Multiple sequence alignment - TraesCS4B01G321600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G321600 chr4B 100.000 2666 0 0 1 2666 612493530 612490865 0.000000e+00 4924.0
1 TraesCS4B01G321600 chr6B 99.226 1034 8 0 669 1702 18717357 18718390 0.000000e+00 1866.0
2 TraesCS4B01G321600 chr4A 98.841 1035 12 0 669 1703 85201048 85202082 0.000000e+00 1845.0
3 TraesCS4B01G321600 chr4A 98.830 1026 12 0 669 1694 725886818 725887843 0.000000e+00 1829.0
4 TraesCS4B01G321600 chr5B 98.454 1035 16 0 669 1703 320481296 320482330 0.000000e+00 1823.0
5 TraesCS4B01G321600 chr5B 98.538 1026 15 0 669 1694 42146448 42147473 0.000000e+00 1812.0
6 TraesCS4B01G321600 chr5B 98.268 231 4 0 1 231 142614483 142614253 3.200000e-109 405.0
7 TraesCS4B01G321600 chr5B 97.458 236 4 1 1 234 116687517 116687282 4.130000e-108 401.0
8 TraesCS4B01G321600 chr5B 96.970 231 7 0 1 231 712884737 712884507 3.220000e-104 388.0
9 TraesCS4B01G321600 chr5B 94.737 171 3 5 1928 2097 684881984 684882149 7.320000e-66 261.0
10 TraesCS4B01G321600 chr2B 98.454 1035 16 0 669 1703 232938576 232939610 0.000000e+00 1823.0
11 TraesCS4B01G321600 chr2B 92.063 63 1 4 1929 1989 152767224 152767164 4.730000e-13 86.1
12 TraesCS4B01G321600 chr1B 98.356 1034 14 2 669 1702 547981232 547982262 0.000000e+00 1812.0
13 TraesCS4B01G321600 chr1B 95.986 573 21 2 2096 2666 68246389 68246961 0.000000e+00 929.0
14 TraesCS4B01G321600 chr1B 93.924 576 24 7 2096 2666 460270610 460271179 0.000000e+00 859.0
15 TraesCS4B01G321600 chr1B 92.294 545 38 2 2098 2640 625911380 625910838 0.000000e+00 771.0
16 TraesCS4B01G321600 chr1B 96.137 233 7 1 1 231 481296860 481296628 1.940000e-101 379.0
17 TraesCS4B01G321600 chr1B 89.189 185 13 3 2414 2597 600885995 600886173 9.600000e-55 224.0
18 TraesCS4B01G321600 chr1B 82.328 232 35 4 1 230 189722949 189722722 2.090000e-46 196.0
19 TraesCS4B01G321600 chr1B 100.000 29 0 0 2395 2423 600885959 600885987 1.000000e-03 54.7
20 TraesCS4B01G321600 chr1A 98.068 1035 17 1 669 1703 176448492 176449523 0.000000e+00 1797.0
21 TraesCS4B01G321600 chr1A 91.130 575 47 3 2094 2666 57960847 57961419 0.000000e+00 776.0
22 TraesCS4B01G321600 chr1A 82.328 232 37 4 1 230 178836507 178836278 5.820000e-47 198.0
23 TraesCS4B01G321600 chr2A 97.681 1035 24 0 669 1703 486468423 486469457 0.000000e+00 1779.0
24 TraesCS4B01G321600 chr5A 92.982 570 36 3 2098 2666 271055216 271054650 0.000000e+00 828.0
25 TraesCS4B01G321600 chr5A 92.841 433 25 4 230 659 659829654 659830083 8.100000e-175 623.0
26 TraesCS4B01G321600 chr5A 92.593 216 16 0 1702 1917 659830152 659830367 7.170000e-81 311.0
27 TraesCS4B01G321600 chr5A 90.323 62 2 4 1930 1989 130146061 130146002 7.910000e-11 78.7
28 TraesCS4B01G321600 chr1D 91.638 574 43 5 2094 2666 37887432 37886863 0.000000e+00 789.0
29 TraesCS4B01G321600 chr3D 90.816 490 31 7 2178 2666 382755939 382755463 0.000000e+00 643.0
30 TraesCS4B01G321600 chr3D 87.750 400 43 5 2098 2494 360589217 360589613 1.870000e-126 462.0
31 TraesCS4B01G321600 chr4D 92.938 354 23 1 230 581 482761003 482760650 5.090000e-142 514.0
32 TraesCS4B01G321600 chr4D 88.341 223 22 2 1702 1920 482737190 482736968 5.660000e-67 265.0
33 TraesCS4B01G321600 chr3B 99.130 230 2 0 1 230 194817296 194817525 5.310000e-112 414.0
34 TraesCS4B01G321600 chr3B 88.341 223 23 3 1 222 778109864 778110084 5.660000e-67 265.0
35 TraesCS4B01G321600 chr7B 97.425 233 4 1 1 231 704045180 704045412 1.920000e-106 396.0
36 TraesCS4B01G321600 chr5D 91.608 286 23 1 2097 2381 264490995 264490710 6.920000e-106 394.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G321600 chr4B 612490865 612493530 2665 True 4924 4924 100.000 1 2666 1 chr4B.!!$R1 2665
1 TraesCS4B01G321600 chr6B 18717357 18718390 1033 False 1866 1866 99.226 669 1702 1 chr6B.!!$F1 1033
2 TraesCS4B01G321600 chr4A 85201048 85202082 1034 False 1845 1845 98.841 669 1703 1 chr4A.!!$F1 1034
3 TraesCS4B01G321600 chr4A 725886818 725887843 1025 False 1829 1829 98.830 669 1694 1 chr4A.!!$F2 1025
4 TraesCS4B01G321600 chr5B 320481296 320482330 1034 False 1823 1823 98.454 669 1703 1 chr5B.!!$F2 1034
5 TraesCS4B01G321600 chr5B 42146448 42147473 1025 False 1812 1812 98.538 669 1694 1 chr5B.!!$F1 1025
6 TraesCS4B01G321600 chr2B 232938576 232939610 1034 False 1823 1823 98.454 669 1703 1 chr2B.!!$F1 1034
7 TraesCS4B01G321600 chr1B 547981232 547982262 1030 False 1812 1812 98.356 669 1702 1 chr1B.!!$F3 1033
8 TraesCS4B01G321600 chr1B 68246389 68246961 572 False 929 929 95.986 2096 2666 1 chr1B.!!$F1 570
9 TraesCS4B01G321600 chr1B 460270610 460271179 569 False 859 859 93.924 2096 2666 1 chr1B.!!$F2 570
10 TraesCS4B01G321600 chr1B 625910838 625911380 542 True 771 771 92.294 2098 2640 1 chr1B.!!$R3 542
11 TraesCS4B01G321600 chr1A 176448492 176449523 1031 False 1797 1797 98.068 669 1703 1 chr1A.!!$F2 1034
12 TraesCS4B01G321600 chr1A 57960847 57961419 572 False 776 776 91.130 2094 2666 1 chr1A.!!$F1 572
13 TraesCS4B01G321600 chr2A 486468423 486469457 1034 False 1779 1779 97.681 669 1703 1 chr2A.!!$F1 1034
14 TraesCS4B01G321600 chr5A 271054650 271055216 566 True 828 828 92.982 2098 2666 1 chr5A.!!$R2 568
15 TraesCS4B01G321600 chr5A 659829654 659830367 713 False 467 623 92.717 230 1917 2 chr5A.!!$F1 1687
16 TraesCS4B01G321600 chr1D 37886863 37887432 569 True 789 789 91.638 2094 2666 1 chr1D.!!$R1 572


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
95 96 0.105039 GGGTGGCCTAGACAGATTCG 59.895 60.0 3.32 0.0 0.0 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2000 2003 0.328258 TGCTCCCAGGCTCTAAAACC 59.672 55.0 0.0 0.0 0.0 3.27 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.775654 GTGGTGGGCCCGAGAGAG 61.776 72.222 19.37 0.00 35.15 3.20
22 23 3.844090 GTGGGCCCGAGAGAGCTC 61.844 72.222 19.37 5.27 37.81 4.09
30 31 3.716585 GAGAGAGCTCGCAATGGC 58.283 61.111 20.08 0.00 34.09 4.40
46 47 3.706140 GCGATTCTCGGCGACATT 58.294 55.556 4.99 0.00 40.84 2.71
47 48 1.560292 GCGATTCTCGGCGACATTC 59.440 57.895 4.99 0.70 40.84 2.67
48 49 1.840061 CGATTCTCGGCGACATTCG 59.160 57.895 4.99 10.37 43.89 3.34
49 50 1.540607 CGATTCTCGGCGACATTCGG 61.541 60.000 17.59 3.74 40.84 4.30
50 51 1.215655 GATTCTCGGCGACATTCGGG 61.216 60.000 4.99 0.00 40.84 5.14
51 52 1.672854 ATTCTCGGCGACATTCGGGA 61.673 55.000 4.99 0.00 40.84 5.14
52 53 1.672854 TTCTCGGCGACATTCGGGAT 61.673 55.000 4.99 0.00 40.84 3.85
53 54 1.227263 CTCGGCGACATTCGGGATT 60.227 57.895 4.99 0.00 40.84 3.01
54 55 1.490693 CTCGGCGACATTCGGGATTG 61.491 60.000 4.99 0.00 40.84 2.67
55 56 2.534019 CGGCGACATTCGGGATTGG 61.534 63.158 0.00 0.00 40.84 3.16
56 57 1.451387 GGCGACATTCGGGATTGGT 60.451 57.895 0.00 0.00 40.84 3.67
57 58 1.436983 GGCGACATTCGGGATTGGTC 61.437 60.000 0.00 0.00 40.84 4.02
58 59 1.762222 GCGACATTCGGGATTGGTCG 61.762 60.000 8.00 8.00 40.84 4.79
59 60 0.179121 CGACATTCGGGATTGGTCGA 60.179 55.000 6.65 0.00 36.00 4.20
60 61 1.571919 GACATTCGGGATTGGTCGAG 58.428 55.000 0.00 0.00 36.72 4.04
61 62 0.462047 ACATTCGGGATTGGTCGAGC 60.462 55.000 7.89 7.89 36.72 5.03
62 63 1.227263 ATTCGGGATTGGTCGAGCG 60.227 57.895 10.46 0.00 36.72 5.03
63 64 4.508128 TCGGGATTGGTCGAGCGC 62.508 66.667 10.46 0.00 0.00 5.92
64 65 4.514577 CGGGATTGGTCGAGCGCT 62.515 66.667 11.27 11.27 0.00 5.92
65 66 2.812499 GGGATTGGTCGAGCGCTA 59.188 61.111 11.50 0.00 0.00 4.26
66 67 1.300233 GGGATTGGTCGAGCGCTAG 60.300 63.158 11.50 11.63 0.00 3.42
67 68 1.300233 GGATTGGTCGAGCGCTAGG 60.300 63.158 11.50 5.59 0.00 3.02
68 69 1.437986 GATTGGTCGAGCGCTAGGT 59.562 57.895 11.50 0.00 0.00 3.08
69 70 0.179108 GATTGGTCGAGCGCTAGGTT 60.179 55.000 11.50 0.00 0.00 3.50
70 71 0.249398 ATTGGTCGAGCGCTAGGTTT 59.751 50.000 11.50 0.00 0.00 3.27
71 72 0.669318 TTGGTCGAGCGCTAGGTTTG 60.669 55.000 11.50 0.00 0.00 2.93
72 73 1.810030 GGTCGAGCGCTAGGTTTGG 60.810 63.158 11.50 0.00 0.00 3.28
73 74 1.080025 GTCGAGCGCTAGGTTTGGT 60.080 57.895 11.50 0.00 0.00 3.67
74 75 1.080093 TCGAGCGCTAGGTTTGGTG 60.080 57.895 11.50 0.00 0.00 4.17
75 76 1.374252 CGAGCGCTAGGTTTGGTGT 60.374 57.895 11.50 0.00 0.00 4.16
76 77 1.626654 CGAGCGCTAGGTTTGGTGTG 61.627 60.000 11.50 0.00 0.00 3.82
77 78 1.298859 GAGCGCTAGGTTTGGTGTGG 61.299 60.000 11.50 0.00 0.00 4.17
78 79 2.332654 GCGCTAGGTTTGGTGTGGG 61.333 63.158 0.00 0.00 0.00 4.61
79 80 1.072505 CGCTAGGTTTGGTGTGGGT 59.927 57.895 0.00 0.00 0.00 4.51
80 81 1.234615 CGCTAGGTTTGGTGTGGGTG 61.235 60.000 0.00 0.00 0.00 4.61
81 82 0.893727 GCTAGGTTTGGTGTGGGTGG 60.894 60.000 0.00 0.00 0.00 4.61
82 83 0.893727 CTAGGTTTGGTGTGGGTGGC 60.894 60.000 0.00 0.00 0.00 5.01
83 84 2.360439 TAGGTTTGGTGTGGGTGGCC 62.360 60.000 0.00 0.00 0.00 5.36
84 85 2.123468 GTTTGGTGTGGGTGGCCT 60.123 61.111 3.32 0.00 0.00 5.19
85 86 1.151908 GTTTGGTGTGGGTGGCCTA 59.848 57.895 3.32 0.00 0.00 3.93
86 87 0.893727 GTTTGGTGTGGGTGGCCTAG 60.894 60.000 3.32 0.00 0.00 3.02
87 88 1.063070 TTTGGTGTGGGTGGCCTAGA 61.063 55.000 3.32 0.00 0.00 2.43
88 89 1.774894 TTGGTGTGGGTGGCCTAGAC 61.775 60.000 3.32 0.00 0.00 2.59
89 90 2.221299 GGTGTGGGTGGCCTAGACA 61.221 63.158 3.32 0.00 30.13 3.41
90 91 1.296715 GTGTGGGTGGCCTAGACAG 59.703 63.158 3.32 0.00 29.08 3.51
91 92 1.157513 TGTGGGTGGCCTAGACAGA 59.842 57.895 3.32 0.00 0.00 3.41
92 93 0.252696 TGTGGGTGGCCTAGACAGAT 60.253 55.000 3.32 0.00 0.00 2.90
93 94 0.912486 GTGGGTGGCCTAGACAGATT 59.088 55.000 3.32 0.00 0.00 2.40
94 95 1.134371 GTGGGTGGCCTAGACAGATTC 60.134 57.143 3.32 0.00 0.00 2.52
95 96 0.105039 GGGTGGCCTAGACAGATTCG 59.895 60.000 3.32 0.00 0.00 3.34
96 97 0.824759 GGTGGCCTAGACAGATTCGT 59.175 55.000 3.32 0.00 0.00 3.85
97 98 1.471676 GGTGGCCTAGACAGATTCGTG 60.472 57.143 3.32 0.00 0.00 4.35
98 99 1.476891 GTGGCCTAGACAGATTCGTGA 59.523 52.381 3.32 0.00 0.00 4.35
99 100 1.751351 TGGCCTAGACAGATTCGTGAG 59.249 52.381 3.32 0.00 0.00 3.51
100 101 1.067821 GGCCTAGACAGATTCGTGAGG 59.932 57.143 0.00 0.00 0.00 3.86
101 102 2.025155 GCCTAGACAGATTCGTGAGGA 58.975 52.381 0.00 0.00 0.00 3.71
102 103 2.034053 GCCTAGACAGATTCGTGAGGAG 59.966 54.545 0.00 0.00 0.00 3.69
103 104 3.283751 CCTAGACAGATTCGTGAGGAGT 58.716 50.000 0.00 0.00 0.00 3.85
104 105 3.697045 CCTAGACAGATTCGTGAGGAGTT 59.303 47.826 0.00 0.00 0.00 3.01
105 106 4.882427 CCTAGACAGATTCGTGAGGAGTTA 59.118 45.833 0.00 0.00 0.00 2.24
106 107 4.974368 AGACAGATTCGTGAGGAGTTAG 57.026 45.455 0.00 0.00 0.00 2.34
107 108 3.129638 AGACAGATTCGTGAGGAGTTAGC 59.870 47.826 0.00 0.00 0.00 3.09
108 109 3.093057 ACAGATTCGTGAGGAGTTAGCT 58.907 45.455 0.00 0.00 0.00 3.32
109 110 3.511934 ACAGATTCGTGAGGAGTTAGCTT 59.488 43.478 0.00 0.00 0.00 3.74
110 111 4.021016 ACAGATTCGTGAGGAGTTAGCTTT 60.021 41.667 0.00 0.00 0.00 3.51
111 112 4.932200 CAGATTCGTGAGGAGTTAGCTTTT 59.068 41.667 0.00 0.00 0.00 2.27
112 113 4.932200 AGATTCGTGAGGAGTTAGCTTTTG 59.068 41.667 0.00 0.00 0.00 2.44
113 114 3.040147 TCGTGAGGAGTTAGCTTTTGG 57.960 47.619 0.00 0.00 0.00 3.28
114 115 2.367567 TCGTGAGGAGTTAGCTTTTGGT 59.632 45.455 0.00 0.00 0.00 3.67
115 116 3.139077 CGTGAGGAGTTAGCTTTTGGTT 58.861 45.455 0.00 0.00 0.00 3.67
116 117 3.564225 CGTGAGGAGTTAGCTTTTGGTTT 59.436 43.478 0.00 0.00 0.00 3.27
117 118 4.036380 CGTGAGGAGTTAGCTTTTGGTTTT 59.964 41.667 0.00 0.00 0.00 2.43
118 119 5.449999 CGTGAGGAGTTAGCTTTTGGTTTTT 60.450 40.000 0.00 0.00 0.00 1.94
133 134 1.810532 TTTTTCGGTGTGGGTGTGC 59.189 52.632 0.00 0.00 0.00 4.57
134 135 0.681564 TTTTTCGGTGTGGGTGTGCT 60.682 50.000 0.00 0.00 0.00 4.40
135 136 1.380403 TTTTCGGTGTGGGTGTGCTG 61.380 55.000 0.00 0.00 0.00 4.41
136 137 3.765894 TTCGGTGTGGGTGTGCTGG 62.766 63.158 0.00 0.00 0.00 4.85
139 140 4.927782 GTGTGGGTGTGCTGGCGA 62.928 66.667 0.00 0.00 0.00 5.54
140 141 4.927782 TGTGGGTGTGCTGGCGAC 62.928 66.667 0.00 0.00 0.00 5.19
141 142 4.626081 GTGGGTGTGCTGGCGACT 62.626 66.667 0.00 0.00 0.00 4.18
142 143 2.920384 TGGGTGTGCTGGCGACTA 60.920 61.111 0.00 0.00 0.00 2.59
143 144 2.345991 GGGTGTGCTGGCGACTAA 59.654 61.111 0.00 0.00 0.00 2.24
144 145 1.078426 GGGTGTGCTGGCGACTAAT 60.078 57.895 0.00 0.00 0.00 1.73
145 146 1.369091 GGGTGTGCTGGCGACTAATG 61.369 60.000 0.00 0.00 0.00 1.90
146 147 0.673644 GGTGTGCTGGCGACTAATGT 60.674 55.000 0.00 0.00 0.00 2.71
147 148 1.156736 GTGTGCTGGCGACTAATGTT 58.843 50.000 0.00 0.00 0.00 2.71
148 149 1.128692 GTGTGCTGGCGACTAATGTTC 59.871 52.381 0.00 0.00 0.00 3.18
149 150 0.370273 GTGCTGGCGACTAATGTTCG 59.630 55.000 0.00 0.00 0.00 3.95
158 159 3.333723 CGACTAATGTTCGCATTGTTCG 58.666 45.455 3.39 6.94 46.36 3.95
159 160 3.181534 CGACTAATGTTCGCATTGTTCGT 60.182 43.478 12.86 3.44 46.36 3.85
160 161 4.322101 ACTAATGTTCGCATTGTTCGTC 57.678 40.909 3.39 0.00 46.36 4.20
161 162 2.226262 AATGTTCGCATTGTTCGTCG 57.774 45.000 0.00 0.00 45.31 5.12
162 163 0.442310 ATGTTCGCATTGTTCGTCGG 59.558 50.000 0.00 0.00 33.21 4.79
163 164 0.876777 TGTTCGCATTGTTCGTCGGT 60.877 50.000 0.00 0.00 0.00 4.69
164 165 0.179258 GTTCGCATTGTTCGTCGGTC 60.179 55.000 0.00 0.00 0.00 4.79
165 166 0.319211 TTCGCATTGTTCGTCGGTCT 60.319 50.000 0.00 0.00 0.00 3.85
166 167 0.731514 TCGCATTGTTCGTCGGTCTC 60.732 55.000 0.00 0.00 0.00 3.36
167 168 0.732880 CGCATTGTTCGTCGGTCTCT 60.733 55.000 0.00 0.00 0.00 3.10
168 169 1.429463 GCATTGTTCGTCGGTCTCTT 58.571 50.000 0.00 0.00 0.00 2.85
169 170 1.126846 GCATTGTTCGTCGGTCTCTTG 59.873 52.381 0.00 0.00 0.00 3.02
170 171 2.404215 CATTGTTCGTCGGTCTCTTGT 58.596 47.619 0.00 0.00 0.00 3.16
171 172 3.571571 CATTGTTCGTCGGTCTCTTGTA 58.428 45.455 0.00 0.00 0.00 2.41
172 173 3.713858 TTGTTCGTCGGTCTCTTGTAA 57.286 42.857 0.00 0.00 0.00 2.41
173 174 3.713858 TGTTCGTCGGTCTCTTGTAAA 57.286 42.857 0.00 0.00 0.00 2.01
174 175 4.247267 TGTTCGTCGGTCTCTTGTAAAT 57.753 40.909 0.00 0.00 0.00 1.40
175 176 5.375417 TGTTCGTCGGTCTCTTGTAAATA 57.625 39.130 0.00 0.00 0.00 1.40
176 177 5.156355 TGTTCGTCGGTCTCTTGTAAATAC 58.844 41.667 0.00 0.00 0.00 1.89
177 178 5.048504 TGTTCGTCGGTCTCTTGTAAATACT 60.049 40.000 0.00 0.00 0.00 2.12
178 179 5.633830 TCGTCGGTCTCTTGTAAATACTT 57.366 39.130 0.00 0.00 0.00 2.24
179 180 6.017400 TCGTCGGTCTCTTGTAAATACTTT 57.983 37.500 0.00 0.00 0.00 2.66
180 181 5.860182 TCGTCGGTCTCTTGTAAATACTTTG 59.140 40.000 0.00 0.00 0.00 2.77
181 182 5.444218 CGTCGGTCTCTTGTAAATACTTTGC 60.444 44.000 0.00 0.00 0.00 3.68
182 183 5.638234 GTCGGTCTCTTGTAAATACTTTGCT 59.362 40.000 0.00 0.00 0.00 3.91
183 184 6.147328 GTCGGTCTCTTGTAAATACTTTGCTT 59.853 38.462 0.00 0.00 0.00 3.91
184 185 6.367969 TCGGTCTCTTGTAAATACTTTGCTTC 59.632 38.462 0.00 0.00 0.00 3.86
185 186 6.402226 CGGTCTCTTGTAAATACTTTGCTTCC 60.402 42.308 0.00 0.00 0.00 3.46
186 187 6.655425 GGTCTCTTGTAAATACTTTGCTTCCT 59.345 38.462 0.00 0.00 0.00 3.36
187 188 7.175119 GGTCTCTTGTAAATACTTTGCTTCCTT 59.825 37.037 0.00 0.00 0.00 3.36
188 189 8.231161 GTCTCTTGTAAATACTTTGCTTCCTTC 58.769 37.037 0.00 0.00 0.00 3.46
189 190 8.157476 TCTCTTGTAAATACTTTGCTTCCTTCT 58.843 33.333 0.00 0.00 0.00 2.85
190 191 9.436957 CTCTTGTAAATACTTTGCTTCCTTCTA 57.563 33.333 0.00 0.00 0.00 2.10
191 192 9.959721 TCTTGTAAATACTTTGCTTCCTTCTAT 57.040 29.630 0.00 0.00 0.00 1.98
205 206 9.268268 TGCTTCCTTCTATAAAAATATGGTACG 57.732 33.333 0.00 0.00 0.00 3.67
206 207 8.228464 GCTTCCTTCTATAAAAATATGGTACGC 58.772 37.037 0.00 0.00 0.00 4.42
207 208 8.611654 TTCCTTCTATAAAAATATGGTACGCC 57.388 34.615 0.00 0.00 0.00 5.68
222 223 3.706140 GCCATTGGCGTACTCTCG 58.294 61.111 12.82 0.00 39.62 4.04
223 224 1.141019 GCCATTGGCGTACTCTCGA 59.859 57.895 12.82 0.00 39.62 4.04
224 225 0.459585 GCCATTGGCGTACTCTCGAA 60.460 55.000 12.82 0.00 39.62 3.71
225 226 2.004583 CCATTGGCGTACTCTCGAAA 57.995 50.000 0.00 0.00 0.00 3.46
226 227 2.343101 CCATTGGCGTACTCTCGAAAA 58.657 47.619 0.00 0.00 0.00 2.29
227 228 2.739913 CCATTGGCGTACTCTCGAAAAA 59.260 45.455 0.00 0.00 0.00 1.94
319 322 4.500116 GAGGAGTCGGCGAGCACC 62.500 72.222 11.20 14.19 0.00 5.01
434 437 4.519437 CGGCGATGAGGCTGAGCA 62.519 66.667 6.82 0.00 41.96 4.26
466 469 1.004560 CAGCGGAGAGAAGGCAACA 60.005 57.895 0.00 0.00 41.41 3.33
501 504 4.779733 GACGCTGGAGGGGGAGGA 62.780 72.222 0.00 0.00 0.00 3.71
502 505 4.787280 ACGCTGGAGGGGGAGGAG 62.787 72.222 0.00 0.00 0.00 3.69
503 506 4.465446 CGCTGGAGGGGGAGGAGA 62.465 72.222 0.00 0.00 0.00 3.71
504 507 2.288643 GCTGGAGGGGGAGGAGAT 59.711 66.667 0.00 0.00 0.00 2.75
505 508 2.146061 GCTGGAGGGGGAGGAGATG 61.146 68.421 0.00 0.00 0.00 2.90
506 509 1.461075 CTGGAGGGGGAGGAGATGG 60.461 68.421 0.00 0.00 0.00 3.51
507 510 2.851588 GGAGGGGGAGGAGATGGC 60.852 72.222 0.00 0.00 0.00 4.40
508 511 3.237741 GAGGGGGAGGAGATGGCG 61.238 72.222 0.00 0.00 0.00 5.69
509 512 4.888325 AGGGGGAGGAGATGGCGG 62.888 72.222 0.00 0.00 0.00 6.13
510 513 4.880426 GGGGGAGGAGATGGCGGA 62.880 72.222 0.00 0.00 0.00 5.54
511 514 3.237741 GGGGAGGAGATGGCGGAG 61.238 72.222 0.00 0.00 0.00 4.63
512 515 3.237741 GGGAGGAGATGGCGGAGG 61.238 72.222 0.00 0.00 0.00 4.30
535 538 3.793144 CGCAGGGCAAAGCTCGTC 61.793 66.667 0.00 0.00 32.17 4.20
536 539 2.359230 GCAGGGCAAAGCTCGTCT 60.359 61.111 0.00 0.00 32.17 4.18
537 540 2.684843 GCAGGGCAAAGCTCGTCTG 61.685 63.158 0.00 0.00 32.17 3.51
538 541 2.359230 AGGGCAAAGCTCGTCTGC 60.359 61.111 0.00 0.00 32.17 4.26
539 542 2.359230 GGGCAAAGCTCGTCTGCT 60.359 61.111 9.16 0.00 46.40 4.24
540 543 2.684843 GGGCAAAGCTCGTCTGCTG 61.685 63.158 9.16 0.00 43.24 4.41
541 544 2.684843 GGCAAAGCTCGTCTGCTGG 61.685 63.158 9.16 0.20 43.24 4.85
542 545 2.684843 GCAAAGCTCGTCTGCTGGG 61.685 63.158 0.00 0.00 43.24 4.45
543 546 2.359230 AAAGCTCGTCTGCTGGGC 60.359 61.111 0.00 0.00 43.24 5.36
544 547 4.749310 AAGCTCGTCTGCTGGGCG 62.749 66.667 0.00 0.00 43.24 6.13
559 562 4.899239 GCGGCGGAGACCCTGATG 62.899 72.222 9.78 0.00 0.00 3.07
560 563 4.899239 CGGCGGAGACCCTGATGC 62.899 72.222 0.00 0.00 0.00 3.91
561 564 3.474570 GGCGGAGACCCTGATGCT 61.475 66.667 0.00 0.00 0.00 3.79
562 565 2.202987 GCGGAGACCCTGATGCTG 60.203 66.667 0.00 0.00 0.00 4.41
563 566 3.023949 GCGGAGACCCTGATGCTGT 62.024 63.158 0.00 0.00 0.00 4.40
564 567 1.142748 CGGAGACCCTGATGCTGTC 59.857 63.158 0.00 0.00 0.00 3.51
565 568 1.142748 GGAGACCCTGATGCTGTCG 59.857 63.158 0.00 0.00 34.24 4.35
566 569 1.142748 GAGACCCTGATGCTGTCGG 59.857 63.158 0.00 0.00 34.24 4.79
567 570 1.608717 GAGACCCTGATGCTGTCGGT 61.609 60.000 0.00 0.00 34.24 4.69
568 571 1.448540 GACCCTGATGCTGTCGGTG 60.449 63.158 0.00 0.00 0.00 4.94
569 572 2.124983 CCCTGATGCTGTCGGTGG 60.125 66.667 0.00 0.00 0.00 4.61
570 573 2.665000 CCTGATGCTGTCGGTGGT 59.335 61.111 0.00 0.00 0.00 4.16
571 574 1.448540 CCTGATGCTGTCGGTGGTC 60.449 63.158 0.00 0.00 0.00 4.02
572 575 1.807165 CTGATGCTGTCGGTGGTCG 60.807 63.158 0.00 0.00 40.90 4.79
573 576 3.188786 GATGCTGTCGGTGGTCGC 61.189 66.667 0.00 0.00 39.05 5.19
574 577 4.760047 ATGCTGTCGGTGGTCGCC 62.760 66.667 0.00 0.00 39.05 5.54
576 579 4.760047 GCTGTCGGTGGTCGCCAT 62.760 66.667 1.90 0.00 35.28 4.40
577 580 2.815211 CTGTCGGTGGTCGCCATG 60.815 66.667 1.90 0.00 35.28 3.66
578 581 4.386951 TGTCGGTGGTCGCCATGG 62.387 66.667 7.63 7.63 35.28 3.66
583 586 4.408821 GTGGTCGCCATGGCTGGA 62.409 66.667 33.07 21.57 46.37 3.86
584 587 4.100084 TGGTCGCCATGGCTGGAG 62.100 66.667 33.07 18.40 46.37 3.86
585 588 4.864334 GGTCGCCATGGCTGGAGG 62.864 72.222 33.07 18.02 46.37 4.30
590 593 4.517934 CCATGGCTGGAGGCTGGG 62.518 72.222 0.00 0.00 46.37 4.45
591 594 4.517934 CATGGCTGGAGGCTGGGG 62.518 72.222 0.00 0.00 41.69 4.96
595 598 4.432741 GCTGGAGGCTGGGGGTTC 62.433 72.222 0.00 0.00 38.06 3.62
596 599 3.732849 CTGGAGGCTGGGGGTTCC 61.733 72.222 0.00 0.00 0.00 3.62
597 600 4.285790 TGGAGGCTGGGGGTTCCT 62.286 66.667 0.00 0.00 36.20 3.36
598 601 2.941583 GGAGGCTGGGGGTTCCTT 60.942 66.667 0.00 0.00 36.20 3.36
599 602 2.548547 GGAGGCTGGGGGTTCCTTT 61.549 63.158 0.00 0.00 36.20 3.11
600 603 1.304464 GAGGCTGGGGGTTCCTTTG 60.304 63.158 0.00 0.00 36.20 2.77
601 604 2.283894 GGCTGGGGGTTCCTTTGG 60.284 66.667 0.00 0.00 36.20 3.28
602 605 2.851045 GCTGGGGGTTCCTTTGGA 59.149 61.111 0.00 0.00 36.20 3.53
603 606 1.606601 GCTGGGGGTTCCTTTGGAC 60.607 63.158 0.00 0.00 36.20 4.02
604 607 2.081585 GCTGGGGGTTCCTTTGGACT 62.082 60.000 0.00 0.00 36.20 3.85
605 608 0.482887 CTGGGGGTTCCTTTGGACTT 59.517 55.000 0.00 0.00 36.20 3.01
606 609 0.481128 TGGGGGTTCCTTTGGACTTC 59.519 55.000 0.00 0.00 36.20 3.01
607 610 0.251653 GGGGGTTCCTTTGGACTTCC 60.252 60.000 0.00 0.00 0.00 3.46
608 611 0.481128 GGGGTTCCTTTGGACTTCCA 59.519 55.000 0.00 0.00 45.94 3.53
609 612 1.077169 GGGGTTCCTTTGGACTTCCAT 59.923 52.381 0.00 0.00 46.97 3.41
610 613 2.171003 GGGTTCCTTTGGACTTCCATG 58.829 52.381 0.00 0.00 46.97 3.66
611 614 2.490902 GGGTTCCTTTGGACTTCCATGT 60.491 50.000 0.00 0.00 46.97 3.21
612 615 3.230976 GGTTCCTTTGGACTTCCATGTT 58.769 45.455 0.00 0.00 46.97 2.71
613 616 3.005791 GGTTCCTTTGGACTTCCATGTTG 59.994 47.826 0.00 0.00 46.97 3.33
614 617 3.874383 TCCTTTGGACTTCCATGTTGA 57.126 42.857 0.00 0.00 46.97 3.18
615 618 4.387026 TCCTTTGGACTTCCATGTTGAT 57.613 40.909 0.00 0.00 46.97 2.57
616 619 4.335416 TCCTTTGGACTTCCATGTTGATC 58.665 43.478 0.00 0.00 46.97 2.92
617 620 4.043310 TCCTTTGGACTTCCATGTTGATCT 59.957 41.667 0.00 0.00 46.97 2.75
618 621 4.157289 CCTTTGGACTTCCATGTTGATCTG 59.843 45.833 0.00 0.00 46.97 2.90
619 622 3.354948 TGGACTTCCATGTTGATCTGG 57.645 47.619 0.00 0.00 42.01 3.86
620 623 2.912295 TGGACTTCCATGTTGATCTGGA 59.088 45.455 0.00 0.00 42.01 3.86
621 624 3.054875 TGGACTTCCATGTTGATCTGGAG 60.055 47.826 2.05 0.85 42.32 3.86
622 625 3.198635 GGACTTCCATGTTGATCTGGAGA 59.801 47.826 2.05 0.00 42.32 3.71
623 626 4.440880 GACTTCCATGTTGATCTGGAGAG 58.559 47.826 2.05 5.78 42.32 3.20
624 627 3.199508 ACTTCCATGTTGATCTGGAGAGG 59.800 47.826 2.05 1.07 42.32 3.69
625 628 2.121948 TCCATGTTGATCTGGAGAGGG 58.878 52.381 0.00 0.00 36.63 4.30
626 629 2.121948 CCATGTTGATCTGGAGAGGGA 58.878 52.381 0.00 0.00 34.24 4.20
627 630 2.507058 CCATGTTGATCTGGAGAGGGAA 59.493 50.000 0.00 0.00 34.24 3.97
628 631 3.137913 CCATGTTGATCTGGAGAGGGAAT 59.862 47.826 0.00 0.00 34.24 3.01
629 632 3.920231 TGTTGATCTGGAGAGGGAATG 57.080 47.619 0.00 0.00 0.00 2.67
630 633 3.184628 TGTTGATCTGGAGAGGGAATGT 58.815 45.455 0.00 0.00 0.00 2.71
631 634 4.361783 TGTTGATCTGGAGAGGGAATGTA 58.638 43.478 0.00 0.00 0.00 2.29
632 635 4.971282 TGTTGATCTGGAGAGGGAATGTAT 59.029 41.667 0.00 0.00 0.00 2.29
633 636 5.429762 TGTTGATCTGGAGAGGGAATGTATT 59.570 40.000 0.00 0.00 0.00 1.89
634 637 5.815233 TGATCTGGAGAGGGAATGTATTC 57.185 43.478 0.00 0.00 36.08 1.75
635 638 5.471424 TGATCTGGAGAGGGAATGTATTCT 58.529 41.667 4.75 0.00 37.00 2.40
636 639 5.541868 TGATCTGGAGAGGGAATGTATTCTC 59.458 44.000 4.75 0.64 37.55 2.87
637 640 3.891977 TCTGGAGAGGGAATGTATTCTCG 59.108 47.826 4.75 0.00 42.10 4.04
638 641 3.891977 CTGGAGAGGGAATGTATTCTCGA 59.108 47.826 4.75 0.00 42.10 4.04
639 642 3.891977 TGGAGAGGGAATGTATTCTCGAG 59.108 47.826 5.93 5.93 42.10 4.04
640 643 3.257127 GGAGAGGGAATGTATTCTCGAGG 59.743 52.174 13.56 0.00 42.10 4.63
641 644 3.235200 AGAGGGAATGTATTCTCGAGGG 58.765 50.000 13.56 0.00 42.10 4.30
642 645 2.300437 GAGGGAATGTATTCTCGAGGGG 59.700 54.545 13.56 0.00 42.10 4.79
643 646 2.047830 GGGAATGTATTCTCGAGGGGT 58.952 52.381 13.56 1.43 37.00 4.95
644 647 3.116862 AGGGAATGTATTCTCGAGGGGTA 60.117 47.826 13.56 0.41 42.10 3.69
645 648 3.838903 GGGAATGTATTCTCGAGGGGTAT 59.161 47.826 13.56 4.24 37.00 2.73
646 649 4.286291 GGGAATGTATTCTCGAGGGGTATT 59.714 45.833 13.56 7.47 37.00 1.89
647 650 5.221864 GGGAATGTATTCTCGAGGGGTATTT 60.222 44.000 13.56 0.48 37.00 1.40
648 651 6.013984 GGGAATGTATTCTCGAGGGGTATTTA 60.014 42.308 13.56 0.00 37.00 1.40
649 652 7.447594 GGAATGTATTCTCGAGGGGTATTTAA 58.552 38.462 13.56 0.00 37.00 1.52
650 653 7.387122 GGAATGTATTCTCGAGGGGTATTTAAC 59.613 40.741 13.56 0.00 37.00 2.01
651 654 5.835257 TGTATTCTCGAGGGGTATTTAACG 58.165 41.667 13.56 0.00 0.00 3.18
652 655 5.593909 TGTATTCTCGAGGGGTATTTAACGA 59.406 40.000 13.56 0.00 0.00 3.85
653 656 4.644103 TTCTCGAGGGGTATTTAACGAG 57.356 45.455 13.56 0.00 45.20 4.18
654 657 2.360165 TCTCGAGGGGTATTTAACGAGC 59.640 50.000 13.56 0.00 44.08 5.03
655 658 1.066002 TCGAGGGGTATTTAACGAGCG 59.934 52.381 0.00 0.00 0.00 5.03
656 659 1.861971 GAGGGGTATTTAACGAGCGG 58.138 55.000 0.00 0.00 0.00 5.52
657 660 1.410153 GAGGGGTATTTAACGAGCGGA 59.590 52.381 0.00 0.00 0.00 5.54
658 661 1.411612 AGGGGTATTTAACGAGCGGAG 59.588 52.381 0.00 0.00 0.00 4.63
659 662 1.137675 GGGGTATTTAACGAGCGGAGT 59.862 52.381 0.00 0.00 0.00 3.85
660 663 2.199236 GGGTATTTAACGAGCGGAGTG 58.801 52.381 0.00 0.00 0.00 3.51
661 664 2.199236 GGTATTTAACGAGCGGAGTGG 58.801 52.381 0.00 0.00 0.00 4.00
662 665 2.199236 GTATTTAACGAGCGGAGTGGG 58.801 52.381 0.00 0.00 0.00 4.61
663 666 0.899720 ATTTAACGAGCGGAGTGGGA 59.100 50.000 0.00 0.00 0.00 4.37
664 667 0.245539 TTTAACGAGCGGAGTGGGAG 59.754 55.000 0.00 0.00 0.00 4.30
665 668 0.609957 TTAACGAGCGGAGTGGGAGA 60.610 55.000 0.00 0.00 0.00 3.71
666 669 0.609957 TAACGAGCGGAGTGGGAGAA 60.610 55.000 0.00 0.00 0.00 2.87
667 670 1.878656 AACGAGCGGAGTGGGAGAAG 61.879 60.000 0.00 0.00 0.00 2.85
668 671 2.046864 CGAGCGGAGTGGGAGAAGA 61.047 63.158 0.00 0.00 0.00 2.87
669 672 1.595993 CGAGCGGAGTGGGAGAAGAA 61.596 60.000 0.00 0.00 0.00 2.52
670 673 0.174617 GAGCGGAGTGGGAGAAGAAG 59.825 60.000 0.00 0.00 0.00 2.85
698 701 6.550938 TGCATGGAGAATTCTAAGAAGAGA 57.449 37.500 8.25 0.00 31.96 3.10
1083 1086 1.547372 GCTCACATCAACCCTGCAAAT 59.453 47.619 0.00 0.00 0.00 2.32
1649 1652 6.911250 TGGAAAGTTGATCTCTGTACACTA 57.089 37.500 0.00 0.00 0.00 2.74
1727 1730 6.775629 AGGGCTAGTCTGTTTTTGTATTTGAA 59.224 34.615 0.00 0.00 0.00 2.69
1793 1796 2.557805 GACGTGTGCGGTCTCGTA 59.442 61.111 0.00 0.00 43.45 3.43
1801 1804 2.789917 CGGTCTCGTAGGGACACG 59.210 66.667 2.29 0.24 43.28 4.49
1831 1834 3.322466 CCTCCAGCACGGTCCCTT 61.322 66.667 0.00 0.00 35.57 3.95
1842 1845 1.524863 CGGTCCCTTCGTGTGAGTCT 61.525 60.000 0.00 0.00 0.00 3.24
1851 1854 1.067693 CGTGTGAGTCTTGCGCAATA 58.932 50.000 25.26 14.54 0.00 1.90
1879 1882 2.978824 CCGGAGGCGGAGAAAGAA 59.021 61.111 0.00 0.00 46.14 2.52
1895 1898 2.920912 AAACGTCCGGCCTCCAGA 60.921 61.111 0.00 0.00 0.00 3.86
1917 1920 1.898154 GTCCCTGCGTGTGAGGTAT 59.102 57.895 0.00 0.00 0.00 2.73
1918 1921 1.108776 GTCCCTGCGTGTGAGGTATA 58.891 55.000 0.00 0.00 0.00 1.47
1919 1922 1.687123 GTCCCTGCGTGTGAGGTATAT 59.313 52.381 0.00 0.00 0.00 0.86
1920 1923 2.102588 GTCCCTGCGTGTGAGGTATATT 59.897 50.000 0.00 0.00 0.00 1.28
1921 1924 2.769663 TCCCTGCGTGTGAGGTATATTT 59.230 45.455 0.00 0.00 0.00 1.40
1922 1925 2.872245 CCCTGCGTGTGAGGTATATTTG 59.128 50.000 0.00 0.00 0.00 2.32
1923 1926 3.431626 CCCTGCGTGTGAGGTATATTTGA 60.432 47.826 0.00 0.00 0.00 2.69
1924 1927 3.804325 CCTGCGTGTGAGGTATATTTGAG 59.196 47.826 0.00 0.00 0.00 3.02
1925 1928 4.433615 CTGCGTGTGAGGTATATTTGAGT 58.566 43.478 0.00 0.00 0.00 3.41
1926 1929 4.827692 TGCGTGTGAGGTATATTTGAGTT 58.172 39.130 0.00 0.00 0.00 3.01
1927 1930 5.242434 TGCGTGTGAGGTATATTTGAGTTT 58.758 37.500 0.00 0.00 0.00 2.66
1928 1931 5.703592 TGCGTGTGAGGTATATTTGAGTTTT 59.296 36.000 0.00 0.00 0.00 2.43
1929 1932 6.205853 TGCGTGTGAGGTATATTTGAGTTTTT 59.794 34.615 0.00 0.00 0.00 1.94
1955 1958 7.721409 TTTATGTATGAAAGGGGGTTAAACC 57.279 36.000 0.00 0.00 37.60 3.27
1975 1978 3.315880 CCCCCGGTCCCATTTTATAAA 57.684 47.619 0.00 0.00 0.00 1.40
1976 1979 3.851979 CCCCCGGTCCCATTTTATAAAT 58.148 45.455 0.00 0.00 0.00 1.40
1977 1980 3.576550 CCCCCGGTCCCATTTTATAAATG 59.423 47.826 0.00 5.39 0.00 2.32
1978 1981 4.475345 CCCCGGTCCCATTTTATAAATGA 58.525 43.478 12.43 0.00 0.00 2.57
1979 1982 4.896482 CCCCGGTCCCATTTTATAAATGAA 59.104 41.667 12.43 0.09 0.00 2.57
1980 1983 5.364157 CCCCGGTCCCATTTTATAAATGAAA 59.636 40.000 12.43 0.00 0.00 2.69
1981 1984 6.277605 CCCGGTCCCATTTTATAAATGAAAC 58.722 40.000 12.43 9.68 0.00 2.78
1982 1985 6.277605 CCGGTCCCATTTTATAAATGAAACC 58.722 40.000 12.43 15.24 32.99 3.27
1983 1986 6.127310 CCGGTCCCATTTTATAAATGAAACCA 60.127 38.462 21.89 0.00 34.51 3.67
1984 1987 6.978080 CGGTCCCATTTTATAAATGAAACCAG 59.022 38.462 21.89 15.72 34.51 4.00
1985 1988 7.147983 CGGTCCCATTTTATAAATGAAACCAGA 60.148 37.037 21.89 7.84 34.51 3.86
1986 1989 8.536175 GGTCCCATTTTATAAATGAAACCAGAA 58.464 33.333 19.67 0.00 34.74 3.02
1987 1990 9.936759 GTCCCATTTTATAAATGAAACCAGAAA 57.063 29.630 12.43 0.00 0.00 2.52
1997 2000 7.595819 AAATGAAACCAGAAAATCCAGTACA 57.404 32.000 0.00 0.00 0.00 2.90
1998 2001 6.575162 ATGAAACCAGAAAATCCAGTACAC 57.425 37.500 0.00 0.00 0.00 2.90
1999 2002 5.441500 TGAAACCAGAAAATCCAGTACACA 58.558 37.500 0.00 0.00 0.00 3.72
2000 2003 5.530915 TGAAACCAGAAAATCCAGTACACAG 59.469 40.000 0.00 0.00 0.00 3.66
2001 2004 4.021102 ACCAGAAAATCCAGTACACAGG 57.979 45.455 0.00 0.00 0.00 4.00
2002 2005 3.394606 ACCAGAAAATCCAGTACACAGGT 59.605 43.478 0.00 0.00 0.00 4.00
2003 2006 4.141251 ACCAGAAAATCCAGTACACAGGTT 60.141 41.667 0.00 0.00 0.00 3.50
2004 2007 4.827284 CCAGAAAATCCAGTACACAGGTTT 59.173 41.667 0.00 0.00 0.00 3.27
2005 2008 5.301805 CCAGAAAATCCAGTACACAGGTTTT 59.698 40.000 0.00 0.00 0.00 2.43
2006 2009 6.488683 CCAGAAAATCCAGTACACAGGTTTTA 59.511 38.462 0.00 0.00 0.00 1.52
2007 2010 7.308589 CCAGAAAATCCAGTACACAGGTTTTAG 60.309 40.741 0.00 0.00 0.00 1.85
2008 2011 7.444183 CAGAAAATCCAGTACACAGGTTTTAGA 59.556 37.037 0.00 0.00 0.00 2.10
2009 2012 7.661847 AGAAAATCCAGTACACAGGTTTTAGAG 59.338 37.037 0.00 0.00 0.00 2.43
2010 2013 4.267349 TCCAGTACACAGGTTTTAGAGC 57.733 45.455 0.00 0.00 0.00 4.09
2011 2014 3.007614 TCCAGTACACAGGTTTTAGAGCC 59.992 47.826 0.00 0.00 0.00 4.70
2012 2015 3.008049 CCAGTACACAGGTTTTAGAGCCT 59.992 47.826 0.00 0.00 36.87 4.58
2018 2021 0.621082 AGGTTTTAGAGCCTGGGAGC 59.379 55.000 0.00 0.00 34.85 4.70
2019 2022 0.328258 GGTTTTAGAGCCTGGGAGCA 59.672 55.000 0.00 0.00 34.23 4.26
2020 2023 1.064389 GGTTTTAGAGCCTGGGAGCAT 60.064 52.381 0.00 0.00 34.23 3.79
2021 2024 2.172717 GGTTTTAGAGCCTGGGAGCATA 59.827 50.000 0.00 0.00 34.23 3.14
2022 2025 3.181439 GGTTTTAGAGCCTGGGAGCATAT 60.181 47.826 0.00 0.00 34.23 1.78
2023 2026 3.777106 TTTAGAGCCTGGGAGCATATG 57.223 47.619 0.00 0.00 34.23 1.78
2024 2027 2.405618 TAGAGCCTGGGAGCATATGT 57.594 50.000 4.29 0.00 34.23 2.29
2025 2028 1.516110 AGAGCCTGGGAGCATATGTT 58.484 50.000 4.29 0.00 34.23 2.71
2026 2029 2.694397 AGAGCCTGGGAGCATATGTTA 58.306 47.619 4.29 0.00 34.23 2.41
2027 2030 3.048600 AGAGCCTGGGAGCATATGTTAA 58.951 45.455 4.29 0.00 34.23 2.01
2028 2031 3.072184 AGAGCCTGGGAGCATATGTTAAG 59.928 47.826 4.29 0.00 34.23 1.85
2029 2032 1.882623 GCCTGGGAGCATATGTTAAGC 59.117 52.381 4.29 0.00 0.00 3.09
2030 2033 2.749466 GCCTGGGAGCATATGTTAAGCA 60.749 50.000 4.29 0.00 0.00 3.91
2031 2034 3.759581 CCTGGGAGCATATGTTAAGCAT 58.240 45.455 4.29 0.00 41.42 3.79
2032 2035 3.504906 CCTGGGAGCATATGTTAAGCATG 59.495 47.826 4.29 0.00 38.47 4.06
2033 2036 4.139786 CTGGGAGCATATGTTAAGCATGT 58.860 43.478 4.29 0.00 38.47 3.21
2034 2037 4.535781 TGGGAGCATATGTTAAGCATGTT 58.464 39.130 4.29 0.00 38.47 2.71
2035 2038 4.580167 TGGGAGCATATGTTAAGCATGTTC 59.420 41.667 4.29 0.00 38.47 3.18
2036 2039 4.580167 GGGAGCATATGTTAAGCATGTTCA 59.420 41.667 4.29 0.00 38.47 3.18
2037 2040 5.278169 GGGAGCATATGTTAAGCATGTTCAG 60.278 44.000 4.29 0.00 38.47 3.02
2038 2041 5.528690 GGAGCATATGTTAAGCATGTTCAGA 59.471 40.000 4.29 0.00 38.47 3.27
2039 2042 6.293298 GGAGCATATGTTAAGCATGTTCAGAG 60.293 42.308 4.29 0.00 38.47 3.35
2040 2043 5.530171 AGCATATGTTAAGCATGTTCAGAGG 59.470 40.000 4.29 0.00 38.47 3.69
2041 2044 5.755813 CATATGTTAAGCATGTTCAGAGGC 58.244 41.667 0.00 0.00 38.47 4.70
2042 2045 2.436417 TGTTAAGCATGTTCAGAGGCC 58.564 47.619 0.00 0.00 0.00 5.19
2043 2046 2.224744 TGTTAAGCATGTTCAGAGGCCA 60.225 45.455 5.01 0.00 0.00 5.36
2044 2047 2.408271 TAAGCATGTTCAGAGGCCAG 57.592 50.000 5.01 0.00 0.00 4.85
2045 2048 0.694771 AAGCATGTTCAGAGGCCAGA 59.305 50.000 5.01 0.00 0.00 3.86
2046 2049 0.917533 AGCATGTTCAGAGGCCAGAT 59.082 50.000 5.01 0.00 0.00 2.90
2047 2050 1.284198 AGCATGTTCAGAGGCCAGATT 59.716 47.619 5.01 0.00 0.00 2.40
2048 2051 2.507058 AGCATGTTCAGAGGCCAGATTA 59.493 45.455 5.01 0.00 0.00 1.75
2049 2052 2.615912 GCATGTTCAGAGGCCAGATTAC 59.384 50.000 5.01 0.00 0.00 1.89
2050 2053 3.877559 CATGTTCAGAGGCCAGATTACA 58.122 45.455 5.01 3.78 0.00 2.41
2051 2054 3.334583 TGTTCAGAGGCCAGATTACAC 57.665 47.619 5.01 0.00 0.00 2.90
2052 2055 2.637382 TGTTCAGAGGCCAGATTACACA 59.363 45.455 5.01 0.00 0.00 3.72
2053 2056 3.072330 TGTTCAGAGGCCAGATTACACAA 59.928 43.478 5.01 0.00 0.00 3.33
2054 2057 4.072131 GTTCAGAGGCCAGATTACACAAA 58.928 43.478 5.01 0.00 0.00 2.83
2055 2058 4.365514 TCAGAGGCCAGATTACACAAAA 57.634 40.909 5.01 0.00 0.00 2.44
2056 2059 4.326826 TCAGAGGCCAGATTACACAAAAG 58.673 43.478 5.01 0.00 0.00 2.27
2057 2060 4.041567 TCAGAGGCCAGATTACACAAAAGA 59.958 41.667 5.01 0.00 0.00 2.52
2058 2061 4.761739 CAGAGGCCAGATTACACAAAAGAA 59.238 41.667 5.01 0.00 0.00 2.52
2059 2062 5.241506 CAGAGGCCAGATTACACAAAAGAAA 59.758 40.000 5.01 0.00 0.00 2.52
2060 2063 5.833131 AGAGGCCAGATTACACAAAAGAAAA 59.167 36.000 5.01 0.00 0.00 2.29
2061 2064 6.494835 AGAGGCCAGATTACACAAAAGAAAAT 59.505 34.615 5.01 0.00 0.00 1.82
2062 2065 7.669722 AGAGGCCAGATTACACAAAAGAAAATA 59.330 33.333 5.01 0.00 0.00 1.40
2063 2066 8.189119 AGGCCAGATTACACAAAAGAAAATAA 57.811 30.769 5.01 0.00 0.00 1.40
2064 2067 8.306761 AGGCCAGATTACACAAAAGAAAATAAG 58.693 33.333 5.01 0.00 0.00 1.73
2065 2068 8.088365 GGCCAGATTACACAAAAGAAAATAAGT 58.912 33.333 0.00 0.00 0.00 2.24
2066 2069 9.476202 GCCAGATTACACAAAAGAAAATAAGTT 57.524 29.630 0.00 0.00 0.00 2.66
2071 2074 9.893305 ATTACACAAAAGAAAATAAGTTCTCGG 57.107 29.630 0.00 0.00 36.84 4.63
2072 2075 7.562454 ACACAAAAGAAAATAAGTTCTCGGA 57.438 32.000 0.00 0.00 36.84 4.55
2073 2076 7.415229 ACACAAAAGAAAATAAGTTCTCGGAC 58.585 34.615 0.00 0.00 36.84 4.79
2074 2077 7.066525 ACACAAAAGAAAATAAGTTCTCGGACA 59.933 33.333 0.00 0.00 36.84 4.02
2075 2078 8.076178 CACAAAAGAAAATAAGTTCTCGGACAT 58.924 33.333 0.00 0.00 36.84 3.06
2076 2079 8.290325 ACAAAAGAAAATAAGTTCTCGGACATC 58.710 33.333 0.00 0.00 36.84 3.06
2077 2080 7.979444 AAAGAAAATAAGTTCTCGGACATCA 57.021 32.000 0.00 0.00 36.84 3.07
2078 2081 8.567285 AAAGAAAATAAGTTCTCGGACATCAT 57.433 30.769 0.00 0.00 36.84 2.45
2079 2082 9.667107 AAAGAAAATAAGTTCTCGGACATCATA 57.333 29.630 0.00 0.00 36.84 2.15
2080 2083 8.649973 AGAAAATAAGTTCTCGGACATCATAC 57.350 34.615 0.00 0.00 32.16 2.39
2081 2084 8.258007 AGAAAATAAGTTCTCGGACATCATACA 58.742 33.333 0.00 0.00 32.16 2.29
2082 2085 8.425577 AAAATAAGTTCTCGGACATCATACAG 57.574 34.615 0.00 0.00 0.00 2.74
2083 2086 6.961360 ATAAGTTCTCGGACATCATACAGA 57.039 37.500 0.00 0.00 0.00 3.41
2084 2087 5.661056 AAGTTCTCGGACATCATACAGAA 57.339 39.130 0.00 0.00 0.00 3.02
2085 2088 5.255710 AGTTCTCGGACATCATACAGAAG 57.744 43.478 0.00 0.00 0.00 2.85
2086 2089 4.098654 AGTTCTCGGACATCATACAGAAGG 59.901 45.833 0.00 0.00 0.00 3.46
2087 2090 2.959030 TCTCGGACATCATACAGAAGGG 59.041 50.000 0.00 0.00 0.00 3.95
2088 2091 2.959030 CTCGGACATCATACAGAAGGGA 59.041 50.000 0.00 0.00 0.00 4.20
2089 2092 2.959030 TCGGACATCATACAGAAGGGAG 59.041 50.000 0.00 0.00 0.00 4.30
2090 2093 2.695666 CGGACATCATACAGAAGGGAGT 59.304 50.000 0.00 0.00 0.00 3.85
2091 2094 3.889538 CGGACATCATACAGAAGGGAGTA 59.110 47.826 0.00 0.00 0.00 2.59
2092 2095 4.524714 CGGACATCATACAGAAGGGAGTAT 59.475 45.833 0.00 0.00 0.00 2.12
2138 2145 2.443387 CACATTTCATGGAATCGTGCG 58.557 47.619 13.11 0.00 33.60 5.34
2295 2302 4.226846 TCAGCATCAATCTTCTTCCTCCTT 59.773 41.667 0.00 0.00 0.00 3.36
2498 2506 0.690411 CCATCTCCTCCTCTGGTGCT 60.690 60.000 0.00 0.00 0.00 4.40
2663 2677 2.431057 GCCTCTCTCCTTTTCACGGATA 59.569 50.000 0.00 0.00 0.00 2.59
2665 2679 4.443598 GCCTCTCTCCTTTTCACGGATAAT 60.444 45.833 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.844090 GAGCTCTCTCGGGCCCAC 61.844 72.222 24.92 0.97 0.00 4.61
13 14 3.716585 GCCATTGCGAGCTCTCTC 58.283 61.111 12.85 1.33 35.99 3.20
31 32 1.215655 CCCGAATGTCGCCGAGAATC 61.216 60.000 0.00 0.00 38.82 2.52
32 33 1.227263 CCCGAATGTCGCCGAGAAT 60.227 57.895 0.00 0.00 38.82 2.40
33 34 1.672854 ATCCCGAATGTCGCCGAGAA 61.673 55.000 0.00 0.00 38.82 2.87
34 35 1.672854 AATCCCGAATGTCGCCGAGA 61.673 55.000 0.00 0.00 38.82 4.04
35 36 1.227263 AATCCCGAATGTCGCCGAG 60.227 57.895 0.00 0.00 38.82 4.63
36 37 1.520564 CAATCCCGAATGTCGCCGA 60.521 57.895 0.00 0.00 38.82 5.54
37 38 2.534019 CCAATCCCGAATGTCGCCG 61.534 63.158 0.00 0.00 38.82 6.46
38 39 1.436983 GACCAATCCCGAATGTCGCC 61.437 60.000 0.00 0.00 38.82 5.54
39 40 1.762222 CGACCAATCCCGAATGTCGC 61.762 60.000 0.00 0.00 41.71 5.19
40 41 2.297625 CGACCAATCCCGAATGTCG 58.702 57.895 0.00 0.00 42.13 4.35
41 42 1.571919 CTCGACCAATCCCGAATGTC 58.428 55.000 0.00 0.00 34.17 3.06
42 43 0.462047 GCTCGACCAATCCCGAATGT 60.462 55.000 0.00 0.00 34.17 2.71
43 44 1.490693 CGCTCGACCAATCCCGAATG 61.491 60.000 0.00 0.00 34.17 2.67
44 45 1.227263 CGCTCGACCAATCCCGAAT 60.227 57.895 0.00 0.00 34.17 3.34
45 46 2.183300 CGCTCGACCAATCCCGAA 59.817 61.111 0.00 0.00 34.17 4.30
46 47 4.508128 GCGCTCGACCAATCCCGA 62.508 66.667 0.00 0.00 0.00 5.14
47 48 3.133767 TAGCGCTCGACCAATCCCG 62.134 63.158 16.34 0.00 0.00 5.14
48 49 1.300233 CTAGCGCTCGACCAATCCC 60.300 63.158 16.34 0.00 0.00 3.85
49 50 1.300233 CCTAGCGCTCGACCAATCC 60.300 63.158 16.34 0.00 0.00 3.01
50 51 0.179108 AACCTAGCGCTCGACCAATC 60.179 55.000 16.34 0.00 0.00 2.67
51 52 0.249398 AAACCTAGCGCTCGACCAAT 59.751 50.000 16.34 0.00 0.00 3.16
52 53 0.669318 CAAACCTAGCGCTCGACCAA 60.669 55.000 16.34 0.00 0.00 3.67
53 54 1.080093 CAAACCTAGCGCTCGACCA 60.080 57.895 16.34 0.00 0.00 4.02
54 55 1.810030 CCAAACCTAGCGCTCGACC 60.810 63.158 16.34 0.00 0.00 4.79
55 56 1.080025 ACCAAACCTAGCGCTCGAC 60.080 57.895 16.34 0.00 0.00 4.20
56 57 1.080093 CACCAAACCTAGCGCTCGA 60.080 57.895 16.34 0.00 0.00 4.04
57 58 1.374252 ACACCAAACCTAGCGCTCG 60.374 57.895 16.34 7.87 0.00 5.03
58 59 1.298859 CCACACCAAACCTAGCGCTC 61.299 60.000 16.34 0.00 0.00 5.03
59 60 1.302511 CCACACCAAACCTAGCGCT 60.303 57.895 17.26 17.26 0.00 5.92
60 61 2.332654 CCCACACCAAACCTAGCGC 61.333 63.158 0.00 0.00 0.00 5.92
61 62 1.072505 ACCCACACCAAACCTAGCG 59.927 57.895 0.00 0.00 0.00 4.26
62 63 0.893727 CCACCCACACCAAACCTAGC 60.894 60.000 0.00 0.00 0.00 3.42
63 64 0.893727 GCCACCCACACCAAACCTAG 60.894 60.000 0.00 0.00 0.00 3.02
64 65 1.151908 GCCACCCACACCAAACCTA 59.848 57.895 0.00 0.00 0.00 3.08
65 66 2.123468 GCCACCCACACCAAACCT 60.123 61.111 0.00 0.00 0.00 3.50
66 67 2.360439 TAGGCCACCCACACCAAACC 62.360 60.000 5.01 0.00 0.00 3.27
67 68 0.893727 CTAGGCCACCCACACCAAAC 60.894 60.000 5.01 0.00 0.00 2.93
68 69 1.063070 TCTAGGCCACCCACACCAAA 61.063 55.000 5.01 0.00 0.00 3.28
69 70 1.462432 TCTAGGCCACCCACACCAA 60.462 57.895 5.01 0.00 0.00 3.67
70 71 2.205749 TCTAGGCCACCCACACCA 59.794 61.111 5.01 0.00 0.00 4.17
71 72 2.185310 CTGTCTAGGCCACCCACACC 62.185 65.000 5.01 0.00 0.00 4.16
72 73 1.192146 TCTGTCTAGGCCACCCACAC 61.192 60.000 5.01 0.00 0.00 3.82
73 74 0.252696 ATCTGTCTAGGCCACCCACA 60.253 55.000 5.01 0.56 0.00 4.17
74 75 0.912486 AATCTGTCTAGGCCACCCAC 59.088 55.000 5.01 0.00 0.00 4.61
75 76 1.204146 GAATCTGTCTAGGCCACCCA 58.796 55.000 5.01 0.00 0.00 4.51
76 77 0.105039 CGAATCTGTCTAGGCCACCC 59.895 60.000 5.01 0.00 0.00 4.61
77 78 0.824759 ACGAATCTGTCTAGGCCACC 59.175 55.000 5.01 0.00 0.00 4.61
78 79 1.476891 TCACGAATCTGTCTAGGCCAC 59.523 52.381 5.01 0.00 0.00 5.01
79 80 1.751351 CTCACGAATCTGTCTAGGCCA 59.249 52.381 5.01 0.00 0.00 5.36
80 81 1.067821 CCTCACGAATCTGTCTAGGCC 59.932 57.143 0.00 0.00 0.00 5.19
81 82 2.025155 TCCTCACGAATCTGTCTAGGC 58.975 52.381 0.00 0.00 0.00 3.93
82 83 3.283751 ACTCCTCACGAATCTGTCTAGG 58.716 50.000 0.00 0.00 0.00 3.02
83 84 4.974368 AACTCCTCACGAATCTGTCTAG 57.026 45.455 0.00 0.00 0.00 2.43
84 85 4.335874 GCTAACTCCTCACGAATCTGTCTA 59.664 45.833 0.00 0.00 0.00 2.59
85 86 3.129638 GCTAACTCCTCACGAATCTGTCT 59.870 47.826 0.00 0.00 0.00 3.41
86 87 3.129638 AGCTAACTCCTCACGAATCTGTC 59.870 47.826 0.00 0.00 0.00 3.51
87 88 3.093057 AGCTAACTCCTCACGAATCTGT 58.907 45.455 0.00 0.00 0.00 3.41
88 89 3.791973 AGCTAACTCCTCACGAATCTG 57.208 47.619 0.00 0.00 0.00 2.90
89 90 4.810191 AAAGCTAACTCCTCACGAATCT 57.190 40.909 0.00 0.00 0.00 2.40
90 91 4.093556 CCAAAAGCTAACTCCTCACGAATC 59.906 45.833 0.00 0.00 0.00 2.52
91 92 4.003648 CCAAAAGCTAACTCCTCACGAAT 58.996 43.478 0.00 0.00 0.00 3.34
92 93 3.181458 ACCAAAAGCTAACTCCTCACGAA 60.181 43.478 0.00 0.00 0.00 3.85
93 94 2.367567 ACCAAAAGCTAACTCCTCACGA 59.632 45.455 0.00 0.00 0.00 4.35
94 95 2.767505 ACCAAAAGCTAACTCCTCACG 58.232 47.619 0.00 0.00 0.00 4.35
95 96 5.515797 AAAACCAAAAGCTAACTCCTCAC 57.484 39.130 0.00 0.00 0.00 3.51
115 116 0.681564 AGCACACCCACACCGAAAAA 60.682 50.000 0.00 0.00 0.00 1.94
116 117 1.077357 AGCACACCCACACCGAAAA 60.077 52.632 0.00 0.00 0.00 2.29
117 118 1.821759 CAGCACACCCACACCGAAA 60.822 57.895 0.00 0.00 0.00 3.46
118 119 2.203139 CAGCACACCCACACCGAA 60.203 61.111 0.00 0.00 0.00 4.30
119 120 4.248842 CCAGCACACCCACACCGA 62.249 66.667 0.00 0.00 0.00 4.69
122 123 4.927782 TCGCCAGCACACCCACAC 62.928 66.667 0.00 0.00 0.00 3.82
123 124 4.927782 GTCGCCAGCACACCCACA 62.928 66.667 0.00 0.00 0.00 4.17
124 125 2.725203 TTAGTCGCCAGCACACCCAC 62.725 60.000 0.00 0.00 0.00 4.61
125 126 1.836999 ATTAGTCGCCAGCACACCCA 61.837 55.000 0.00 0.00 0.00 4.51
126 127 1.078426 ATTAGTCGCCAGCACACCC 60.078 57.895 0.00 0.00 0.00 4.61
127 128 0.673644 ACATTAGTCGCCAGCACACC 60.674 55.000 0.00 0.00 0.00 4.16
128 129 1.128692 GAACATTAGTCGCCAGCACAC 59.871 52.381 0.00 0.00 0.00 3.82
129 130 1.438651 GAACATTAGTCGCCAGCACA 58.561 50.000 0.00 0.00 0.00 4.57
130 131 0.370273 CGAACATTAGTCGCCAGCAC 59.630 55.000 0.00 0.00 0.00 4.40
131 132 1.358725 GCGAACATTAGTCGCCAGCA 61.359 55.000 7.54 0.00 45.77 4.41
132 133 1.348594 GCGAACATTAGTCGCCAGC 59.651 57.895 7.54 0.00 45.77 4.85
136 137 2.806288 ACAATGCGAACATTAGTCGC 57.194 45.000 11.61 11.61 44.83 5.19
137 138 3.181534 ACGAACAATGCGAACATTAGTCG 60.182 43.478 15.82 15.82 44.83 4.18
138 139 4.322101 ACGAACAATGCGAACATTAGTC 57.678 40.909 0.00 0.00 44.83 2.59
139 140 3.181534 CGACGAACAATGCGAACATTAGT 60.182 43.478 0.00 0.00 44.83 2.24
140 141 3.333723 CGACGAACAATGCGAACATTAG 58.666 45.455 0.00 0.00 44.83 1.73
141 142 2.092995 CCGACGAACAATGCGAACATTA 59.907 45.455 0.00 0.00 44.83 1.90
143 144 0.442310 CCGACGAACAATGCGAACAT 59.558 50.000 0.00 0.00 38.49 2.71
144 145 0.876777 ACCGACGAACAATGCGAACA 60.877 50.000 0.00 0.00 0.00 3.18
145 146 0.179258 GACCGACGAACAATGCGAAC 60.179 55.000 0.00 0.00 0.00 3.95
146 147 0.319211 AGACCGACGAACAATGCGAA 60.319 50.000 0.00 0.00 0.00 4.70
147 148 0.731514 GAGACCGACGAACAATGCGA 60.732 55.000 0.00 0.00 0.00 5.10
148 149 0.732880 AGAGACCGACGAACAATGCG 60.733 55.000 0.00 0.00 0.00 4.73
149 150 1.126846 CAAGAGACCGACGAACAATGC 59.873 52.381 0.00 0.00 0.00 3.56
150 151 2.404215 ACAAGAGACCGACGAACAATG 58.596 47.619 0.00 0.00 0.00 2.82
151 152 2.814280 ACAAGAGACCGACGAACAAT 57.186 45.000 0.00 0.00 0.00 2.71
152 153 3.713858 TTACAAGAGACCGACGAACAA 57.286 42.857 0.00 0.00 0.00 2.83
153 154 3.713858 TTTACAAGAGACCGACGAACA 57.286 42.857 0.00 0.00 0.00 3.18
154 155 5.397326 AGTATTTACAAGAGACCGACGAAC 58.603 41.667 0.00 0.00 0.00 3.95
155 156 5.633830 AGTATTTACAAGAGACCGACGAA 57.366 39.130 0.00 0.00 0.00 3.85
156 157 5.633830 AAGTATTTACAAGAGACCGACGA 57.366 39.130 0.00 0.00 0.00 4.20
157 158 5.444218 GCAAAGTATTTACAAGAGACCGACG 60.444 44.000 0.00 0.00 35.03 5.12
158 159 5.638234 AGCAAAGTATTTACAAGAGACCGAC 59.362 40.000 0.00 0.00 35.03 4.79
159 160 5.790593 AGCAAAGTATTTACAAGAGACCGA 58.209 37.500 0.00 0.00 35.03 4.69
160 161 6.402226 GGAAGCAAAGTATTTACAAGAGACCG 60.402 42.308 0.00 0.00 35.03 4.79
161 162 6.655425 AGGAAGCAAAGTATTTACAAGAGACC 59.345 38.462 0.00 0.00 35.03 3.85
162 163 7.674471 AGGAAGCAAAGTATTTACAAGAGAC 57.326 36.000 0.00 0.00 35.03 3.36
163 164 8.157476 AGAAGGAAGCAAAGTATTTACAAGAGA 58.843 33.333 0.00 0.00 35.03 3.10
164 165 8.329203 AGAAGGAAGCAAAGTATTTACAAGAG 57.671 34.615 0.00 0.00 35.03 2.85
165 166 9.959721 ATAGAAGGAAGCAAAGTATTTACAAGA 57.040 29.630 0.00 0.00 35.03 3.02
179 180 9.268268 CGTACCATATTTTTATAGAAGGAAGCA 57.732 33.333 0.00 0.00 0.00 3.91
180 181 8.228464 GCGTACCATATTTTTATAGAAGGAAGC 58.772 37.037 0.00 0.00 0.00 3.86
181 182 8.718734 GGCGTACCATATTTTTATAGAAGGAAG 58.281 37.037 0.00 0.00 35.26 3.46
182 183 8.212312 TGGCGTACCATATTTTTATAGAAGGAA 58.788 33.333 0.00 0.00 42.67 3.36
183 184 7.737869 TGGCGTACCATATTTTTATAGAAGGA 58.262 34.615 0.00 0.00 42.67 3.36
184 185 7.972832 TGGCGTACCATATTTTTATAGAAGG 57.027 36.000 0.00 0.00 42.67 3.46
205 206 0.459585 TTCGAGAGTACGCCAATGGC 60.460 55.000 15.52 15.52 46.75 4.40
206 207 2.004583 TTTCGAGAGTACGCCAATGG 57.995 50.000 0.00 0.00 0.00 3.16
226 227 1.966451 CGCTCAGGCCGTCCTTTTT 60.966 57.895 0.00 0.00 41.93 1.94
227 228 2.358737 CGCTCAGGCCGTCCTTTT 60.359 61.111 0.00 0.00 41.93 2.27
228 229 4.394712 CCGCTCAGGCCGTCCTTT 62.395 66.667 0.00 0.00 41.93 3.11
415 418 4.519437 CTCAGCCTCATCGCCGCA 62.519 66.667 0.00 0.00 0.00 5.69
434 437 3.681835 GCTGTCCCTCCACGTCGT 61.682 66.667 0.00 0.00 0.00 4.34
485 488 4.787280 CTCCTCCCCCTCCAGCGT 62.787 72.222 0.00 0.00 0.00 5.07
488 491 1.461075 CCATCTCCTCCCCCTCCAG 60.461 68.421 0.00 0.00 0.00 3.86
496 499 3.934962 GCCTCCGCCATCTCCTCC 61.935 72.222 0.00 0.00 0.00 4.30
497 500 4.292178 CGCCTCCGCCATCTCCTC 62.292 72.222 0.00 0.00 0.00 3.71
498 501 4.841617 TCGCCTCCGCCATCTCCT 62.842 66.667 0.00 0.00 0.00 3.69
499 502 4.292178 CTCGCCTCCGCCATCTCC 62.292 72.222 0.00 0.00 0.00 3.71
500 503 4.292178 CCTCGCCTCCGCCATCTC 62.292 72.222 0.00 0.00 0.00 2.75
518 521 3.793144 GACGAGCTTTGCCCTGCG 61.793 66.667 0.00 0.00 0.00 5.18
519 522 2.359230 AGACGAGCTTTGCCCTGC 60.359 61.111 0.00 0.00 0.00 4.85
520 523 2.684843 GCAGACGAGCTTTGCCCTG 61.685 63.158 0.00 0.00 31.79 4.45
521 524 2.359230 GCAGACGAGCTTTGCCCT 60.359 61.111 0.00 0.00 31.79 5.19
522 525 2.359230 AGCAGACGAGCTTTGCCC 60.359 61.111 9.05 0.00 43.70 5.36
523 526 2.684843 CCAGCAGACGAGCTTTGCC 61.685 63.158 9.05 0.00 43.70 4.52
524 527 2.684843 CCCAGCAGACGAGCTTTGC 61.685 63.158 0.00 0.00 43.70 3.68
525 528 2.684843 GCCCAGCAGACGAGCTTTG 61.685 63.158 0.00 0.00 43.70 2.77
526 529 2.359230 GCCCAGCAGACGAGCTTT 60.359 61.111 0.00 0.00 43.70 3.51
527 530 4.749310 CGCCCAGCAGACGAGCTT 62.749 66.667 0.00 0.00 43.70 3.74
542 545 4.899239 CATCAGGGTCTCCGCCGC 62.899 72.222 0.00 0.00 38.33 6.53
543 546 4.899239 GCATCAGGGTCTCCGCCG 62.899 72.222 0.00 0.00 38.33 6.46
544 547 3.474570 AGCATCAGGGTCTCCGCC 61.475 66.667 0.00 0.00 38.33 6.13
545 548 2.202987 CAGCATCAGGGTCTCCGC 60.203 66.667 0.00 0.00 38.33 5.54
546 549 1.142748 GACAGCATCAGGGTCTCCG 59.857 63.158 0.00 0.00 38.33 4.63
547 550 1.142748 CGACAGCATCAGGGTCTCC 59.857 63.158 0.00 0.00 0.00 3.71
548 551 1.142748 CCGACAGCATCAGGGTCTC 59.857 63.158 0.00 0.00 0.00 3.36
549 552 1.610673 ACCGACAGCATCAGGGTCT 60.611 57.895 0.00 0.00 0.00 3.85
550 553 1.448540 CACCGACAGCATCAGGGTC 60.449 63.158 0.00 0.00 0.00 4.46
551 554 2.665000 CACCGACAGCATCAGGGT 59.335 61.111 0.00 0.00 0.00 4.34
552 555 2.124983 CCACCGACAGCATCAGGG 60.125 66.667 0.00 0.00 0.00 4.45
553 556 1.448540 GACCACCGACAGCATCAGG 60.449 63.158 0.00 0.00 0.00 3.86
554 557 1.807165 CGACCACCGACAGCATCAG 60.807 63.158 0.00 0.00 41.76 2.90
555 558 2.261361 CGACCACCGACAGCATCA 59.739 61.111 0.00 0.00 41.76 3.07
556 559 3.188786 GCGACCACCGACAGCATC 61.189 66.667 0.00 0.00 41.76 3.91
574 577 4.517934 CCCCAGCCTCCAGCCATG 62.518 72.222 0.00 0.00 45.47 3.66
578 581 4.432741 GAACCCCCAGCCTCCAGC 62.433 72.222 0.00 0.00 44.25 4.85
579 582 3.732849 GGAACCCCCAGCCTCCAG 61.733 72.222 0.00 0.00 34.14 3.86
580 583 3.829311 AAGGAACCCCCAGCCTCCA 62.829 63.158 0.00 0.00 37.41 3.86
581 584 2.548547 AAAGGAACCCCCAGCCTCC 61.549 63.158 0.00 0.00 37.41 4.30
582 585 1.304464 CAAAGGAACCCCCAGCCTC 60.304 63.158 0.00 0.00 37.41 4.70
583 586 2.854076 CAAAGGAACCCCCAGCCT 59.146 61.111 0.00 0.00 37.41 4.58
584 587 2.283894 CCAAAGGAACCCCCAGCC 60.284 66.667 0.00 0.00 37.41 4.85
585 588 1.606601 GTCCAAAGGAACCCCCAGC 60.607 63.158 0.00 0.00 37.41 4.85
586 589 0.482887 AAGTCCAAAGGAACCCCCAG 59.517 55.000 0.00 0.00 37.41 4.45
587 590 0.481128 GAAGTCCAAAGGAACCCCCA 59.519 55.000 0.00 0.00 37.41 4.96
588 591 0.251653 GGAAGTCCAAAGGAACCCCC 60.252 60.000 0.00 0.00 31.38 5.40
589 592 0.481128 TGGAAGTCCAAAGGAACCCC 59.519 55.000 0.00 0.00 44.35 4.95
600 603 3.198635 TCTCCAGATCAACATGGAAGTCC 59.801 47.826 0.00 0.00 44.82 3.85
601 604 4.440880 CTCTCCAGATCAACATGGAAGTC 58.559 47.826 0.00 0.00 44.82 3.01
602 605 3.199508 CCTCTCCAGATCAACATGGAAGT 59.800 47.826 0.00 0.00 44.82 3.01
603 606 3.433314 CCCTCTCCAGATCAACATGGAAG 60.433 52.174 0.00 4.30 44.82 3.46
604 607 2.507058 CCCTCTCCAGATCAACATGGAA 59.493 50.000 0.00 0.00 44.82 3.53
605 608 2.121948 CCCTCTCCAGATCAACATGGA 58.878 52.381 0.00 0.00 43.34 3.41
606 609 2.121948 TCCCTCTCCAGATCAACATGG 58.878 52.381 0.00 0.00 37.97 3.66
607 610 3.920231 TTCCCTCTCCAGATCAACATG 57.080 47.619 0.00 0.00 0.00 3.21
608 611 3.784763 ACATTCCCTCTCCAGATCAACAT 59.215 43.478 0.00 0.00 0.00 2.71
609 612 3.184628 ACATTCCCTCTCCAGATCAACA 58.815 45.455 0.00 0.00 0.00 3.33
610 613 3.922171 ACATTCCCTCTCCAGATCAAC 57.078 47.619 0.00 0.00 0.00 3.18
611 614 5.907662 AGAATACATTCCCTCTCCAGATCAA 59.092 40.000 0.00 0.00 37.51 2.57
612 615 5.471424 AGAATACATTCCCTCTCCAGATCA 58.529 41.667 0.00 0.00 37.51 2.92
613 616 5.336372 CGAGAATACATTCCCTCTCCAGATC 60.336 48.000 0.00 0.00 37.51 2.75
614 617 4.526262 CGAGAATACATTCCCTCTCCAGAT 59.474 45.833 0.00 0.00 37.51 2.90
615 618 3.891977 CGAGAATACATTCCCTCTCCAGA 59.108 47.826 0.00 0.00 37.51 3.86
616 619 3.891977 TCGAGAATACATTCCCTCTCCAG 59.108 47.826 0.00 0.00 37.51 3.86
617 620 3.891977 CTCGAGAATACATTCCCTCTCCA 59.108 47.826 6.58 0.00 37.51 3.86
618 621 3.257127 CCTCGAGAATACATTCCCTCTCC 59.743 52.174 15.71 0.00 37.51 3.71
619 622 3.257127 CCCTCGAGAATACATTCCCTCTC 59.743 52.174 15.71 0.00 37.51 3.20
620 623 3.235200 CCCTCGAGAATACATTCCCTCT 58.765 50.000 15.71 0.00 37.51 3.69
621 624 2.300437 CCCCTCGAGAATACATTCCCTC 59.700 54.545 15.71 0.00 37.51 4.30
622 625 2.330216 CCCCTCGAGAATACATTCCCT 58.670 52.381 15.71 0.00 37.51 4.20
623 626 2.047830 ACCCCTCGAGAATACATTCCC 58.952 52.381 15.71 0.00 37.51 3.97
624 627 5.485209 AATACCCCTCGAGAATACATTCC 57.515 43.478 15.71 0.00 37.51 3.01
625 628 7.115947 CGTTAAATACCCCTCGAGAATACATTC 59.884 40.741 15.71 0.00 37.06 2.67
626 629 6.927381 CGTTAAATACCCCTCGAGAATACATT 59.073 38.462 15.71 4.94 0.00 2.71
627 630 6.266103 TCGTTAAATACCCCTCGAGAATACAT 59.734 38.462 15.71 0.00 0.00 2.29
628 631 5.593909 TCGTTAAATACCCCTCGAGAATACA 59.406 40.000 15.71 0.00 0.00 2.29
629 632 6.076981 TCGTTAAATACCCCTCGAGAATAC 57.923 41.667 15.71 0.00 0.00 1.89
630 633 5.278660 GCTCGTTAAATACCCCTCGAGAATA 60.279 44.000 15.71 3.28 44.58 1.75
631 634 4.501058 GCTCGTTAAATACCCCTCGAGAAT 60.501 45.833 15.71 0.76 44.58 2.40
632 635 3.181483 GCTCGTTAAATACCCCTCGAGAA 60.181 47.826 15.71 0.00 44.58 2.87
633 636 2.360165 GCTCGTTAAATACCCCTCGAGA 59.640 50.000 15.71 0.00 44.58 4.04
634 637 2.740452 GCTCGTTAAATACCCCTCGAG 58.260 52.381 5.13 5.13 44.60 4.04
635 638 1.066002 CGCTCGTTAAATACCCCTCGA 59.934 52.381 0.00 0.00 0.00 4.04
636 639 1.484356 CGCTCGTTAAATACCCCTCG 58.516 55.000 0.00 0.00 0.00 4.63
637 640 1.410153 TCCGCTCGTTAAATACCCCTC 59.590 52.381 0.00 0.00 0.00 4.30
638 641 1.411612 CTCCGCTCGTTAAATACCCCT 59.588 52.381 0.00 0.00 0.00 4.79
639 642 1.137675 ACTCCGCTCGTTAAATACCCC 59.862 52.381 0.00 0.00 0.00 4.95
640 643 2.199236 CACTCCGCTCGTTAAATACCC 58.801 52.381 0.00 0.00 0.00 3.69
641 644 2.199236 CCACTCCGCTCGTTAAATACC 58.801 52.381 0.00 0.00 0.00 2.73
642 645 2.159198 TCCCACTCCGCTCGTTAAATAC 60.159 50.000 0.00 0.00 0.00 1.89
643 646 2.100252 CTCCCACTCCGCTCGTTAAATA 59.900 50.000 0.00 0.00 0.00 1.40
644 647 0.899720 TCCCACTCCGCTCGTTAAAT 59.100 50.000 0.00 0.00 0.00 1.40
645 648 0.245539 CTCCCACTCCGCTCGTTAAA 59.754 55.000 0.00 0.00 0.00 1.52
646 649 0.609957 TCTCCCACTCCGCTCGTTAA 60.610 55.000 0.00 0.00 0.00 2.01
647 650 0.609957 TTCTCCCACTCCGCTCGTTA 60.610 55.000 0.00 0.00 0.00 3.18
648 651 1.878656 CTTCTCCCACTCCGCTCGTT 61.879 60.000 0.00 0.00 0.00 3.85
649 652 2.282958 TTCTCCCACTCCGCTCGT 60.283 61.111 0.00 0.00 0.00 4.18
650 653 1.595993 TTCTTCTCCCACTCCGCTCG 61.596 60.000 0.00 0.00 0.00 5.03
651 654 0.174617 CTTCTTCTCCCACTCCGCTC 59.825 60.000 0.00 0.00 0.00 5.03
652 655 1.893919 GCTTCTTCTCCCACTCCGCT 61.894 60.000 0.00 0.00 0.00 5.52
653 656 1.448717 GCTTCTTCTCCCACTCCGC 60.449 63.158 0.00 0.00 0.00 5.54
654 657 1.219393 GGCTTCTTCTCCCACTCCG 59.781 63.158 0.00 0.00 0.00 4.63
655 658 0.988063 AAGGCTTCTTCTCCCACTCC 59.012 55.000 0.00 0.00 0.00 3.85
656 659 2.431454 CAAAGGCTTCTTCTCCCACTC 58.569 52.381 0.00 0.00 0.00 3.51
657 660 1.546548 GCAAAGGCTTCTTCTCCCACT 60.547 52.381 0.00 0.00 36.96 4.00
658 661 0.884514 GCAAAGGCTTCTTCTCCCAC 59.115 55.000 0.00 0.00 36.96 4.61
659 662 0.478072 TGCAAAGGCTTCTTCTCCCA 59.522 50.000 0.00 0.00 41.91 4.37
660 663 1.475682 CATGCAAAGGCTTCTTCTCCC 59.524 52.381 0.00 0.00 41.91 4.30
661 664 1.475682 CCATGCAAAGGCTTCTTCTCC 59.524 52.381 0.00 0.00 41.91 3.71
662 665 2.422832 CTCCATGCAAAGGCTTCTTCTC 59.577 50.000 0.00 0.00 41.91 2.87
663 666 2.040813 TCTCCATGCAAAGGCTTCTTCT 59.959 45.455 0.00 0.00 41.91 2.85
664 667 2.440409 TCTCCATGCAAAGGCTTCTTC 58.560 47.619 0.00 0.00 41.91 2.87
665 668 2.592102 TCTCCATGCAAAGGCTTCTT 57.408 45.000 0.00 0.00 41.91 2.52
666 669 2.592102 TTCTCCATGCAAAGGCTTCT 57.408 45.000 0.00 0.00 41.91 2.85
667 670 3.446516 AGAATTCTCCATGCAAAGGCTTC 59.553 43.478 0.88 4.90 41.91 3.86
668 671 3.438183 AGAATTCTCCATGCAAAGGCTT 58.562 40.909 0.88 0.00 41.91 4.35
669 672 3.097342 AGAATTCTCCATGCAAAGGCT 57.903 42.857 0.88 0.00 41.91 4.58
670 673 4.641989 TCTTAGAATTCTCCATGCAAAGGC 59.358 41.667 12.24 0.00 41.68 4.35
698 701 3.463329 TCCCCTAAGCCATGAAGCTAAAT 59.537 43.478 0.00 0.00 44.11 1.40
709 712 0.645496 TACCTGGATCCCCTAAGCCA 59.355 55.000 9.90 0.00 0.00 4.75
1703 1706 6.569179 TCAAATACAAAAACAGACTAGCCC 57.431 37.500 0.00 0.00 0.00 5.19
1727 1730 2.611473 CGCGGCTCTTCATCTTCCATAT 60.611 50.000 0.00 0.00 0.00 1.78
1828 1831 1.891060 GCGCAAGACTCACACGAAGG 61.891 60.000 0.30 0.00 43.02 3.46
1831 1834 0.599991 ATTGCGCAAGACTCACACGA 60.600 50.000 28.62 0.00 43.02 4.35
1842 1845 0.804156 TCGCTGTCGATATTGCGCAA 60.804 50.000 27.24 27.24 46.73 4.85
1869 1872 1.623973 GCCGGACGTTTCTTTCTCCG 61.624 60.000 5.05 1.40 44.42 4.63
1877 1880 2.434359 CTGGAGGCCGGACGTTTC 60.434 66.667 5.05 0.00 29.82 2.78
1879 1882 2.920912 TTCTGGAGGCCGGACGTT 60.921 61.111 5.05 0.00 38.83 3.99
1895 1898 3.515316 CTCACACGCAGGGACGGTT 62.515 63.158 0.00 0.00 37.37 4.44
1929 1932 8.595421 GGTTTAACCCCCTTTCATACATAAAAA 58.405 33.333 2.04 0.00 30.04 1.94
1930 1933 8.136563 GGTTTAACCCCCTTTCATACATAAAA 57.863 34.615 2.04 0.00 30.04 1.52
1931 1934 7.721409 GGTTTAACCCCCTTTCATACATAAA 57.279 36.000 2.04 0.00 30.04 1.40
1955 1958 3.315880 TTTATAAAATGGGACCGGGGG 57.684 47.619 6.32 0.00 0.00 5.40
1956 1959 4.475345 TCATTTATAAAATGGGACCGGGG 58.525 43.478 6.32 0.00 0.00 5.73
1957 1960 6.277605 GTTTCATTTATAAAATGGGACCGGG 58.722 40.000 6.32 0.00 0.00 5.73
1958 1961 6.127310 TGGTTTCATTTATAAAATGGGACCGG 60.127 38.462 20.41 0.00 36.60 5.28
1959 1962 6.868622 TGGTTTCATTTATAAAATGGGACCG 58.131 36.000 20.41 0.00 36.60 4.79
1960 1963 8.073467 TCTGGTTTCATTTATAAAATGGGACC 57.927 34.615 19.75 19.75 35.51 4.46
1961 1964 9.936759 TTTCTGGTTTCATTTATAAAATGGGAC 57.063 29.630 11.37 9.98 0.00 4.46
1971 1974 9.308000 TGTACTGGATTTTCTGGTTTCATTTAT 57.692 29.630 0.00 0.00 0.00 1.40
1972 1975 8.573035 GTGTACTGGATTTTCTGGTTTCATTTA 58.427 33.333 0.00 0.00 0.00 1.40
1973 1976 7.069331 TGTGTACTGGATTTTCTGGTTTCATTT 59.931 33.333 0.00 0.00 0.00 2.32
1974 1977 6.549364 TGTGTACTGGATTTTCTGGTTTCATT 59.451 34.615 0.00 0.00 0.00 2.57
1975 1978 6.068010 TGTGTACTGGATTTTCTGGTTTCAT 58.932 36.000 0.00 0.00 0.00 2.57
1976 1979 5.441500 TGTGTACTGGATTTTCTGGTTTCA 58.558 37.500 0.00 0.00 0.00 2.69
1977 1980 5.048713 CCTGTGTACTGGATTTTCTGGTTTC 60.049 44.000 2.07 0.00 37.15 2.78
1978 1981 4.827284 CCTGTGTACTGGATTTTCTGGTTT 59.173 41.667 2.07 0.00 37.15 3.27
1979 1982 4.141251 ACCTGTGTACTGGATTTTCTGGTT 60.141 41.667 13.92 0.00 38.22 3.67
1980 1983 3.394606 ACCTGTGTACTGGATTTTCTGGT 59.605 43.478 13.92 0.00 38.22 4.00
1981 1984 4.021102 ACCTGTGTACTGGATTTTCTGG 57.979 45.455 13.92 0.00 38.22 3.86
1982 1985 6.391227 AAAACCTGTGTACTGGATTTTCTG 57.609 37.500 13.92 0.00 36.88 3.02
1983 1986 7.514721 TCTAAAACCTGTGTACTGGATTTTCT 58.485 34.615 16.90 1.94 39.42 2.52
1984 1987 7.573283 GCTCTAAAACCTGTGTACTGGATTTTC 60.573 40.741 16.90 5.81 39.42 2.29
1985 1988 6.206829 GCTCTAAAACCTGTGTACTGGATTTT 59.793 38.462 16.90 16.82 39.42 1.82
1986 1989 5.705905 GCTCTAAAACCTGTGTACTGGATTT 59.294 40.000 13.92 15.26 40.83 2.17
1987 1990 5.246307 GCTCTAAAACCTGTGTACTGGATT 58.754 41.667 13.92 6.33 38.22 3.01
1988 1991 4.323562 GGCTCTAAAACCTGTGTACTGGAT 60.324 45.833 13.92 0.28 38.22 3.41
1989 1992 3.007614 GGCTCTAAAACCTGTGTACTGGA 59.992 47.826 13.92 0.00 38.22 3.86
1990 1993 3.008049 AGGCTCTAAAACCTGTGTACTGG 59.992 47.826 6.41 6.41 40.37 4.00
1991 1994 3.997021 CAGGCTCTAAAACCTGTGTACTG 59.003 47.826 0.79 0.00 46.95 2.74
1992 1995 4.273148 CAGGCTCTAAAACCTGTGTACT 57.727 45.455 0.79 0.00 46.95 2.73
1999 2002 0.621082 GCTCCCAGGCTCTAAAACCT 59.379 55.000 0.00 0.00 36.45 3.50
2000 2003 0.328258 TGCTCCCAGGCTCTAAAACC 59.672 55.000 0.00 0.00 0.00 3.27
2001 2004 2.426842 ATGCTCCCAGGCTCTAAAAC 57.573 50.000 0.00 0.00 0.00 2.43
2002 2005 3.459598 ACATATGCTCCCAGGCTCTAAAA 59.540 43.478 1.58 0.00 0.00 1.52
2003 2006 3.048600 ACATATGCTCCCAGGCTCTAAA 58.951 45.455 1.58 0.00 0.00 1.85
2004 2007 2.694397 ACATATGCTCCCAGGCTCTAA 58.306 47.619 1.58 0.00 0.00 2.10
2005 2008 2.405618 ACATATGCTCCCAGGCTCTA 57.594 50.000 1.58 0.00 0.00 2.43
2006 2009 1.516110 AACATATGCTCCCAGGCTCT 58.484 50.000 1.58 0.00 0.00 4.09
2007 2010 3.406764 CTTAACATATGCTCCCAGGCTC 58.593 50.000 1.58 0.00 0.00 4.70
2008 2011 2.487986 GCTTAACATATGCTCCCAGGCT 60.488 50.000 1.58 0.00 0.00 4.58
2009 2012 1.882623 GCTTAACATATGCTCCCAGGC 59.117 52.381 1.58 0.00 0.00 4.85
2010 2013 3.213206 TGCTTAACATATGCTCCCAGG 57.787 47.619 1.58 0.00 0.00 4.45
2011 2014 4.139786 ACATGCTTAACATATGCTCCCAG 58.860 43.478 1.58 0.00 36.64 4.45
2012 2015 4.169059 ACATGCTTAACATATGCTCCCA 57.831 40.909 1.58 0.00 36.64 4.37
2013 2016 4.580167 TGAACATGCTTAACATATGCTCCC 59.420 41.667 1.58 0.00 36.64 4.30
2014 2017 5.528690 TCTGAACATGCTTAACATATGCTCC 59.471 40.000 1.58 0.00 36.64 4.70
2015 2018 6.293298 CCTCTGAACATGCTTAACATATGCTC 60.293 42.308 1.58 0.00 36.64 4.26
2016 2019 5.530171 CCTCTGAACATGCTTAACATATGCT 59.470 40.000 1.58 0.00 36.64 3.79
2017 2020 5.755813 CCTCTGAACATGCTTAACATATGC 58.244 41.667 1.58 0.00 36.64 3.14
2018 2021 5.278169 GGCCTCTGAACATGCTTAACATATG 60.278 44.000 0.00 0.00 36.64 1.78
2019 2022 4.823989 GGCCTCTGAACATGCTTAACATAT 59.176 41.667 0.00 0.00 36.64 1.78
2020 2023 4.199310 GGCCTCTGAACATGCTTAACATA 58.801 43.478 0.00 0.00 36.64 2.29
2021 2024 3.019564 GGCCTCTGAACATGCTTAACAT 58.980 45.455 0.00 0.00 40.66 2.71
2022 2025 2.224744 TGGCCTCTGAACATGCTTAACA 60.225 45.455 3.32 0.00 0.00 2.41
2023 2026 2.421424 CTGGCCTCTGAACATGCTTAAC 59.579 50.000 3.32 0.00 0.00 2.01
2024 2027 2.305635 TCTGGCCTCTGAACATGCTTAA 59.694 45.455 3.32 0.00 0.00 1.85
2025 2028 1.908619 TCTGGCCTCTGAACATGCTTA 59.091 47.619 3.32 0.00 0.00 3.09
2026 2029 0.694771 TCTGGCCTCTGAACATGCTT 59.305 50.000 3.32 0.00 0.00 3.91
2027 2030 0.917533 ATCTGGCCTCTGAACATGCT 59.082 50.000 3.32 0.00 0.00 3.79
2028 2031 1.760192 AATCTGGCCTCTGAACATGC 58.240 50.000 3.32 0.00 0.00 4.06
2029 2032 3.624861 GTGTAATCTGGCCTCTGAACATG 59.375 47.826 3.32 0.00 0.00 3.21
2030 2033 3.264193 TGTGTAATCTGGCCTCTGAACAT 59.736 43.478 3.32 0.00 0.00 2.71
2031 2034 2.637382 TGTGTAATCTGGCCTCTGAACA 59.363 45.455 3.32 0.00 0.00 3.18
2032 2035 3.334583 TGTGTAATCTGGCCTCTGAAC 57.665 47.619 3.32 0.00 0.00 3.18
2033 2036 4.365514 TTTGTGTAATCTGGCCTCTGAA 57.634 40.909 3.32 0.00 0.00 3.02
2034 2037 4.041567 TCTTTTGTGTAATCTGGCCTCTGA 59.958 41.667 3.32 0.00 0.00 3.27
2035 2038 4.326826 TCTTTTGTGTAATCTGGCCTCTG 58.673 43.478 3.32 0.00 0.00 3.35
2036 2039 4.640771 TCTTTTGTGTAATCTGGCCTCT 57.359 40.909 3.32 0.00 0.00 3.69
2037 2040 5.705609 TTTCTTTTGTGTAATCTGGCCTC 57.294 39.130 3.32 0.00 0.00 4.70
2038 2041 6.670695 ATTTTCTTTTGTGTAATCTGGCCT 57.329 33.333 3.32 0.00 0.00 5.19
2039 2042 8.088365 ACTTATTTTCTTTTGTGTAATCTGGCC 58.912 33.333 0.00 0.00 0.00 5.36
2040 2043 9.476202 AACTTATTTTCTTTTGTGTAATCTGGC 57.524 29.630 0.00 0.00 0.00 4.85
2045 2048 9.893305 CCGAGAACTTATTTTCTTTTGTGTAAT 57.107 29.630 0.00 0.00 35.90 1.89
2046 2049 9.111613 TCCGAGAACTTATTTTCTTTTGTGTAA 57.888 29.630 0.00 0.00 35.90 2.41
2047 2050 8.553696 GTCCGAGAACTTATTTTCTTTTGTGTA 58.446 33.333 0.00 0.00 35.90 2.90
2048 2051 7.066525 TGTCCGAGAACTTATTTTCTTTTGTGT 59.933 33.333 0.00 0.00 35.90 3.72
2049 2052 7.414436 TGTCCGAGAACTTATTTTCTTTTGTG 58.586 34.615 0.00 0.00 35.90 3.33
2050 2053 7.562454 TGTCCGAGAACTTATTTTCTTTTGT 57.438 32.000 0.00 0.00 35.90 2.83
2051 2054 8.289618 TGATGTCCGAGAACTTATTTTCTTTTG 58.710 33.333 0.00 0.00 35.90 2.44
2052 2055 8.391075 TGATGTCCGAGAACTTATTTTCTTTT 57.609 30.769 0.00 0.00 35.90 2.27
2053 2056 7.979444 TGATGTCCGAGAACTTATTTTCTTT 57.021 32.000 0.00 0.00 35.90 2.52
2054 2057 9.099454 GTATGATGTCCGAGAACTTATTTTCTT 57.901 33.333 0.00 0.00 35.90 2.52
2055 2058 8.258007 TGTATGATGTCCGAGAACTTATTTTCT 58.742 33.333 0.00 0.00 38.60 2.52
2056 2059 8.420374 TGTATGATGTCCGAGAACTTATTTTC 57.580 34.615 0.00 0.00 0.00 2.29
2057 2060 8.258007 TCTGTATGATGTCCGAGAACTTATTTT 58.742 33.333 0.00 0.00 0.00 1.82
2058 2061 7.782049 TCTGTATGATGTCCGAGAACTTATTT 58.218 34.615 0.00 0.00 0.00 1.40
2059 2062 7.348080 TCTGTATGATGTCCGAGAACTTATT 57.652 36.000 0.00 0.00 0.00 1.40
2060 2063 6.961360 TCTGTATGATGTCCGAGAACTTAT 57.039 37.500 0.00 0.00 0.00 1.73
2061 2064 6.183360 CCTTCTGTATGATGTCCGAGAACTTA 60.183 42.308 0.00 0.00 0.00 2.24
2062 2065 5.394663 CCTTCTGTATGATGTCCGAGAACTT 60.395 44.000 0.00 0.00 0.00 2.66
2063 2066 4.098654 CCTTCTGTATGATGTCCGAGAACT 59.901 45.833 0.00 0.00 0.00 3.01
2064 2067 4.363999 CCTTCTGTATGATGTCCGAGAAC 58.636 47.826 0.00 0.00 0.00 3.01
2065 2068 3.384789 CCCTTCTGTATGATGTCCGAGAA 59.615 47.826 0.00 0.00 0.00 2.87
2066 2069 2.959030 CCCTTCTGTATGATGTCCGAGA 59.041 50.000 0.00 0.00 0.00 4.04
2067 2070 2.959030 TCCCTTCTGTATGATGTCCGAG 59.041 50.000 0.00 0.00 0.00 4.63
2068 2071 2.959030 CTCCCTTCTGTATGATGTCCGA 59.041 50.000 0.00 0.00 0.00 4.55
2069 2072 2.695666 ACTCCCTTCTGTATGATGTCCG 59.304 50.000 0.00 0.00 0.00 4.79
2070 2073 5.540337 TGATACTCCCTTCTGTATGATGTCC 59.460 44.000 0.00 0.00 30.49 4.02
2071 2074 6.295011 CCTGATACTCCCTTCTGTATGATGTC 60.295 46.154 0.00 0.00 30.49 3.06
2072 2075 5.541868 CCTGATACTCCCTTCTGTATGATGT 59.458 44.000 0.00 0.00 30.49 3.06
2073 2076 5.046735 CCCTGATACTCCCTTCTGTATGATG 60.047 48.000 0.00 0.00 30.49 3.07
2074 2077 5.090139 CCCTGATACTCCCTTCTGTATGAT 58.910 45.833 0.00 0.00 30.49 2.45
2075 2078 4.170053 TCCCTGATACTCCCTTCTGTATGA 59.830 45.833 0.00 0.00 30.49 2.15
2076 2079 4.483950 TCCCTGATACTCCCTTCTGTATG 58.516 47.826 0.00 0.00 30.49 2.39
2077 2080 4.171044 ACTCCCTGATACTCCCTTCTGTAT 59.829 45.833 0.00 0.00 32.71 2.29
2078 2081 3.532232 ACTCCCTGATACTCCCTTCTGTA 59.468 47.826 0.00 0.00 0.00 2.74
2079 2082 2.316372 ACTCCCTGATACTCCCTTCTGT 59.684 50.000 0.00 0.00 0.00 3.41
2080 2083 3.039252 ACTCCCTGATACTCCCTTCTG 57.961 52.381 0.00 0.00 0.00 3.02
2081 2084 5.426325 AATACTCCCTGATACTCCCTTCT 57.574 43.478 0.00 0.00 0.00 2.85
2082 2085 7.070821 TGTTAAATACTCCCTGATACTCCCTTC 59.929 40.741 0.00 0.00 0.00 3.46
2083 2086 6.906901 TGTTAAATACTCCCTGATACTCCCTT 59.093 38.462 0.00 0.00 0.00 3.95
2084 2087 6.449956 TGTTAAATACTCCCTGATACTCCCT 58.550 40.000 0.00 0.00 0.00 4.20
2085 2088 6.742559 TGTTAAATACTCCCTGATACTCCC 57.257 41.667 0.00 0.00 0.00 4.30
2086 2089 9.457436 TTTTTGTTAAATACTCCCTGATACTCC 57.543 33.333 0.00 0.00 0.00 3.85
2138 2145 9.791820 ACAAATTTGTAAAGTGGTAGTTTGTAC 57.208 29.630 22.10 0.00 40.16 2.90
2295 2302 2.126882 CAGAGAGAGAGAGGGAGGAGA 58.873 57.143 0.00 0.00 0.00 3.71
2423 2431 2.659610 GTGAGCCTCAGCGACCTT 59.340 61.111 0.00 0.00 46.67 3.50
2435 2443 4.341783 AGCAGCCAGGTGGTGAGC 62.342 66.667 0.02 0.00 45.48 4.26



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.