACACAATATG 59.531 38.462 3.87 0.00 43.26 1.78
662 673 2.731968 CGCTCGCATTGGCAAATACTTT 60.732 45.455 3.01 0.00 41.24 2.66
692 703 7.483307 TGTAACTCTAACTACTTCGTTGTGTT 58.517 34.615 0.00 0.00 0.00 3.32
715 726 0.731514 CACGCGTAACCGTCAGATGT 60.732 55.000 13.44 0.00 39.83 3.06
716 727 1.410737 CCACGCGTAACCGTCAGATG 61.411 60.000 13.44 0.00 39.83 2.90
721 732 1.214373 TTGAACCACGCGTAACCGTC 61.214 55.000 13.44 6.03 39.83 4.79
735 746 3.508840 CCAGCGGCCCGATTGAAC 61.509 66.667 7.68 0.00 0.00 3.18
767 778 2.192443 CCAGCCAGCTGATCCAGG 59.808 66.667 21.01 5.68 46.30 4.45
769 780 4.478371 CGCCAGCCAGCTGATCCA 62.478 66.667 21.01 0.00 46.30 3.41
787 798 2.402282 TATTCAGGGCGAGCGCTACG 62.402 60.000 11.50 17.28 41.60 3.51
788 799 0.249322 TTATTCAGGGCGAGCGCTAC 60.249 55.000 11.50 5.43 41.60 3.58
789 800 0.462375 TTTATTCAGGGCGAGCGCTA 59.538 50.000 11.50 0.76 41.60 4.26
790 801 0.392461 TTTTATTCAGGGCGAGCGCT 60.392 50.000 11.27 11.27 41.60 5.92
791 802 0.248094 GTTTTATTCAGGGCGAGCGC 60.248 55.000 6.27 6.27 41.06 5.92
792 803 0.026285 CGTTTTATTCAGGGCGAGCG 59.974 55.000 0.00 0.00 0.00 5.03
793 804 0.248094 GCGTTTTATTCAGGGCGAGC 60.248 55.000 0.00 0.00 0.00 5.03
794 805 1.083489 TGCGTTTTATTCAGGGCGAG 58.917 50.000 0.00 0.00 0.00 5.03
796 807 1.068885 TGTTGCGTTTTATTCAGGGCG 60.069 47.619 0.00 0.00 0.00 6.13
797 808 2.324860 GTGTTGCGTTTTATTCAGGGC 58.675 47.619 0.00 0.00 0.00 5.19
798 809 2.556622 AGGTGTTGCGTTTTATTCAGGG 59.443 45.455 0.00 0.00 0.00 4.45
800 811 4.854399 TGAAGGTGTTGCGTTTTATTCAG 58.146 39.130 0.00 0.00 0.00 3.02
802 813 4.148174 GCTTGAAGGTGTTGCGTTTTATTC 59.852 41.667 0.00 0.00 0.00 1.75
803 814 4.048504 GCTTGAAGGTGTTGCGTTTTATT 58.951 39.130 0.00 0.00 0.00 1.40
805 816 2.685897 AGCTTGAAGGTGTTGCGTTTTA 59.314 40.909 0.00 0.00 0.00 1.52
810 1088 3.347958 TTTTAGCTTGAAGGTGTTGCG 57.652 42.857 7.22 0.00 0.00 4.85
873 1151 4.698780 CAGGAAAATCTGAGCTGTTCATCA 59.301 41.667 0.00 0.00 36.93 3.07
913 1191 2.103094 TGGTTGAGAGGATAAGGCGATG 59.897 50.000 0.00 0.00 0.00 3.84
1186 2312 1.878522 CGTCTTCTTCATCGCCCCG 60.879 63.158 0.00 0.00 0.00 5.73
1791 2917 1.518133 CTTCTCCAGCTCCTTCGCG 60.518 63.158 0.00 0.00 34.40 5.87
1812 2938 3.352338 CTCGCCCCACTCGTACACC 62.352 68.421 0.00 0.00 0.00 4.16
1993 3119 2.435586 CGCTTGCCTCCTGTCCAG 60.436 66.667 0.00 0.00 0.00 3.86
2103 3229 1.446966 GAACTCCTGCACGAGCTCC 60.447 63.158 8.47 0.00 42.74 4.70
2213 3339 0.450482 CATCGACACGACAAAACCGC 60.450 55.000 0.00 0.00 39.18 5.68
2302 3428 8.388484 AGATTACAATGTCTAAATCTCATGGC 57.612 34.615 4.52 0.00 34.39 4.40
2322 3448 6.227522 TCTTCACCGTGATTGTTCAAGATTA 58.772 36.000 1.09 0.00 33.71 1.75
2329 3455 2.413453 GCTCTCTTCACCGTGATTGTTC 59.587 50.000 1.09 0.00 0.00 3.18
2356 3482 8.096414 CCTTCTAACCATCCAATCACAAATTTT 58.904 33.333 0.00 0.00 0.00 1.82
2357 3483 7.454380 TCCTTCTAACCATCCAATCACAAATTT 59.546 33.333 0.00 0.00 0.00 1.82
2368 3494 1.553248 CACGGTCCTTCTAACCATCCA 59.447 52.381 0.00 0.00 36.53 3.41
2383 3509 7.698506 TCCGATAGATTAAAGATATCACGGT 57.301 36.000 5.32 0.00 37.10 4.83
2384 3510 9.587772 AATTCCGATAGATTAAAGATATCACGG 57.412 33.333 5.32 0.00 37.11 4.94
2410 3536 7.122055 ACACCAATGTCAAAGTTTAGAACTTGA 59.878 33.333 6.81 4.78 42.52 3.02
2414 3540 7.464045 GCAAACACCAATGTCAAAGTTTAGAAC 60.464 37.037 0.00 0.00 38.45 3.01
2424 3550 5.879223 AGAAAAATGCAAACACCAATGTCAA 59.121 32.000 0.00 0.00 38.45 3.18
2425 3551 5.293814 CAGAAAAATGCAAACACCAATGTCA 59.706 36.000 0.00 0.00 38.45 3.58
2426 3552 5.523188 TCAGAAAAATGCAAACACCAATGTC 59.477 36.000 0.00 0.00 38.45 3.06
2427 3553 5.426504 TCAGAAAAATGCAAACACCAATGT 58.573 33.333 0.00 0.00 42.46 2.71
2428 3554 5.987777 TCAGAAAAATGCAAACACCAATG 57.012 34.783 0.00 0.00 0.00 2.82
2429 3555 7.571080 AATTCAGAAAAATGCAAACACCAAT 57.429 28.000 0.00 0.00 0.00 3.16
2431 3557 6.998968 AAATTCAGAAAAATGCAAACACCA 57.001 29.167 0.00 0.00 0.00 4.17
2474 3600 4.335416 GTCTTCTTCCCATTGAATCCACA 58.665 43.478 0.00 0.00 31.06 4.17
2475 3601 3.375299 CGTCTTCTTCCCATTGAATCCAC 59.625 47.826 0.00 0.00 31.06 4.02
2478 3604 3.274288 AGCGTCTTCTTCCCATTGAATC 58.726 45.455 0.00 0.00 31.06 2.52
2479 3605 3.356529 AGCGTCTTCTTCCCATTGAAT 57.643 42.857 0.00 0.00 31.06 2.57
2489 3615 5.637810 TCATAATCGACAAAAGCGTCTTCTT 59.362 36.000 0.00 0.00 33.54 2.52
2498 3624 4.600012 ACGCCTTCATAATCGACAAAAG 57.400 40.909 0.00 0.00 0.00 2.27
2500 3626 4.214545 ACAAACGCCTTCATAATCGACAAA 59.785 37.500 0.00 0.00 0.00 2.83
2501 3627 3.749088 ACAAACGCCTTCATAATCGACAA 59.251 39.130 0.00 0.00 0.00 3.18
2502 3628 3.124466 CACAAACGCCTTCATAATCGACA 59.876 43.478 0.00 0.00 0.00 4.35
2517 3643 1.282817 TGTCGAACTCACCACAAACG 58.717 50.000 0.00 0.00 0.00 3.60
2520 3646 2.869801 GTGATTGTCGAACTCACCACAA 59.130 45.455 10.60 0.00 34.55 3.33
2526 3652 5.469760 ACATCATTTGTGATTGTCGAACTCA 59.530 36.000 0.00 0.00 37.11 3.41
2528 3654 5.947228 ACATCATTTGTGATTGTCGAACT 57.053 34.783 0.00 0.00 37.11 3.01
2560 3686 2.554893 CCTATAAGCACCTCCGAGAGAC 59.445 54.545 0.00 0.00 0.00 3.36
2564 3690 0.969894 CCCCTATAAGCACCTCCGAG 59.030 60.000 0.00 0.00 0.00 4.63
2588 3714 4.269183 TGGATTCGTGCAATTTACTCCAT 58.731 39.130 0.00 0.00 0.00 3.41
2607 3733 2.912956 ACCTAGCCTTCAAAGTGATGGA 59.087 45.455 12.93 0.00 42.46 3.41
2669 3800 7.013178 TCTGCAAAAACATTACTGAAGACATGA 59.987 33.333 0.00 0.00 0.00 3.07
2694 3826 1.327764 GATCCGCCGATCAGTGTTTTC 59.672 52.381 9.80 0.00 43.87 2.29
2752 3884 2.404995 GCCATGTCAGCCTCACTGC 61.405 63.158 0.00 0.00 46.76 4.40
2757 3889 0.682209 ATTGGTGCCATGTCAGCCTC 60.682 55.000 3.16 0.00 33.82 4.70
2780 3912 3.064207 ACGATTTCATGTAACGCTGTGT 58.936 40.909 0.00 0.00 0.00 3.72
2785 3917 3.488489 AGCAAACGATTTCATGTAACGC 58.512 40.909 0.00 0.00 0.00 4.84
2990 4125 4.457496 CGACGCCAGTGCTCCCAT 62.457 66.667 0.00 0.00 34.43 4.00
3110 4248 4.996793 TCCTCAAATCTTCAAATCCACCA 58.003 39.130 0.00 0.00 0.00 4.17
3111 4249 4.142293 GCTCCTCAAATCTTCAAATCCACC 60.142 45.833 0.00 0.00 0.00 4.61
3112 4250 4.704057 AGCTCCTCAAATCTTCAAATCCAC 59.296 41.667 0.00 0.00 0.00 4.02
3113 4251 4.927049 AGCTCCTCAAATCTTCAAATCCA 58.073 39.130 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.