Multiple sequence alignment - TraesCS4B01G325500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G325500 chr4B 100.000 5565 0 0 1 5565 616310581 616305017 0.000000e+00 10277.0
1 TraesCS4B01G325500 chr4D 92.272 3274 155 48 96 3318 484407058 484403832 0.000000e+00 4554.0
2 TraesCS4B01G325500 chr4D 91.167 1268 85 21 3376 4629 484403818 484402564 0.000000e+00 1696.0
3 TraesCS4B01G325500 chr4D 89.062 896 50 31 4710 5565 484402500 484401613 0.000000e+00 1068.0
4 TraesCS4B01G325500 chr4D 100.000 44 0 0 38 81 484407097 484407054 1.280000e-11 82.4
5 TraesCS4B01G325500 chr5A 91.824 3339 158 44 38 3336 664813857 664810594 0.000000e+00 4547.0
6 TraesCS4B01G325500 chr5A 90.778 1247 90 17 3399 4629 664810590 664809353 0.000000e+00 1642.0
7 TraesCS4B01G325500 chr5A 85.017 901 58 37 4710 5565 664809289 664808421 0.000000e+00 845.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G325500 chr4B 616305017 616310581 5564 True 10277.000000 10277 100.000000 1 5565 1 chr4B.!!$R1 5564
1 TraesCS4B01G325500 chr4D 484401613 484407097 5484 True 1850.100000 4554 93.125250 38 5565 4 chr4D.!!$R1 5527
2 TraesCS4B01G325500 chr5A 664808421 664813857 5436 True 2344.666667 4547 89.206333 38 5565 3 chr5A.!!$R1 5527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
367 385 0.249784 CGATCTGATCTGGTGGCCTG 60.250 60.0 15.16 0.0 0.00 4.85 F
368 386 0.534652 GATCTGATCTGGTGGCCTGC 60.535 60.0 10.37 0.0 0.00 4.85 F
435 477 0.749649 CTCCGTGGGGAAGATGAGAG 59.250 60.0 0.00 0.0 43.27 3.20 F
1931 2016 0.107459 ATCAGCCTTTTCGCTCCTCC 60.107 55.0 0.00 0.0 36.82 4.30 F
2071 2160 0.390860 TTCATGGTTGTTTTGCGGGG 59.609 50.0 0.00 0.0 0.00 5.73 F
3511 3605 0.097674 GTGCGTTATCAAGCAGGCAG 59.902 55.0 0.00 0.0 44.70 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1812 1887 0.171679 TGATACGCACGGTTGTCGAT 59.828 50.0 0.0 0.0 42.43 3.59 R
1813 1888 0.171679 ATGATACGCACGGTTGTCGA 59.828 50.0 0.0 0.0 42.43 4.20 R
2177 2269 0.674895 ATGGGTCTCGCAAACAGCTC 60.675 55.0 0.0 0.0 42.61 4.09 R
3493 3587 0.036483 TCTGCCTGCTTGATAACGCA 60.036 50.0 0.0 0.0 34.54 5.24 R
3685 3792 0.252057 TAGTAGGGCACACTGGAGCA 60.252 55.0 0.0 0.0 31.64 4.26 R
5376 5520 0.034574 TTATGCACCATTGACGGCCT 60.035 50.0 0.0 0.0 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.000727 CGTCCTCAAGTACAAATCCACC 58.999 50.000 0.00 0.00 0.00 4.61
22 23 3.556213 CGTCCTCAAGTACAAATCCACCA 60.556 47.826 0.00 0.00 0.00 4.17
23 24 3.751698 GTCCTCAAGTACAAATCCACCAC 59.248 47.826 0.00 0.00 0.00 4.16
24 25 3.081804 CCTCAAGTACAAATCCACCACC 58.918 50.000 0.00 0.00 0.00 4.61
25 26 3.081804 CTCAAGTACAAATCCACCACCC 58.918 50.000 0.00 0.00 0.00 4.61
26 27 2.167662 CAAGTACAAATCCACCACCCC 58.832 52.381 0.00 0.00 0.00 4.95
27 28 0.702316 AGTACAAATCCACCACCCCC 59.298 55.000 0.00 0.00 0.00 5.40
28 29 0.406361 GTACAAATCCACCACCCCCA 59.594 55.000 0.00 0.00 0.00 4.96
29 30 0.406361 TACAAATCCACCACCCCCAC 59.594 55.000 0.00 0.00 0.00 4.61
30 31 1.609210 CAAATCCACCACCCCCACC 60.609 63.158 0.00 0.00 0.00 4.61
31 32 2.863970 AAATCCACCACCCCCACCC 61.864 63.158 0.00 0.00 0.00 4.61
81 82 0.252558 AACCCACATCCTCCCGTACT 60.253 55.000 0.00 0.00 0.00 2.73
82 83 0.632835 ACCCACATCCTCCCGTACTA 59.367 55.000 0.00 0.00 0.00 1.82
83 84 1.038280 CCCACATCCTCCCGTACTAC 58.962 60.000 0.00 0.00 0.00 2.73
84 85 1.411216 CCCACATCCTCCCGTACTACT 60.411 57.143 0.00 0.00 0.00 2.57
85 86 1.955080 CCACATCCTCCCGTACTACTC 59.045 57.143 0.00 0.00 0.00 2.59
86 87 2.423088 CCACATCCTCCCGTACTACTCT 60.423 54.545 0.00 0.00 0.00 3.24
87 88 3.181447 CCACATCCTCCCGTACTACTCTA 60.181 52.174 0.00 0.00 0.00 2.43
88 89 3.814283 CACATCCTCCCGTACTACTCTAC 59.186 52.174 0.00 0.00 0.00 2.59
89 90 3.715834 ACATCCTCCCGTACTACTCTACT 59.284 47.826 0.00 0.00 0.00 2.57
90 91 4.904251 ACATCCTCCCGTACTACTCTACTA 59.096 45.833 0.00 0.00 0.00 1.82
91 92 4.946478 TCCTCCCGTACTACTCTACTAC 57.054 50.000 0.00 0.00 0.00 2.73
92 93 3.319405 TCCTCCCGTACTACTCTACTACG 59.681 52.174 0.00 0.00 34.37 3.51
93 94 3.068873 CCTCCCGTACTACTCTACTACGT 59.931 52.174 0.00 0.00 33.02 3.57
94 95 4.278669 CCTCCCGTACTACTCTACTACGTA 59.721 50.000 0.00 0.00 33.02 3.57
95 96 5.184340 TCCCGTACTACTCTACTACGTAC 57.816 47.826 0.00 0.00 33.02 3.67
195 208 2.572284 GCACCGCGTACTCCTTCT 59.428 61.111 4.92 0.00 0.00 2.85
196 209 1.516603 GCACCGCGTACTCCTTCTC 60.517 63.158 4.92 0.00 0.00 2.87
197 210 1.139095 CACCGCGTACTCCTTCTCC 59.861 63.158 4.92 0.00 0.00 3.71
198 211 1.001145 ACCGCGTACTCCTTCTCCT 60.001 57.895 4.92 0.00 0.00 3.69
199 212 0.254178 ACCGCGTACTCCTTCTCCTA 59.746 55.000 4.92 0.00 0.00 2.94
200 213 0.945813 CCGCGTACTCCTTCTCCTAG 59.054 60.000 4.92 0.00 0.00 3.02
201 214 1.666054 CGCGTACTCCTTCTCCTAGT 58.334 55.000 0.00 0.00 0.00 2.57
202 215 1.331138 CGCGTACTCCTTCTCCTAGTG 59.669 57.143 0.00 0.00 0.00 2.74
203 216 1.065851 GCGTACTCCTTCTCCTAGTGC 59.934 57.143 0.00 0.00 0.00 4.40
204 217 1.677052 CGTACTCCTTCTCCTAGTGCC 59.323 57.143 0.00 0.00 0.00 5.01
264 277 2.257894 CTCATCGACTGACTGCTTGTC 58.742 52.381 0.00 3.95 45.54 3.18
360 378 2.356793 GCGCCCGATCTGATCTGG 60.357 66.667 20.12 20.12 36.81 3.86
361 379 3.133014 CGCCCGATCTGATCTGGT 58.867 61.111 23.55 0.00 36.20 4.00
362 380 1.300465 CGCCCGATCTGATCTGGTG 60.300 63.158 23.55 22.69 37.72 4.17
363 381 1.070445 GCCCGATCTGATCTGGTGG 59.930 63.158 23.55 13.86 36.20 4.61
364 382 1.070445 CCCGATCTGATCTGGTGGC 59.930 63.158 17.19 0.00 0.00 5.01
367 385 0.249784 CGATCTGATCTGGTGGCCTG 60.250 60.000 15.16 0.00 0.00 4.85
368 386 0.534652 GATCTGATCTGGTGGCCTGC 60.535 60.000 10.37 0.00 0.00 4.85
369 387 0.987081 ATCTGATCTGGTGGCCTGCT 60.987 55.000 3.32 0.00 0.00 4.24
370 388 1.153208 CTGATCTGGTGGCCTGCTC 60.153 63.158 3.32 0.00 0.00 4.26
371 389 1.614525 TGATCTGGTGGCCTGCTCT 60.615 57.895 3.32 0.00 0.00 4.09
372 390 1.153208 GATCTGGTGGCCTGCTCTG 60.153 63.158 3.32 0.00 0.00 3.35
373 391 2.605854 GATCTGGTGGCCTGCTCTGG 62.606 65.000 3.32 0.00 0.00 3.86
374 392 3.644606 CTGGTGGCCTGCTCTGGT 61.645 66.667 3.32 0.00 0.00 4.00
390 408 2.940410 TCTGGTGTTTCCTTGTCGTTTC 59.060 45.455 0.00 0.00 37.07 2.78
395 413 2.946990 TGTTTCCTTGTCGTTTCCTTCC 59.053 45.455 0.00 0.00 0.00 3.46
398 416 1.346722 TCCTTGTCGTTTCCTTCCTCC 59.653 52.381 0.00 0.00 0.00 4.30
399 417 1.348036 CCTTGTCGTTTCCTTCCTCCT 59.652 52.381 0.00 0.00 0.00 3.69
414 448 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
415 449 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
430 472 1.383248 CCTCCTCCGTGGGGAAGAT 60.383 63.158 0.00 0.00 43.27 2.40
435 477 0.749649 CTCCGTGGGGAAGATGAGAG 59.250 60.000 0.00 0.00 43.27 3.20
566 611 2.844839 CCGGGGAGGGAGGCTTAG 60.845 72.222 0.00 0.00 35.97 2.18
570 615 1.383248 GGGAGGGAGGCTTAGCTGA 60.383 63.158 3.59 0.00 0.00 4.26
660 710 2.125912 GCTGACGGCGATGTGTCT 60.126 61.111 16.62 0.00 36.10 3.41
669 719 3.122150 CGATGTGTCTCGCTTTCCA 57.878 52.632 0.00 0.00 0.00 3.53
675 734 2.289631 TGTGTCTCGCTTTCCATGATGT 60.290 45.455 0.00 0.00 0.00 3.06
846 905 3.722555 TTGCATCGTGACGAGATTTTC 57.277 42.857 14.71 0.00 39.91 2.29
860 919 4.161377 CGAGATTTTCCCTCTCCTCTCTTT 59.839 45.833 0.00 0.00 36.59 2.52
1518 1593 3.444805 GACGAGACCTCCTGCGCT 61.445 66.667 9.73 0.00 0.00 5.92
1786 1861 3.495629 GGTAGAGATCATGGCTCATTGCA 60.496 47.826 15.68 0.00 45.15 4.08
1798 1873 2.756760 GCTCATTGCAAATCCCTTCTCA 59.243 45.455 1.71 0.00 42.31 3.27
1801 1876 5.068198 GCTCATTGCAAATCCCTTCTCATTA 59.932 40.000 1.71 0.00 42.31 1.90
1803 1878 5.951148 TCATTGCAAATCCCTTCTCATTACA 59.049 36.000 1.71 0.00 0.00 2.41
1804 1879 6.436847 TCATTGCAAATCCCTTCTCATTACAA 59.563 34.615 1.71 0.00 0.00 2.41
1805 1880 5.643379 TGCAAATCCCTTCTCATTACAAC 57.357 39.130 0.00 0.00 0.00 3.32
1806 1881 4.155826 TGCAAATCCCTTCTCATTACAACG 59.844 41.667 0.00 0.00 0.00 4.10
1808 1883 2.396590 TCCCTTCTCATTACAACGCC 57.603 50.000 0.00 0.00 0.00 5.68
1809 1884 1.006832 CCCTTCTCATTACAACGCCG 58.993 55.000 0.00 0.00 0.00 6.46
1810 1885 1.404986 CCCTTCTCATTACAACGCCGA 60.405 52.381 0.00 0.00 0.00 5.54
1811 1886 1.927174 CCTTCTCATTACAACGCCGAG 59.073 52.381 0.00 0.00 0.00 4.63
1812 1887 2.416836 CCTTCTCATTACAACGCCGAGA 60.417 50.000 0.00 0.00 0.00 4.04
1813 1888 3.448686 CTTCTCATTACAACGCCGAGAT 58.551 45.455 0.00 0.00 33.02 2.75
1815 1890 1.781429 CTCATTACAACGCCGAGATCG 59.219 52.381 0.00 0.00 39.44 3.69
1817 1892 1.517276 CATTACAACGCCGAGATCGAC 59.483 52.381 3.31 0.00 43.02 4.20
1818 1893 0.522626 TTACAACGCCGAGATCGACA 59.477 50.000 3.31 0.00 43.02 4.35
1926 2011 2.673368 CGAAGTAATCAGCCTTTTCGCT 59.327 45.455 0.00 0.00 40.65 4.93
1931 2016 0.107459 ATCAGCCTTTTCGCTCCTCC 60.107 55.000 0.00 0.00 36.82 4.30
2070 2159 1.068434 AGTTCATGGTTGTTTTGCGGG 59.932 47.619 0.00 0.00 0.00 6.13
2071 2160 0.390860 TTCATGGTTGTTTTGCGGGG 59.609 50.000 0.00 0.00 0.00 5.73
2072 2161 0.757188 TCATGGTTGTTTTGCGGGGT 60.757 50.000 0.00 0.00 0.00 4.95
2093 2182 4.261447 GGTAATGCCGAAATGTTGGTATCC 60.261 45.833 0.00 0.00 29.66 2.59
2096 2185 1.676006 GCCGAAATGTTGGTATCCCTG 59.324 52.381 0.00 0.00 0.00 4.45
2102 2191 5.820423 CGAAATGTTGGTATCCCTGACATAA 59.180 40.000 0.00 0.00 37.28 1.90
2128 2220 3.286353 TGCTTCATTTGTTGTCAGGTGA 58.714 40.909 0.00 0.00 0.00 4.02
2134 2226 4.392754 TCATTTGTTGTCAGGTGATCGATG 59.607 41.667 0.54 0.00 0.00 3.84
2140 2232 0.465705 TCAGGTGATCGATGCTTCCC 59.534 55.000 0.54 0.00 0.00 3.97
2161 2253 1.009829 CCGAGCAATTGTACCAGAGC 58.990 55.000 7.40 0.00 0.00 4.09
2165 2257 1.276421 AGCAATTGTACCAGAGCTCGT 59.724 47.619 8.37 3.61 0.00 4.18
2166 2258 2.076863 GCAATTGTACCAGAGCTCGTT 58.923 47.619 8.37 0.00 0.00 3.85
2176 2268 2.266554 CAGAGCTCGTTCATGTTCTCC 58.733 52.381 8.37 0.00 0.00 3.71
2177 2269 1.135257 AGAGCTCGTTCATGTTCTCCG 60.135 52.381 8.37 0.00 0.00 4.63
2187 2279 1.135859 CATGTTCTCCGAGCTGTTTGC 60.136 52.381 0.00 0.00 43.29 3.68
2594 2686 5.238214 GCATAAATAGTGAAGAGCAAGGGAG 59.762 44.000 0.00 0.00 0.00 4.30
2637 2729 1.098050 CCATACAACAAGCCTCCTGC 58.902 55.000 0.00 0.00 41.71 4.85
2676 2768 2.411547 CGTGAAAGAACTGGCGAATGAC 60.412 50.000 0.00 0.00 0.00 3.06
2689 2781 1.869754 CGAATGACGGATCGCCTGAAT 60.870 52.381 0.00 0.00 38.46 2.57
2700 2792 1.663074 GCCTGAATCTAGCTCGCCG 60.663 63.158 0.00 0.00 0.00 6.46
2763 2855 2.630098 TGAGCTCCATACTAGTGGCATC 59.370 50.000 12.15 0.00 39.19 3.91
2846 2938 4.521146 AGCCTTGTGGATGTTCAGAATAG 58.479 43.478 0.00 0.00 34.57 1.73
2984 3076 8.857098 AGATAAAAGTTTCTTTCCAGGGTTTAC 58.143 33.333 0.00 0.00 0.00 2.01
2985 3077 6.860790 AAAAGTTTCTTTCCAGGGTTTACA 57.139 33.333 0.00 0.00 0.00 2.41
3005 3097 8.462016 GTTTACAAAGCATGAAGAATATGAGGT 58.538 33.333 0.00 0.00 0.00 3.85
3048 3140 2.189342 GATCGAAGCCTCTCAAACTCG 58.811 52.381 0.00 0.00 0.00 4.18
3056 3148 2.807108 GCCTCTCAAACTCGGACAAAGT 60.807 50.000 0.00 0.00 0.00 2.66
3109 3201 2.104792 ACTGTGAGCCTGCAAGAACTTA 59.895 45.455 0.00 0.00 34.07 2.24
3239 3331 3.243401 ACTTGCATTTTCTCGGTTTGGAC 60.243 43.478 0.00 0.00 0.00 4.02
3262 3354 7.542534 ACGAGTAGTCAGTAGATTTAGACAG 57.457 40.000 0.00 0.00 33.56 3.51
3274 3366 8.940952 AGTAGATTTAGACAGCTTGCTAAAAAG 58.059 33.333 17.15 0.00 39.29 2.27
3275 3367 7.751768 AGATTTAGACAGCTTGCTAAAAAGT 57.248 32.000 17.15 5.91 39.29 2.66
3285 3377 2.103373 TGCTAAAAAGTTGGCACCACA 58.897 42.857 0.00 0.00 45.28 4.17
3286 3378 2.100584 TGCTAAAAAGTTGGCACCACAG 59.899 45.455 0.00 0.00 45.28 3.66
3291 3383 1.101049 AAGTTGGCACCACAGTTCCG 61.101 55.000 0.00 0.00 30.83 4.30
3307 3399 4.038402 CAGTTCCGTCCTAATACCCGTATT 59.962 45.833 5.48 5.48 39.02 1.89
3323 3415 6.470278 ACCCGTATTTTTACTTGAGTAGCTT 58.530 36.000 0.00 0.00 0.00 3.74
3325 3417 8.262933 ACCCGTATTTTTACTTGAGTAGCTTAT 58.737 33.333 0.00 0.00 0.00 1.73
3335 3427 7.736447 ACTTGAGTAGCTTATATTGGATTGC 57.264 36.000 0.00 0.00 0.00 3.56
3336 3428 7.282585 ACTTGAGTAGCTTATATTGGATTGCA 58.717 34.615 0.00 0.00 0.00 4.08
3337 3429 7.443575 ACTTGAGTAGCTTATATTGGATTGCAG 59.556 37.037 0.00 0.00 0.00 4.41
3338 3430 6.830912 TGAGTAGCTTATATTGGATTGCAGT 58.169 36.000 0.00 0.00 0.00 4.40
3339 3431 7.962441 TGAGTAGCTTATATTGGATTGCAGTA 58.038 34.615 0.00 0.00 0.00 2.74
3340 3432 8.428852 TGAGTAGCTTATATTGGATTGCAGTAA 58.571 33.333 0.00 0.00 0.00 2.24
3341 3433 9.442047 GAGTAGCTTATATTGGATTGCAGTAAT 57.558 33.333 0.00 0.00 0.00 1.89
3342 3434 9.799106 AGTAGCTTATATTGGATTGCAGTAATT 57.201 29.630 0.00 0.00 0.00 1.40
3343 3435 9.831737 GTAGCTTATATTGGATTGCAGTAATTG 57.168 33.333 0.00 0.00 0.00 2.32
3344 3436 8.469309 AGCTTATATTGGATTGCAGTAATTGT 57.531 30.769 0.00 0.00 0.00 2.71
3345 3437 8.355169 AGCTTATATTGGATTGCAGTAATTGTG 58.645 33.333 0.00 0.00 0.00 3.33
3346 3438 7.115378 GCTTATATTGGATTGCAGTAATTGTGC 59.885 37.037 7.49 7.49 41.59 4.57
3347 3439 6.720112 ATATTGGATTGCAGTAATTGTGCT 57.280 33.333 13.84 0.00 41.78 4.40
3348 3440 7.822161 ATATTGGATTGCAGTAATTGTGCTA 57.178 32.000 13.84 8.24 41.78 3.49
3349 3441 5.973899 TTGGATTGCAGTAATTGTGCTAA 57.026 34.783 13.84 8.29 41.78 3.09
3350 3442 5.565592 TGGATTGCAGTAATTGTGCTAAG 57.434 39.130 13.84 0.00 41.78 2.18
3351 3443 5.009631 TGGATTGCAGTAATTGTGCTAAGT 58.990 37.500 13.84 0.83 41.78 2.24
3352 3444 5.476599 TGGATTGCAGTAATTGTGCTAAGTT 59.523 36.000 13.84 0.00 41.78 2.66
3353 3445 6.015519 TGGATTGCAGTAATTGTGCTAAGTTT 60.016 34.615 13.84 0.00 41.78 2.66
3354 3446 6.868339 GGATTGCAGTAATTGTGCTAAGTTTT 59.132 34.615 13.84 0.00 41.78 2.43
3355 3447 8.026607 GGATTGCAGTAATTGTGCTAAGTTTTA 58.973 33.333 13.84 0.00 41.78 1.52
3356 3448 8.970691 ATTGCAGTAATTGTGCTAAGTTTTAG 57.029 30.769 13.84 0.00 41.78 1.85
3357 3449 6.908825 TGCAGTAATTGTGCTAAGTTTTAGG 58.091 36.000 13.84 0.00 41.78 2.69
3358 3450 6.712998 TGCAGTAATTGTGCTAAGTTTTAGGA 59.287 34.615 13.84 0.00 41.78 2.94
3359 3451 7.393234 TGCAGTAATTGTGCTAAGTTTTAGGAT 59.607 33.333 13.84 0.00 41.78 3.24
3360 3452 7.910683 GCAGTAATTGTGCTAAGTTTTAGGATC 59.089 37.037 7.24 0.00 37.96 3.36
3361 3453 9.167311 CAGTAATTGTGCTAAGTTTTAGGATCT 57.833 33.333 0.00 0.00 0.00 2.75
3365 3457 9.515226 AATTGTGCTAAGTTTTAGGATCTAACA 57.485 29.630 0.00 0.00 0.00 2.41
3366 3458 9.686683 ATTGTGCTAAGTTTTAGGATCTAACAT 57.313 29.630 0.00 0.00 0.00 2.71
3368 3460 9.817809 TGTGCTAAGTTTTAGGATCTAACATAG 57.182 33.333 0.00 0.00 0.00 2.23
3393 3485 7.934120 AGATAAGAAGTGTATAATTGGGCTGTC 59.066 37.037 0.00 0.00 0.00 3.51
3394 3486 5.700402 AGAAGTGTATAATTGGGCTGTCT 57.300 39.130 0.00 0.00 0.00 3.41
3397 3489 3.200825 AGTGTATAATTGGGCTGTCTGCT 59.799 43.478 1.44 0.00 42.39 4.24
3410 3502 2.745821 CTGTCTGCTTCTTGCTATGCAA 59.254 45.455 4.87 4.87 46.80 4.08
3411 3503 6.219381 GCTGTCTGCTTCTTGCTATGCAAT 62.219 45.833 5.42 0.00 42.33 3.56
3425 3517 2.747396 TGCAATGGCCAGATTTTGTC 57.253 45.000 13.05 7.79 40.13 3.18
3428 3520 2.027837 GCAATGGCCAGATTTTGTCCTT 60.028 45.455 13.05 0.00 0.00 3.36
3434 3526 3.448660 GGCCAGATTTTGTCCTTATTGCT 59.551 43.478 0.00 0.00 0.00 3.91
3442 3534 8.462016 AGATTTTGTCCTTATTGCTGTTGTATC 58.538 33.333 0.00 0.00 0.00 2.24
3447 3539 4.100344 TCCTTATTGCTGTTGTATCGCCTA 59.900 41.667 0.00 0.00 0.00 3.93
3451 3543 3.371102 TGCTGTTGTATCGCCTAGATC 57.629 47.619 0.00 0.00 40.66 2.75
3452 3544 2.693074 TGCTGTTGTATCGCCTAGATCA 59.307 45.455 0.00 0.00 40.66 2.92
3453 3545 3.132111 TGCTGTTGTATCGCCTAGATCAA 59.868 43.478 0.00 0.00 40.66 2.57
3454 3546 3.491267 GCTGTTGTATCGCCTAGATCAAC 59.509 47.826 0.00 12.23 41.84 3.18
3455 3547 3.702330 TGTTGTATCGCCTAGATCAACG 58.298 45.455 0.00 0.00 42.94 4.10
3456 3548 3.129813 TGTTGTATCGCCTAGATCAACGT 59.870 43.478 0.00 0.00 42.94 3.99
3458 3550 4.380841 TGTATCGCCTAGATCAACGTTT 57.619 40.909 0.00 0.00 40.66 3.60
3462 3556 4.025015 TCGCCTAGATCAACGTTTAGTC 57.975 45.455 0.00 0.00 0.00 2.59
3468 3562 7.806487 CGCCTAGATCAACGTTTAGTCAATATA 59.194 37.037 0.00 0.00 0.00 0.86
3469 3563 9.640963 GCCTAGATCAACGTTTAGTCAATATAT 57.359 33.333 0.00 0.00 0.00 0.86
3495 3589 3.255888 CCTTTACCAGAAAAAGGGAGTGC 59.744 47.826 6.70 0.00 46.17 4.40
3496 3590 2.178912 TACCAGAAAAAGGGAGTGCG 57.821 50.000 0.00 0.00 0.00 5.34
3497 3591 0.182775 ACCAGAAAAAGGGAGTGCGT 59.817 50.000 0.00 0.00 0.00 5.24
3498 3592 1.318576 CCAGAAAAAGGGAGTGCGTT 58.681 50.000 0.00 0.00 0.00 4.84
3499 3593 2.158726 ACCAGAAAAAGGGAGTGCGTTA 60.159 45.455 0.00 0.00 0.00 3.18
3500 3594 3.081804 CCAGAAAAAGGGAGTGCGTTAT 58.918 45.455 0.00 0.00 0.00 1.89
3501 3595 3.127030 CCAGAAAAAGGGAGTGCGTTATC 59.873 47.826 0.00 0.00 0.00 1.75
3502 3596 3.751175 CAGAAAAAGGGAGTGCGTTATCA 59.249 43.478 0.00 0.00 0.00 2.15
3503 3597 4.215399 CAGAAAAAGGGAGTGCGTTATCAA 59.785 41.667 0.00 0.00 0.00 2.57
3504 3598 4.455877 AGAAAAAGGGAGTGCGTTATCAAG 59.544 41.667 0.00 0.00 0.00 3.02
3505 3599 1.739067 AAGGGAGTGCGTTATCAAGC 58.261 50.000 0.00 0.00 0.00 4.01
3507 3601 1.009829 GGGAGTGCGTTATCAAGCAG 58.990 55.000 0.00 0.00 44.70 4.24
3508 3602 1.009829 GGAGTGCGTTATCAAGCAGG 58.990 55.000 0.00 0.00 44.70 4.85
3509 3603 0.375106 GAGTGCGTTATCAAGCAGGC 59.625 55.000 0.00 0.00 44.70 4.85
3510 3604 0.321564 AGTGCGTTATCAAGCAGGCA 60.322 50.000 0.00 0.00 44.70 4.75
3511 3605 0.097674 GTGCGTTATCAAGCAGGCAG 59.902 55.000 0.00 0.00 44.70 4.85
3513 3607 1.303309 GCGTTATCAAGCAGGCAGAT 58.697 50.000 0.00 0.00 0.00 2.90
3514 3608 1.672881 GCGTTATCAAGCAGGCAGATT 59.327 47.619 4.89 0.00 0.00 2.40
3515 3609 2.098117 GCGTTATCAAGCAGGCAGATTT 59.902 45.455 4.89 0.00 0.00 2.17
3519 3613 3.939740 ATCAAGCAGGCAGATTTAGGA 57.060 42.857 0.00 0.00 0.00 2.94
3522 3616 3.084039 CAAGCAGGCAGATTTAGGAACA 58.916 45.455 0.00 0.00 0.00 3.18
3523 3617 2.996631 AGCAGGCAGATTTAGGAACAG 58.003 47.619 0.00 0.00 0.00 3.16
3524 3618 2.573462 AGCAGGCAGATTTAGGAACAGA 59.427 45.455 0.00 0.00 0.00 3.41
3525 3619 2.680339 GCAGGCAGATTTAGGAACAGAC 59.320 50.000 0.00 0.00 0.00 3.51
3526 3620 3.620966 GCAGGCAGATTTAGGAACAGACT 60.621 47.826 0.00 0.00 0.00 3.24
3527 3621 4.583871 CAGGCAGATTTAGGAACAGACTT 58.416 43.478 0.00 0.00 0.00 3.01
3528 3622 4.633565 CAGGCAGATTTAGGAACAGACTTC 59.366 45.833 0.00 0.00 0.00 3.01
3576 3682 1.579698 AGCTGACGCTGATATTGCAG 58.420 50.000 0.00 0.00 46.86 4.41
3597 3703 2.288030 GCAGCTTGCAACTGAAAGACAT 60.288 45.455 24.19 0.00 44.26 3.06
3622 3728 6.591935 ACTGGTCTTGTTTCTTCATTGACTA 58.408 36.000 0.00 0.00 0.00 2.59
3627 3733 7.327032 GGTCTTGTTTCTTCATTGACTATTTGC 59.673 37.037 0.00 0.00 0.00 3.68
3636 3742 9.797642 TCTTCATTGACTATTTGCCATACATAT 57.202 29.630 0.00 0.00 0.00 1.78
3646 3752 5.766150 TTGCCATACATATAAACTGCCAC 57.234 39.130 0.00 0.00 0.00 5.01
3650 3756 5.299279 GCCATACATATAAACTGCCACTGTT 59.701 40.000 0.00 0.00 0.00 3.16
3654 3760 9.882996 CATACATATAAACTGCCACTGTTTATG 57.117 33.333 22.39 15.96 43.25 1.90
3665 3771 9.547753 ACTGCCACTGTTTATGATTAACTATAG 57.452 33.333 0.00 0.00 0.00 1.31
3781 3888 2.810852 CAAGAAAGTTGGGCACTCTCTC 59.189 50.000 0.00 0.00 32.94 3.20
3808 3915 7.162761 AGAAATTGCAAATGGTCATTGATTCA 58.837 30.769 1.71 0.00 0.00 2.57
3853 3960 1.202302 CGGCTGAGTTCGCTCTATGAA 60.202 52.381 0.00 0.00 44.38 2.57
3883 3990 4.256920 CCAAGACTACATGGTCAGAAAGG 58.743 47.826 0.00 0.00 38.57 3.11
3994 4101 3.536917 CCGCATACCTCCGGCTCA 61.537 66.667 0.00 0.00 37.85 4.26
4007 4114 0.543749 CGGCTCAAATTCCCTCTCCT 59.456 55.000 0.00 0.00 0.00 3.69
4045 4152 3.350833 CTCAAATTCTAGCCTTGGCTGT 58.649 45.455 23.03 1.48 0.00 4.40
4132 4239 3.834489 TTCATGGAGGAGAATCAGAGC 57.166 47.619 0.00 0.00 36.25 4.09
4159 4266 0.107312 AGATGAAAGCTGCGAGCCAT 60.107 50.000 4.77 0.00 43.77 4.40
4192 4299 5.163784 GCGGTTATTTACTGAAGAGAAACCC 60.164 44.000 0.00 0.00 34.90 4.11
4297 4404 7.171337 GCTAAGCCTGATTCTCTCAAGATAAAG 59.829 40.741 0.00 0.00 32.14 1.85
4395 4502 0.605319 AAGCGGTTCGGCATTTCTCA 60.605 50.000 0.00 0.00 34.64 3.27
4510 4617 5.931441 AGTCATCAAGTGCTAAAACAGTC 57.069 39.130 0.00 0.00 0.00 3.51
4541 4648 1.071542 TGAATCCTGCAGTTCAACCGA 59.928 47.619 15.31 3.48 31.85 4.69
4565 4672 1.150827 CCGTGGTTCCTTCGGTTAAC 58.849 55.000 13.98 0.00 39.51 2.01
4591 4698 6.122782 CGATGTATACAATGCTTCTTCAACG 58.877 40.000 10.14 0.00 0.00 4.10
4594 4701 6.827641 TGTATACAATGCTTCTTCAACGTTC 58.172 36.000 2.20 0.00 0.00 3.95
4599 4706 5.866633 ACAATGCTTCTTCAACGTTCAAAAA 59.133 32.000 0.00 0.00 0.00 1.94
4600 4707 5.949233 ATGCTTCTTCAACGTTCAAAAAC 57.051 34.783 0.00 0.00 0.00 2.43
4602 4709 5.223382 TGCTTCTTCAACGTTCAAAAACAA 58.777 33.333 0.00 0.00 34.93 2.83
4604 4711 5.444087 GCTTCTTCAACGTTCAAAAACAACC 60.444 40.000 0.00 0.00 34.93 3.77
4605 4712 5.122512 TCTTCAACGTTCAAAAACAACCA 57.877 34.783 0.00 0.00 34.93 3.67
4606 4713 5.715070 TCTTCAACGTTCAAAAACAACCAT 58.285 33.333 0.00 0.00 34.93 3.55
4609 4716 3.446310 ACGTTCAAAAACAACCATCCC 57.554 42.857 0.00 0.00 34.93 3.85
4610 4717 2.761208 ACGTTCAAAAACAACCATCCCA 59.239 40.909 0.00 0.00 34.93 4.37
4612 4719 3.462982 GTTCAAAAACAACCATCCCACC 58.537 45.455 0.00 0.00 35.36 4.61
4614 4721 3.379452 TCAAAAACAACCATCCCACCTT 58.621 40.909 0.00 0.00 0.00 3.50
4615 4722 3.777522 TCAAAAACAACCATCCCACCTTT 59.222 39.130 0.00 0.00 0.00 3.11
4616 4723 4.126437 CAAAAACAACCATCCCACCTTTC 58.874 43.478 0.00 0.00 0.00 2.62
4617 4724 2.009681 AACAACCATCCCACCTTTCC 57.990 50.000 0.00 0.00 0.00 3.13
4618 4725 0.856982 ACAACCATCCCACCTTTCCA 59.143 50.000 0.00 0.00 0.00 3.53
4619 4726 1.219213 ACAACCATCCCACCTTTCCAA 59.781 47.619 0.00 0.00 0.00 3.53
4620 4727 1.895131 CAACCATCCCACCTTTCCAAG 59.105 52.381 0.00 0.00 0.00 3.61
4622 4729 2.354328 ACCATCCCACCTTTCCAAGTA 58.646 47.619 0.00 0.00 0.00 2.24
4623 4730 2.308866 ACCATCCCACCTTTCCAAGTAG 59.691 50.000 0.00 0.00 0.00 2.57
4624 4731 2.308866 CCATCCCACCTTTCCAAGTAGT 59.691 50.000 0.00 0.00 0.00 2.73
4625 4732 3.610911 CATCCCACCTTTCCAAGTAGTC 58.389 50.000 0.00 0.00 0.00 2.59
4626 4733 2.696775 TCCCACCTTTCCAAGTAGTCA 58.303 47.619 0.00 0.00 0.00 3.41
4627 4734 2.637872 TCCCACCTTTCCAAGTAGTCAG 59.362 50.000 0.00 0.00 0.00 3.51
4628 4735 2.372172 CCCACCTTTCCAAGTAGTCAGT 59.628 50.000 0.00 0.00 0.00 3.41
4629 4736 3.403038 CCACCTTTCCAAGTAGTCAGTG 58.597 50.000 0.00 0.00 0.00 3.66
4630 4737 3.181454 CCACCTTTCCAAGTAGTCAGTGT 60.181 47.826 0.00 0.00 0.00 3.55
4631 4738 3.809832 CACCTTTCCAAGTAGTCAGTGTG 59.190 47.826 0.00 0.00 0.00 3.82
4632 4739 2.808543 CCTTTCCAAGTAGTCAGTGTGC 59.191 50.000 0.00 0.00 0.00 4.57
4633 4740 2.148916 TTCCAAGTAGTCAGTGTGCG 57.851 50.000 0.00 0.00 0.00 5.34
4634 4741 1.037493 TCCAAGTAGTCAGTGTGCGT 58.963 50.000 0.00 0.00 0.00 5.24
4635 4742 1.411246 TCCAAGTAGTCAGTGTGCGTT 59.589 47.619 0.00 0.00 0.00 4.84
4636 4743 1.526887 CCAAGTAGTCAGTGTGCGTTG 59.473 52.381 0.00 0.00 0.00 4.10
4637 4744 2.469826 CAAGTAGTCAGTGTGCGTTGA 58.530 47.619 0.00 0.00 0.00 3.18
4638 4745 3.059884 CAAGTAGTCAGTGTGCGTTGAT 58.940 45.455 0.00 0.00 0.00 2.57
4639 4746 4.234574 CAAGTAGTCAGTGTGCGTTGATA 58.765 43.478 0.00 0.00 0.00 2.15
4640 4747 4.720649 AGTAGTCAGTGTGCGTTGATAT 57.279 40.909 0.00 0.00 0.00 1.63
4641 4748 4.673441 AGTAGTCAGTGTGCGTTGATATC 58.327 43.478 0.00 0.00 0.00 1.63
4642 4749 2.530177 AGTCAGTGTGCGTTGATATCG 58.470 47.619 0.00 0.00 0.00 2.92
4648 4755 3.538841 GCGTTGATATCGCCTCGG 58.461 61.111 0.00 0.00 46.61 4.63
4649 4756 1.299926 GCGTTGATATCGCCTCGGT 60.300 57.895 0.00 0.00 46.61 4.69
4650 4757 0.874607 GCGTTGATATCGCCTCGGTT 60.875 55.000 0.00 0.00 46.61 4.44
4651 4758 1.567504 CGTTGATATCGCCTCGGTTT 58.432 50.000 0.00 0.00 0.00 3.27
4652 4759 1.931172 CGTTGATATCGCCTCGGTTTT 59.069 47.619 0.00 0.00 0.00 2.43
4653 4760 2.034001 CGTTGATATCGCCTCGGTTTTC 60.034 50.000 0.00 0.00 0.00 2.29
4654 4761 1.847818 TGATATCGCCTCGGTTTTCG 58.152 50.000 0.00 0.00 40.90 3.46
4655 4762 1.137513 GATATCGCCTCGGTTTTCGG 58.862 55.000 0.00 0.00 39.77 4.30
4656 4763 0.462789 ATATCGCCTCGGTTTTCGGT 59.537 50.000 0.00 0.00 39.77 4.69
4657 4764 0.179129 TATCGCCTCGGTTTTCGGTC 60.179 55.000 0.00 0.00 39.77 4.79
4658 4765 2.162338 ATCGCCTCGGTTTTCGGTCA 62.162 55.000 0.00 0.00 39.77 4.02
4659 4766 1.740296 CGCCTCGGTTTTCGGTCAT 60.740 57.895 0.00 0.00 39.77 3.06
4660 4767 1.794222 GCCTCGGTTTTCGGTCATG 59.206 57.895 0.00 0.00 39.77 3.07
4661 4768 1.644786 GCCTCGGTTTTCGGTCATGG 61.645 60.000 0.00 0.00 39.77 3.66
4662 4769 0.321298 CCTCGGTTTTCGGTCATGGT 60.321 55.000 0.00 0.00 39.77 3.55
4663 4770 0.796312 CTCGGTTTTCGGTCATGGTG 59.204 55.000 0.00 0.00 39.77 4.17
4664 4771 0.393448 TCGGTTTTCGGTCATGGTGA 59.607 50.000 0.00 0.00 39.77 4.02
4665 4772 1.002659 TCGGTTTTCGGTCATGGTGAT 59.997 47.619 0.00 0.00 39.77 3.06
4666 4773 2.234168 TCGGTTTTCGGTCATGGTGATA 59.766 45.455 0.00 0.00 39.77 2.15
4674 4781 2.035961 CGGTCATGGTGATAGGTACAGG 59.964 54.545 0.00 0.00 0.00 4.00
4679 4786 1.200519 GGTGATAGGTACAGGCCACA 58.799 55.000 5.01 0.00 0.00 4.17
4704 4811 8.522830 CATTTGTAAATATTTGGAGTCTGTGGT 58.477 33.333 11.05 0.00 0.00 4.16
4706 4813 6.774673 TGTAAATATTTGGAGTCTGTGGTCA 58.225 36.000 11.05 0.00 0.00 4.02
4707 4814 7.227873 TGTAAATATTTGGAGTCTGTGGTCAA 58.772 34.615 11.05 0.00 0.00 3.18
4708 4815 6.824305 AAATATTTGGAGTCTGTGGTCAAG 57.176 37.500 0.00 0.00 0.00 3.02
4787 4912 8.151141 TGTACTTGTAGACTAGGTCATATTCG 57.849 38.462 0.00 0.00 34.60 3.34
4839 4964 6.295719 ACCAAACTAGTGTACAGAATAGGG 57.704 41.667 0.00 0.00 0.00 3.53
4935 5061 4.023291 AGTTCTTTCTGGGCTTGTTTGAA 58.977 39.130 0.00 0.00 0.00 2.69
5027 5157 6.074623 CGTGGAATTGAGAGAATTATGTCTCG 60.075 42.308 0.00 0.00 46.32 4.04
5052 5182 2.665185 ACGGGTCAGTTTGAGCGC 60.665 61.111 0.00 0.00 45.17 5.92
5075 5213 1.261619 CGAAGATGCATCCTTTACGGC 59.738 52.381 23.06 3.33 0.00 5.68
5220 5361 5.721232 TGCAGATGAGTATGATATGAGCAG 58.279 41.667 0.00 0.00 0.00 4.24
5263 5404 7.070183 CAGTAAGAATGCATTCATCGATCAAG 58.930 38.462 34.59 15.09 39.23 3.02
5283 5425 3.779759 AGCTCATCTCTCATGTCGAAAC 58.220 45.455 0.00 0.00 0.00 2.78
5322 5464 3.120060 CCAGATCAGTGAAGGCTTTTTCG 60.120 47.826 0.00 0.00 0.00 3.46
5376 5520 3.162147 AGACTCCTAGACACAGCTTCA 57.838 47.619 0.00 0.00 0.00 3.02
5382 5526 1.185618 TAGACACAGCTTCAGGCCGT 61.186 55.000 0.00 0.00 43.05 5.68
5384 5528 2.031012 CACAGCTTCAGGCCGTCA 59.969 61.111 0.00 0.00 43.05 4.35
5395 5539 0.034574 AGGCCGTCAATGGTGCATAA 60.035 50.000 0.00 0.00 0.00 1.90
5405 5565 6.033831 CGTCAATGGTGCATAAAGATGTTTTC 59.966 38.462 0.00 0.00 35.30 2.29
5406 5566 6.311200 GTCAATGGTGCATAAAGATGTTTTCC 59.689 38.462 0.00 0.00 35.30 3.13
5410 5570 6.825610 TGGTGCATAAAGATGTTTTCCTTTT 58.174 32.000 0.00 0.00 35.30 2.27
5414 5574 7.867403 GTGCATAAAGATGTTTTCCTTTTCTCA 59.133 33.333 0.00 0.00 35.30 3.27
5455 5615 7.373493 AGAACAATGGAATGCTAGAGTTTTTG 58.627 34.615 0.00 0.00 0.00 2.44
5456 5616 6.029346 ACAATGGAATGCTAGAGTTTTTGG 57.971 37.500 0.00 0.00 0.00 3.28
5457 5617 5.774690 ACAATGGAATGCTAGAGTTTTTGGA 59.225 36.000 0.00 0.00 0.00 3.53
5459 5619 4.335416 TGGAATGCTAGAGTTTTTGGAGG 58.665 43.478 0.00 0.00 0.00 4.30
5460 5620 4.202567 TGGAATGCTAGAGTTTTTGGAGGT 60.203 41.667 0.00 0.00 0.00 3.85
5461 5621 5.013704 TGGAATGCTAGAGTTTTTGGAGGTA 59.986 40.000 0.00 0.00 0.00 3.08
5462 5622 5.944007 GGAATGCTAGAGTTTTTGGAGGTAA 59.056 40.000 0.00 0.00 0.00 2.85
5466 5626 7.833285 TGCTAGAGTTTTTGGAGGTAAAATT 57.167 32.000 0.00 0.00 30.39 1.82
5467 5627 8.927675 TGCTAGAGTTTTTGGAGGTAAAATTA 57.072 30.769 0.00 0.00 30.39 1.40
5468 5628 8.789762 TGCTAGAGTTTTTGGAGGTAAAATTAC 58.210 33.333 0.00 0.00 30.39 1.89
5472 5632 9.011095 AGAGTTTTTGGAGGTAAAATTACTAGC 57.989 33.333 3.55 0.00 34.16 3.42
5473 5633 8.700439 AGTTTTTGGAGGTAAAATTACTAGCA 57.300 30.769 3.55 0.00 34.16 3.49
5474 5634 9.309224 AGTTTTTGGAGGTAAAATTACTAGCAT 57.691 29.630 3.55 0.00 34.16 3.79
5475 5635 9.569167 GTTTTTGGAGGTAAAATTACTAGCATC 57.431 33.333 3.55 0.00 34.16 3.91
5478 5638 8.871629 TTGGAGGTAAAATTACTAGCATCAAA 57.128 30.769 3.55 0.00 34.16 2.69
5493 5665 6.764308 AGCATCAAATTTACAGCTGTACAT 57.236 33.333 26.02 21.63 0.00 2.29
5508 5681 5.474532 AGCTGTACATTTGCTTCAGAAATCA 59.525 36.000 2.41 0.00 32.61 2.57
5509 5682 5.798934 GCTGTACATTTGCTTCAGAAATCAG 59.201 40.000 0.00 0.00 0.00 2.90
5524 5698 4.702131 AGAAATCAGAACCTGTATGCAACC 59.298 41.667 0.00 0.00 32.61 3.77
5527 5701 2.563620 TCAGAACCTGTATGCAACCGTA 59.436 45.455 0.00 0.00 32.61 4.02
5539 5713 2.556189 TGCAACCGTATGTGATTGCTTT 59.444 40.909 13.72 0.00 46.06 3.51
5560 5734 9.507329 TGCTTTATAGACTGATGTTTCTTTTCT 57.493 29.630 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.000727 GGTGGATTTGTACTTGAGGACG 58.999 50.000 0.00 0.00 0.00 4.79
1 2 3.751698 GTGGTGGATTTGTACTTGAGGAC 59.248 47.826 0.00 0.00 0.00 3.85
2 3 3.244770 GGTGGTGGATTTGTACTTGAGGA 60.245 47.826 0.00 0.00 0.00 3.71
3 4 3.081804 GGTGGTGGATTTGTACTTGAGG 58.918 50.000 0.00 0.00 0.00 3.86
4 5 3.081804 GGGTGGTGGATTTGTACTTGAG 58.918 50.000 0.00 0.00 0.00 3.02
5 6 2.224917 GGGGTGGTGGATTTGTACTTGA 60.225 50.000 0.00 0.00 0.00 3.02
6 7 2.167662 GGGGTGGTGGATTTGTACTTG 58.832 52.381 0.00 0.00 0.00 3.16
7 8 1.076513 GGGGGTGGTGGATTTGTACTT 59.923 52.381 0.00 0.00 0.00 2.24
8 9 0.702316 GGGGGTGGTGGATTTGTACT 59.298 55.000 0.00 0.00 0.00 2.73
9 10 0.406361 TGGGGGTGGTGGATTTGTAC 59.594 55.000 0.00 0.00 0.00 2.90
10 11 0.406361 GTGGGGGTGGTGGATTTGTA 59.594 55.000 0.00 0.00 0.00 2.41
11 12 1.155155 GTGGGGGTGGTGGATTTGT 59.845 57.895 0.00 0.00 0.00 2.83
12 13 1.609210 GGTGGGGGTGGTGGATTTG 60.609 63.158 0.00 0.00 0.00 2.32
13 14 2.858655 GGTGGGGGTGGTGGATTT 59.141 61.111 0.00 0.00 0.00 2.17
14 15 3.272847 GGGTGGGGGTGGTGGATT 61.273 66.667 0.00 0.00 0.00 3.01
92 93 2.491621 GGGAGGGCACGTACGTAC 59.508 66.667 22.34 16.05 0.00 3.67
93 94 2.755469 GGGGAGGGCACGTACGTA 60.755 66.667 22.34 0.00 0.00 3.57
95 96 4.446413 GTGGGGAGGGCACGTACG 62.446 72.222 15.01 15.01 0.00 3.67
122 123 0.306840 GGAATAAAGTTAGCCGCGGC 59.693 55.000 42.34 42.34 42.33 6.53
155 168 4.996434 CAGATGGATCCCGCCGCC 62.996 72.222 9.90 0.00 0.00 6.13
157 170 2.207229 TACCAGATGGATCCCGCCG 61.207 63.158 9.90 0.00 38.94 6.46
158 171 1.371558 GTACCAGATGGATCCCGCC 59.628 63.158 9.90 0.00 38.94 6.13
159 172 1.371558 GGTACCAGATGGATCCCGC 59.628 63.158 9.90 0.45 38.94 6.13
160 173 1.666011 CGGTACCAGATGGATCCCG 59.334 63.158 13.54 9.64 38.94 5.14
161 174 1.371558 GCGGTACCAGATGGATCCC 59.628 63.158 13.54 0.00 38.94 3.85
162 175 0.249911 GTGCGGTACCAGATGGATCC 60.250 60.000 13.54 4.20 38.94 3.36
163 176 3.290776 GTGCGGTACCAGATGGATC 57.709 57.895 13.54 0.00 38.94 3.36
186 199 1.284198 ACGGCACTAGGAGAAGGAGTA 59.716 52.381 0.00 0.00 0.00 2.59
188 201 0.457851 CACGGCACTAGGAGAAGGAG 59.542 60.000 0.00 0.00 0.00 3.69
193 206 2.675423 ACGCACGGCACTAGGAGA 60.675 61.111 0.00 0.00 0.00 3.71
194 207 2.507102 CACGCACGGCACTAGGAG 60.507 66.667 0.00 0.00 0.00 3.69
195 208 4.735132 GCACGCACGGCACTAGGA 62.735 66.667 0.00 0.00 0.00 2.94
360 378 1.518903 GAAACACCAGAGCAGGCCAC 61.519 60.000 5.01 0.00 0.00 5.01
361 379 1.228245 GAAACACCAGAGCAGGCCA 60.228 57.895 5.01 0.00 0.00 5.36
362 380 1.973812 GGAAACACCAGAGCAGGCC 60.974 63.158 0.00 0.00 38.79 5.19
363 381 0.538287 AAGGAAACACCAGAGCAGGC 60.538 55.000 0.00 0.00 42.04 4.85
364 382 1.242076 CAAGGAAACACCAGAGCAGG 58.758 55.000 0.00 0.00 42.04 4.85
367 385 0.868406 CGACAAGGAAACACCAGAGC 59.132 55.000 0.00 0.00 42.04 4.09
368 386 2.240493 ACGACAAGGAAACACCAGAG 57.760 50.000 0.00 0.00 42.04 3.35
369 387 2.702592 AACGACAAGGAAACACCAGA 57.297 45.000 0.00 0.00 42.04 3.86
370 388 2.032924 GGAAACGACAAGGAAACACCAG 59.967 50.000 0.00 0.00 42.04 4.00
371 389 2.018515 GGAAACGACAAGGAAACACCA 58.981 47.619 0.00 0.00 42.04 4.17
372 390 2.294979 AGGAAACGACAAGGAAACACC 58.705 47.619 0.00 0.00 39.35 4.16
373 391 3.242969 GGAAGGAAACGACAAGGAAACAC 60.243 47.826 0.00 0.00 0.00 3.32
374 392 2.946990 GGAAGGAAACGACAAGGAAACA 59.053 45.455 0.00 0.00 0.00 2.83
390 408 0.105709 GAGGAGGAGGAGGAGGAAGG 60.106 65.000 0.00 0.00 0.00 3.46
395 413 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
398 416 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
399 417 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
415 449 0.687757 TCTCATCTTCCCCACGGAGG 60.688 60.000 0.00 0.00 40.10 4.30
430 472 2.434843 CCGTAGCCATGGCCTCTCA 61.435 63.158 33.14 10.69 43.17 3.27
464 509 0.261991 TAGTGCCCCTCCTACTCCTG 59.738 60.000 0.00 0.00 0.00 3.86
471 516 1.455959 CGCTAGTAGTGCCCCTCCT 60.456 63.158 0.00 0.00 0.00 3.69
518 563 3.698463 CGTTGTCGTGGTCGTGCC 61.698 66.667 0.00 0.00 38.33 5.01
637 687 3.917760 ATCGCCGTCAGCTAGCCC 61.918 66.667 12.13 0.00 40.39 5.19
638 688 2.659897 CATCGCCGTCAGCTAGCC 60.660 66.667 12.13 0.00 40.39 3.93
639 689 2.105128 ACATCGCCGTCAGCTAGC 59.895 61.111 6.62 6.62 40.39 3.42
640 690 0.867753 GACACATCGCCGTCAGCTAG 60.868 60.000 0.00 0.00 40.39 3.42
668 718 2.107726 AGACATCCCCATCCACATCATG 59.892 50.000 0.00 0.00 0.00 3.07
669 719 2.374504 GAGACATCCCCATCCACATCAT 59.625 50.000 0.00 0.00 0.00 2.45
675 734 1.048724 GGACGAGACATCCCCATCCA 61.049 60.000 0.00 0.00 0.00 3.41
860 919 2.199652 CGCTGGGCACAAGGGAAAA 61.200 57.895 0.00 0.00 0.00 2.29
941 1001 1.134487 CGCATACGCACCAACCAAG 59.866 57.895 0.00 0.00 38.40 3.61
1146 1209 4.214327 GAGAAGGGGCTCGGCGAG 62.214 72.222 31.40 31.40 0.00 5.03
1786 1861 3.694566 GGCGTTGTAATGAGAAGGGATTT 59.305 43.478 0.00 0.00 0.00 2.17
1798 1873 1.836383 GTCGATCTCGGCGTTGTAAT 58.164 50.000 6.85 0.00 40.29 1.89
1806 1881 2.158959 CACGGTTGTCGATCTCGGC 61.159 63.158 0.00 0.00 45.40 5.54
1808 1883 2.497092 CGCACGGTTGTCGATCTCG 61.497 63.158 0.00 0.00 42.43 4.04
1809 1884 0.179181 TACGCACGGTTGTCGATCTC 60.179 55.000 0.00 0.00 42.43 2.75
1810 1885 0.454600 ATACGCACGGTTGTCGATCT 59.545 50.000 0.00 0.00 42.43 2.75
1811 1886 0.844503 GATACGCACGGTTGTCGATC 59.155 55.000 0.00 0.00 42.43 3.69
1812 1887 0.171679 TGATACGCACGGTTGTCGAT 59.828 50.000 0.00 0.00 42.43 3.59
1813 1888 0.171679 ATGATACGCACGGTTGTCGA 59.828 50.000 0.00 0.00 42.43 4.20
1815 1890 1.355971 ACATGATACGCACGGTTGTC 58.644 50.000 0.00 0.00 0.00 3.18
1817 1892 3.844585 GCATAACATGATACGCACGGTTG 60.845 47.826 0.00 0.00 31.92 3.77
1818 1893 2.286833 GCATAACATGATACGCACGGTT 59.713 45.455 0.00 0.00 33.49 4.44
1873 1958 2.364324 TGCCCGGTAGTTATCACATCTC 59.636 50.000 0.00 0.00 0.00 2.75
1926 2011 2.780010 GGGAATCATCAAGGAAGGAGGA 59.220 50.000 0.00 0.00 0.00 3.71
1931 2016 4.338879 ACACAAGGGAATCATCAAGGAAG 58.661 43.478 0.00 0.00 0.00 3.46
2070 2159 4.261447 GGATACCAACATTTCGGCATTACC 60.261 45.833 0.00 0.00 0.00 2.85
2071 2160 4.855531 GGATACCAACATTTCGGCATTAC 58.144 43.478 0.00 0.00 0.00 1.89
2102 2191 3.216800 TGACAACAAATGAAGCAGAGCT 58.783 40.909 0.00 0.00 42.56 4.09
2128 2220 1.443407 CTCGGTGGGAAGCATCGAT 59.557 57.895 0.00 0.00 34.50 3.59
2134 2226 1.244019 ACAATTGCTCGGTGGGAAGC 61.244 55.000 5.05 0.00 0.00 3.86
2140 2232 2.002586 CTCTGGTACAATTGCTCGGTG 58.997 52.381 5.05 0.00 38.70 4.94
2165 2257 2.807967 CAAACAGCTCGGAGAACATGAA 59.192 45.455 9.69 0.00 34.09 2.57
2166 2258 2.416747 CAAACAGCTCGGAGAACATGA 58.583 47.619 9.69 0.00 34.09 3.07
2176 2268 2.383527 GGGTCTCGCAAACAGCTCG 61.384 63.158 0.00 0.00 42.61 5.03
2177 2269 0.674895 ATGGGTCTCGCAAACAGCTC 60.675 55.000 0.00 0.00 42.61 4.09
2187 2279 1.066143 AGTGGCAACTTATGGGTCTCG 60.066 52.381 0.00 0.00 30.14 4.04
2211 2303 0.752658 CGCAGGGTATCCATGTCTGA 59.247 55.000 0.00 0.00 34.83 3.27
2406 2498 3.423154 GGGCAGAAACACGGCTCG 61.423 66.667 0.00 0.00 39.51 5.03
2463 2555 3.679502 AGCCGAAAAGTTTTGCATAATGC 59.320 39.130 5.36 0.00 45.29 3.56
2564 2656 5.163723 TGCTCTTCACTATTTATGCAGTTGC 60.164 40.000 0.00 0.00 42.50 4.17
2594 2686 2.362736 TGGACAGAGAATTGAGCATGC 58.637 47.619 10.51 10.51 0.00 4.06
2637 2729 2.943345 GCCGACAACTCGCAGTGTG 61.943 63.158 0.00 0.00 38.70 3.82
2676 2768 0.600557 AGCTAGATTCAGGCGATCCG 59.399 55.000 0.00 0.00 37.47 4.18
2706 2798 1.338020 GGCTTGTCACAAACTTCTGGG 59.662 52.381 0.00 0.00 0.00 4.45
2783 2875 2.433604 TCCTCAGAAGCATCCACTGATC 59.566 50.000 0.00 0.00 39.42 2.92
2846 2938 4.344865 TTTCTCCCTGCGCCCCAC 62.345 66.667 4.18 0.00 0.00 4.61
2886 2978 6.190587 CCCTTCATCCTCTTGTTTCCTTAAT 58.809 40.000 0.00 0.00 0.00 1.40
2889 2981 3.399305 ACCCTTCATCCTCTTGTTTCCTT 59.601 43.478 0.00 0.00 0.00 3.36
2984 3076 6.688637 TGACCTCATATTCTTCATGCTTTG 57.311 37.500 0.00 0.00 0.00 2.77
2985 3077 6.320672 CCTTGACCTCATATTCTTCATGCTTT 59.679 38.462 0.00 0.00 0.00 3.51
3048 3140 3.556365 GCCGCTTCTCTATTACTTTGTCC 59.444 47.826 0.00 0.00 0.00 4.02
3056 3148 1.752498 TGGTTCGCCGCTTCTCTATTA 59.248 47.619 0.00 0.00 41.18 0.98
3239 3331 6.259167 AGCTGTCTAAATCTACTGACTACTCG 59.741 42.308 0.00 0.00 0.00 4.18
3262 3354 2.135139 GGTGCCAACTTTTTAGCAAGC 58.865 47.619 0.00 0.00 36.91 4.01
3274 3366 1.782028 GACGGAACTGTGGTGCCAAC 61.782 60.000 0.00 0.00 41.31 3.77
3275 3367 1.525077 GACGGAACTGTGGTGCCAA 60.525 57.895 0.00 0.00 41.31 4.52
3285 3377 2.149973 ACGGGTATTAGGACGGAACT 57.850 50.000 0.00 0.00 0.00 3.01
3286 3378 4.590850 AATACGGGTATTAGGACGGAAC 57.409 45.455 2.33 0.00 34.27 3.62
3291 3383 8.947055 TCAAGTAAAAATACGGGTATTAGGAC 57.053 34.615 4.61 3.87 34.90 3.85
3319 3411 8.355169 CACAATTACTGCAATCCAATATAAGCT 58.645 33.333 0.00 0.00 0.00 3.74
3323 3415 7.822161 AGCACAATTACTGCAATCCAATATA 57.178 32.000 9.36 0.00 37.08 0.86
3325 3417 7.339212 ACTTAGCACAATTACTGCAATCCAATA 59.661 33.333 9.36 0.00 37.08 1.90
3328 3420 5.009631 ACTTAGCACAATTACTGCAATCCA 58.990 37.500 9.36 0.00 37.08 3.41
3329 3421 5.567138 ACTTAGCACAATTACTGCAATCC 57.433 39.130 9.36 0.00 37.08 3.01
3330 3422 7.873739 AAAACTTAGCACAATTACTGCAATC 57.126 32.000 9.36 0.00 37.08 2.67
3331 3423 8.028938 CCTAAAACTTAGCACAATTACTGCAAT 58.971 33.333 9.36 0.00 37.08 3.56
3332 3424 7.229707 TCCTAAAACTTAGCACAATTACTGCAA 59.770 33.333 9.36 2.66 37.08 4.08
3333 3425 6.712998 TCCTAAAACTTAGCACAATTACTGCA 59.287 34.615 9.36 0.00 37.08 4.41
3334 3426 7.141100 TCCTAAAACTTAGCACAATTACTGC 57.859 36.000 0.00 0.00 34.63 4.40
3335 3427 9.167311 AGATCCTAAAACTTAGCACAATTACTG 57.833 33.333 0.00 0.00 0.00 2.74
3339 3431 9.515226 TGTTAGATCCTAAAACTTAGCACAATT 57.485 29.630 0.00 0.00 0.00 2.32
3340 3432 9.686683 ATGTTAGATCCTAAAACTTAGCACAAT 57.313 29.630 0.00 0.00 0.00 2.71
3342 3434 9.817809 CTATGTTAGATCCTAAAACTTAGCACA 57.182 33.333 0.00 0.00 29.62 4.57
3363 3455 9.726438 GCCCAATTATACACTTCTTATCTATGT 57.274 33.333 0.00 0.00 0.00 2.29
3364 3456 9.950496 AGCCCAATTATACACTTCTTATCTATG 57.050 33.333 0.00 0.00 0.00 2.23
3365 3457 9.950496 CAGCCCAATTATACACTTCTTATCTAT 57.050 33.333 0.00 0.00 0.00 1.98
3366 3458 8.934697 ACAGCCCAATTATACACTTCTTATCTA 58.065 33.333 0.00 0.00 0.00 1.98
3367 3459 7.806180 ACAGCCCAATTATACACTTCTTATCT 58.194 34.615 0.00 0.00 0.00 1.98
3368 3460 7.934120 AGACAGCCCAATTATACACTTCTTATC 59.066 37.037 0.00 0.00 0.00 1.75
3369 3461 7.716998 CAGACAGCCCAATTATACACTTCTTAT 59.283 37.037 0.00 0.00 0.00 1.73
3370 3462 7.047891 CAGACAGCCCAATTATACACTTCTTA 58.952 38.462 0.00 0.00 0.00 2.10
3371 3463 5.882557 CAGACAGCCCAATTATACACTTCTT 59.117 40.000 0.00 0.00 0.00 2.52
3374 3466 3.947834 GCAGACAGCCCAATTATACACTT 59.052 43.478 0.00 0.00 37.23 3.16
3413 3505 4.082026 ACAGCAATAAGGACAAAATCTGGC 60.082 41.667 0.00 0.00 0.00 4.85
3425 3517 3.206150 AGGCGATACAACAGCAATAAGG 58.794 45.455 0.00 0.00 0.00 2.69
3428 3520 4.929819 TCTAGGCGATACAACAGCAATA 57.070 40.909 0.00 0.00 0.00 1.90
3434 3526 3.129813 ACGTTGATCTAGGCGATACAACA 59.870 43.478 0.00 0.00 38.56 3.33
3442 3534 3.766151 TGACTAAACGTTGATCTAGGCG 58.234 45.455 0.00 0.00 0.00 5.52
3482 3576 4.723248 CTTGATAACGCACTCCCTTTTTC 58.277 43.478 0.00 0.00 0.00 2.29
3486 3580 1.003118 TGCTTGATAACGCACTCCCTT 59.997 47.619 0.00 0.00 0.00 3.95
3487 3581 0.613260 TGCTTGATAACGCACTCCCT 59.387 50.000 0.00 0.00 0.00 4.20
3490 3584 0.375106 GCCTGCTTGATAACGCACTC 59.625 55.000 0.00 0.00 31.95 3.51
3491 3585 0.321564 TGCCTGCTTGATAACGCACT 60.322 50.000 0.00 0.00 31.95 4.40
3492 3586 0.097674 CTGCCTGCTTGATAACGCAC 59.902 55.000 0.00 0.00 31.95 5.34
3493 3587 0.036483 TCTGCCTGCTTGATAACGCA 60.036 50.000 0.00 0.00 34.54 5.24
3494 3588 1.303309 ATCTGCCTGCTTGATAACGC 58.697 50.000 0.00 0.00 0.00 4.84
3495 3589 4.024556 CCTAAATCTGCCTGCTTGATAACG 60.025 45.833 0.00 0.00 0.00 3.18
3496 3590 5.126067 TCCTAAATCTGCCTGCTTGATAAC 58.874 41.667 0.00 0.00 0.00 1.89
3497 3591 5.372343 TCCTAAATCTGCCTGCTTGATAA 57.628 39.130 0.00 0.00 0.00 1.75
3498 3592 5.126067 GTTCCTAAATCTGCCTGCTTGATA 58.874 41.667 0.00 0.00 0.00 2.15
3499 3593 3.939740 TCCTAAATCTGCCTGCTTGAT 57.060 42.857 0.00 0.00 0.00 2.57
3500 3594 3.244875 TGTTCCTAAATCTGCCTGCTTGA 60.245 43.478 0.00 0.00 0.00 3.02
3501 3595 3.084039 TGTTCCTAAATCTGCCTGCTTG 58.916 45.455 0.00 0.00 0.00 4.01
3502 3596 3.009473 TCTGTTCCTAAATCTGCCTGCTT 59.991 43.478 0.00 0.00 0.00 3.91
3503 3597 2.573462 TCTGTTCCTAAATCTGCCTGCT 59.427 45.455 0.00 0.00 0.00 4.24
3504 3598 2.680339 GTCTGTTCCTAAATCTGCCTGC 59.320 50.000 0.00 0.00 0.00 4.85
3505 3599 4.213564 AGTCTGTTCCTAAATCTGCCTG 57.786 45.455 0.00 0.00 0.00 4.85
3507 3601 3.942115 GGAAGTCTGTTCCTAAATCTGCC 59.058 47.826 0.00 0.00 35.73 4.85
3508 3602 4.837972 AGGAAGTCTGTTCCTAAATCTGC 58.162 43.478 4.43 0.00 46.48 4.26
3539 3645 8.072567 GCGTCAGCTGAATTATTGAGAATTAAT 58.927 33.333 20.19 0.00 41.01 1.40
3543 3649 5.415415 GCGTCAGCTGAATTATTGAGAAT 57.585 39.130 20.19 0.00 41.01 2.40
3576 3682 1.066002 TGTCTTTCAGTTGCAAGCTGC 59.934 47.619 18.50 0.00 45.29 5.25
3579 3685 4.470462 CAGTATGTCTTTCAGTTGCAAGC 58.530 43.478 0.00 0.00 0.00 4.01
3580 3686 4.516698 ACCAGTATGTCTTTCAGTTGCAAG 59.483 41.667 0.00 0.00 0.00 4.01
3597 3703 6.591935 AGTCAATGAAGAAACAAGACCAGTA 58.408 36.000 0.00 0.00 32.95 2.74
3606 3712 6.647334 TGGCAAATAGTCAATGAAGAAACA 57.353 33.333 0.00 0.00 0.00 2.83
3608 3714 8.347004 TGTATGGCAAATAGTCAATGAAGAAA 57.653 30.769 0.00 0.00 34.09 2.52
3622 3728 6.550854 AGTGGCAGTTTATATGTATGGCAAAT 59.449 34.615 1.10 0.00 46.24 2.32
3627 3733 6.942532 AACAGTGGCAGTTTATATGTATGG 57.057 37.500 0.00 0.00 0.00 2.74
3636 3742 8.630054 AGTTAATCATAAACAGTGGCAGTTTA 57.370 30.769 12.64 12.64 43.27 2.01
3665 3771 6.975197 GGAGCAAATGGTAGAAAGAAAATAGC 59.025 38.462 0.00 0.00 0.00 2.97
3671 3778 4.761739 CACTGGAGCAAATGGTAGAAAGAA 59.238 41.667 0.00 0.00 0.00 2.52
3677 3784 1.470098 GCACACTGGAGCAAATGGTAG 59.530 52.381 0.00 0.00 0.00 3.18
3685 3792 0.252057 TAGTAGGGCACACTGGAGCA 60.252 55.000 0.00 0.00 31.64 4.26
3687 3794 1.557099 TGTAGTAGGGCACACTGGAG 58.443 55.000 0.00 0.00 0.00 3.86
3781 3888 6.788684 TCAATGACCATTTGCAATTTCTTG 57.211 33.333 0.00 0.00 35.36 3.02
3808 3915 2.906389 TGTTCCTTCAGCTCCATGTACT 59.094 45.455 0.00 0.00 0.00 2.73
3844 3951 7.150783 AGTCTTGGTGAAATTTTCATAGAGC 57.849 36.000 14.54 11.42 42.47 4.09
3883 3990 1.138661 CTCAGATCTCCCTGCAACTCC 59.861 57.143 0.00 0.00 34.28 3.85
3994 4101 2.367947 AGGTGGAGGAGAGGGAATTT 57.632 50.000 0.00 0.00 0.00 1.82
4007 4114 3.713650 GCTCTGGCTGTAGGTGGA 58.286 61.111 0.00 0.00 35.22 4.02
4045 4152 2.672996 GGCTTTGGCTCGCTGGAA 60.673 61.111 0.00 0.00 38.73 3.53
4054 4161 0.598419 GCTGTTGTTGAGGCTTTGGC 60.598 55.000 0.00 0.00 37.82 4.52
4132 4239 1.392853 GCAGCTTTCATCTGTGTCGAG 59.607 52.381 0.00 0.00 34.21 4.04
4159 4266 3.676172 CAGTAAATAACCGCAGTTCGTCA 59.324 43.478 0.00 0.00 37.42 4.35
4170 4277 5.936372 ACGGGTTTCTCTTCAGTAAATAACC 59.064 40.000 0.00 0.00 34.48 2.85
4395 4502 6.936968 AGTACTTGAGGTCATAAACTTCCT 57.063 37.500 0.00 0.00 33.14 3.36
4565 4672 5.056480 TGAAGAAGCATTGTATACATCGGG 58.944 41.667 6.36 0.00 0.00 5.14
4568 4675 7.005062 ACGTTGAAGAAGCATTGTATACATC 57.995 36.000 6.36 0.69 0.00 3.06
4569 4676 6.985188 ACGTTGAAGAAGCATTGTATACAT 57.015 33.333 6.36 0.00 0.00 2.29
4570 4677 6.425417 TGAACGTTGAAGAAGCATTGTATACA 59.575 34.615 5.00 0.08 0.00 2.29
4571 4678 6.827641 TGAACGTTGAAGAAGCATTGTATAC 58.172 36.000 5.00 0.00 0.00 1.47
4572 4679 7.428282 TTGAACGTTGAAGAAGCATTGTATA 57.572 32.000 5.00 0.00 0.00 1.47
4573 4680 5.940192 TGAACGTTGAAGAAGCATTGTAT 57.060 34.783 5.00 0.00 0.00 2.29
4574 4681 5.743026 TTGAACGTTGAAGAAGCATTGTA 57.257 34.783 5.00 0.00 0.00 2.41
4578 4685 5.406649 TGTTTTTGAACGTTGAAGAAGCAT 58.593 33.333 5.00 0.00 0.00 3.79
4591 4698 3.133901 AGGTGGGATGGTTGTTTTTGAAC 59.866 43.478 0.00 0.00 0.00 3.18
4594 4701 3.836365 AAGGTGGGATGGTTGTTTTTG 57.164 42.857 0.00 0.00 0.00 2.44
4599 4706 0.856982 TGGAAAGGTGGGATGGTTGT 59.143 50.000 0.00 0.00 0.00 3.32
4600 4707 1.895131 CTTGGAAAGGTGGGATGGTTG 59.105 52.381 0.00 0.00 41.27 3.77
4614 4721 1.411246 ACGCACACTGACTACTTGGAA 59.589 47.619 0.00 0.00 0.00 3.53
4615 4722 1.037493 ACGCACACTGACTACTTGGA 58.963 50.000 0.00 0.00 0.00 3.53
4616 4723 1.526887 CAACGCACACTGACTACTTGG 59.473 52.381 0.00 0.00 0.00 3.61
4617 4724 2.469826 TCAACGCACACTGACTACTTG 58.530 47.619 0.00 0.00 0.00 3.16
4618 4725 2.882927 TCAACGCACACTGACTACTT 57.117 45.000 0.00 0.00 0.00 2.24
4619 4726 4.673441 GATATCAACGCACACTGACTACT 58.327 43.478 0.00 0.00 0.00 2.57
4620 4727 3.482472 CGATATCAACGCACACTGACTAC 59.518 47.826 3.12 0.00 0.00 2.73
4622 4729 2.530177 CGATATCAACGCACACTGACT 58.470 47.619 3.12 0.00 0.00 3.41
4623 4730 2.979006 CGATATCAACGCACACTGAC 57.021 50.000 3.12 0.00 0.00 3.51
4632 4739 1.567504 AAACCGAGGCGATATCAACG 58.432 50.000 3.12 2.69 0.00 4.10
4633 4740 2.034001 CGAAAACCGAGGCGATATCAAC 60.034 50.000 3.12 0.00 41.76 3.18
4634 4741 2.198406 CGAAAACCGAGGCGATATCAA 58.802 47.619 3.12 0.00 41.76 2.57
4635 4742 1.537348 CCGAAAACCGAGGCGATATCA 60.537 52.381 3.12 0.00 41.76 2.15
4636 4743 1.137513 CCGAAAACCGAGGCGATATC 58.862 55.000 0.00 0.00 41.76 1.63
4637 4744 0.462789 ACCGAAAACCGAGGCGATAT 59.537 50.000 0.00 0.00 41.76 1.63
4638 4745 0.179129 GACCGAAAACCGAGGCGATA 60.179 55.000 0.00 0.00 41.76 2.92
4639 4746 1.447314 GACCGAAAACCGAGGCGAT 60.447 57.895 0.00 0.00 41.76 4.58
4640 4747 2.048877 GACCGAAAACCGAGGCGA 60.049 61.111 0.00 0.00 41.76 5.54
4641 4748 1.740296 ATGACCGAAAACCGAGGCG 60.740 57.895 0.00 0.00 41.76 5.52
4642 4749 1.644786 CCATGACCGAAAACCGAGGC 61.645 60.000 0.00 0.00 41.76 4.70
4643 4750 0.321298 ACCATGACCGAAAACCGAGG 60.321 55.000 0.00 0.00 41.76 4.63
4644 4751 0.796312 CACCATGACCGAAAACCGAG 59.204 55.000 0.00 0.00 41.76 4.63
4645 4752 0.393448 TCACCATGACCGAAAACCGA 59.607 50.000 0.00 0.00 41.76 4.69
4646 4753 1.448985 ATCACCATGACCGAAAACCG 58.551 50.000 0.00 0.00 38.18 4.44
4647 4754 2.943033 CCTATCACCATGACCGAAAACC 59.057 50.000 0.00 0.00 0.00 3.27
4648 4755 3.606687 ACCTATCACCATGACCGAAAAC 58.393 45.455 0.00 0.00 0.00 2.43
4649 4756 3.992943 ACCTATCACCATGACCGAAAA 57.007 42.857 0.00 0.00 0.00 2.29
4650 4757 3.770388 TGTACCTATCACCATGACCGAAA 59.230 43.478 0.00 0.00 0.00 3.46
4651 4758 3.367321 TGTACCTATCACCATGACCGAA 58.633 45.455 0.00 0.00 0.00 4.30
4652 4759 2.956333 CTGTACCTATCACCATGACCGA 59.044 50.000 0.00 0.00 0.00 4.69
4653 4760 2.035961 CCTGTACCTATCACCATGACCG 59.964 54.545 0.00 0.00 0.00 4.79
4654 4761 2.224305 GCCTGTACCTATCACCATGACC 60.224 54.545 0.00 0.00 0.00 4.02
4655 4762 2.224305 GGCCTGTACCTATCACCATGAC 60.224 54.545 0.00 0.00 0.00 3.06
4656 4763 2.047061 GGCCTGTACCTATCACCATGA 58.953 52.381 0.00 0.00 0.00 3.07
4657 4764 1.768275 TGGCCTGTACCTATCACCATG 59.232 52.381 3.32 0.00 0.00 3.66
4658 4765 1.768870 GTGGCCTGTACCTATCACCAT 59.231 52.381 3.32 0.00 0.00 3.55
4659 4766 1.200519 GTGGCCTGTACCTATCACCA 58.799 55.000 3.32 0.00 0.00 4.17
4660 4767 1.200519 TGTGGCCTGTACCTATCACC 58.799 55.000 3.32 0.00 0.00 4.02
4661 4768 3.560636 AATGTGGCCTGTACCTATCAC 57.439 47.619 3.32 0.00 0.00 3.06
4662 4769 3.265737 ACAAATGTGGCCTGTACCTATCA 59.734 43.478 3.32 0.00 0.00 2.15
4663 4770 3.886123 ACAAATGTGGCCTGTACCTATC 58.114 45.455 3.32 0.00 0.00 2.08
4664 4771 5.444744 TTACAAATGTGGCCTGTACCTAT 57.555 39.130 3.32 0.00 0.00 2.57
4665 4772 4.912317 TTACAAATGTGGCCTGTACCTA 57.088 40.909 3.32 0.00 0.00 3.08
4666 4773 3.799432 TTACAAATGTGGCCTGTACCT 57.201 42.857 3.32 0.00 0.00 3.08
4674 4781 7.489113 CAGACTCCAAATATTTACAAATGTGGC 59.511 37.037 0.00 0.00 31.53 5.01
4679 4786 8.650143 ACCACAGACTCCAAATATTTACAAAT 57.350 30.769 0.00 0.00 0.00 2.32
4704 4811 5.181009 CAGATAACTCACCAAGCATCTTGA 58.819 41.667 8.04 0.00 31.08 3.02
4706 4813 5.171339 ACAGATAACTCACCAAGCATCTT 57.829 39.130 0.00 0.00 31.08 2.40
4707 4814 4.223700 TGACAGATAACTCACCAAGCATCT 59.776 41.667 0.00 0.00 32.78 2.90
4708 4815 4.507710 TGACAGATAACTCACCAAGCATC 58.492 43.478 0.00 0.00 0.00 3.91
4787 4912 2.124277 AAACGAGTTTCCCTATGGCC 57.876 50.000 0.00 0.00 0.00 5.36
4810 4935 6.720112 TCTGTACACTAGTTTGGTAACTGT 57.280 37.500 0.00 0.00 44.22 3.55
4839 4964 9.495754 CTTCATTTCGACAAATTCCTATTCTTC 57.504 33.333 0.00 0.00 28.97 2.87
4935 5061 1.537202 GCTTCAGAATTGCAAGACGGT 59.463 47.619 4.94 0.00 0.00 4.83
5002 5132 6.074623 CGAGACATAATTCTCTCAATTCCACG 60.075 42.308 7.93 0.00 40.07 4.94
5027 5157 0.818040 AAACTGACCCGTGAAGGCAC 60.818 55.000 0.00 0.00 41.67 5.01
5038 5168 2.946762 GTGGCGCTCAAACTGACC 59.053 61.111 7.64 0.00 0.00 4.02
5052 5182 2.285220 CGTAAAGGATGCATCTTCGTGG 59.715 50.000 25.28 8.49 0.00 4.94
5075 5213 2.021355 AGAGAGAAGGCATTTCAGCG 57.979 50.000 3.45 0.00 38.31 5.18
5220 5361 3.326747 ACTGTCAGCTAAACAATCCGAC 58.673 45.455 0.00 0.00 0.00 4.79
5263 5404 3.551082 CAGTTTCGACATGAGAGATGAGC 59.449 47.826 0.00 0.00 0.00 4.26
5322 5464 0.871722 TTACACATGACCAACGCTGC 59.128 50.000 0.00 0.00 0.00 5.25
5370 5514 1.377725 CCATTGACGGCCTGAAGCT 60.378 57.895 0.00 0.00 43.05 3.74
5373 5517 1.971167 GCACCATTGACGGCCTGAA 60.971 57.895 0.00 0.00 0.00 3.02
5376 5520 0.034574 TTATGCACCATTGACGGCCT 60.035 50.000 0.00 0.00 0.00 5.19
5382 5526 6.211184 AGGAAAACATCTTTATGCACCATTGA 59.789 34.615 0.00 0.00 36.50 2.57
5384 5528 6.610075 AGGAAAACATCTTTATGCACCATT 57.390 33.333 0.00 0.00 36.50 3.16
5425 5585 6.373774 ACTCTAGCATTCCATTGTTCTCAAAG 59.626 38.462 0.00 0.00 37.11 2.77
5462 5622 9.793252 CAGCTGTAAATTTGATGCTAGTAATTT 57.207 29.630 5.25 0.00 35.21 1.82
5466 5626 8.038351 TGTACAGCTGTAAATTTGATGCTAGTA 58.962 33.333 27.61 0.00 31.52 1.82
5467 5627 6.878923 TGTACAGCTGTAAATTTGATGCTAGT 59.121 34.615 27.61 9.87 31.52 2.57
5468 5628 7.307493 TGTACAGCTGTAAATTTGATGCTAG 57.693 36.000 27.61 5.39 31.52 3.42
5470 5630 6.764308 ATGTACAGCTGTAAATTTGATGCT 57.236 33.333 27.61 2.37 31.52 3.79
5471 5631 7.816945 AAATGTACAGCTGTAAATTTGATGC 57.183 32.000 37.38 20.83 43.26 3.91
5478 5638 6.430925 TCTGAAGCAAATGTACAGCTGTAAAT 59.569 34.615 27.61 24.55 38.86 1.40
5485 5657 5.702865 TGATTTCTGAAGCAAATGTACAGC 58.297 37.500 0.33 0.00 0.00 4.40
5508 5681 3.055385 ACATACGGTTGCATACAGGTTCT 60.055 43.478 0.00 0.00 0.00 3.01
5509 5682 3.063452 CACATACGGTTGCATACAGGTTC 59.937 47.826 0.00 0.00 0.00 3.62
5524 5698 7.930513 TCAGTCTATAAAGCAATCACATACG 57.069 36.000 0.00 0.00 0.00 3.06
5527 5701 8.743085 AACATCAGTCTATAAAGCAATCACAT 57.257 30.769 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.