Multiple sequence alignment - TraesCS4B01G323000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G323000 chr4B 100.000 4084 0 0 1 4084 613373537 613377620 0.000000e+00 7542.0
1 TraesCS4B01G323000 chr4B 93.475 705 45 1 3380 4084 306053905 306053202 0.000000e+00 1046.0
2 TraesCS4B01G323000 chr4D 93.004 2973 121 43 453 3380 483136566 483139496 0.000000e+00 4257.0
3 TraesCS4B01G323000 chr5A 90.832 2596 113 47 706 3241 663304204 663306734 0.000000e+00 3360.0
4 TraesCS4B01G323000 chr5A 87.500 408 31 14 2980 3380 663316722 663317116 1.730000e-123 453.0
5 TraesCS4B01G323000 chr7D 95.372 713 33 0 3372 4084 107049761 107050473 0.000000e+00 1134.0
6 TraesCS4B01G323000 chr1B 93.961 712 40 2 3373 4084 52289403 52290111 0.000000e+00 1074.0
7 TraesCS4B01G323000 chr1B 94.051 706 39 3 3380 4084 232412748 232413451 0.000000e+00 1068.0
8 TraesCS4B01G323000 chr1B 93.023 301 19 1 123 423 50558322 50558620 4.850000e-119 438.0
9 TraesCS4B01G323000 chr5B 93.697 714 44 1 3372 4084 616726012 616725299 0.000000e+00 1068.0
10 TraesCS4B01G323000 chr3B 93.697 714 43 2 3372 4084 188538798 188538086 0.000000e+00 1068.0
11 TraesCS4B01G323000 chr3B 92.131 305 23 1 124 428 154190621 154190318 2.920000e-116 429.0
12 TraesCS4B01G323000 chr3B 91.935 310 19 3 124 431 476006835 476006530 2.920000e-116 429.0
13 TraesCS4B01G323000 chr3B 90.968 310 27 1 115 423 820958555 820958864 2.270000e-112 416.0
14 TraesCS4B01G323000 chr6B 93.557 714 44 2 3372 4084 648684650 648683938 0.000000e+00 1062.0
15 TraesCS4B01G323000 chr6B 93.046 302 20 1 122 423 560196818 560197118 1.350000e-119 440.0
16 TraesCS4B01G323000 chr1D 93.268 713 48 0 3372 4084 325509470 325508758 0.000000e+00 1051.0
17 TraesCS4B01G323000 chr4A 92.997 714 49 1 3372 4084 423427821 423428534 0.000000e+00 1040.0
18 TraesCS4B01G323000 chr3A 91.776 304 25 0 124 427 508191518 508191215 1.360000e-114 424.0
19 TraesCS4B01G323000 chr2B 83.442 459 73 2 2192 2650 488192823 488193278 1.360000e-114 424.0
20 TraesCS4B01G323000 chr7A 91.830 306 19 3 122 427 717077018 717076719 4.880000e-114 422.0
21 TraesCS4B01G323000 chr7A 95.000 40 2 0 2615 2654 671417390 671417429 3.410000e-06 63.9
22 TraesCS4B01G323000 chr3D 91.776 304 24 1 124 427 386614303 386614001 4.880000e-114 422.0
23 TraesCS4B01G323000 chr2D 83.224 459 74 2 2192 2650 414956035 414956490 6.310000e-113 418.0
24 TraesCS4B01G323000 chr7B 90.939 309 25 2 116 424 232740346 232740651 2.940000e-111 412.0
25 TraesCS4B01G323000 chr7B 95.000 40 2 0 2615 2654 645389598 645389637 3.410000e-06 63.9
26 TraesCS4B01G323000 chr2A 83.007 459 75 2 2192 2650 581942091 581942546 2.940000e-111 412.0
27 TraesCS4B01G323000 chr6D 100.000 31 0 0 2627 2657 119138809 119138779 1.590000e-04 58.4
28 TraesCS4B01G323000 chr6A 100.000 31 0 0 2627 2657 147303341 147303311 1.590000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G323000 chr4B 613373537 613377620 4083 False 7542 7542 100.000 1 4084 1 chr4B.!!$F1 4083
1 TraesCS4B01G323000 chr4B 306053202 306053905 703 True 1046 1046 93.475 3380 4084 1 chr4B.!!$R1 704
2 TraesCS4B01G323000 chr4D 483136566 483139496 2930 False 4257 4257 93.004 453 3380 1 chr4D.!!$F1 2927
3 TraesCS4B01G323000 chr5A 663304204 663306734 2530 False 3360 3360 90.832 706 3241 1 chr5A.!!$F1 2535
4 TraesCS4B01G323000 chr7D 107049761 107050473 712 False 1134 1134 95.372 3372 4084 1 chr7D.!!$F1 712
5 TraesCS4B01G323000 chr1B 52289403 52290111 708 False 1074 1074 93.961 3373 4084 1 chr1B.!!$F2 711
6 TraesCS4B01G323000 chr1B 232412748 232413451 703 False 1068 1068 94.051 3380 4084 1 chr1B.!!$F3 704
7 TraesCS4B01G323000 chr5B 616725299 616726012 713 True 1068 1068 93.697 3372 4084 1 chr5B.!!$R1 712
8 TraesCS4B01G323000 chr3B 188538086 188538798 712 True 1068 1068 93.697 3372 4084 1 chr3B.!!$R2 712
9 TraesCS4B01G323000 chr6B 648683938 648684650 712 True 1062 1062 93.557 3372 4084 1 chr6B.!!$R1 712
10 TraesCS4B01G323000 chr1D 325508758 325509470 712 True 1051 1051 93.268 3372 4084 1 chr1D.!!$R1 712
11 TraesCS4B01G323000 chr4A 423427821 423428534 713 False 1040 1040 92.997 3372 4084 1 chr4A.!!$F1 712

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
49 50 0.108424 GTTCCATGCTCTCTCGCTGT 60.108 55.0 0.0 0.00 0.00 4.40 F
51 52 0.108472 TCCATGCTCTCTCGCTGTTG 60.108 55.0 0.0 0.00 0.00 3.33 F
65 66 0.250124 CTGTTGTACACCTTGGCCGA 60.250 55.0 0.0 0.00 0.00 5.54 F
1759 1808 0.478072 AGGAAATCCACAGTGCCACA 59.522 50.0 0.0 0.00 38.89 4.17 F
1976 2026 0.596082 TATGTAGCTAGCGCGCATCA 59.404 50.0 35.1 20.75 42.32 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1964 2014 0.028505 AAAATGCTGATGCGCGCTAG 59.971 50.000 33.29 25.93 43.34 3.42 R
1965 2015 0.451383 AAAAATGCTGATGCGCGCTA 59.549 45.000 33.29 19.04 43.34 4.26 R
1966 2016 1.213537 AAAAATGCTGATGCGCGCT 59.786 47.368 33.29 17.95 43.34 5.92 R
2677 2747 0.110509 CATGCATGTAATCTCGCCGC 60.111 55.000 18.91 0.00 0.00 6.53 R
3156 3231 2.776225 GACAAAACTTCGCACAAGAACG 59.224 45.455 0.00 0.00 0.00 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.411517 CCCCCTCCCGAGCATGTT 61.412 66.667 0.00 0.00 0.00 2.71
18 19 2.677228 CCCCTCCCGAGCATGTTT 59.323 61.111 0.00 0.00 0.00 2.83
19 20 1.750399 CCCCTCCCGAGCATGTTTG 60.750 63.158 0.00 0.00 0.00 2.93
20 21 1.002134 CCCTCCCGAGCATGTTTGT 60.002 57.895 0.00 0.00 0.00 2.83
21 22 0.609131 CCCTCCCGAGCATGTTTGTT 60.609 55.000 0.00 0.00 0.00 2.83
22 23 0.804989 CCTCCCGAGCATGTTTGTTC 59.195 55.000 0.00 0.00 0.00 3.18
23 24 1.611673 CCTCCCGAGCATGTTTGTTCT 60.612 52.381 0.00 0.00 31.43 3.01
24 25 2.154462 CTCCCGAGCATGTTTGTTCTT 58.846 47.619 0.00 0.00 31.43 2.52
25 26 2.151202 TCCCGAGCATGTTTGTTCTTC 58.849 47.619 0.00 0.00 31.43 2.87
26 27 1.200020 CCCGAGCATGTTTGTTCTTCC 59.800 52.381 0.00 0.00 31.43 3.46
27 28 2.154462 CCGAGCATGTTTGTTCTTCCT 58.846 47.619 0.00 0.00 31.43 3.36
28 29 3.334691 CCGAGCATGTTTGTTCTTCCTA 58.665 45.455 0.00 0.00 31.43 2.94
29 30 3.751175 CCGAGCATGTTTGTTCTTCCTAA 59.249 43.478 0.00 0.00 31.43 2.69
30 31 4.142816 CCGAGCATGTTTGTTCTTCCTAAG 60.143 45.833 0.00 0.00 31.43 2.18
31 32 4.452455 CGAGCATGTTTGTTCTTCCTAAGT 59.548 41.667 0.00 0.00 31.43 2.24
32 33 5.049405 CGAGCATGTTTGTTCTTCCTAAGTT 60.049 40.000 0.00 0.00 31.43 2.66
33 34 6.319141 AGCATGTTTGTTCTTCCTAAGTTC 57.681 37.500 0.00 0.00 0.00 3.01
34 35 5.241728 AGCATGTTTGTTCTTCCTAAGTTCC 59.758 40.000 0.00 0.00 0.00 3.62
35 36 5.009610 GCATGTTTGTTCTTCCTAAGTTCCA 59.990 40.000 0.00 0.00 0.00 3.53
36 37 6.294731 GCATGTTTGTTCTTCCTAAGTTCCAT 60.295 38.462 0.00 0.00 0.00 3.41
37 38 6.633500 TGTTTGTTCTTCCTAAGTTCCATG 57.367 37.500 0.00 0.00 0.00 3.66
38 39 5.009610 TGTTTGTTCTTCCTAAGTTCCATGC 59.990 40.000 0.00 0.00 0.00 4.06
39 40 4.640771 TGTTCTTCCTAAGTTCCATGCT 57.359 40.909 0.00 0.00 0.00 3.79
40 41 4.579869 TGTTCTTCCTAAGTTCCATGCTC 58.420 43.478 0.00 0.00 0.00 4.26
41 42 4.287067 TGTTCTTCCTAAGTTCCATGCTCT 59.713 41.667 0.00 0.00 0.00 4.09
42 43 4.744795 TCTTCCTAAGTTCCATGCTCTC 57.255 45.455 0.00 0.00 0.00 3.20
43 44 4.357325 TCTTCCTAAGTTCCATGCTCTCT 58.643 43.478 0.00 0.00 0.00 3.10
44 45 4.404073 TCTTCCTAAGTTCCATGCTCTCTC 59.596 45.833 0.00 0.00 0.00 3.20
45 46 2.690497 TCCTAAGTTCCATGCTCTCTCG 59.310 50.000 0.00 0.00 0.00 4.04
46 47 2.468831 CTAAGTTCCATGCTCTCTCGC 58.531 52.381 0.00 0.00 0.00 5.03
47 48 0.901124 AAGTTCCATGCTCTCTCGCT 59.099 50.000 0.00 0.00 0.00 4.93
48 49 0.175302 AGTTCCATGCTCTCTCGCTG 59.825 55.000 0.00 0.00 0.00 5.18
49 50 0.108424 GTTCCATGCTCTCTCGCTGT 60.108 55.000 0.00 0.00 0.00 4.40
50 51 0.610174 TTCCATGCTCTCTCGCTGTT 59.390 50.000 0.00 0.00 0.00 3.16
51 52 0.108472 TCCATGCTCTCTCGCTGTTG 60.108 55.000 0.00 0.00 0.00 3.33
52 53 0.390866 CCATGCTCTCTCGCTGTTGT 60.391 55.000 0.00 0.00 0.00 3.32
53 54 1.134995 CCATGCTCTCTCGCTGTTGTA 60.135 52.381 0.00 0.00 0.00 2.41
54 55 1.923204 CATGCTCTCTCGCTGTTGTAC 59.077 52.381 0.00 0.00 0.00 2.90
55 56 0.958822 TGCTCTCTCGCTGTTGTACA 59.041 50.000 0.00 0.00 0.00 2.90
56 57 1.335964 TGCTCTCTCGCTGTTGTACAC 60.336 52.381 0.00 0.00 0.00 2.90
57 58 1.983972 CTCTCTCGCTGTTGTACACC 58.016 55.000 0.00 0.00 0.00 4.16
58 59 1.542030 CTCTCTCGCTGTTGTACACCT 59.458 52.381 0.00 0.00 0.00 4.00
59 60 1.961394 TCTCTCGCTGTTGTACACCTT 59.039 47.619 0.00 0.00 0.00 3.50
60 61 2.061773 CTCTCGCTGTTGTACACCTTG 58.938 52.381 0.00 0.00 0.00 3.61
61 62 1.148310 CTCGCTGTTGTACACCTTGG 58.852 55.000 0.00 0.00 0.00 3.61
62 63 0.882927 TCGCTGTTGTACACCTTGGC 60.883 55.000 0.00 0.00 0.00 4.52
63 64 1.852067 CGCTGTTGTACACCTTGGCC 61.852 60.000 0.00 0.00 0.00 5.36
64 65 1.852067 GCTGTTGTACACCTTGGCCG 61.852 60.000 0.00 0.00 0.00 6.13
65 66 0.250124 CTGTTGTACACCTTGGCCGA 60.250 55.000 0.00 0.00 0.00 5.54
66 67 0.533308 TGTTGTACACCTTGGCCGAC 60.533 55.000 0.00 0.00 0.00 4.79
67 68 1.301087 TTGTACACCTTGGCCGACG 60.301 57.895 0.00 0.00 0.00 5.12
68 69 3.116531 GTACACCTTGGCCGACGC 61.117 66.667 0.00 0.00 0.00 5.19
69 70 4.728102 TACACCTTGGCCGACGCG 62.728 66.667 3.53 3.53 35.02 6.01
79 80 4.992511 CCGACGCGACCCCCAAAA 62.993 66.667 15.93 0.00 0.00 2.44
80 81 3.419759 CGACGCGACCCCCAAAAG 61.420 66.667 15.93 0.00 0.00 2.27
81 82 2.031465 GACGCGACCCCCAAAAGA 59.969 61.111 15.93 0.00 0.00 2.52
82 83 2.032071 ACGCGACCCCCAAAAGAG 59.968 61.111 15.93 0.00 0.00 2.85
83 84 2.032071 CGCGACCCCCAAAAGAGT 59.968 61.111 0.00 0.00 0.00 3.24
84 85 1.599797 CGCGACCCCCAAAAGAGTT 60.600 57.895 0.00 0.00 0.00 3.01
85 86 1.170290 CGCGACCCCCAAAAGAGTTT 61.170 55.000 0.00 0.00 0.00 2.66
86 87 1.037493 GCGACCCCCAAAAGAGTTTT 58.963 50.000 0.00 0.00 0.00 2.43
103 104 8.902540 AAGAGTTTTGGTTTCTTTTCTTTTGT 57.097 26.923 0.00 0.00 0.00 2.83
104 105 8.534333 AGAGTTTTGGTTTCTTTTCTTTTGTC 57.466 30.769 0.00 0.00 0.00 3.18
105 106 7.602644 AGAGTTTTGGTTTCTTTTCTTTTGTCC 59.397 33.333 0.00 0.00 0.00 4.02
106 107 7.450074 AGTTTTGGTTTCTTTTCTTTTGTCCT 58.550 30.769 0.00 0.00 0.00 3.85
107 108 8.590204 AGTTTTGGTTTCTTTTCTTTTGTCCTA 58.410 29.630 0.00 0.00 0.00 2.94
108 109 8.653338 GTTTTGGTTTCTTTTCTTTTGTCCTAC 58.347 33.333 0.00 0.00 0.00 3.18
109 110 7.712204 TTGGTTTCTTTTCTTTTGTCCTACT 57.288 32.000 0.00 0.00 0.00 2.57
110 111 7.712204 TGGTTTCTTTTCTTTTGTCCTACTT 57.288 32.000 0.00 0.00 0.00 2.24
111 112 7.543756 TGGTTTCTTTTCTTTTGTCCTACTTG 58.456 34.615 0.00 0.00 0.00 3.16
112 113 6.978659 GGTTTCTTTTCTTTTGTCCTACTTGG 59.021 38.462 0.00 0.00 37.10 3.61
113 114 7.147966 GGTTTCTTTTCTTTTGTCCTACTTGGA 60.148 37.037 0.00 0.00 43.86 3.53
127 128 7.938140 TCCTACTTGGATCACAATTTTAAGG 57.062 36.000 0.00 0.00 40.56 2.69
128 129 6.377146 TCCTACTTGGATCACAATTTTAAGGC 59.623 38.462 0.00 0.00 40.56 4.35
129 130 5.405935 ACTTGGATCACAATTTTAAGGCC 57.594 39.130 0.00 0.00 38.65 5.19
130 131 5.086621 ACTTGGATCACAATTTTAAGGCCT 58.913 37.500 0.00 0.00 38.65 5.19
131 132 5.185828 ACTTGGATCACAATTTTAAGGCCTC 59.814 40.000 5.23 0.00 38.65 4.70
132 133 4.023291 TGGATCACAATTTTAAGGCCTCC 58.977 43.478 5.23 0.00 0.00 4.30
133 134 4.264352 TGGATCACAATTTTAAGGCCTCCT 60.264 41.667 5.23 0.00 33.87 3.69
134 135 4.711846 GGATCACAATTTTAAGGCCTCCTT 59.288 41.667 5.23 3.40 46.63 3.36
135 136 5.187772 GGATCACAATTTTAAGGCCTCCTTT 59.812 40.000 5.23 0.00 41.69 3.11
136 137 5.467035 TCACAATTTTAAGGCCTCCTTTG 57.533 39.130 5.23 8.92 41.69 2.77
137 138 4.283212 TCACAATTTTAAGGCCTCCTTTGG 59.717 41.667 5.23 0.00 41.69 3.28
138 139 4.040339 CACAATTTTAAGGCCTCCTTTGGT 59.960 41.667 5.23 0.00 41.69 3.67
139 140 4.658435 ACAATTTTAAGGCCTCCTTTGGTT 59.342 37.500 5.23 0.00 41.69 3.67
140 141 5.221641 ACAATTTTAAGGCCTCCTTTGGTTC 60.222 40.000 5.23 0.00 41.69 3.62
141 142 3.603965 TTTAAGGCCTCCTTTGGTTCA 57.396 42.857 5.23 0.00 41.69 3.18
142 143 3.825908 TTAAGGCCTCCTTTGGTTCAT 57.174 42.857 5.23 0.00 41.69 2.57
143 144 4.938575 TTAAGGCCTCCTTTGGTTCATA 57.061 40.909 5.23 0.00 41.69 2.15
144 145 3.372440 AAGGCCTCCTTTGGTTCATAG 57.628 47.619 5.23 0.00 41.69 2.23
145 146 1.566231 AGGCCTCCTTTGGTTCATAGG 59.434 52.381 0.00 0.00 34.61 2.57
146 147 1.564348 GGCCTCCTTTGGTTCATAGGA 59.436 52.381 0.00 6.86 38.81 2.94
147 148 2.025321 GGCCTCCTTTGGTTCATAGGAA 60.025 50.000 0.00 0.00 40.12 3.36
148 149 3.373110 GGCCTCCTTTGGTTCATAGGAAT 60.373 47.826 0.00 0.00 40.12 3.01
149 150 4.141251 GGCCTCCTTTGGTTCATAGGAATA 60.141 45.833 0.00 0.00 40.12 1.75
150 151 5.458215 GGCCTCCTTTGGTTCATAGGAATAT 60.458 44.000 0.00 0.00 40.12 1.28
151 152 6.071320 GCCTCCTTTGGTTCATAGGAATATT 58.929 40.000 8.11 0.00 40.12 1.28
152 153 6.015940 GCCTCCTTTGGTTCATAGGAATATTG 60.016 42.308 8.11 0.00 40.12 1.90
153 154 7.062957 CCTCCTTTGGTTCATAGGAATATTGT 58.937 38.462 8.11 0.00 40.12 2.71
154 155 8.217799 CCTCCTTTGGTTCATAGGAATATTGTA 58.782 37.037 8.11 0.00 40.12 2.41
155 156 9.277783 CTCCTTTGGTTCATAGGAATATTGTAG 57.722 37.037 8.11 0.00 40.12 2.74
156 157 8.217799 TCCTTTGGTTCATAGGAATATTGTAGG 58.782 37.037 4.94 0.00 38.33 3.18
157 158 8.217799 CCTTTGGTTCATAGGAATATTGTAGGA 58.782 37.037 0.00 0.00 35.14 2.94
158 159 9.627123 CTTTGGTTCATAGGAATATTGTAGGAA 57.373 33.333 0.00 0.00 35.05 3.36
161 162 9.573166 TGGTTCATAGGAATATTGTAGGAATTG 57.427 33.333 0.00 0.00 35.05 2.32
162 163 8.515414 GGTTCATAGGAATATTGTAGGAATTGC 58.485 37.037 0.00 0.00 35.05 3.56
163 164 9.066892 GTTCATAGGAATATTGTAGGAATTGCA 57.933 33.333 0.00 0.00 35.05 4.08
164 165 9.639563 TTCATAGGAATATTGTAGGAATTGCAA 57.360 29.630 0.00 0.00 35.80 4.08
165 166 9.639563 TCATAGGAATATTGTAGGAATTGCAAA 57.360 29.630 1.71 0.00 34.97 3.68
166 167 9.903682 CATAGGAATATTGTAGGAATTGCAAAG 57.096 33.333 1.71 0.00 34.97 2.77
167 168 7.352079 AGGAATATTGTAGGAATTGCAAAGG 57.648 36.000 1.71 0.00 34.97 3.11
168 169 7.125391 AGGAATATTGTAGGAATTGCAAAGGA 58.875 34.615 1.71 0.00 34.97 3.36
169 170 7.786464 AGGAATATTGTAGGAATTGCAAAGGAT 59.214 33.333 1.71 0.00 34.97 3.24
170 171 9.077885 GGAATATTGTAGGAATTGCAAAGGATA 57.922 33.333 1.71 0.00 34.97 2.59
172 173 9.866655 AATATTGTAGGAATTGCAAAGGATAGA 57.133 29.630 1.71 0.00 34.97 1.98
173 174 9.866655 ATATTGTAGGAATTGCAAAGGATAGAA 57.133 29.630 1.71 0.37 34.97 2.10
174 175 8.593945 ATTGTAGGAATTGCAAAGGATAGAAA 57.406 30.769 1.71 0.00 34.97 2.52
175 176 7.391148 TGTAGGAATTGCAAAGGATAGAAAC 57.609 36.000 1.71 0.00 0.00 2.78
176 177 7.175104 TGTAGGAATTGCAAAGGATAGAAACT 58.825 34.615 1.71 0.00 0.00 2.66
177 178 7.669722 TGTAGGAATTGCAAAGGATAGAAACTT 59.330 33.333 1.71 0.00 0.00 2.66
178 179 7.544804 AGGAATTGCAAAGGATAGAAACTTT 57.455 32.000 1.71 0.00 37.40 2.66
179 180 8.650143 AGGAATTGCAAAGGATAGAAACTTTA 57.350 30.769 1.71 0.00 35.32 1.85
180 181 9.259832 AGGAATTGCAAAGGATAGAAACTTTAT 57.740 29.630 1.71 0.00 35.32 1.40
184 185 9.920946 ATTGCAAAGGATAGAAACTTTATAGGA 57.079 29.630 1.71 0.00 35.32 2.94
185 186 9.747898 TTGCAAAGGATAGAAACTTTATAGGAA 57.252 29.630 0.00 0.00 35.32 3.36
186 187 9.747898 TGCAAAGGATAGAAACTTTATAGGAAA 57.252 29.630 0.00 0.00 35.32 3.13
202 203 3.334583 GGAAAAATTCCTTTGGAGCCC 57.665 47.619 1.86 0.00 46.57 5.19
203 204 2.906389 GGAAAAATTCCTTTGGAGCCCT 59.094 45.455 1.86 0.00 46.57 5.19
204 205 3.327757 GGAAAAATTCCTTTGGAGCCCTT 59.672 43.478 1.86 0.00 46.57 3.95
205 206 4.202461 GGAAAAATTCCTTTGGAGCCCTTT 60.202 41.667 1.86 0.00 46.57 3.11
206 207 4.356405 AAAATTCCTTTGGAGCCCTTTG 57.644 40.909 0.00 0.00 31.21 2.77
207 208 2.999185 ATTCCTTTGGAGCCCTTTGA 57.001 45.000 0.00 0.00 31.21 2.69
208 209 2.999185 TTCCTTTGGAGCCCTTTGAT 57.001 45.000 0.00 0.00 31.21 2.57
209 210 2.999185 TCCTTTGGAGCCCTTTGATT 57.001 45.000 0.00 0.00 0.00 2.57
210 211 3.258722 TCCTTTGGAGCCCTTTGATTT 57.741 42.857 0.00 0.00 0.00 2.17
211 212 2.899256 TCCTTTGGAGCCCTTTGATTTG 59.101 45.455 0.00 0.00 0.00 2.32
212 213 2.634453 CCTTTGGAGCCCTTTGATTTGT 59.366 45.455 0.00 0.00 0.00 2.83
213 214 3.831911 CCTTTGGAGCCCTTTGATTTGTA 59.168 43.478 0.00 0.00 0.00 2.41
214 215 4.082026 CCTTTGGAGCCCTTTGATTTGTAG 60.082 45.833 0.00 0.00 0.00 2.74
215 216 3.085952 TGGAGCCCTTTGATTTGTAGG 57.914 47.619 0.00 0.00 0.00 3.18
216 217 2.647299 TGGAGCCCTTTGATTTGTAGGA 59.353 45.455 0.00 0.00 0.00 2.94
217 218 3.075283 TGGAGCCCTTTGATTTGTAGGAA 59.925 43.478 0.00 0.00 0.00 3.36
218 219 4.264352 TGGAGCCCTTTGATTTGTAGGAAT 60.264 41.667 0.00 0.00 0.00 3.01
219 220 4.098501 GGAGCCCTTTGATTTGTAGGAATG 59.901 45.833 0.00 0.00 0.00 2.67
220 221 4.026052 AGCCCTTTGATTTGTAGGAATGG 58.974 43.478 0.00 0.00 0.00 3.16
221 222 4.023291 GCCCTTTGATTTGTAGGAATGGA 58.977 43.478 0.00 0.00 0.00 3.41
222 223 4.651045 GCCCTTTGATTTGTAGGAATGGAT 59.349 41.667 0.00 0.00 0.00 3.41
223 224 5.129320 GCCCTTTGATTTGTAGGAATGGATT 59.871 40.000 0.00 0.00 0.00 3.01
224 225 6.683861 GCCCTTTGATTTGTAGGAATGGATTC 60.684 42.308 0.00 0.00 36.08 2.52
256 257 9.883142 CCTATGTAGGATAGAAATCAATCCTTC 57.117 37.037 9.03 5.31 46.63 3.46
259 260 8.089625 TGTAGGATAGAAATCAATCCTTCACA 57.910 34.615 9.03 6.12 42.91 3.58
260 261 8.717717 TGTAGGATAGAAATCAATCCTTCACAT 58.282 33.333 9.03 0.00 42.91 3.21
261 262 9.566432 GTAGGATAGAAATCAATCCTTCACATT 57.434 33.333 9.03 0.00 42.91 2.71
263 264 9.484806 AGGATAGAAATCAATCCTTCACATTTT 57.515 29.630 0.00 0.00 40.39 1.82
268 269 9.933723 AGAAATCAATCCTTCACATTTTAAAGG 57.066 29.630 0.00 0.00 40.80 3.11
293 294 2.990740 AAAACATTGGCCTAGACCCA 57.009 45.000 3.32 0.00 0.00 4.51
294 295 2.514458 AAACATTGGCCTAGACCCAG 57.486 50.000 3.32 0.00 33.13 4.45
295 296 1.372501 AACATTGGCCTAGACCCAGT 58.627 50.000 3.32 0.00 33.13 4.00
296 297 0.620556 ACATTGGCCTAGACCCAGTG 59.379 55.000 17.44 17.44 43.40 3.66
297 298 0.911769 CATTGGCCTAGACCCAGTGA 59.088 55.000 15.29 0.00 41.16 3.41
298 299 1.281867 CATTGGCCTAGACCCAGTGAA 59.718 52.381 15.29 0.00 41.16 3.18
299 300 1.440618 TTGGCCTAGACCCAGTGAAA 58.559 50.000 3.32 0.00 33.13 2.69
300 301 1.440618 TGGCCTAGACCCAGTGAAAA 58.559 50.000 3.32 0.00 0.00 2.29
301 302 1.777878 TGGCCTAGACCCAGTGAAAAA 59.222 47.619 3.32 0.00 0.00 1.94
324 325 9.991906 AAAAATTCCTATCCTATGCATCAAATG 57.008 29.630 0.19 0.00 0.00 2.32
325 326 8.945195 AAATTCCTATCCTATGCATCAAATGA 57.055 30.769 0.19 0.00 0.00 2.57
326 327 7.934855 ATTCCTATCCTATGCATCAAATGAC 57.065 36.000 0.19 0.00 0.00 3.06
327 328 6.438186 TCCTATCCTATGCATCAAATGACA 57.562 37.500 0.19 0.00 0.00 3.58
328 329 7.024345 TCCTATCCTATGCATCAAATGACAT 57.976 36.000 0.19 0.00 33.67 3.06
329 330 8.149631 TCCTATCCTATGCATCAAATGACATA 57.850 34.615 0.19 0.00 32.25 2.29
330 331 8.775151 TCCTATCCTATGCATCAAATGACATAT 58.225 33.333 0.19 0.00 32.75 1.78
331 332 9.053840 CCTATCCTATGCATCAAATGACATATC 57.946 37.037 0.19 0.00 32.75 1.63
332 333 9.833917 CTATCCTATGCATCAAATGACATATCT 57.166 33.333 0.19 0.00 32.75 1.98
334 335 8.929260 TCCTATGCATCAAATGACATATCTTT 57.071 30.769 0.19 0.00 32.75 2.52
359 360 9.803315 TTATCTATAGGATTTCGTATGCATGTC 57.197 33.333 10.16 1.37 35.98 3.06
360 361 7.227049 TCTATAGGATTTCGTATGCATGTCA 57.773 36.000 10.16 0.00 0.00 3.58
361 362 7.840931 TCTATAGGATTTCGTATGCATGTCAT 58.159 34.615 10.16 7.59 39.17 3.06
362 363 6.732531 ATAGGATTTCGTATGCATGTCATG 57.267 37.500 10.16 8.56 36.63 3.07
363 364 4.454678 AGGATTTCGTATGCATGTCATGT 58.545 39.130 10.16 0.00 36.63 3.21
364 365 4.512944 AGGATTTCGTATGCATGTCATGTC 59.487 41.667 10.16 7.37 36.63 3.06
365 366 4.273235 GGATTTCGTATGCATGTCATGTCA 59.727 41.667 10.16 12.37 36.63 3.58
366 367 4.598406 TTTCGTATGCATGTCATGTCAC 57.402 40.909 10.16 8.61 36.63 3.67
367 368 3.525268 TCGTATGCATGTCATGTCACT 57.475 42.857 10.16 6.21 36.63 3.41
368 369 3.860641 TCGTATGCATGTCATGTCACTT 58.139 40.909 10.16 2.60 36.63 3.16
369 370 3.865164 TCGTATGCATGTCATGTCACTTC 59.135 43.478 10.16 6.45 36.63 3.01
370 371 3.001634 CGTATGCATGTCATGTCACTTCC 59.998 47.826 10.16 0.00 36.63 3.46
371 372 2.865119 TGCATGTCATGTCACTTCCT 57.135 45.000 14.26 0.00 0.00 3.36
372 373 3.979101 TGCATGTCATGTCACTTCCTA 57.021 42.857 14.26 0.00 0.00 2.94
373 374 4.492494 TGCATGTCATGTCACTTCCTAT 57.508 40.909 14.26 0.00 0.00 2.57
374 375 4.193865 TGCATGTCATGTCACTTCCTATG 58.806 43.478 14.26 0.00 0.00 2.23
375 376 4.080975 TGCATGTCATGTCACTTCCTATGA 60.081 41.667 14.26 0.00 0.00 2.15
376 377 5.061853 GCATGTCATGTCACTTCCTATGAT 58.938 41.667 14.26 0.00 32.76 2.45
377 378 5.530171 GCATGTCATGTCACTTCCTATGATT 59.470 40.000 14.26 0.00 32.76 2.57
378 379 6.039047 GCATGTCATGTCACTTCCTATGATTT 59.961 38.462 14.26 0.00 32.76 2.17
379 380 7.415989 GCATGTCATGTCACTTCCTATGATTTT 60.416 37.037 14.26 0.00 32.76 1.82
380 381 7.615582 TGTCATGTCACTTCCTATGATTTTC 57.384 36.000 0.00 0.00 32.76 2.29
381 382 6.599244 TGTCATGTCACTTCCTATGATTTTCC 59.401 38.462 0.00 0.00 32.76 3.13
382 383 6.038714 GTCATGTCACTTCCTATGATTTTCCC 59.961 42.308 0.00 0.00 32.76 3.97
383 384 5.512942 TGTCACTTCCTATGATTTTCCCA 57.487 39.130 0.00 0.00 0.00 4.37
384 385 6.078456 TGTCACTTCCTATGATTTTCCCAT 57.922 37.500 0.00 0.00 0.00 4.00
385 386 6.493166 TGTCACTTCCTATGATTTTCCCATT 58.507 36.000 0.00 0.00 0.00 3.16
386 387 6.603201 TGTCACTTCCTATGATTTTCCCATTC 59.397 38.462 0.00 0.00 0.00 2.67
387 388 6.039829 GTCACTTCCTATGATTTTCCCATTCC 59.960 42.308 0.00 0.00 0.00 3.01
388 389 6.068853 TCACTTCCTATGATTTTCCCATTCCT 60.069 38.462 0.00 0.00 0.00 3.36
389 390 7.128728 TCACTTCCTATGATTTTCCCATTCCTA 59.871 37.037 0.00 0.00 0.00 2.94
390 391 7.946776 CACTTCCTATGATTTTCCCATTCCTAT 59.053 37.037 0.00 0.00 0.00 2.57
391 392 9.182642 ACTTCCTATGATTTTCCCATTCCTATA 57.817 33.333 0.00 0.00 0.00 1.31
392 393 9.454859 CTTCCTATGATTTTCCCATTCCTATAC 57.545 37.037 0.00 0.00 0.00 1.47
393 394 8.757307 TCCTATGATTTTCCCATTCCTATACT 57.243 34.615 0.00 0.00 0.00 2.12
394 395 9.852784 TCCTATGATTTTCCCATTCCTATACTA 57.147 33.333 0.00 0.00 0.00 1.82
417 418 9.225682 ACTATTTCTATCCTATGAACCAAAGGA 57.774 33.333 0.00 0.00 43.38 3.36
418 419 9.717942 CTATTTCTATCCTATGAACCAAAGGAG 57.282 37.037 0.00 0.00 42.53 3.69
419 420 6.500589 TTCTATCCTATGAACCAAAGGAGG 57.499 41.667 0.00 0.00 42.53 4.30
420 421 3.584733 ATCCTATGAACCAAAGGAGGC 57.415 47.619 0.00 0.00 42.53 4.70
421 422 1.564348 TCCTATGAACCAAAGGAGGCC 59.436 52.381 0.00 0.00 34.46 5.19
422 423 1.566231 CCTATGAACCAAAGGAGGCCT 59.434 52.381 3.86 3.86 33.87 5.19
424 425 3.202151 CCTATGAACCAAAGGAGGCCTTA 59.798 47.826 6.77 0.00 43.92 2.69
425 426 3.825908 ATGAACCAAAGGAGGCCTTAA 57.174 42.857 6.77 0.00 43.92 1.85
426 427 3.825908 TGAACCAAAGGAGGCCTTAAT 57.174 42.857 6.77 0.00 43.92 1.40
427 428 4.126520 TGAACCAAAGGAGGCCTTAATT 57.873 40.909 6.77 0.00 43.92 1.40
428 429 5.263872 TGAACCAAAGGAGGCCTTAATTA 57.736 39.130 6.77 0.00 43.92 1.40
429 430 5.646215 TGAACCAAAGGAGGCCTTAATTAA 58.354 37.500 6.77 0.00 43.92 1.40
430 431 6.260663 TGAACCAAAGGAGGCCTTAATTAAT 58.739 36.000 6.77 0.00 43.92 1.40
431 432 6.154363 TGAACCAAAGGAGGCCTTAATTAATG 59.846 38.462 6.77 0.04 43.92 1.90
432 433 5.837829 ACCAAAGGAGGCCTTAATTAATGA 58.162 37.500 6.77 0.00 43.92 2.57
433 434 6.260663 ACCAAAGGAGGCCTTAATTAATGAA 58.739 36.000 6.77 0.00 43.92 2.57
434 435 6.381133 ACCAAAGGAGGCCTTAATTAATGAAG 59.619 38.462 6.77 5.64 43.92 3.02
435 436 6.381133 CCAAAGGAGGCCTTAATTAATGAAGT 59.619 38.462 6.77 0.00 43.92 3.01
436 437 7.260603 CAAAGGAGGCCTTAATTAATGAAGTG 58.739 38.462 6.77 4.74 43.92 3.16
437 438 6.079712 AGGAGGCCTTAATTAATGAAGTGT 57.920 37.500 6.77 0.00 0.00 3.55
438 439 6.494059 AGGAGGCCTTAATTAATGAAGTGTT 58.506 36.000 6.77 0.00 0.00 3.32
439 440 6.378280 AGGAGGCCTTAATTAATGAAGTGTTG 59.622 38.462 6.77 0.00 0.00 3.33
440 441 6.152831 GGAGGCCTTAATTAATGAAGTGTTGT 59.847 38.462 6.77 0.00 0.00 3.32
441 442 7.338449 GGAGGCCTTAATTAATGAAGTGTTGTA 59.662 37.037 6.77 0.00 0.00 2.41
442 443 8.823220 AGGCCTTAATTAATGAAGTGTTGTAT 57.177 30.769 0.00 0.00 0.00 2.29
443 444 9.255029 AGGCCTTAATTAATGAAGTGTTGTATT 57.745 29.630 0.00 0.00 0.00 1.89
454 455 9.573133 AATGAAGTGTTGTATTAATGCTTTAGC 57.427 29.630 5.11 0.00 42.50 3.09
455 456 8.335532 TGAAGTGTTGTATTAATGCTTTAGCT 57.664 30.769 5.11 0.00 42.66 3.32
456 457 8.792633 TGAAGTGTTGTATTAATGCTTTAGCTT 58.207 29.630 5.11 3.67 42.66 3.74
467 468 5.851047 ATGCTTTAGCTTGAATTTTGTGC 57.149 34.783 0.00 0.00 42.66 4.57
478 479 2.175878 ATTTTGTGCGAGCTCAGTCT 57.824 45.000 15.40 0.00 0.00 3.24
485 486 1.230635 GCGAGCTCAGTCTTGCCAAA 61.231 55.000 15.40 0.00 37.48 3.28
486 487 1.446907 CGAGCTCAGTCTTGCCAAAT 58.553 50.000 15.40 0.00 0.00 2.32
488 489 2.157738 GAGCTCAGTCTTGCCAAATGT 58.842 47.619 9.40 0.00 0.00 2.71
489 490 2.157738 AGCTCAGTCTTGCCAAATGTC 58.842 47.619 0.00 0.00 0.00 3.06
490 491 1.881973 GCTCAGTCTTGCCAAATGTCA 59.118 47.619 0.00 0.00 0.00 3.58
491 492 2.294233 GCTCAGTCTTGCCAAATGTCAA 59.706 45.455 0.00 0.00 0.00 3.18
492 493 3.057033 GCTCAGTCTTGCCAAATGTCAAT 60.057 43.478 0.00 0.00 0.00 2.57
493 494 4.560108 GCTCAGTCTTGCCAAATGTCAATT 60.560 41.667 0.00 0.00 0.00 2.32
494 495 5.125100 TCAGTCTTGCCAAATGTCAATTC 57.875 39.130 0.00 0.00 0.00 2.17
498 499 5.479375 AGTCTTGCCAAATGTCAATTCATCT 59.521 36.000 0.00 0.00 0.00 2.90
511 512 8.124808 TGTCAATTCATCTCAATTTTGGATGA 57.875 30.769 14.87 14.87 40.15 2.92
533 534 6.991938 TGATCCAATCCTCGTTTGAAATTTT 58.008 32.000 0.00 0.00 0.00 1.82
561 562 0.696501 ACCAAGAACGTTGGGGCTAT 59.303 50.000 5.00 0.00 43.71 2.97
564 565 2.355310 CCAAGAACGTTGGGGCTATACA 60.355 50.000 5.00 0.00 35.96 2.29
688 689 8.763049 TCACTCGATCAAATAATATCCATCAC 57.237 34.615 0.00 0.00 0.00 3.06
730 731 1.278127 AGAACCTGGATAACACCACCG 59.722 52.381 0.00 0.00 35.91 4.94
896 900 1.569479 GCAATCGCCTTATCCTCCGC 61.569 60.000 0.00 0.00 0.00 5.54
1236 1251 5.349817 CCTTGCACACAACTAGAACAGATAG 59.650 44.000 0.00 0.00 0.00 2.08
1242 1257 4.979197 CACAACTAGAACAGATAGATCGGC 59.021 45.833 0.00 0.00 0.00 5.54
1253 1268 1.029681 TAGATCGGCGTGCATGTAGT 58.970 50.000 6.85 0.00 0.00 2.73
1280 1301 3.120792 CGTCCTAACATACGGTGATTGG 58.879 50.000 0.00 0.00 35.51 3.16
1282 1303 2.158871 TCCTAACATACGGTGATTGGGC 60.159 50.000 0.00 0.00 0.00 5.36
1301 1322 3.311110 AGGCTTCCGGCGAGAACA 61.311 61.111 9.30 0.00 42.94 3.18
1309 1330 2.649034 GGCGAGAACACCGTGAGA 59.351 61.111 5.28 0.00 0.00 3.27
1490 1520 1.207089 TGTAATTGGGAGGAGCAGACG 59.793 52.381 0.00 0.00 0.00 4.18
1516 1546 4.400845 CAGCAGTTCTGAAATGATGAACG 58.599 43.478 26.17 3.82 45.72 3.95
1528 1558 3.291101 ATGAACGTGGTCGGGTCGG 62.291 63.158 0.00 0.00 41.85 4.79
1747 1796 4.434713 ACATGTACGGCAAAAGGAAATC 57.565 40.909 0.00 0.00 0.00 2.17
1759 1808 0.478072 AGGAAATCCACAGTGCCACA 59.522 50.000 0.00 0.00 38.89 4.17
1959 2009 6.341316 GTCGCCAACATCATCAGGTATATAT 58.659 40.000 0.00 0.00 0.00 0.86
1960 2010 6.256539 GTCGCCAACATCATCAGGTATATATG 59.743 42.308 0.00 0.00 0.00 1.78
1961 2011 6.070824 TCGCCAACATCATCAGGTATATATGT 60.071 38.462 0.00 0.00 0.00 2.29
1962 2012 7.123547 TCGCCAACATCATCAGGTATATATGTA 59.876 37.037 0.00 0.00 0.00 2.29
1964 2014 7.225538 GCCAACATCATCAGGTATATATGTAGC 59.774 40.741 0.75 0.75 0.00 3.58
1965 2015 8.481314 CCAACATCATCAGGTATATATGTAGCT 58.519 37.037 5.46 5.46 32.94 3.32
1968 2018 8.855110 ACATCATCAGGTATATATGTAGCTAGC 58.145 37.037 6.62 6.62 31.62 3.42
1969 2019 7.497925 TCATCAGGTATATATGTAGCTAGCG 57.502 40.000 9.55 3.39 31.62 4.26
1970 2020 5.752892 TCAGGTATATATGTAGCTAGCGC 57.247 43.478 9.55 0.00 31.62 5.92
1971 2021 4.272748 TCAGGTATATATGTAGCTAGCGCG 59.727 45.833 9.55 0.00 42.32 6.86
1972 2022 3.003482 AGGTATATATGTAGCTAGCGCGC 59.997 47.826 26.66 26.66 42.32 6.86
1976 2026 0.596082 TATGTAGCTAGCGCGCATCA 59.404 50.000 35.10 20.75 42.32 3.07
1977 2027 0.665670 ATGTAGCTAGCGCGCATCAG 60.666 55.000 35.10 26.00 42.32 2.90
1978 2028 2.355126 TAGCTAGCGCGCATCAGC 60.355 61.111 35.10 33.31 42.32 4.26
2029 2082 4.482990 ACCTGGACCAAATTGATCAACTT 58.517 39.130 11.07 2.62 0.00 2.66
2039 2092 6.762661 CCAAATTGATCAACTTTGTTCCTTGT 59.237 34.615 25.13 4.03 0.00 3.16
2130 2183 1.134907 ACCTACGTAGATGTTTGCCCG 60.135 52.381 24.15 5.46 0.00 6.13
2131 2184 0.928229 CTACGTAGATGTTTGCCCGC 59.072 55.000 17.95 0.00 0.00 6.13
2888 2958 1.521423 CAAGGTGTTCGACGAGTGAAC 59.479 52.381 0.00 10.67 44.64 3.18
2889 2959 0.031721 AGGTGTTCGACGAGTGAACC 59.968 55.000 13.59 5.06 43.95 3.62
2907 2977 2.185608 GAGAGCTCGGAGGTTGCC 59.814 66.667 11.50 0.00 0.00 4.52
2969 3039 7.727181 ACGAAGCAACTACATTATTATCCTCT 58.273 34.615 0.00 0.00 0.00 3.69
2970 3040 8.857098 ACGAAGCAACTACATTATTATCCTCTA 58.143 33.333 0.00 0.00 0.00 2.43
3077 3147 0.467384 ATCAGACAGGATTCGGGCAG 59.533 55.000 0.00 0.00 0.00 4.85
3096 3166 5.891551 GGGCAGAATAAATTGACCCTTCTTA 59.108 40.000 0.00 0.00 36.43 2.10
3112 3182 5.347342 CCTTCTTATGTGAGCTGTACTGAG 58.653 45.833 3.61 0.00 0.00 3.35
3156 3231 4.339530 ACTTTCTCTTGGGACTTTCAAAGC 59.660 41.667 0.00 0.00 0.00 3.51
3169 3244 1.010580 TCAAAGCGTTCTTGTGCGAA 58.989 45.000 0.00 0.00 35.87 4.70
3198 3273 5.704978 TGTCTAACATGTGCTTTAAGATGCA 59.295 36.000 0.00 0.00 36.79 3.96
3251 3331 2.408271 TGCTTACTCCTGATGGCAAG 57.592 50.000 0.00 0.00 0.00 4.01
3265 3345 5.916318 TGATGGCAAGTTTTCTGTCAAATT 58.084 33.333 0.00 0.00 0.00 1.82
3269 3351 7.106439 TGGCAAGTTTTCTGTCAAATTTCTA 57.894 32.000 0.00 0.00 0.00 2.10
3283 3365 7.925483 TGTCAAATTTCTATCAAAAACTGGTGG 59.075 33.333 0.00 0.00 0.00 4.61
3290 3372 4.605640 ATCAAAAACTGGTGGTGAATGG 57.394 40.909 0.00 0.00 0.00 3.16
3292 3374 3.772025 TCAAAAACTGGTGGTGAATGGTT 59.228 39.130 0.00 0.00 0.00 3.67
3299 3381 7.875327 AACTGGTGGTGAATGGTTTATATAC 57.125 36.000 0.00 0.00 0.00 1.47
3300 3382 6.964464 ACTGGTGGTGAATGGTTTATATACA 58.036 36.000 0.00 0.00 0.00 2.29
3301 3383 7.582719 ACTGGTGGTGAATGGTTTATATACAT 58.417 34.615 0.00 0.00 0.00 2.29
3303 3385 8.911918 TGGTGGTGAATGGTTTATATACATAC 57.088 34.615 0.00 0.00 0.00 2.39
3304 3386 8.719596 TGGTGGTGAATGGTTTATATACATACT 58.280 33.333 0.00 0.00 0.00 2.12
3305 3387 8.999431 GGTGGTGAATGGTTTATATACATACTG 58.001 37.037 0.00 0.00 0.00 2.74
3306 3388 9.772973 GTGGTGAATGGTTTATATACATACTGA 57.227 33.333 0.00 0.00 0.00 3.41
3424 3509 6.414732 TGGAAACTGGACGAGATAATTTCAT 58.585 36.000 0.00 0.00 0.00 2.57
3431 3516 8.204160 ACTGGACGAGATAATTTCATATCACAA 58.796 33.333 0.00 0.00 35.22 3.33
3698 3783 5.296780 GCGGATTTGTGGAGATGAAAATCTA 59.703 40.000 6.86 0.00 38.50 1.98
3738 3825 7.950124 GGGGGATTTTAATATCATCAGGAGAAA 59.050 37.037 7.99 0.00 0.00 2.52
3758 3845 7.596621 GGAGAAAAGATGAAAAGAACAATGACC 59.403 37.037 0.00 0.00 0.00 4.02
3800 3887 8.849168 GGTCCATGATGTTTAACATGATTATCA 58.151 33.333 15.83 7.26 44.28 2.15
3856 3945 5.310451 GGTAGACAGTTTACATGGTCCAAA 58.690 41.667 0.00 0.00 0.00 3.28
3990 4079 5.741011 TCACACACCACTTCTTTTAGACTT 58.259 37.500 0.00 0.00 0.00 3.01
4040 4129 3.634568 ATATCTTCTCCTTCGAGCACG 57.365 47.619 0.00 0.00 35.94 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.983879 AAACATGCTCGGGAGGGGG 61.984 63.158 0.00 0.00 0.00 5.40
1 2 1.750399 CAAACATGCTCGGGAGGGG 60.750 63.158 0.00 0.00 0.00 4.79
3 4 0.804989 GAACAAACATGCTCGGGAGG 59.195 55.000 0.00 0.00 0.00 4.30
4 5 1.813513 AGAACAAACATGCTCGGGAG 58.186 50.000 0.00 0.00 0.00 4.30
6 7 1.200020 GGAAGAACAAACATGCTCGGG 59.800 52.381 0.00 0.00 0.00 5.14
7 8 2.154462 AGGAAGAACAAACATGCTCGG 58.846 47.619 0.00 0.00 0.00 4.63
8 9 4.452455 ACTTAGGAAGAACAAACATGCTCG 59.548 41.667 0.00 0.00 0.00 5.03
9 10 5.948992 ACTTAGGAAGAACAAACATGCTC 57.051 39.130 0.00 0.00 0.00 4.26
10 11 5.241728 GGAACTTAGGAAGAACAAACATGCT 59.758 40.000 0.00 0.00 0.00 3.79
11 12 5.009610 TGGAACTTAGGAAGAACAAACATGC 59.990 40.000 0.00 0.00 0.00 4.06
12 13 6.633500 TGGAACTTAGGAAGAACAAACATG 57.367 37.500 0.00 0.00 0.00 3.21
13 14 6.294731 GCATGGAACTTAGGAAGAACAAACAT 60.295 38.462 0.00 0.00 0.00 2.71
14 15 5.009610 GCATGGAACTTAGGAAGAACAAACA 59.990 40.000 0.00 0.00 0.00 2.83
15 16 5.241728 AGCATGGAACTTAGGAAGAACAAAC 59.758 40.000 0.00 0.00 0.00 2.93
16 17 5.385198 AGCATGGAACTTAGGAAGAACAAA 58.615 37.500 0.00 0.00 0.00 2.83
17 18 4.985538 AGCATGGAACTTAGGAAGAACAA 58.014 39.130 0.00 0.00 0.00 2.83
18 19 4.287067 AGAGCATGGAACTTAGGAAGAACA 59.713 41.667 0.00 0.00 0.00 3.18
19 20 4.837972 AGAGCATGGAACTTAGGAAGAAC 58.162 43.478 0.00 0.00 0.00 3.01
20 21 4.780021 AGAGAGCATGGAACTTAGGAAGAA 59.220 41.667 0.00 0.00 0.00 2.52
21 22 4.357325 AGAGAGCATGGAACTTAGGAAGA 58.643 43.478 0.00 0.00 0.00 2.87
22 23 4.692228 GAGAGAGCATGGAACTTAGGAAG 58.308 47.826 0.00 0.00 0.00 3.46
23 24 3.131223 CGAGAGAGCATGGAACTTAGGAA 59.869 47.826 0.00 0.00 0.00 3.36
24 25 2.690497 CGAGAGAGCATGGAACTTAGGA 59.310 50.000 0.00 0.00 0.00 2.94
25 26 2.801342 GCGAGAGAGCATGGAACTTAGG 60.801 54.545 0.00 0.00 37.05 2.69
26 27 2.100584 AGCGAGAGAGCATGGAACTTAG 59.899 50.000 0.00 0.00 40.15 2.18
27 28 2.103373 AGCGAGAGAGCATGGAACTTA 58.897 47.619 0.00 0.00 40.15 2.24
28 29 0.901124 AGCGAGAGAGCATGGAACTT 59.099 50.000 0.00 0.00 40.15 2.66
29 30 0.175302 CAGCGAGAGAGCATGGAACT 59.825 55.000 0.00 0.00 40.15 3.01
30 31 0.108424 ACAGCGAGAGAGCATGGAAC 60.108 55.000 0.00 0.00 40.15 3.62
31 32 0.610174 AACAGCGAGAGAGCATGGAA 59.390 50.000 0.00 0.00 40.15 3.53
32 33 0.108472 CAACAGCGAGAGAGCATGGA 60.108 55.000 0.00 0.00 40.15 3.41
33 34 0.390866 ACAACAGCGAGAGAGCATGG 60.391 55.000 0.00 0.00 40.15 3.66
34 35 1.923204 GTACAACAGCGAGAGAGCATG 59.077 52.381 0.00 0.00 40.15 4.06
35 36 1.546029 TGTACAACAGCGAGAGAGCAT 59.454 47.619 0.00 0.00 40.15 3.79
36 37 0.958822 TGTACAACAGCGAGAGAGCA 59.041 50.000 0.00 0.00 40.15 4.26
37 38 1.341606 GTGTACAACAGCGAGAGAGC 58.658 55.000 0.00 0.00 37.41 4.09
38 39 1.983972 GGTGTACAACAGCGAGAGAG 58.016 55.000 5.89 0.00 36.84 3.20
45 46 1.852067 CGGCCAAGGTGTACAACAGC 61.852 60.000 14.58 12.52 46.20 4.40
46 47 0.250124 TCGGCCAAGGTGTACAACAG 60.250 55.000 14.58 4.99 0.00 3.16
47 48 0.533308 GTCGGCCAAGGTGTACAACA 60.533 55.000 14.58 0.00 0.00 3.33
48 49 1.562575 CGTCGGCCAAGGTGTACAAC 61.563 60.000 1.50 1.50 0.00 3.32
49 50 1.301087 CGTCGGCCAAGGTGTACAA 60.301 57.895 2.24 0.00 0.00 2.41
50 51 2.340809 CGTCGGCCAAGGTGTACA 59.659 61.111 2.24 0.00 0.00 2.90
51 52 3.116531 GCGTCGGCCAAGGTGTAC 61.117 66.667 2.24 0.00 0.00 2.90
52 53 4.728102 CGCGTCGGCCAAGGTGTA 62.728 66.667 2.24 0.00 35.02 2.90
62 63 4.992511 TTTTGGGGGTCGCGTCGG 62.993 66.667 5.77 0.00 0.00 4.79
63 64 3.419759 CTTTTGGGGGTCGCGTCG 61.420 66.667 5.77 0.00 0.00 5.12
64 65 2.031465 TCTTTTGGGGGTCGCGTC 59.969 61.111 5.77 0.00 0.00 5.19
65 66 2.032071 CTCTTTTGGGGGTCGCGT 59.968 61.111 5.77 0.00 0.00 6.01
66 67 1.170290 AAACTCTTTTGGGGGTCGCG 61.170 55.000 0.00 0.00 0.00 5.87
67 68 1.037493 AAAACTCTTTTGGGGGTCGC 58.963 50.000 0.00 0.00 0.00 5.19
68 69 2.793278 CAAAACTCTTTTGGGGGTCG 57.207 50.000 0.30 0.00 44.75 4.79
77 78 9.337396 ACAAAAGAAAAGAAACCAAAACTCTTT 57.663 25.926 0.00 0.00 40.31 2.52
78 79 8.902540 ACAAAAGAAAAGAAACCAAAACTCTT 57.097 26.923 0.00 0.00 0.00 2.85
79 80 7.602644 GGACAAAAGAAAAGAAACCAAAACTCT 59.397 33.333 0.00 0.00 0.00 3.24
80 81 7.602644 AGGACAAAAGAAAAGAAACCAAAACTC 59.397 33.333 0.00 0.00 0.00 3.01
81 82 7.450074 AGGACAAAAGAAAAGAAACCAAAACT 58.550 30.769 0.00 0.00 0.00 2.66
82 83 7.667043 AGGACAAAAGAAAAGAAACCAAAAC 57.333 32.000 0.00 0.00 0.00 2.43
83 84 8.590204 AGTAGGACAAAAGAAAAGAAACCAAAA 58.410 29.630 0.00 0.00 0.00 2.44
84 85 8.129496 AGTAGGACAAAAGAAAAGAAACCAAA 57.871 30.769 0.00 0.00 0.00 3.28
85 86 7.712204 AGTAGGACAAAAGAAAAGAAACCAA 57.288 32.000 0.00 0.00 0.00 3.67
86 87 7.363443 CCAAGTAGGACAAAAGAAAAGAAACCA 60.363 37.037 0.00 0.00 41.22 3.67
87 88 6.978659 CCAAGTAGGACAAAAGAAAAGAAACC 59.021 38.462 0.00 0.00 41.22 3.27
88 89 7.768240 TCCAAGTAGGACAAAAGAAAAGAAAC 58.232 34.615 0.00 0.00 43.07 2.78
89 90 7.948034 TCCAAGTAGGACAAAAGAAAAGAAA 57.052 32.000 0.00 0.00 43.07 2.52
104 105 6.405842 GGCCTTAAAATTGTGATCCAAGTAGG 60.406 42.308 0.00 0.00 36.25 3.18
105 106 6.378280 AGGCCTTAAAATTGTGATCCAAGTAG 59.622 38.462 0.00 0.00 36.25 2.57
106 107 6.252995 AGGCCTTAAAATTGTGATCCAAGTA 58.747 36.000 0.00 0.00 36.25 2.24
107 108 5.086621 AGGCCTTAAAATTGTGATCCAAGT 58.913 37.500 0.00 0.00 36.25 3.16
108 109 5.394553 GGAGGCCTTAAAATTGTGATCCAAG 60.395 44.000 6.77 0.00 36.25 3.61
109 110 4.466015 GGAGGCCTTAAAATTGTGATCCAA 59.534 41.667 6.77 0.00 37.49 3.53
110 111 4.023291 GGAGGCCTTAAAATTGTGATCCA 58.977 43.478 6.77 0.00 0.00 3.41
111 112 4.281657 AGGAGGCCTTAAAATTGTGATCC 58.718 43.478 6.77 0.00 0.00 3.36
112 113 5.921962 AAGGAGGCCTTAAAATTGTGATC 57.078 39.130 6.77 0.00 42.74 2.92
113 114 5.046376 CCAAAGGAGGCCTTAAAATTGTGAT 60.046 40.000 6.77 0.00 43.92 3.06
114 115 4.283212 CCAAAGGAGGCCTTAAAATTGTGA 59.717 41.667 6.77 0.00 43.92 3.58
115 116 4.040339 ACCAAAGGAGGCCTTAAAATTGTG 59.960 41.667 6.77 5.84 43.92 3.33
116 117 4.231273 ACCAAAGGAGGCCTTAAAATTGT 58.769 39.130 6.77 0.00 43.92 2.71
117 118 4.890158 ACCAAAGGAGGCCTTAAAATTG 57.110 40.909 6.77 8.61 43.92 2.32
118 119 4.904853 TGAACCAAAGGAGGCCTTAAAATT 59.095 37.500 6.77 0.00 43.92 1.82
119 120 4.488770 TGAACCAAAGGAGGCCTTAAAAT 58.511 39.130 6.77 0.00 43.92 1.82
120 121 3.917300 TGAACCAAAGGAGGCCTTAAAA 58.083 40.909 6.77 0.00 43.92 1.52
121 122 3.603965 TGAACCAAAGGAGGCCTTAAA 57.396 42.857 6.77 0.00 43.92 1.52
122 123 3.825908 ATGAACCAAAGGAGGCCTTAA 57.174 42.857 6.77 0.00 43.92 1.85
123 124 3.202151 CCTATGAACCAAAGGAGGCCTTA 59.798 47.826 6.77 0.00 43.92 2.69
124 125 7.069925 ATTCCTATGAACCAAAGGAGGCCTT 62.070 44.000 6.77 0.00 40.43 4.35
125 126 1.566231 CCTATGAACCAAAGGAGGCCT 59.434 52.381 3.86 3.86 33.87 5.19
126 127 1.564348 TCCTATGAACCAAAGGAGGCC 59.436 52.381 0.00 0.00 34.46 5.19
127 128 3.366052 TTCCTATGAACCAAAGGAGGC 57.634 47.619 0.00 0.00 40.43 4.70
128 129 7.062957 ACAATATTCCTATGAACCAAAGGAGG 58.937 38.462 0.00 0.00 40.43 4.30
129 130 9.277783 CTACAATATTCCTATGAACCAAAGGAG 57.722 37.037 0.00 0.00 40.43 3.69
130 131 8.217799 CCTACAATATTCCTATGAACCAAAGGA 58.782 37.037 0.00 0.00 37.64 3.36
131 132 8.217799 TCCTACAATATTCCTATGAACCAAAGG 58.782 37.037 0.00 0.00 32.13 3.11
132 133 9.627123 TTCCTACAATATTCCTATGAACCAAAG 57.373 33.333 0.00 0.00 32.13 2.77
135 136 9.573166 CAATTCCTACAATATTCCTATGAACCA 57.427 33.333 0.00 0.00 32.13 3.67
136 137 8.515414 GCAATTCCTACAATATTCCTATGAACC 58.485 37.037 0.00 0.00 32.13 3.62
137 138 9.066892 TGCAATTCCTACAATATTCCTATGAAC 57.933 33.333 0.00 0.00 32.13 3.18
138 139 9.639563 TTGCAATTCCTACAATATTCCTATGAA 57.360 29.630 0.00 0.00 34.33 2.57
139 140 9.639563 TTTGCAATTCCTACAATATTCCTATGA 57.360 29.630 0.00 0.00 0.00 2.15
140 141 9.903682 CTTTGCAATTCCTACAATATTCCTATG 57.096 33.333 0.00 0.00 0.00 2.23
141 142 9.082313 CCTTTGCAATTCCTACAATATTCCTAT 57.918 33.333 0.00 0.00 0.00 2.57
142 143 8.278639 TCCTTTGCAATTCCTACAATATTCCTA 58.721 33.333 0.00 0.00 0.00 2.94
143 144 7.125391 TCCTTTGCAATTCCTACAATATTCCT 58.875 34.615 0.00 0.00 0.00 3.36
144 145 7.346751 TCCTTTGCAATTCCTACAATATTCC 57.653 36.000 0.00 0.00 0.00 3.01
146 147 9.866655 TCTATCCTTTGCAATTCCTACAATATT 57.133 29.630 0.00 0.00 0.00 1.28
147 148 9.866655 TTCTATCCTTTGCAATTCCTACAATAT 57.133 29.630 0.00 0.00 0.00 1.28
148 149 9.693739 TTTCTATCCTTTGCAATTCCTACAATA 57.306 29.630 0.00 0.00 0.00 1.90
149 150 8.470002 GTTTCTATCCTTTGCAATTCCTACAAT 58.530 33.333 0.00 0.00 0.00 2.71
150 151 7.669722 AGTTTCTATCCTTTGCAATTCCTACAA 59.330 33.333 0.00 0.00 0.00 2.41
151 152 7.175104 AGTTTCTATCCTTTGCAATTCCTACA 58.825 34.615 0.00 0.00 0.00 2.74
152 153 7.631717 AGTTTCTATCCTTTGCAATTCCTAC 57.368 36.000 0.00 0.00 0.00 3.18
153 154 8.650143 AAAGTTTCTATCCTTTGCAATTCCTA 57.350 30.769 0.00 0.00 30.03 2.94
154 155 7.544804 AAAGTTTCTATCCTTTGCAATTCCT 57.455 32.000 0.00 0.00 30.03 3.36
158 159 9.920946 TCCTATAAAGTTTCTATCCTTTGCAAT 57.079 29.630 0.00 0.00 33.24 3.56
159 160 9.747898 TTCCTATAAAGTTTCTATCCTTTGCAA 57.252 29.630 0.00 0.00 33.24 4.08
160 161 9.747898 TTTCCTATAAAGTTTCTATCCTTTGCA 57.252 29.630 0.00 0.00 33.24 4.08
183 184 4.623932 AAGGGCTCCAAAGGAATTTTTC 57.376 40.909 0.00 0.00 0.00 2.29
184 185 4.411869 TCAAAGGGCTCCAAAGGAATTTTT 59.588 37.500 0.00 0.00 0.00 1.94
185 186 3.973305 TCAAAGGGCTCCAAAGGAATTTT 59.027 39.130 0.00 0.00 0.00 1.82
186 187 3.586429 TCAAAGGGCTCCAAAGGAATTT 58.414 40.909 0.00 0.00 0.00 1.82
187 188 3.258722 TCAAAGGGCTCCAAAGGAATT 57.741 42.857 0.00 0.00 0.00 2.17
188 189 2.999185 TCAAAGGGCTCCAAAGGAAT 57.001 45.000 0.00 0.00 0.00 3.01
189 190 2.999185 ATCAAAGGGCTCCAAAGGAA 57.001 45.000 0.00 0.00 0.00 3.36
190 191 2.899256 CAAATCAAAGGGCTCCAAAGGA 59.101 45.455 0.00 0.00 0.00 3.36
191 192 2.634453 ACAAATCAAAGGGCTCCAAAGG 59.366 45.455 0.00 0.00 0.00 3.11
192 193 4.082026 CCTACAAATCAAAGGGCTCCAAAG 60.082 45.833 0.00 0.00 0.00 2.77
193 194 3.831911 CCTACAAATCAAAGGGCTCCAAA 59.168 43.478 0.00 0.00 0.00 3.28
194 195 3.075283 TCCTACAAATCAAAGGGCTCCAA 59.925 43.478 0.00 0.00 0.00 3.53
195 196 2.647299 TCCTACAAATCAAAGGGCTCCA 59.353 45.455 0.00 0.00 0.00 3.86
196 197 3.366052 TCCTACAAATCAAAGGGCTCC 57.634 47.619 0.00 0.00 0.00 4.70
197 198 4.098501 CCATTCCTACAAATCAAAGGGCTC 59.901 45.833 0.00 0.00 0.00 4.70
198 199 4.026052 CCATTCCTACAAATCAAAGGGCT 58.974 43.478 0.00 0.00 0.00 5.19
199 200 4.023291 TCCATTCCTACAAATCAAAGGGC 58.977 43.478 0.00 0.00 0.00 5.19
200 201 6.796785 AATCCATTCCTACAAATCAAAGGG 57.203 37.500 0.00 0.00 0.00 3.95
242 243 9.933723 CCTTTAAAATGTGAAGGATTGATTTCT 57.066 29.630 0.00 0.00 41.97 2.52
243 244 9.927668 TCCTTTAAAATGTGAAGGATTGATTTC 57.072 29.630 0.00 0.00 42.90 2.17
273 274 3.165071 CTGGGTCTAGGCCAATGTTTTT 58.835 45.455 16.93 0.00 0.00 1.94
274 275 2.110011 ACTGGGTCTAGGCCAATGTTTT 59.890 45.455 16.93 0.00 0.00 2.43
275 276 1.710809 ACTGGGTCTAGGCCAATGTTT 59.289 47.619 16.93 0.00 0.00 2.83
276 277 1.004745 CACTGGGTCTAGGCCAATGTT 59.995 52.381 16.93 0.00 0.00 2.71
277 278 0.620556 CACTGGGTCTAGGCCAATGT 59.379 55.000 16.93 7.51 0.00 2.71
278 279 0.911769 TCACTGGGTCTAGGCCAATG 59.088 55.000 16.93 9.97 0.00 2.82
279 280 1.668826 TTCACTGGGTCTAGGCCAAT 58.331 50.000 16.93 0.00 0.00 3.16
280 281 1.440618 TTTCACTGGGTCTAGGCCAA 58.559 50.000 16.93 1.94 0.00 4.52
281 282 1.440618 TTTTCACTGGGTCTAGGCCA 58.559 50.000 16.93 0.18 0.00 5.36
282 283 2.579410 TTTTTCACTGGGTCTAGGCC 57.421 50.000 4.21 4.21 0.00 5.19
298 299 9.991906 CATTTGATGCATAGGATAGGAATTTTT 57.008 29.630 0.00 0.00 0.00 1.94
299 300 9.370930 TCATTTGATGCATAGGATAGGAATTTT 57.629 29.630 0.00 0.00 0.00 1.82
300 301 8.800332 GTCATTTGATGCATAGGATAGGAATTT 58.200 33.333 0.00 0.00 0.00 1.82
301 302 7.946219 TGTCATTTGATGCATAGGATAGGAATT 59.054 33.333 0.00 0.00 0.00 2.17
302 303 7.464273 TGTCATTTGATGCATAGGATAGGAAT 58.536 34.615 0.00 0.00 0.00 3.01
303 304 6.840527 TGTCATTTGATGCATAGGATAGGAA 58.159 36.000 0.00 0.00 0.00 3.36
304 305 6.438186 TGTCATTTGATGCATAGGATAGGA 57.562 37.500 0.00 0.00 0.00 2.94
305 306 8.975663 ATATGTCATTTGATGCATAGGATAGG 57.024 34.615 0.00 0.00 34.88 2.57
306 307 9.833917 AGATATGTCATTTGATGCATAGGATAG 57.166 33.333 0.00 0.00 34.88 2.08
308 309 9.529823 AAAGATATGTCATTTGATGCATAGGAT 57.470 29.630 0.00 0.00 34.88 3.24
309 310 8.929260 AAAGATATGTCATTTGATGCATAGGA 57.071 30.769 0.00 0.00 34.88 2.94
333 334 9.803315 GACATGCATACGAAATCCTATAGATAA 57.197 33.333 0.00 0.00 33.66 1.75
334 335 8.966868 TGACATGCATACGAAATCCTATAGATA 58.033 33.333 0.00 0.00 33.66 1.98
335 336 7.840931 TGACATGCATACGAAATCCTATAGAT 58.159 34.615 0.00 0.00 36.48 1.98
336 337 7.227049 TGACATGCATACGAAATCCTATAGA 57.773 36.000 0.00 0.00 0.00 1.98
337 338 7.547019 ACATGACATGCATACGAAATCCTATAG 59.453 37.037 15.49 0.00 34.82 1.31
338 339 7.386059 ACATGACATGCATACGAAATCCTATA 58.614 34.615 15.49 0.00 34.82 1.31
339 340 6.233434 ACATGACATGCATACGAAATCCTAT 58.767 36.000 15.49 0.00 34.82 2.57
340 341 5.610398 ACATGACATGCATACGAAATCCTA 58.390 37.500 15.49 0.00 34.82 2.94
341 342 4.454678 ACATGACATGCATACGAAATCCT 58.545 39.130 15.49 0.00 34.82 3.24
342 343 4.273235 TGACATGACATGCATACGAAATCC 59.727 41.667 15.49 0.00 34.82 3.01
343 344 5.007039 AGTGACATGACATGCATACGAAATC 59.993 40.000 15.49 2.99 34.82 2.17
344 345 4.877823 AGTGACATGACATGCATACGAAAT 59.122 37.500 15.49 0.00 34.82 2.17
345 346 4.252878 AGTGACATGACATGCATACGAAA 58.747 39.130 15.49 0.00 34.82 3.46
346 347 3.860641 AGTGACATGACATGCATACGAA 58.139 40.909 15.49 0.00 34.82 3.85
347 348 3.525268 AGTGACATGACATGCATACGA 57.475 42.857 15.49 0.00 34.82 3.43
348 349 3.001634 GGAAGTGACATGACATGCATACG 59.998 47.826 15.49 0.00 34.82 3.06
349 350 4.194640 AGGAAGTGACATGACATGCATAC 58.805 43.478 15.49 11.38 34.82 2.39
350 351 4.492494 AGGAAGTGACATGACATGCATA 57.508 40.909 15.49 0.00 34.82 3.14
351 352 3.361281 AGGAAGTGACATGACATGCAT 57.639 42.857 15.49 0.00 37.85 3.96
352 353 2.865119 AGGAAGTGACATGACATGCA 57.135 45.000 15.49 11.25 0.00 3.96
353 354 4.445453 TCATAGGAAGTGACATGACATGC 58.555 43.478 15.49 8.84 0.00 4.06
354 355 7.563888 AAATCATAGGAAGTGACATGACATG 57.436 36.000 14.02 14.02 30.64 3.21
355 356 7.284034 GGAAAATCATAGGAAGTGACATGACAT 59.716 37.037 0.00 0.00 30.64 3.06
356 357 6.599244 GGAAAATCATAGGAAGTGACATGACA 59.401 38.462 0.00 0.00 30.64 3.58
357 358 6.038714 GGGAAAATCATAGGAAGTGACATGAC 59.961 42.308 0.00 0.00 30.64 3.06
358 359 6.122277 GGGAAAATCATAGGAAGTGACATGA 58.878 40.000 0.00 0.00 32.32 3.07
359 360 5.887598 TGGGAAAATCATAGGAAGTGACATG 59.112 40.000 0.00 0.00 0.00 3.21
360 361 6.078456 TGGGAAAATCATAGGAAGTGACAT 57.922 37.500 0.00 0.00 0.00 3.06
361 362 5.512942 TGGGAAAATCATAGGAAGTGACA 57.487 39.130 0.00 0.00 0.00 3.58
362 363 6.039829 GGAATGGGAAAATCATAGGAAGTGAC 59.960 42.308 0.00 0.00 0.00 3.67
363 364 6.068853 AGGAATGGGAAAATCATAGGAAGTGA 60.069 38.462 0.00 0.00 0.00 3.41
364 365 6.131961 AGGAATGGGAAAATCATAGGAAGTG 58.868 40.000 0.00 0.00 0.00 3.16
365 366 6.347061 AGGAATGGGAAAATCATAGGAAGT 57.653 37.500 0.00 0.00 0.00 3.01
366 367 9.454859 GTATAGGAATGGGAAAATCATAGGAAG 57.545 37.037 0.00 0.00 0.00 3.46
367 368 9.182642 AGTATAGGAATGGGAAAATCATAGGAA 57.817 33.333 0.00 0.00 0.00 3.36
368 369 8.757307 AGTATAGGAATGGGAAAATCATAGGA 57.243 34.615 0.00 0.00 0.00 2.94
391 392 9.225682 TCCTTTGGTTCATAGGATAGAAATAGT 57.774 33.333 3.54 0.00 36.84 2.12
392 393 9.717942 CTCCTTTGGTTCATAGGATAGAAATAG 57.282 37.037 7.38 0.00 39.94 1.73
393 394 8.660435 CCTCCTTTGGTTCATAGGATAGAAATA 58.340 37.037 7.38 0.00 39.94 1.40
394 395 7.521669 CCTCCTTTGGTTCATAGGATAGAAAT 58.478 38.462 7.38 0.00 39.94 2.17
395 396 6.634955 GCCTCCTTTGGTTCATAGGATAGAAA 60.635 42.308 7.38 0.00 39.94 2.52
396 397 5.163195 GCCTCCTTTGGTTCATAGGATAGAA 60.163 44.000 7.38 0.00 39.94 2.10
397 398 4.348168 GCCTCCTTTGGTTCATAGGATAGA 59.652 45.833 7.38 0.00 39.94 1.98
398 399 4.505742 GGCCTCCTTTGGTTCATAGGATAG 60.506 50.000 0.00 4.66 39.94 2.08
399 400 3.394606 GGCCTCCTTTGGTTCATAGGATA 59.605 47.826 0.00 0.00 39.94 2.59
400 401 2.175715 GGCCTCCTTTGGTTCATAGGAT 59.824 50.000 0.00 0.00 39.94 3.24
401 402 1.564348 GGCCTCCTTTGGTTCATAGGA 59.436 52.381 0.00 6.86 38.81 2.94
402 403 1.566231 AGGCCTCCTTTGGTTCATAGG 59.434 52.381 0.00 0.00 34.61 2.57
403 404 3.372440 AAGGCCTCCTTTGGTTCATAG 57.628 47.619 5.23 0.00 41.69 2.23
404 405 4.938575 TTAAGGCCTCCTTTGGTTCATA 57.061 40.909 5.23 0.00 41.69 2.15
405 406 3.825908 TTAAGGCCTCCTTTGGTTCAT 57.174 42.857 5.23 0.00 41.69 2.57
406 407 3.825908 ATTAAGGCCTCCTTTGGTTCA 57.174 42.857 5.23 0.00 41.69 3.18
407 408 6.379988 TCATTAATTAAGGCCTCCTTTGGTTC 59.620 38.462 5.23 0.00 41.69 3.62
408 409 6.260663 TCATTAATTAAGGCCTCCTTTGGTT 58.739 36.000 5.23 0.00 41.69 3.67
409 410 5.837829 TCATTAATTAAGGCCTCCTTTGGT 58.162 37.500 5.23 0.00 41.69 3.67
410 411 6.381133 ACTTCATTAATTAAGGCCTCCTTTGG 59.619 38.462 5.23 0.00 41.69 3.28
411 412 7.093771 ACACTTCATTAATTAAGGCCTCCTTTG 60.094 37.037 5.23 0.00 41.69 2.77
412 413 6.954102 ACACTTCATTAATTAAGGCCTCCTTT 59.046 34.615 5.23 2.10 41.69 3.11
413 414 6.494059 ACACTTCATTAATTAAGGCCTCCTT 58.506 36.000 5.23 2.31 46.63 3.36
414 415 6.079712 ACACTTCATTAATTAAGGCCTCCT 57.920 37.500 5.23 0.00 33.87 3.69
415 416 6.152831 ACAACACTTCATTAATTAAGGCCTCC 59.847 38.462 5.23 0.00 0.00 4.30
416 417 7.158099 ACAACACTTCATTAATTAAGGCCTC 57.842 36.000 5.23 0.00 0.00 4.70
417 418 8.823220 ATACAACACTTCATTAATTAAGGCCT 57.177 30.769 0.00 0.00 0.00 5.19
428 429 9.573133 GCTAAAGCATTAATACAACACTTCATT 57.427 29.630 0.00 0.00 41.59 2.57
429 430 8.960591 AGCTAAAGCATTAATACAACACTTCAT 58.039 29.630 4.54 0.00 45.16 2.57
430 431 8.335532 AGCTAAAGCATTAATACAACACTTCA 57.664 30.769 4.54 0.00 45.16 3.02
431 432 9.065871 CAAGCTAAAGCATTAATACAACACTTC 57.934 33.333 4.54 0.00 45.16 3.01
432 433 8.792633 TCAAGCTAAAGCATTAATACAACACTT 58.207 29.630 4.54 0.00 45.16 3.16
433 434 8.335532 TCAAGCTAAAGCATTAATACAACACT 57.664 30.769 4.54 0.00 45.16 3.55
434 435 8.964420 TTCAAGCTAAAGCATTAATACAACAC 57.036 30.769 4.54 0.00 45.16 3.32
441 442 8.445493 GCACAAAATTCAAGCTAAAGCATTAAT 58.555 29.630 4.54 0.00 45.16 1.40
442 443 7.359097 CGCACAAAATTCAAGCTAAAGCATTAA 60.359 33.333 4.54 0.00 45.16 1.40
443 444 6.089283 CGCACAAAATTCAAGCTAAAGCATTA 59.911 34.615 4.54 0.00 45.16 1.90
444 445 5.107375 CGCACAAAATTCAAGCTAAAGCATT 60.107 36.000 4.54 0.00 45.16 3.56
445 446 4.386652 CGCACAAAATTCAAGCTAAAGCAT 59.613 37.500 4.54 0.00 45.16 3.79
446 447 3.735240 CGCACAAAATTCAAGCTAAAGCA 59.265 39.130 4.54 0.00 45.16 3.91
447 448 3.980775 TCGCACAAAATTCAAGCTAAAGC 59.019 39.130 0.00 0.00 42.49 3.51
448 449 4.089065 GCTCGCACAAAATTCAAGCTAAAG 59.911 41.667 0.00 0.00 0.00 1.85
449 450 3.980775 GCTCGCACAAAATTCAAGCTAAA 59.019 39.130 0.00 0.00 0.00 1.85
450 451 3.253188 AGCTCGCACAAAATTCAAGCTAA 59.747 39.130 0.00 0.00 36.88 3.09
451 452 2.813754 AGCTCGCACAAAATTCAAGCTA 59.186 40.909 0.00 0.00 36.88 3.32
452 453 1.610522 AGCTCGCACAAAATTCAAGCT 59.389 42.857 0.00 0.00 33.97 3.74
453 454 1.981533 GAGCTCGCACAAAATTCAAGC 59.018 47.619 0.00 0.00 0.00 4.01
454 455 3.231965 CTGAGCTCGCACAAAATTCAAG 58.768 45.455 9.64 0.00 0.00 3.02
455 456 2.618241 ACTGAGCTCGCACAAAATTCAA 59.382 40.909 9.64 0.00 0.00 2.69
456 457 2.221169 ACTGAGCTCGCACAAAATTCA 58.779 42.857 9.64 0.00 0.00 2.57
464 465 2.386660 GGCAAGACTGAGCTCGCAC 61.387 63.158 9.64 2.50 0.00 5.34
467 468 1.129998 CATTTGGCAAGACTGAGCTCG 59.870 52.381 9.64 6.63 0.00 5.03
485 486 8.755028 TCATCCAAAATTGAGATGAATTGACAT 58.245 29.630 17.43 0.00 39.57 3.06
486 487 8.124808 TCATCCAAAATTGAGATGAATTGACA 57.875 30.769 17.43 0.00 39.57 3.58
488 489 8.418662 GGATCATCCAAAATTGAGATGAATTGA 58.581 33.333 20.78 8.28 42.49 2.57
489 490 8.201464 TGGATCATCCAAAATTGAGATGAATTG 58.799 33.333 20.78 0.00 45.00 2.32
490 491 8.313944 TGGATCATCCAAAATTGAGATGAATT 57.686 30.769 20.78 12.07 45.00 2.17
491 492 7.907841 TGGATCATCCAAAATTGAGATGAAT 57.092 32.000 20.78 13.97 45.00 2.57
511 512 6.868339 GTCAAAATTTCAAACGAGGATTGGAT 59.132 34.615 0.00 0.00 0.00 3.41
522 523 8.879260 CTTGGTTTCAAGTCAAAATTTCAAAC 57.121 30.769 0.00 0.00 43.92 2.93
730 731 5.465390 GCCATTGTTTTCCTTGTACCTTTTC 59.535 40.000 0.00 0.00 0.00 2.29
784 787 4.077180 GAGTCGGGGAGGGAGGGT 62.077 72.222 0.00 0.00 0.00 4.34
788 792 1.381327 GATGTGAGTCGGGGAGGGA 60.381 63.158 0.00 0.00 0.00 4.20
949 957 1.227999 ATTTATGTGGCCGGCGATCG 61.228 55.000 22.54 11.69 38.88 3.69
1063 1071 3.730761 GCCTTGCTGTGCAGACGG 61.731 66.667 3.02 1.11 40.61 4.79
1218 1226 5.450688 GCCGATCTATCTGTTCTAGTTGTGT 60.451 44.000 0.00 0.00 0.00 3.72
1236 1251 1.721389 CATACTACATGCACGCCGATC 59.279 52.381 0.00 0.00 0.00 3.69
1242 1257 2.117137 GACGGACATACTACATGCACG 58.883 52.381 0.00 0.00 0.00 5.34
1271 1286 3.944250 AAGCCTGGCCCAATCACCG 62.944 63.158 16.57 0.00 0.00 4.94
1282 1303 4.082523 TTCTCGCCGGAAGCCTGG 62.083 66.667 5.05 0.00 41.93 4.45
1462 1483 2.501723 TCCTCCCAATTACAGAGTCAGC 59.498 50.000 0.00 0.00 0.00 4.26
1490 1520 0.529378 CATTTCAGAACTGCTGCCCC 59.471 55.000 0.00 0.00 44.52 5.80
1528 1558 2.421314 GCCTGCAACCAAACCACC 59.579 61.111 0.00 0.00 0.00 4.61
1747 1796 0.392706 TCAGTAGTGTGGCACTGTGG 59.607 55.000 19.83 3.90 45.01 4.17
1759 1808 1.945394 AGACACGACACGTTCAGTAGT 59.055 47.619 0.00 0.00 38.32 2.73
1959 2009 1.299392 CTGATGCGCGCTAGCTACA 60.299 57.895 33.29 19.49 42.32 2.74
1960 2010 2.653022 GCTGATGCGCGCTAGCTAC 61.653 63.158 32.55 17.72 42.32 3.58
1961 2011 2.355126 GCTGATGCGCGCTAGCTA 60.355 61.111 32.55 17.36 42.32 3.32
1962 2012 3.804153 ATGCTGATGCGCGCTAGCT 62.804 57.895 35.90 25.69 43.34 3.32
1964 2014 0.028505 AAAATGCTGATGCGCGCTAG 59.971 50.000 33.29 25.93 43.34 3.42
1965 2015 0.451383 AAAAATGCTGATGCGCGCTA 59.549 45.000 33.29 19.04 43.34 4.26
1966 2016 1.213537 AAAAATGCTGATGCGCGCT 59.786 47.368 33.29 17.95 43.34 5.92
1967 2017 3.771299 AAAAATGCTGATGCGCGC 58.229 50.000 27.26 27.26 43.34 6.86
1992 2042 4.649674 GGTCCAGGTATGAGTCACTGATTA 59.350 45.833 10.09 0.00 32.86 1.75
2001 2051 4.927267 TCAATTTGGTCCAGGTATGAGT 57.073 40.909 0.00 0.00 0.00 3.41
2009 2062 5.846203 ACAAAGTTGATCAATTTGGTCCAG 58.154 37.500 27.82 15.11 38.06 3.86
2029 2082 1.961793 AGCGTTGCTACAAGGAACAA 58.038 45.000 11.14 0.00 45.33 2.83
2113 2166 0.460635 GGCGGGCAAACATCTACGTA 60.461 55.000 0.00 0.00 0.00 3.57
2114 2167 1.743995 GGCGGGCAAACATCTACGT 60.744 57.895 0.00 0.00 0.00 3.57
2115 2168 1.024579 AAGGCGGGCAAACATCTACG 61.025 55.000 3.78 0.00 0.00 3.51
2116 2169 1.173913 AAAGGCGGGCAAACATCTAC 58.826 50.000 3.78 0.00 0.00 2.59
2117 2170 1.917872 AAAAGGCGGGCAAACATCTA 58.082 45.000 3.78 0.00 0.00 1.98
2118 2171 1.047801 AAAAAGGCGGGCAAACATCT 58.952 45.000 3.78 0.00 0.00 2.90
2119 2172 3.605013 AAAAAGGCGGGCAAACATC 57.395 47.368 3.78 0.00 0.00 3.06
2149 2202 0.453793 AGTCGATCAGAACTGGCTCG 59.546 55.000 15.76 15.76 37.43 5.03
2289 2346 4.742201 ACGATGTTCAGCGCCGCT 62.742 61.111 5.39 5.39 40.77 5.52
2673 2730 3.515316 ATGTAATCTCGCCGCCGGG 62.515 63.158 4.77 0.00 35.89 5.73
2677 2747 0.110509 CATGCATGTAATCTCGCCGC 60.111 55.000 18.91 0.00 0.00 6.53
2684 2754 6.497437 TGTTTACAGATGCATGCATGTAATC 58.503 36.000 36.73 31.43 36.70 1.75
3077 3147 8.131731 GCTCACATAAGAAGGGTCAATTTATTC 58.868 37.037 0.00 0.00 0.00 1.75
3112 3182 8.830201 AAAGTCTGACATCTGAATATATGAGC 57.170 34.615 10.88 0.00 0.00 4.26
3156 3231 2.776225 GACAAAACTTCGCACAAGAACG 59.224 45.455 0.00 0.00 0.00 3.95
3169 3244 8.220755 TCTTAAAGCACATGTTAGACAAAACT 57.779 30.769 0.00 0.00 0.00 2.66
3198 3273 5.994054 CACGATCTTTAGACATTGGATCCAT 59.006 40.000 17.06 0.00 31.89 3.41
3265 3345 6.015519 CCATTCACCACCAGTTTTTGATAGAA 60.016 38.462 0.00 0.00 0.00 2.10
3269 3351 3.966665 ACCATTCACCACCAGTTTTTGAT 59.033 39.130 0.00 0.00 0.00 2.57
3342 3427 7.415086 TGGGTGTAATACAATCCCACTAATTT 58.585 34.615 15.40 0.00 38.89 1.82
3361 3446 9.047947 AGTCTAAGTATTCTTCTTTATGGGTGT 57.952 33.333 0.00 0.00 35.36 4.16
3362 3447 9.892130 AAGTCTAAGTATTCTTCTTTATGGGTG 57.108 33.333 0.00 0.00 35.36 4.61
3395 3480 3.830744 TCTCGTCCAGTTTCCAAAAGA 57.169 42.857 0.00 0.00 0.00 2.52
3424 3509 8.156820 TGGAGAGAGTTTGAAGAAATTGTGATA 58.843 33.333 0.00 0.00 0.00 2.15
3431 3516 5.163152 ACCACTGGAGAGAGTTTGAAGAAAT 60.163 40.000 0.71 0.00 0.00 2.17
3738 3825 9.048446 CAAAATGGTCATTGTTCTTTTCATCTT 57.952 29.630 0.00 0.00 0.00 2.40
3816 3903 4.098196 GTCTACCGGTGAGCTCTATTTCTT 59.902 45.833 19.93 0.00 0.00 2.52
3856 3945 6.889301 TCATAAGTCGGAATAGGTAACGAT 57.111 37.500 0.00 0.00 46.39 3.73
3990 4079 1.229820 ACATGTGTAGCCTCCCCCA 60.230 57.895 0.00 0.00 0.00 4.96
4040 4129 1.301677 CCTTCTCGCTCAAACCAGCC 61.302 60.000 0.00 0.00 35.84 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.