Multiple sequence alignment - TraesCS4B01G323500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G323500 chr4B 100.000 3749 0 0 1 3749 613910278 613906530 0.000000e+00 6924.0
1 TraesCS4B01G323500 chr5A 93.294 3236 136 36 260 3475 663371746 663374920 0.000000e+00 4698.0
2 TraesCS4B01G323500 chr5A 93.204 103 7 0 42 144 663370531 663370633 6.490000e-33 152.0
3 TraesCS4B01G323500 chr5A 97.468 79 0 1 3586 3662 663375027 663375105 2.350000e-27 134.0
4 TraesCS4B01G323500 chr5A 93.056 72 4 1 3499 3570 663374907 663374977 1.840000e-18 104.0
5 TraesCS4B01G323500 chr4D 96.534 1587 40 4 537 2108 483176061 483177647 0.000000e+00 2612.0
6 TraesCS4B01G323500 chr4D 91.797 768 41 10 2158 2913 483177642 483178399 0.000000e+00 1050.0
7 TraesCS4B01G323500 chr4D 91.771 559 25 7 1 541 483175251 483175806 0.000000e+00 758.0
8 TraesCS4B01G323500 chr4D 91.057 123 10 1 3172 3294 483178596 483178717 8.330000e-37 165.0
9 TraesCS4B01G323500 chr1B 78.151 1309 200 49 961 2241 547165858 547167108 0.000000e+00 754.0
10 TraesCS4B01G323500 chr1B 80.729 384 59 10 2374 2754 547167284 547167655 6.130000e-73 285.0
11 TraesCS4B01G323500 chr1A 76.579 1362 205 72 1458 2754 502499230 502500542 0.000000e+00 643.0
12 TraesCS4B01G323500 chr1A 87.029 239 29 2 1073 1309 502498930 502499168 6.170000e-68 268.0
13 TraesCS4B01G323500 chr1D 80.417 623 97 14 1458 2067 406819620 406820230 5.710000e-123 451.0
14 TraesCS4B01G323500 chr1D 86.908 359 44 3 953 1309 406819204 406819561 2.100000e-107 399.0
15 TraesCS4B01G323500 chr3D 100.000 47 0 0 1377 1423 5879372 5879418 1.850000e-13 87.9
16 TraesCS4B01G323500 chr3D 90.476 63 3 2 1371 1433 126219682 126219623 3.100000e-11 80.5
17 TraesCS4B01G323500 chr7D 100.000 46 0 0 1378 1423 496154927 496154972 6.670000e-13 86.1
18 TraesCS4B01G323500 chr6A 100.000 46 0 0 1378 1423 506642829 506642874 6.670000e-13 86.1
19 TraesCS4B01G323500 chr5B 100.000 45 0 0 1379 1423 170586177 170586133 2.400000e-12 84.2
20 TraesCS4B01G323500 chr2B 96.078 51 1 1 1373 1423 191749231 191749280 8.630000e-12 82.4
21 TraesCS4B01G323500 chr3B 94.340 53 2 1 1371 1423 180277644 180277593 3.100000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G323500 chr4B 613906530 613910278 3748 True 6924.00 6924 100.00000 1 3749 1 chr4B.!!$R1 3748
1 TraesCS4B01G323500 chr5A 663370531 663375105 4574 False 1272.00 4698 94.25550 42 3662 4 chr5A.!!$F1 3620
2 TraesCS4B01G323500 chr4D 483175251 483178717 3466 False 1146.25 2612 92.78975 1 3294 4 chr4D.!!$F1 3293
3 TraesCS4B01G323500 chr1B 547165858 547167655 1797 False 519.50 754 79.44000 961 2754 2 chr1B.!!$F1 1793
4 TraesCS4B01G323500 chr1A 502498930 502500542 1612 False 455.50 643 81.80400 1073 2754 2 chr1A.!!$F1 1681
5 TraesCS4B01G323500 chr1D 406819204 406820230 1026 False 425.00 451 83.66250 953 2067 2 chr1D.!!$F1 1114

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
429 1478 0.039035 TAGAGGTTTGGCGGGCATTT 59.961 50.000 4.64 0.00 0.00 2.32 F
431 1480 1.111277 GAGGTTTGGCGGGCATTTAT 58.889 50.000 4.64 0.00 0.00 1.40 F
720 2032 3.360867 TCTTTGTGAACCAGCAAAAGGA 58.639 40.909 0.00 0.00 34.68 3.36 F
1778 3187 4.921515 GCACCATGTACTACATATACACGG 59.078 45.833 1.19 1.22 40.83 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1811 3221 1.470890 GCATACAAACCAAGCGCCTTA 59.529 47.619 2.29 0.0 0.00 2.69 R
2386 3852 2.314323 AAGCACAAACAAAAGCAGGG 57.686 45.000 0.00 0.0 0.00 4.45 R
2586 4056 0.820074 TTTGGTAAGCCCACACACCG 60.820 55.000 0.00 0.0 45.19 4.94 R
3672 5227 0.107456 CCTCTTGGCAGTGACTGTGT 59.893 55.000 14.82 0.0 33.43 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 122 9.587772 ACATACTGTGCTACTTCTAGTTAATTG 57.412 33.333 0.00 0.00 0.00 2.32
144 145 2.026915 TCTGATCTGTGGTGGATGGTTG 60.027 50.000 0.00 0.00 0.00 3.77
155 319 3.502211 GGTGGATGGTTGTTACTTGACAG 59.498 47.826 0.00 0.00 0.00 3.51
212 377 9.066892 ACAGTTATTTGTTCTTTGCTCTATGAA 57.933 29.630 0.00 0.00 0.00 2.57
267 440 2.634453 TGCCACTGAGATGAAGACTTGA 59.366 45.455 0.00 0.00 0.00 3.02
340 1380 0.175302 AGGTTCGAGCAGCTCATGAG 59.825 55.000 22.49 18.84 0.00 2.90
374 1414 7.517614 TGTTGTATAACATTGGTTGACATGT 57.482 32.000 0.00 0.00 41.66 3.21
428 1477 0.394352 CTAGAGGTTTGGCGGGCATT 60.394 55.000 4.64 0.00 0.00 3.56
429 1478 0.039035 TAGAGGTTTGGCGGGCATTT 59.961 50.000 4.64 0.00 0.00 2.32
430 1479 0.039035 AGAGGTTTGGCGGGCATTTA 59.961 50.000 4.64 0.00 0.00 1.40
431 1480 1.111277 GAGGTTTGGCGGGCATTTAT 58.889 50.000 4.64 0.00 0.00 1.40
512 1563 4.974933 ATAGGATATACTGGGCTGAGGA 57.025 45.455 0.00 0.00 0.00 3.71
522 1574 4.677182 ACTGGGCTGAGGACAAAATAAAT 58.323 39.130 0.00 0.00 0.00 1.40
561 1873 9.692749 TGTACTTGTTAGTCTGTGAATTTCTAG 57.307 33.333 0.00 0.00 35.78 2.43
609 1921 9.399797 AGTAATTCTGCTTGTGATCATATTTCA 57.600 29.630 0.00 0.00 0.00 2.69
613 1925 9.788889 ATTCTGCTTGTGATCATATTTCATCTA 57.211 29.630 0.00 0.00 0.00 1.98
681 1993 7.797819 AGAAATATCTGAACACAGTTTCGTTC 58.202 34.615 0.00 0.00 41.53 3.95
720 2032 3.360867 TCTTTGTGAACCAGCAAAAGGA 58.639 40.909 0.00 0.00 34.68 3.36
759 2071 5.086621 ACCAGCAAACCCTATTTTCTTCAT 58.913 37.500 0.00 0.00 0.00 2.57
846 2158 8.764524 AGCTTACTTGATAGTTTAGTCTTGTG 57.235 34.615 0.00 0.00 35.78 3.33
918 2230 8.564509 TTGGGTGGTATTATTTTGTACACTAC 57.435 34.615 0.00 0.00 0.00 2.73
1778 3187 4.921515 GCACCATGTACTACATATACACGG 59.078 45.833 1.19 1.22 40.83 4.94
1811 3221 6.867662 AATCTTGAGTTCTCAACGTCAATT 57.132 33.333 10.67 4.66 36.23 2.32
2173 3586 5.760193 TGTTCGTTTTATGAATGCATTGC 57.240 34.783 18.59 9.15 35.94 3.56
2295 3735 5.304101 TGAATTTGCAACCAGTGGAAGTAAT 59.696 36.000 18.40 5.88 38.95 1.89
2296 3736 6.491745 TGAATTTGCAACCAGTGGAAGTAATA 59.508 34.615 18.40 5.28 38.95 0.98
2297 3737 7.178274 TGAATTTGCAACCAGTGGAAGTAATAT 59.822 33.333 18.40 5.38 38.95 1.28
2448 3917 5.101628 GCAGCGGAACATGATAAAATGAAA 58.898 37.500 0.00 0.00 0.00 2.69
2756 4226 4.012374 TGGCCTCTCAAATGATGTTCTTC 58.988 43.478 3.32 0.00 0.00 2.87
2776 4246 1.269166 CATGTCCTTAGACGCGACAC 58.731 55.000 15.93 3.56 46.74 3.67
2826 4306 2.726821 TGTTCAGGATGGCTGGAATTC 58.273 47.619 0.00 0.00 36.16 2.17
2872 4352 2.263741 CGCCCTGCTTGAAGCTTGT 61.264 57.895 18.94 0.00 42.97 3.16
2914 4398 2.831685 TAACCGGATGCTTGCGATAT 57.168 45.000 9.46 3.42 39.29 1.63
2941 4425 3.505680 GTGGTTTGTGATGCATGAACCTA 59.494 43.478 21.68 11.89 40.25 3.08
2943 4427 4.218200 TGGTTTGTGATGCATGAACCTAAG 59.782 41.667 21.68 0.00 40.25 2.18
2975 4467 0.027979 CATGTTGCCTTCCGTATGCG 59.972 55.000 0.00 0.00 37.95 4.73
2994 4486 1.335324 CGGGCTGTGAAGCTGAAAAAG 60.335 52.381 0.00 0.00 34.73 2.27
3006 4498 2.227626 GCTGAAAAAGAGCCTCCTGTTC 59.772 50.000 0.00 0.00 0.00 3.18
3025 4517 5.123227 TGTTCAAGTGTAGTTTCTTCCCTG 58.877 41.667 0.00 0.00 0.00 4.45
3026 4518 5.123936 GTTCAAGTGTAGTTTCTTCCCTGT 58.876 41.667 0.00 0.00 0.00 4.00
3027 4519 5.367945 TCAAGTGTAGTTTCTTCCCTGTT 57.632 39.130 0.00 0.00 0.00 3.16
3028 4520 6.488769 TCAAGTGTAGTTTCTTCCCTGTTA 57.511 37.500 0.00 0.00 0.00 2.41
3029 4521 6.891388 TCAAGTGTAGTTTCTTCCCTGTTAA 58.109 36.000 0.00 0.00 0.00 2.01
3030 4522 7.340256 TCAAGTGTAGTTTCTTCCCTGTTAAA 58.660 34.615 0.00 0.00 0.00 1.52
3031 4523 7.281549 TCAAGTGTAGTTTCTTCCCTGTTAAAC 59.718 37.037 0.00 0.00 33.11 2.01
3032 4524 6.896883 AGTGTAGTTTCTTCCCTGTTAAACT 58.103 36.000 0.00 0.00 42.91 2.66
3033 4525 6.766467 AGTGTAGTTTCTTCCCTGTTAAACTG 59.234 38.462 9.03 0.00 41.11 3.16
3034 4526 6.764560 GTGTAGTTTCTTCCCTGTTAAACTGA 59.235 38.462 9.03 0.00 41.11 3.41
3035 4527 6.764560 TGTAGTTTCTTCCCTGTTAAACTGAC 59.235 38.462 9.03 5.17 41.11 3.51
3043 4535 5.441500 TCCCTGTTAAACTGACAAACATGA 58.558 37.500 0.00 0.00 33.01 3.07
3128 4620 7.063780 CCAGAATAAGCTGCAGTTTTTAATTGG 59.936 37.037 21.36 16.96 34.56 3.16
3138 4630 8.873215 TGCAGTTTTTAATTGGATTTTCGTTA 57.127 26.923 0.00 0.00 0.00 3.18
3139 4631 9.482627 TGCAGTTTTTAATTGGATTTTCGTTAT 57.517 25.926 0.00 0.00 0.00 1.89
3140 4632 9.739786 GCAGTTTTTAATTGGATTTTCGTTATG 57.260 29.630 0.00 0.00 0.00 1.90
3148 4640 8.716646 AATTGGATTTTCGTTATGGATTTTCC 57.283 30.769 0.00 0.00 36.96 3.13
3149 4641 7.475137 TTGGATTTTCGTTATGGATTTTCCT 57.525 32.000 0.00 0.00 37.46 3.36
3150 4642 8.582657 TTGGATTTTCGTTATGGATTTTCCTA 57.417 30.769 0.00 0.00 37.46 2.94
3152 4644 7.832187 TGGATTTTCGTTATGGATTTTCCTAGT 59.168 33.333 0.00 0.00 37.46 2.57
3153 4645 8.343366 GGATTTTCGTTATGGATTTTCCTAGTC 58.657 37.037 0.00 0.00 37.46 2.59
3154 4646 9.110502 GATTTTCGTTATGGATTTTCCTAGTCT 57.889 33.333 0.00 0.00 37.46 3.24
3155 4647 8.488651 TTTTCGTTATGGATTTTCCTAGTCTC 57.511 34.615 0.00 0.00 37.46 3.36
3158 4650 7.848128 TCGTTATGGATTTTCCTAGTCTCTTT 58.152 34.615 0.00 0.00 37.46 2.52
3159 4651 7.764443 TCGTTATGGATTTTCCTAGTCTCTTTG 59.236 37.037 0.00 0.00 37.46 2.77
3160 4652 7.764443 CGTTATGGATTTTCCTAGTCTCTTTGA 59.236 37.037 0.00 0.00 37.46 2.69
3186 4702 2.910482 CGATGCCTTGTTTGTTTCATCG 59.090 45.455 7.81 7.81 44.29 3.84
3232 4748 0.460311 GGCGTACTAGATGGTGCTGT 59.540 55.000 0.00 0.00 0.00 4.40
3262 4778 7.064490 GCAATTCTCCAAAAACAAAGAAGTTGA 59.936 33.333 0.00 0.00 39.87 3.18
3319 4835 7.612677 TGATTACTGGAGGTTTTCTCTCTTAC 58.387 38.462 0.00 0.00 42.10 2.34
3320 4836 7.455008 TGATTACTGGAGGTTTTCTCTCTTACT 59.545 37.037 0.00 0.00 42.10 2.24
3321 4837 8.896722 ATTACTGGAGGTTTTCTCTCTTACTA 57.103 34.615 0.00 0.00 42.10 1.82
3322 4838 6.593268 ACTGGAGGTTTTCTCTCTTACTAC 57.407 41.667 0.00 0.00 42.10 2.73
3323 4839 6.316513 ACTGGAGGTTTTCTCTCTTACTACT 58.683 40.000 0.00 0.00 42.10 2.57
3324 4840 7.468496 ACTGGAGGTTTTCTCTCTTACTACTA 58.532 38.462 0.00 0.00 42.10 1.82
3351 4867 5.941948 AAGTTCATCGGAGGTTGTAAAAG 57.058 39.130 0.00 0.00 0.00 2.27
3358 4874 5.952526 TCGGAGGTTGTAAAAGAAAATCC 57.047 39.130 0.00 0.00 0.00 3.01
3366 4882 7.067737 AGGTTGTAAAAGAAAATCCGAGTTGAA 59.932 33.333 0.00 0.00 0.00 2.69
3367 4883 7.703197 GGTTGTAAAAGAAAATCCGAGTTGAAA 59.297 33.333 0.00 0.00 0.00 2.69
3468 4987 1.595929 GCCCAACGACTGAACGGAA 60.596 57.895 0.00 0.00 37.61 4.30
3475 4994 1.677576 ACGACTGAACGGAACACTGTA 59.322 47.619 0.00 0.00 37.61 2.74
3476 4995 2.295349 ACGACTGAACGGAACACTGTAT 59.705 45.455 0.00 0.00 37.61 2.29
3478 4997 3.739300 CGACTGAACGGAACACTGTATTT 59.261 43.478 0.00 0.00 0.00 1.40
3479 4998 4.210537 CGACTGAACGGAACACTGTATTTT 59.789 41.667 0.00 0.00 0.00 1.82
3480 4999 5.277154 CGACTGAACGGAACACTGTATTTTT 60.277 40.000 0.00 0.00 0.00 1.94
3481 5000 6.056428 ACTGAACGGAACACTGTATTTTTC 57.944 37.500 0.00 0.00 0.00 2.29
3482 5001 5.820947 ACTGAACGGAACACTGTATTTTTCT 59.179 36.000 0.00 0.00 0.00 2.52
3483 5002 6.317893 ACTGAACGGAACACTGTATTTTTCTT 59.682 34.615 0.00 0.00 0.00 2.52
3484 5003 6.721321 TGAACGGAACACTGTATTTTTCTTC 58.279 36.000 0.00 0.00 0.00 2.87
3485 5004 6.540914 TGAACGGAACACTGTATTTTTCTTCT 59.459 34.615 0.00 0.00 0.00 2.85
3486 5005 6.937436 ACGGAACACTGTATTTTTCTTCTT 57.063 33.333 0.00 0.00 0.00 2.52
3487 5006 6.956047 ACGGAACACTGTATTTTTCTTCTTC 58.044 36.000 0.00 0.00 0.00 2.87
3488 5007 6.766467 ACGGAACACTGTATTTTTCTTCTTCT 59.234 34.615 0.00 0.00 0.00 2.85
3489 5008 7.041984 ACGGAACACTGTATTTTTCTTCTTCTC 60.042 37.037 0.00 0.00 0.00 2.87
3490 5009 7.171678 CGGAACACTGTATTTTTCTTCTTCTCT 59.828 37.037 0.00 0.00 0.00 3.10
3491 5010 8.286097 GGAACACTGTATTTTTCTTCTTCTCTG 58.714 37.037 0.00 0.00 0.00 3.35
3492 5011 8.964476 AACACTGTATTTTTCTTCTTCTCTGA 57.036 30.769 0.00 0.00 0.00 3.27
3493 5012 8.600449 ACACTGTATTTTTCTTCTTCTCTGAG 57.400 34.615 0.00 0.00 0.00 3.35
3494 5013 7.172361 ACACTGTATTTTTCTTCTTCTCTGAGC 59.828 37.037 0.00 0.00 0.00 4.26
3495 5014 7.387397 CACTGTATTTTTCTTCTTCTCTGAGCT 59.613 37.037 0.00 0.00 0.00 4.09
3496 5015 8.589338 ACTGTATTTTTCTTCTTCTCTGAGCTA 58.411 33.333 0.00 0.00 0.00 3.32
3497 5016 9.429359 CTGTATTTTTCTTCTTCTCTGAGCTAA 57.571 33.333 0.00 0.00 0.00 3.09
3498 5017 9.429359 TGTATTTTTCTTCTTCTCTGAGCTAAG 57.571 33.333 0.00 0.00 0.00 2.18
3499 5018 9.646427 GTATTTTTCTTCTTCTCTGAGCTAAGA 57.354 33.333 0.00 0.00 0.00 2.10
3501 5020 7.954788 TTTTCTTCTTCTCTGAGCTAAGAAC 57.045 36.000 19.42 0.00 35.02 3.01
3502 5021 5.303747 TCTTCTTCTCTGAGCTAAGAACG 57.696 43.478 14.22 11.53 35.02 3.95
3503 5022 4.156922 TCTTCTTCTCTGAGCTAAGAACGG 59.843 45.833 14.22 8.59 35.02 4.44
3504 5023 3.687125 TCTTCTCTGAGCTAAGAACGGA 58.313 45.455 1.42 0.00 0.00 4.69
3505 5024 4.079970 TCTTCTCTGAGCTAAGAACGGAA 58.920 43.478 1.42 1.89 0.00 4.30
3506 5025 3.851976 TCTCTGAGCTAAGAACGGAAC 57.148 47.619 1.42 0.00 0.00 3.62
3507 5026 3.154710 TCTCTGAGCTAAGAACGGAACA 58.845 45.455 1.42 0.00 0.00 3.18
3508 5027 3.057456 TCTCTGAGCTAAGAACGGAACAC 60.057 47.826 1.42 0.00 0.00 3.32
3509 5028 2.891580 TCTGAGCTAAGAACGGAACACT 59.108 45.455 0.00 0.00 0.00 3.55
3510 5029 2.989840 CTGAGCTAAGAACGGAACACTG 59.010 50.000 0.00 0.00 0.00 3.66
3511 5030 2.364324 TGAGCTAAGAACGGAACACTGT 59.636 45.455 0.00 0.00 0.00 3.55
3512 5031 3.181469 TGAGCTAAGAACGGAACACTGTT 60.181 43.478 0.00 0.00 36.06 3.16
3513 5032 3.131396 AGCTAAGAACGGAACACTGTTG 58.869 45.455 0.00 0.00 33.89 3.33
3514 5033 2.870411 GCTAAGAACGGAACACTGTTGT 59.130 45.455 0.00 0.00 37.67 3.32
3516 5035 2.684001 AGAACGGAACACTGTTGTGA 57.316 45.000 0.00 0.00 46.55 3.58
3526 5045 5.179555 GGAACACTGTTGTGAAGGATAAGAC 59.820 44.000 0.00 0.00 46.55 3.01
3534 5053 3.055819 TGTGAAGGATAAGACAGCTGGAC 60.056 47.826 19.93 11.75 0.00 4.02
3570 5089 3.622166 AACCCGGCCCGAAATATATAG 57.378 47.619 3.71 0.00 0.00 1.31
3571 5090 2.823959 ACCCGGCCCGAAATATATAGA 58.176 47.619 3.71 0.00 0.00 1.98
3574 5093 4.226620 ACCCGGCCCGAAATATATAGATTT 59.773 41.667 3.71 5.03 0.00 2.17
3575 5094 4.574828 CCCGGCCCGAAATATATAGATTTG 59.425 45.833 3.71 3.43 0.00 2.32
3576 5095 4.574828 CCGGCCCGAAATATATAGATTTGG 59.425 45.833 3.71 8.68 0.00 3.28
3577 5096 5.183228 CGGCCCGAAATATATAGATTTGGT 58.817 41.667 9.98 0.00 0.00 3.67
3578 5097 5.646360 CGGCCCGAAATATATAGATTTGGTT 59.354 40.000 9.98 0.00 0.00 3.67
3579 5098 6.819649 CGGCCCGAAATATATAGATTTGGTTA 59.180 38.462 9.98 0.00 0.00 2.85
3580 5099 7.201582 CGGCCCGAAATATATAGATTTGGTTAC 60.202 40.741 9.98 1.54 0.00 2.50
3581 5100 7.608761 GGCCCGAAATATATAGATTTGGTTACA 59.391 37.037 9.98 0.00 0.00 2.41
3582 5101 8.665685 GCCCGAAATATATAGATTTGGTTACAG 58.334 37.037 9.98 0.00 0.00 2.74
3583 5102 9.938280 CCCGAAATATATAGATTTGGTTACAGA 57.062 33.333 9.98 0.00 0.00 3.41
3669 5224 3.792716 GCCACCAGCAATGTTACAC 57.207 52.632 0.00 0.00 42.97 2.90
3670 5225 0.958091 GCCACCAGCAATGTTACACA 59.042 50.000 0.00 0.00 42.97 3.72
3671 5226 1.068333 GCCACCAGCAATGTTACACAG 60.068 52.381 0.00 0.00 42.97 3.66
3672 5227 2.503331 CCACCAGCAATGTTACACAGA 58.497 47.619 0.00 0.00 0.00 3.41
3673 5228 2.226437 CCACCAGCAATGTTACACAGAC 59.774 50.000 0.00 0.00 0.00 3.51
3674 5229 2.877786 CACCAGCAATGTTACACAGACA 59.122 45.455 0.00 0.00 0.00 3.41
3675 5230 2.878406 ACCAGCAATGTTACACAGACAC 59.122 45.455 0.00 0.00 0.00 3.67
3676 5231 2.877786 CCAGCAATGTTACACAGACACA 59.122 45.455 0.00 0.00 0.00 3.72
3677 5232 3.058708 CCAGCAATGTTACACAGACACAG 60.059 47.826 0.00 0.00 0.00 3.66
3678 5233 3.561310 CAGCAATGTTACACAGACACAGT 59.439 43.478 0.00 0.00 0.00 3.55
3679 5234 3.809832 AGCAATGTTACACAGACACAGTC 59.190 43.478 0.00 0.00 0.00 3.51
3680 5235 3.559655 GCAATGTTACACAGACACAGTCA 59.440 43.478 0.00 0.00 34.60 3.41
3681 5236 4.552767 GCAATGTTACACAGACACAGTCAC 60.553 45.833 0.00 0.00 34.60 3.67
3682 5237 4.672587 ATGTTACACAGACACAGTCACT 57.327 40.909 0.00 0.00 34.60 3.41
3683 5238 3.780902 TGTTACACAGACACAGTCACTG 58.219 45.455 2.22 2.22 34.60 3.66
3684 5239 2.509052 TACACAGACACAGTCACTGC 57.491 50.000 4.13 0.00 34.37 4.40
3685 5240 0.179073 ACACAGACACAGTCACTGCC 60.179 55.000 4.13 0.00 34.37 4.85
3686 5241 0.179076 CACAGACACAGTCACTGCCA 60.179 55.000 4.13 0.00 34.37 4.92
3687 5242 0.541392 ACAGACACAGTCACTGCCAA 59.459 50.000 4.13 0.00 34.37 4.52
3688 5243 1.224075 CAGACACAGTCACTGCCAAG 58.776 55.000 4.13 0.00 34.37 3.61
3689 5244 1.123077 AGACACAGTCACTGCCAAGA 58.877 50.000 4.13 0.00 34.37 3.02
3690 5245 1.069823 AGACACAGTCACTGCCAAGAG 59.930 52.381 4.13 0.00 34.37 2.85
3691 5246 0.107456 ACACAGTCACTGCCAAGAGG 59.893 55.000 4.13 0.00 34.37 3.69
3692 5247 0.604780 CACAGTCACTGCCAAGAGGG 60.605 60.000 4.13 0.00 34.37 4.30
3693 5248 1.002868 CAGTCACTGCCAAGAGGGG 60.003 63.158 0.00 0.00 37.04 4.79
3694 5249 1.152030 AGTCACTGCCAAGAGGGGA 60.152 57.895 0.00 0.00 37.04 4.81
3695 5250 1.003233 GTCACTGCCAAGAGGGGAC 60.003 63.158 0.00 0.00 37.04 4.46
3696 5251 1.461268 TCACTGCCAAGAGGGGACA 60.461 57.895 0.00 0.00 37.04 4.02
3697 5252 1.302832 CACTGCCAAGAGGGGACAC 60.303 63.158 0.00 0.00 37.04 3.67
3698 5253 2.046892 CTGCCAAGAGGGGACACG 60.047 66.667 0.00 0.00 37.04 4.49
3699 5254 4.329545 TGCCAAGAGGGGACACGC 62.330 66.667 0.00 0.00 37.04 5.34
3701 5256 4.760047 CCAAGAGGGGACACGCGG 62.760 72.222 12.47 1.27 34.23 6.46
3712 5267 4.988598 CACGCGGCAACACCCTCT 62.989 66.667 12.47 0.00 33.26 3.69
3713 5268 4.250305 ACGCGGCAACACCCTCTT 62.250 61.111 12.47 0.00 33.26 2.85
3714 5269 2.978010 CGCGGCAACACCCTCTTT 60.978 61.111 0.00 0.00 33.26 2.52
3715 5270 2.954611 GCGGCAACACCCTCTTTC 59.045 61.111 0.00 0.00 33.26 2.62
3716 5271 1.896660 GCGGCAACACCCTCTTTCA 60.897 57.895 0.00 0.00 33.26 2.69
3717 5272 1.949257 CGGCAACACCCTCTTTCAC 59.051 57.895 0.00 0.00 33.26 3.18
3718 5273 0.817634 CGGCAACACCCTCTTTCACA 60.818 55.000 0.00 0.00 33.26 3.58
3719 5274 0.668535 GGCAACACCCTCTTTCACAC 59.331 55.000 0.00 0.00 0.00 3.82
3720 5275 1.388547 GCAACACCCTCTTTCACACA 58.611 50.000 0.00 0.00 0.00 3.72
3721 5276 1.065551 GCAACACCCTCTTTCACACAC 59.934 52.381 0.00 0.00 0.00 3.82
3722 5277 1.676006 CAACACCCTCTTTCACACACC 59.324 52.381 0.00 0.00 0.00 4.16
3723 5278 0.182775 ACACCCTCTTTCACACACCC 59.817 55.000 0.00 0.00 0.00 4.61
3724 5279 0.182537 CACCCTCTTTCACACACCCA 59.817 55.000 0.00 0.00 0.00 4.51
3725 5280 0.182775 ACCCTCTTTCACACACCCAC 59.817 55.000 0.00 0.00 0.00 4.61
3726 5281 0.182537 CCCTCTTTCACACACCCACA 59.817 55.000 0.00 0.00 0.00 4.17
3727 5282 1.597742 CCTCTTTCACACACCCACAG 58.402 55.000 0.00 0.00 0.00 3.66
3728 5283 1.597742 CTCTTTCACACACCCACAGG 58.402 55.000 0.00 0.00 40.04 4.00
3738 5293 3.319198 CCCACAGGTGTACGGCCT 61.319 66.667 0.00 3.25 36.66 5.19
3743 5298 3.319198 AGGTGTACGGCCTGGTGG 61.319 66.667 0.00 0.00 34.56 4.61
3744 5299 3.315949 GGTGTACGGCCTGGTGGA 61.316 66.667 0.00 0.00 34.57 4.02
3745 5300 2.666098 GGTGTACGGCCTGGTGGAT 61.666 63.158 0.00 0.00 34.57 3.41
3746 5301 1.449601 GTGTACGGCCTGGTGGATG 60.450 63.158 0.00 0.00 34.57 3.51
3747 5302 1.916273 TGTACGGCCTGGTGGATGT 60.916 57.895 0.00 0.00 34.57 3.06
3748 5303 0.615261 TGTACGGCCTGGTGGATGTA 60.615 55.000 0.00 0.00 34.57 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 5.606505 GGCAGAACCCTTTCACAATTTAAA 58.393 37.500 0.00 0.00 33.72 1.52
13 14 0.955919 CAGACCGGCAGAACCCTTTC 60.956 60.000 0.00 0.00 33.26 2.62
121 122 1.134280 CCATCCACCACAGATCAGACC 60.134 57.143 0.00 0.00 0.00 3.85
144 145 3.181469 TGTGACCTCACCTGTCAAGTAAC 60.181 47.826 2.98 0.00 45.88 2.50
155 319 2.496899 ATGATGGTTGTGACCTCACC 57.503 50.000 2.98 0.00 46.66 4.02
178 343 0.596082 ACAAATAACTGTGGCGCACC 59.404 50.000 10.83 0.00 32.73 5.01
212 377 6.071952 CCAAAGACTTGCCTATTACATGTTGT 60.072 38.462 2.30 0.00 0.00 3.32
374 1414 7.078249 ACCCATATGAGTACATATTCAAGCA 57.922 36.000 3.65 0.00 44.33 3.91
609 1921 5.774690 AGCAGATAGTAGCAGCTCTTTAGAT 59.225 40.000 0.00 0.00 0.00 1.98
613 1925 4.038642 GGTAGCAGATAGTAGCAGCTCTTT 59.961 45.833 8.71 0.00 36.80 2.52
671 1983 8.894409 TTTGCAATTATATCAGAACGAAACTG 57.106 30.769 0.00 0.00 36.80 3.16
759 2071 7.094805 GCTACAATGTATTCTTGAACCAGTTCA 60.095 37.037 9.12 9.12 46.72 3.18
882 2194 7.933215 ATAATACCACCCAAGTTCTACAAAC 57.067 36.000 0.00 0.00 0.00 2.93
995 2307 0.464036 CTCCGCACTAGCCATGGTAA 59.536 55.000 14.67 0.34 37.52 2.85
1663 3061 6.602406 GCTGAATAGGCAGAAATATCATCCAT 59.398 38.462 0.00 0.00 38.14 3.41
1811 3221 1.470890 GCATACAAACCAAGCGCCTTA 59.529 47.619 2.29 0.00 0.00 2.69
2325 3788 2.906389 ACTACAACAAGGGATCAGCTGA 59.094 45.455 20.79 20.79 0.00 4.26
2386 3852 2.314323 AAGCACAAACAAAAGCAGGG 57.686 45.000 0.00 0.00 0.00 4.45
2472 3941 9.807921 GGATAAAATGATACTAATTCAGGGGAA 57.192 33.333 0.00 0.00 37.45 3.97
2586 4056 0.820074 TTTGGTAAGCCCACACACCG 60.820 55.000 0.00 0.00 45.19 4.94
2756 4226 0.172578 TGTCGCGTCTAAGGACATGG 59.827 55.000 5.77 0.00 42.21 3.66
2776 4246 2.027561 TCTGGAAATTGGTACCCACTCG 60.028 50.000 10.07 0.00 30.78 4.18
2826 4306 1.926510 TGCATCGAAATCACACGCTAG 59.073 47.619 0.00 0.00 0.00 3.42
2831 4311 3.542875 CGAGATGTGCATCGAAATCACAC 60.543 47.826 16.40 9.03 42.59 3.82
2832 4312 2.604462 CGAGATGTGCATCGAAATCACA 59.396 45.455 16.40 16.40 43.72 3.58
2914 4398 2.064434 TGCATCACAAACCACCAAGA 57.936 45.000 0.00 0.00 0.00 3.02
2941 4425 3.005554 CAACATGTGCTGCTAGCTACTT 58.994 45.455 17.23 7.90 42.97 2.24
2994 4486 2.300437 ACTACACTTGAACAGGAGGCTC 59.700 50.000 5.78 5.78 0.00 4.70
3006 4498 7.282450 AGTTTAACAGGGAAGAAACTACACTTG 59.718 37.037 0.00 0.00 39.67 3.16
3025 4517 6.131544 ACACCTCATGTTTGTCAGTTTAAC 57.868 37.500 0.00 0.00 38.98 2.01
3026 4518 5.883115 TGACACCTCATGTTTGTCAGTTTAA 59.117 36.000 17.27 1.35 43.63 1.52
3027 4519 5.432645 TGACACCTCATGTTTGTCAGTTTA 58.567 37.500 17.27 1.87 43.63 2.01
3028 4520 4.269183 TGACACCTCATGTTTGTCAGTTT 58.731 39.130 17.27 0.00 43.63 2.66
3029 4521 3.884895 TGACACCTCATGTTTGTCAGTT 58.115 40.909 17.27 0.00 43.63 3.16
3030 4522 3.558931 TGACACCTCATGTTTGTCAGT 57.441 42.857 17.27 0.39 43.63 3.41
3032 4524 3.205338 CAGTGACACCTCATGTTTGTCA 58.795 45.455 17.27 17.27 45.71 3.58
3033 4525 2.031682 GCAGTGACACCTCATGTTTGTC 60.032 50.000 0.84 13.71 43.56 3.18
3034 4526 1.949525 GCAGTGACACCTCATGTTTGT 59.050 47.619 0.84 0.00 43.56 2.83
3035 4527 2.031420 CAGCAGTGACACCTCATGTTTG 60.031 50.000 0.84 0.00 43.56 2.93
3083 4575 5.063880 TCTGGGAACAAAAAGCTCTACTTC 58.936 41.667 0.00 0.00 42.06 3.01
3128 4620 9.110502 AGACTAGGAAAATCCATAACGAAAATC 57.889 33.333 0.00 0.00 39.61 2.17
3138 4630 7.865820 TCATCAAAGAGACTAGGAAAATCCAT 58.134 34.615 0.00 0.00 39.61 3.41
3139 4631 7.257790 TCATCAAAGAGACTAGGAAAATCCA 57.742 36.000 0.00 0.00 39.61 3.41
3140 4632 7.170658 CGATCATCAAAGAGACTAGGAAAATCC 59.829 40.741 0.00 0.00 36.58 3.01
3141 4633 7.923344 TCGATCATCAAAGAGACTAGGAAAATC 59.077 37.037 0.00 0.00 0.00 2.17
3142 4634 7.786030 TCGATCATCAAAGAGACTAGGAAAAT 58.214 34.615 0.00 0.00 0.00 1.82
3145 4637 6.737070 GCATCGATCATCAAAGAGACTAGGAA 60.737 42.308 0.00 0.00 0.00 3.36
3146 4638 5.278709 GCATCGATCATCAAAGAGACTAGGA 60.279 44.000 0.00 0.00 0.00 2.94
3147 4639 4.922692 GCATCGATCATCAAAGAGACTAGG 59.077 45.833 0.00 0.00 0.00 3.02
3148 4640 4.922692 GGCATCGATCATCAAAGAGACTAG 59.077 45.833 0.00 0.00 0.00 2.57
3149 4641 4.586421 AGGCATCGATCATCAAAGAGACTA 59.414 41.667 0.00 0.00 0.00 2.59
3150 4642 3.387374 AGGCATCGATCATCAAAGAGACT 59.613 43.478 0.00 0.00 0.00 3.24
3152 4644 4.124970 CAAGGCATCGATCATCAAAGAGA 58.875 43.478 0.00 0.00 0.00 3.10
3153 4645 3.875727 ACAAGGCATCGATCATCAAAGAG 59.124 43.478 0.00 0.00 0.00 2.85
3154 4646 3.877559 ACAAGGCATCGATCATCAAAGA 58.122 40.909 0.00 0.00 0.00 2.52
3155 4647 4.627611 AACAAGGCATCGATCATCAAAG 57.372 40.909 0.00 0.00 0.00 2.77
3158 4650 3.346315 ACAAACAAGGCATCGATCATCA 58.654 40.909 0.00 0.00 0.00 3.07
3159 4651 4.361451 AACAAACAAGGCATCGATCATC 57.639 40.909 0.00 0.00 0.00 2.92
3160 4652 4.218200 TGAAACAAACAAGGCATCGATCAT 59.782 37.500 0.00 0.00 0.00 2.45
3186 4702 1.017387 GGGATCAACATCGCAGGTTC 58.983 55.000 0.00 0.00 40.85 3.62
3232 4748 6.580788 TCTTTGTTTTTGGAGAATTGCATGA 58.419 32.000 0.00 0.00 0.00 3.07
3278 4794 2.322355 ATCATCTGTGCCACTGCTAC 57.678 50.000 0.00 0.00 38.71 3.58
3319 4835 7.098074 ACCTCCGATGAACTTTAGTTAGTAG 57.902 40.000 0.00 0.00 38.56 2.57
3320 4836 7.039504 ACAACCTCCGATGAACTTTAGTTAGTA 60.040 37.037 0.00 0.00 38.56 1.82
3321 4837 5.997384 ACCTCCGATGAACTTTAGTTAGT 57.003 39.130 0.00 0.00 38.56 2.24
3322 4838 6.164176 ACAACCTCCGATGAACTTTAGTTAG 58.836 40.000 0.00 0.00 38.56 2.34
3323 4839 6.105397 ACAACCTCCGATGAACTTTAGTTA 57.895 37.500 0.00 0.00 38.56 2.24
3324 4840 4.969484 ACAACCTCCGATGAACTTTAGTT 58.031 39.130 0.00 0.00 41.64 2.24
3450 4969 1.595929 TTCCGTTCAGTCGTTGGGC 60.596 57.895 0.00 0.00 0.00 5.36
3468 4987 7.172361 GCTCAGAGAAGAAGAAAAATACAGTGT 59.828 37.037 0.00 0.00 0.00 3.55
3475 4994 8.998377 GTTCTTAGCTCAGAGAAGAAGAAAAAT 58.002 33.333 17.15 0.00 39.28 1.82
3476 4995 7.169982 CGTTCTTAGCTCAGAGAAGAAGAAAAA 59.830 37.037 17.15 1.61 39.28 1.94
3478 4997 6.153067 CGTTCTTAGCTCAGAGAAGAAGAAA 58.847 40.000 17.15 5.80 39.28 2.52
3479 4998 5.336055 CCGTTCTTAGCTCAGAGAAGAAGAA 60.336 44.000 12.52 13.19 39.28 2.52
3480 4999 4.156922 CCGTTCTTAGCTCAGAGAAGAAGA 59.843 45.833 12.52 8.95 39.28 2.87
3481 5000 4.156922 TCCGTTCTTAGCTCAGAGAAGAAG 59.843 45.833 12.52 7.13 39.28 2.85
3482 5001 4.079970 TCCGTTCTTAGCTCAGAGAAGAA 58.920 43.478 0.00 5.94 36.97 2.52
3483 5002 3.687125 TCCGTTCTTAGCTCAGAGAAGA 58.313 45.455 0.00 0.00 32.91 2.87
3484 5003 4.170256 GTTCCGTTCTTAGCTCAGAGAAG 58.830 47.826 0.00 0.00 32.91 2.85
3485 5004 3.572682 TGTTCCGTTCTTAGCTCAGAGAA 59.427 43.478 0.00 0.00 0.00 2.87
3486 5005 3.057456 GTGTTCCGTTCTTAGCTCAGAGA 60.057 47.826 0.00 0.00 0.00 3.10
3487 5006 3.057174 AGTGTTCCGTTCTTAGCTCAGAG 60.057 47.826 0.00 0.00 0.00 3.35
3488 5007 2.891580 AGTGTTCCGTTCTTAGCTCAGA 59.108 45.455 0.00 0.00 0.00 3.27
3489 5008 2.989840 CAGTGTTCCGTTCTTAGCTCAG 59.010 50.000 0.00 0.00 0.00 3.35
3490 5009 2.364324 ACAGTGTTCCGTTCTTAGCTCA 59.636 45.455 0.00 0.00 0.00 4.26
3491 5010 3.027974 ACAGTGTTCCGTTCTTAGCTC 57.972 47.619 0.00 0.00 0.00 4.09
3492 5011 3.131396 CAACAGTGTTCCGTTCTTAGCT 58.869 45.455 5.27 0.00 0.00 3.32
3493 5012 2.870411 ACAACAGTGTTCCGTTCTTAGC 59.130 45.455 5.27 0.00 32.58 3.09
3494 5013 4.116961 TCACAACAGTGTTCCGTTCTTAG 58.883 43.478 5.27 0.00 35.07 2.18
3495 5014 4.126208 TCACAACAGTGTTCCGTTCTTA 57.874 40.909 5.27 0.00 35.07 2.10
3496 5015 2.980568 TCACAACAGTGTTCCGTTCTT 58.019 42.857 5.27 0.00 35.07 2.52
3497 5016 2.684001 TCACAACAGTGTTCCGTTCT 57.316 45.000 5.27 0.00 35.07 3.01
3498 5017 2.031683 CCTTCACAACAGTGTTCCGTTC 59.968 50.000 5.27 0.00 35.07 3.95
3499 5018 2.014128 CCTTCACAACAGTGTTCCGTT 58.986 47.619 5.27 0.00 35.07 4.44
3500 5019 1.208535 TCCTTCACAACAGTGTTCCGT 59.791 47.619 5.27 0.00 35.07 4.69
3501 5020 1.948104 TCCTTCACAACAGTGTTCCG 58.052 50.000 5.27 0.00 35.07 4.30
3502 5021 5.179555 GTCTTATCCTTCACAACAGTGTTCC 59.820 44.000 5.27 0.00 35.07 3.62
3503 5022 5.758296 TGTCTTATCCTTCACAACAGTGTTC 59.242 40.000 5.27 0.00 35.07 3.18
3504 5023 5.680619 TGTCTTATCCTTCACAACAGTGTT 58.319 37.500 1.64 1.64 35.07 3.32
3505 5024 5.290493 TGTCTTATCCTTCACAACAGTGT 57.710 39.130 0.00 0.00 39.07 3.55
3506 5025 4.153117 GCTGTCTTATCCTTCACAACAGTG 59.847 45.833 0.00 0.00 36.05 3.66
3507 5026 4.040952 AGCTGTCTTATCCTTCACAACAGT 59.959 41.667 0.00 0.00 36.05 3.55
3508 5027 4.391216 CAGCTGTCTTATCCTTCACAACAG 59.609 45.833 5.25 0.00 36.58 3.16
3509 5028 4.318332 CAGCTGTCTTATCCTTCACAACA 58.682 43.478 5.25 0.00 0.00 3.33
3510 5029 3.686726 CCAGCTGTCTTATCCTTCACAAC 59.313 47.826 13.81 0.00 0.00 3.32
3511 5030 3.582647 TCCAGCTGTCTTATCCTTCACAA 59.417 43.478 13.81 0.00 0.00 3.33
3512 5031 3.055819 GTCCAGCTGTCTTATCCTTCACA 60.056 47.826 13.81 0.00 0.00 3.58
3513 5032 3.196685 AGTCCAGCTGTCTTATCCTTCAC 59.803 47.826 13.81 0.00 0.00 3.18
3514 5033 3.445008 AGTCCAGCTGTCTTATCCTTCA 58.555 45.455 13.81 0.00 0.00 3.02
3515 5034 4.161377 AGAAGTCCAGCTGTCTTATCCTTC 59.839 45.833 13.81 11.72 0.00 3.46
3516 5035 4.081198 CAGAAGTCCAGCTGTCTTATCCTT 60.081 45.833 13.81 3.50 0.00 3.36
3526 5045 1.638133 CATCGACAGAAGTCCAGCTG 58.362 55.000 6.78 6.78 41.87 4.24
3534 5053 3.123804 CGGGTTAATCCATCGACAGAAG 58.876 50.000 5.41 0.00 38.11 2.85
3541 5060 1.599797 GGGCCGGGTTAATCCATCG 60.600 63.158 2.18 0.00 38.11 3.84
3570 5089 5.006165 CGAGAGCTTGATCTGTAACCAAATC 59.994 44.000 0.00 0.00 0.00 2.17
3571 5090 4.872691 CGAGAGCTTGATCTGTAACCAAAT 59.127 41.667 0.00 0.00 0.00 2.32
3574 5093 2.826128 ACGAGAGCTTGATCTGTAACCA 59.174 45.455 0.00 0.00 0.00 3.67
3575 5094 3.440228 GACGAGAGCTTGATCTGTAACC 58.560 50.000 0.00 0.00 0.00 2.85
3576 5095 3.129638 AGGACGAGAGCTTGATCTGTAAC 59.870 47.826 0.00 0.00 0.00 2.50
3577 5096 3.357203 AGGACGAGAGCTTGATCTGTAA 58.643 45.455 0.00 0.00 0.00 2.41
3578 5097 2.946329 GAGGACGAGAGCTTGATCTGTA 59.054 50.000 0.00 0.00 0.00 2.74
3579 5098 1.748493 GAGGACGAGAGCTTGATCTGT 59.252 52.381 0.00 0.00 0.00 3.41
3580 5099 1.268488 CGAGGACGAGAGCTTGATCTG 60.268 57.143 0.00 0.00 42.66 2.90
3581 5100 1.021202 CGAGGACGAGAGCTTGATCT 58.979 55.000 0.00 0.00 42.66 2.75
3582 5101 0.736053 ACGAGGACGAGAGCTTGATC 59.264 55.000 0.00 0.00 42.66 2.92
3583 5102 1.944024 CTACGAGGACGAGAGCTTGAT 59.056 52.381 0.00 0.00 42.66 2.57
3584 5103 1.066358 TCTACGAGGACGAGAGCTTGA 60.066 52.381 0.00 0.00 42.66 3.02
3662 5217 3.983219 GCAGTGACTGTGTCTGTGTAACA 60.983 47.826 14.82 0.00 38.05 2.41
3663 5218 2.540101 GCAGTGACTGTGTCTGTGTAAC 59.460 50.000 14.82 0.00 33.43 2.50
3664 5219 2.483013 GGCAGTGACTGTGTCTGTGTAA 60.483 50.000 14.82 0.00 33.43 2.41
3665 5220 1.068588 GGCAGTGACTGTGTCTGTGTA 59.931 52.381 14.82 0.00 33.43 2.90
3666 5221 0.179073 GGCAGTGACTGTGTCTGTGT 60.179 55.000 14.82 0.00 33.43 3.72
3667 5222 0.179076 TGGCAGTGACTGTGTCTGTG 60.179 55.000 14.82 0.00 33.43 3.66
3668 5223 0.541392 TTGGCAGTGACTGTGTCTGT 59.459 50.000 14.82 0.00 33.43 3.41
3669 5224 1.202568 TCTTGGCAGTGACTGTGTCTG 60.203 52.381 14.82 1.91 33.43 3.51
3670 5225 1.069823 CTCTTGGCAGTGACTGTGTCT 59.930 52.381 14.82 0.00 33.43 3.41
3671 5226 1.506493 CTCTTGGCAGTGACTGTGTC 58.494 55.000 14.82 5.25 33.43 3.67
3672 5227 0.107456 CCTCTTGGCAGTGACTGTGT 59.893 55.000 14.82 0.00 33.43 3.72
3673 5228 0.604780 CCCTCTTGGCAGTGACTGTG 60.605 60.000 14.82 2.93 33.43 3.66
3674 5229 1.757306 CCCTCTTGGCAGTGACTGT 59.243 57.895 14.82 0.00 33.43 3.55
3675 5230 1.002868 CCCCTCTTGGCAGTGACTG 60.003 63.158 8.52 8.52 34.12 3.51
3676 5231 1.152030 TCCCCTCTTGGCAGTGACT 60.152 57.895 0.00 0.00 0.00 3.41
3677 5232 1.003233 GTCCCCTCTTGGCAGTGAC 60.003 63.158 0.00 0.00 0.00 3.67
3678 5233 1.461268 TGTCCCCTCTTGGCAGTGA 60.461 57.895 0.00 0.00 0.00 3.41
3679 5234 1.302832 GTGTCCCCTCTTGGCAGTG 60.303 63.158 0.00 0.00 0.00 3.66
3680 5235 2.883828 CGTGTCCCCTCTTGGCAGT 61.884 63.158 0.00 0.00 0.00 4.40
3681 5236 2.046892 CGTGTCCCCTCTTGGCAG 60.047 66.667 0.00 0.00 0.00 4.85
3682 5237 4.329545 GCGTGTCCCCTCTTGGCA 62.330 66.667 0.00 0.00 0.00 4.92
3684 5239 4.760047 CCGCGTGTCCCCTCTTGG 62.760 72.222 4.92 0.00 0.00 3.61
3695 5250 4.988598 AGAGGGTGTTGCCGCGTG 62.989 66.667 4.92 0.00 38.44 5.34
3696 5251 3.767630 AAAGAGGGTGTTGCCGCGT 62.768 57.895 4.92 0.00 38.44 6.01
3697 5252 2.966309 GAAAGAGGGTGTTGCCGCG 61.966 63.158 0.00 0.00 38.44 6.46
3698 5253 1.896660 TGAAAGAGGGTGTTGCCGC 60.897 57.895 0.00 0.00 38.44 6.53
3699 5254 0.817634 TGTGAAAGAGGGTGTTGCCG 60.818 55.000 0.00 0.00 38.44 5.69
3700 5255 0.668535 GTGTGAAAGAGGGTGTTGCC 59.331 55.000 0.00 0.00 0.00 4.52
3701 5256 1.065551 GTGTGTGAAAGAGGGTGTTGC 59.934 52.381 0.00 0.00 0.00 4.17
3702 5257 1.676006 GGTGTGTGAAAGAGGGTGTTG 59.324 52.381 0.00 0.00 0.00 3.33
3703 5258 1.409661 GGGTGTGTGAAAGAGGGTGTT 60.410 52.381 0.00 0.00 0.00 3.32
3704 5259 0.182775 GGGTGTGTGAAAGAGGGTGT 59.817 55.000 0.00 0.00 0.00 4.16
3705 5260 0.182537 TGGGTGTGTGAAAGAGGGTG 59.817 55.000 0.00 0.00 0.00 4.61
3706 5261 0.182775 GTGGGTGTGTGAAAGAGGGT 59.817 55.000 0.00 0.00 0.00 4.34
3707 5262 0.182537 TGTGGGTGTGTGAAAGAGGG 59.817 55.000 0.00 0.00 0.00 4.30
3708 5263 1.597742 CTGTGGGTGTGTGAAAGAGG 58.402 55.000 0.00 0.00 0.00 3.69
3709 5264 1.134098 ACCTGTGGGTGTGTGAAAGAG 60.134 52.381 0.00 0.00 45.43 2.85
3710 5265 0.916086 ACCTGTGGGTGTGTGAAAGA 59.084 50.000 0.00 0.00 45.43 2.52
3711 5266 3.494850 ACCTGTGGGTGTGTGAAAG 57.505 52.632 0.00 0.00 45.43 2.62
3721 5276 3.319198 AGGCCGTACACCTGTGGG 61.319 66.667 3.66 0.00 35.72 4.61
3726 5281 3.319198 CCACCAGGCCGTACACCT 61.319 66.667 0.00 0.00 38.35 4.00
3727 5282 2.666098 ATCCACCAGGCCGTACACC 61.666 63.158 0.00 0.00 33.74 4.16
3728 5283 1.449601 CATCCACCAGGCCGTACAC 60.450 63.158 0.00 0.00 33.74 2.90
3729 5284 0.615261 TACATCCACCAGGCCGTACA 60.615 55.000 0.00 0.00 33.74 2.90
3730 5285 2.204748 TACATCCACCAGGCCGTAC 58.795 57.895 0.00 0.00 33.74 3.67
3731 5286 4.789899 TACATCCACCAGGCCGTA 57.210 55.556 0.00 0.00 33.74 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.