Multiple sequence alignment - TraesCS4B01G321400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G321400 chr4B 100.000 2728 0 0 1 2728 612326007 612323280 0.000000e+00 5038.0
1 TraesCS4B01G321400 chr4B 96.154 78 3 0 2650 2727 2211306 2211229 7.930000e-26 128.0
2 TraesCS4B01G321400 chr4B 96.154 78 3 0 2650 2727 2241279 2241202 7.930000e-26 128.0
3 TraesCS4B01G321400 chr4B 98.077 52 1 0 1 52 612326909 612326960 1.040000e-14 91.6
4 TraesCS4B01G321400 chr4D 82.871 2020 95 106 269 2163 482722525 482720632 0.000000e+00 1581.0
5 TraesCS4B01G321400 chr4D 79.430 491 45 23 2205 2653 482720521 482720045 2.050000e-76 296.0
6 TraesCS4B01G321400 chr5A 83.232 1479 91 55 256 1679 659841455 659842831 0.000000e+00 1212.0
7 TraesCS4B01G321400 chr5A 87.500 272 15 10 1419 1679 20276752 20276489 2.050000e-76 296.0
8 TraesCS4B01G321400 chr5A 83.333 264 17 11 1699 1947 659842891 659843142 4.570000e-53 219.0
9 TraesCS4B01G321400 chr5A 98.077 52 1 0 1 52 239403014 239402963 1.040000e-14 91.6
10 TraesCS4B01G321400 chr7A 87.165 522 50 11 1165 1679 159038071 159037560 6.550000e-161 577.0
11 TraesCS4B01G321400 chr7A 88.722 266 19 8 1421 1679 40977908 40978169 5.670000e-82 315.0
12 TraesCS4B01G321400 chr7A 89.637 193 11 2 598 790 159038285 159038102 1.260000e-58 237.0
13 TraesCS4B01G321400 chr3A 86.973 522 48 10 1165 1679 103440332 103439824 1.100000e-158 569.0
14 TraesCS4B01G321400 chr3A 88.593 263 19 8 1419 1674 95262315 95262573 2.640000e-80 309.0
15 TraesCS4B01G321400 chr3A 88.601 193 13 3 598 790 103440546 103440363 2.730000e-55 226.0
16 TraesCS4B01G321400 chr3A 96.203 79 3 0 2649 2727 111821443 111821365 2.200000e-26 130.0
17 TraesCS4B01G321400 chr2A 86.756 521 45 13 1165 1674 290016420 290016927 2.370000e-155 558.0
18 TraesCS4B01G321400 chr2A 85.663 279 31 3 1165 1443 695828415 695828146 4.450000e-73 285.0
19 TraesCS4B01G321400 chr2A 89.637 193 11 2 598 790 695828629 695828446 1.260000e-58 237.0
20 TraesCS4B01G321400 chr2A 88.083 193 14 2 598 790 290016206 290016389 1.270000e-53 220.0
21 TraesCS4B01G321400 chr2A 100.000 52 0 0 1 52 735970475 735970526 2.240000e-16 97.1
22 TraesCS4B01G321400 chr2A 87.013 77 9 1 146 221 410237664 410237588 4.840000e-13 86.1
23 TraesCS4B01G321400 chr2A 100.000 31 0 0 810 840 290016391 290016421 1.060000e-04 58.4
24 TraesCS4B01G321400 chr4A 86.693 511 46 13 1177 1679 416467243 416466747 5.140000e-152 547.0
25 TraesCS4B01G321400 chr4A 88.806 134 14 1 598 731 416471818 416471686 2.170000e-36 163.0
26 TraesCS4B01G321400 chr4A 92.453 53 1 1 738 790 416467335 416467286 3.770000e-09 73.1
27 TraesCS4B01G321400 chr7D 96.203 79 3 0 2649 2727 35493187 35493109 2.200000e-26 130.0
28 TraesCS4B01G321400 chr7D 91.860 86 7 0 2642 2727 231491388 231491303 1.330000e-23 121.0
29 TraesCS4B01G321400 chr7D 90.244 82 6 2 142 222 193154817 193154737 3.720000e-19 106.0
30 TraesCS4B01G321400 chr1B 96.203 79 3 0 2649 2727 333785209 333785287 2.200000e-26 130.0
31 TraesCS4B01G321400 chr6A 94.937 79 4 0 2649 2727 371066034 371066112 1.030000e-24 124.0
32 TraesCS4B01G321400 chr3B 90.323 93 7 2 2635 2727 674052934 674052844 1.330000e-23 121.0
33 TraesCS4B01G321400 chr3B 98.077 52 1 0 1 52 457159047 457159098 1.040000e-14 91.6
34 TraesCS4B01G321400 chr1D 91.860 86 7 0 2642 2727 392090049 392089964 1.330000e-23 121.0
35 TraesCS4B01G321400 chr1D 96.154 52 2 0 1 52 127840352 127840403 4.840000e-13 86.1
36 TraesCS4B01G321400 chr1D 92.453 53 3 1 166 217 74823174 74823122 1.050000e-09 75.0
37 TraesCS4B01G321400 chr7B 100.000 53 0 0 1 53 15931096 15931044 6.220000e-17 99.0
38 TraesCS4B01G321400 chr7B 87.013 77 9 1 146 221 50002782 50002706 4.840000e-13 86.1
39 TraesCS4B01G321400 chr2B 98.113 53 1 0 1 53 784740694 784740746 2.890000e-15 93.5
40 TraesCS4B01G321400 chr5B 96.154 52 2 0 1 52 61361588 61361537 4.840000e-13 86.1
41 TraesCS4B01G321400 chr1A 96.154 52 2 0 1 52 367028111 367028060 4.840000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G321400 chr4B 612323280 612326007 2727 True 5038.00 5038 100.0000 1 2728 1 chr4B.!!$R3 2727
1 TraesCS4B01G321400 chr4D 482720045 482722525 2480 True 938.50 1581 81.1505 269 2653 2 chr4D.!!$R1 2384
2 TraesCS4B01G321400 chr5A 659841455 659843142 1687 False 715.50 1212 83.2825 256 1947 2 chr5A.!!$F1 1691
3 TraesCS4B01G321400 chr7A 159037560 159038285 725 True 407.00 577 88.4010 598 1679 2 chr7A.!!$R1 1081
4 TraesCS4B01G321400 chr3A 103439824 103440546 722 True 397.50 569 87.7870 598 1679 2 chr3A.!!$R2 1081
5 TraesCS4B01G321400 chr2A 290016206 290016927 721 False 278.80 558 91.6130 598 1674 3 chr2A.!!$F2 1076
6 TraesCS4B01G321400 chr4A 416466747 416467335 588 True 310.05 547 89.5730 738 1679 2 chr4A.!!$R2 941

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
194 195 0.034337 AAAAGTGCCATGCAAGCAGG 59.966 50.0 14.48 0.0 41.47 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1790 1957 0.321346 GAACCCCCGGAGAAACGTAA 59.679 55.0 0.73 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.663043 AGGCCGATTGGGTAATATTTTTAAA 57.337 32.000 0.00 0.00 38.44 1.52
26 27 8.080363 AGGCCGATTGGGTAATATTTTTAAAA 57.920 30.769 0.00 0.00 38.44 1.52
27 28 8.541234 AGGCCGATTGGGTAATATTTTTAAAAA 58.459 29.630 15.38 15.38 38.44 1.94
57 58 6.721571 TTACGGCATAATATTTCTAGCTGC 57.278 37.500 0.00 0.00 31.82 5.25
58 59 4.899502 ACGGCATAATATTTCTAGCTGCT 58.100 39.130 7.57 7.57 31.82 4.24
59 60 4.692625 ACGGCATAATATTTCTAGCTGCTG 59.307 41.667 13.43 2.51 39.72 4.41
60 61 4.436584 CGGCATAATATTTCTAGCTGCTGC 60.437 45.833 13.43 7.62 40.05 5.25
61 62 4.142513 GGCATAATATTTCTAGCTGCTGCC 60.143 45.833 13.43 8.86 40.80 4.85
62 63 4.456911 GCATAATATTTCTAGCTGCTGCCA 59.543 41.667 13.43 0.00 40.80 4.92
63 64 5.125097 GCATAATATTTCTAGCTGCTGCCAT 59.875 40.000 13.43 1.77 40.80 4.40
64 65 6.552629 CATAATATTTCTAGCTGCTGCCATG 58.447 40.000 13.43 3.02 40.80 3.66
65 66 2.431954 ATTTCTAGCTGCTGCCATGT 57.568 45.000 13.43 0.00 40.80 3.21
66 67 1.742761 TTTCTAGCTGCTGCCATGTC 58.257 50.000 13.43 0.00 40.80 3.06
67 68 0.614812 TTCTAGCTGCTGCCATGTCA 59.385 50.000 13.43 0.00 40.80 3.58
68 69 0.835276 TCTAGCTGCTGCCATGTCAT 59.165 50.000 13.43 0.00 40.80 3.06
69 70 1.202615 TCTAGCTGCTGCCATGTCATC 60.203 52.381 13.43 0.00 40.80 2.92
70 71 0.542805 TAGCTGCTGCCATGTCATCA 59.457 50.000 13.43 0.00 40.80 3.07
71 72 0.323087 AGCTGCTGCCATGTCATCAA 60.323 50.000 12.44 0.00 40.80 2.57
72 73 0.100682 GCTGCTGCCATGTCATCAAG 59.899 55.000 3.85 0.00 0.00 3.02
73 74 1.746470 CTGCTGCCATGTCATCAAGA 58.254 50.000 0.00 0.00 0.00 3.02
74 75 1.671328 CTGCTGCCATGTCATCAAGAG 59.329 52.381 0.00 0.00 0.00 2.85
75 76 1.003928 TGCTGCCATGTCATCAAGAGT 59.996 47.619 0.00 0.00 0.00 3.24
76 77 2.089980 GCTGCCATGTCATCAAGAGTT 58.910 47.619 0.00 0.00 0.00 3.01
77 78 3.273434 GCTGCCATGTCATCAAGAGTTA 58.727 45.455 0.00 0.00 0.00 2.24
78 79 3.311871 GCTGCCATGTCATCAAGAGTTAG 59.688 47.826 0.00 0.00 0.00 2.34
79 80 4.511527 CTGCCATGTCATCAAGAGTTAGT 58.488 43.478 0.00 0.00 0.00 2.24
80 81 5.664457 CTGCCATGTCATCAAGAGTTAGTA 58.336 41.667 0.00 0.00 0.00 1.82
81 82 6.239217 TGCCATGTCATCAAGAGTTAGTAT 57.761 37.500 0.00 0.00 0.00 2.12
82 83 7.360113 TGCCATGTCATCAAGAGTTAGTATA 57.640 36.000 0.00 0.00 0.00 1.47
83 84 7.791029 TGCCATGTCATCAAGAGTTAGTATAA 58.209 34.615 0.00 0.00 0.00 0.98
84 85 7.928167 TGCCATGTCATCAAGAGTTAGTATAAG 59.072 37.037 0.00 0.00 0.00 1.73
85 86 7.386299 GCCATGTCATCAAGAGTTAGTATAAGG 59.614 40.741 0.00 0.00 0.00 2.69
86 87 8.424918 CCATGTCATCAAGAGTTAGTATAAGGT 58.575 37.037 0.00 0.00 0.00 3.50
87 88 9.823647 CATGTCATCAAGAGTTAGTATAAGGTT 57.176 33.333 0.00 0.00 0.00 3.50
107 108 6.694877 GGTTACAACCTTTTCTCACTTTCT 57.305 37.500 3.80 0.00 45.75 2.52
108 109 6.726230 GGTTACAACCTTTTCTCACTTTCTC 58.274 40.000 3.80 0.00 45.75 2.87
109 110 6.542735 GGTTACAACCTTTTCTCACTTTCTCT 59.457 38.462 3.80 0.00 45.75 3.10
110 111 7.254829 GGTTACAACCTTTTCTCACTTTCTCTC 60.255 40.741 3.80 0.00 45.75 3.20
111 112 5.745227 ACAACCTTTTCTCACTTTCTCTCA 58.255 37.500 0.00 0.00 0.00 3.27
112 113 6.180472 ACAACCTTTTCTCACTTTCTCTCAA 58.820 36.000 0.00 0.00 0.00 3.02
113 114 6.830838 ACAACCTTTTCTCACTTTCTCTCAAT 59.169 34.615 0.00 0.00 0.00 2.57
114 115 7.012799 ACAACCTTTTCTCACTTTCTCTCAATC 59.987 37.037 0.00 0.00 0.00 2.67
115 116 6.836242 ACCTTTTCTCACTTTCTCTCAATCT 58.164 36.000 0.00 0.00 0.00 2.40
116 117 6.934083 ACCTTTTCTCACTTTCTCTCAATCTC 59.066 38.462 0.00 0.00 0.00 2.75
117 118 7.160726 CCTTTTCTCACTTTCTCTCAATCTCT 58.839 38.462 0.00 0.00 0.00 3.10
118 119 7.331687 CCTTTTCTCACTTTCTCTCAATCTCTC 59.668 40.741 0.00 0.00 0.00 3.20
119 120 7.537596 TTTCTCACTTTCTCTCAATCTCTCT 57.462 36.000 0.00 0.00 0.00 3.10
120 121 6.757897 TCTCACTTTCTCTCAATCTCTCTC 57.242 41.667 0.00 0.00 0.00 3.20
121 122 5.652014 TCTCACTTTCTCTCAATCTCTCTCC 59.348 44.000 0.00 0.00 0.00 3.71
122 123 5.579047 TCACTTTCTCTCAATCTCTCTCCT 58.421 41.667 0.00 0.00 0.00 3.69
123 124 5.652014 TCACTTTCTCTCAATCTCTCTCCTC 59.348 44.000 0.00 0.00 0.00 3.71
124 125 5.418524 CACTTTCTCTCAATCTCTCTCCTCA 59.581 44.000 0.00 0.00 0.00 3.86
125 126 5.418840 ACTTTCTCTCAATCTCTCTCCTCAC 59.581 44.000 0.00 0.00 0.00 3.51
126 127 4.582973 TCTCTCAATCTCTCTCCTCACA 57.417 45.455 0.00 0.00 0.00 3.58
127 128 5.128033 TCTCTCAATCTCTCTCCTCACAT 57.872 43.478 0.00 0.00 0.00 3.21
128 129 5.517924 TCTCTCAATCTCTCTCCTCACATT 58.482 41.667 0.00 0.00 0.00 2.71
129 130 6.667661 TCTCTCAATCTCTCTCCTCACATTA 58.332 40.000 0.00 0.00 0.00 1.90
130 131 7.122048 TCTCTCAATCTCTCTCCTCACATTAA 58.878 38.462 0.00 0.00 0.00 1.40
131 132 7.617329 TCTCTCAATCTCTCTCCTCACATTAAA 59.383 37.037 0.00 0.00 0.00 1.52
132 133 8.316497 TCTCAATCTCTCTCCTCACATTAAAT 57.684 34.615 0.00 0.00 0.00 1.40
133 134 8.202811 TCTCAATCTCTCTCCTCACATTAAATG 58.797 37.037 0.00 0.00 0.00 2.32
134 135 7.855375 TCAATCTCTCTCCTCACATTAAATGT 58.145 34.615 0.00 0.00 46.22 2.71
135 136 8.324306 TCAATCTCTCTCCTCACATTAAATGTT 58.676 33.333 0.00 0.00 42.70 2.71
136 137 8.954350 CAATCTCTCTCCTCACATTAAATGTTT 58.046 33.333 0.00 0.00 42.70 2.83
137 138 9.525826 AATCTCTCTCCTCACATTAAATGTTTT 57.474 29.630 0.00 0.00 42.70 2.43
138 139 8.553459 TCTCTCTCCTCACATTAAATGTTTTC 57.447 34.615 0.00 0.00 42.70 2.29
139 140 8.378565 TCTCTCTCCTCACATTAAATGTTTTCT 58.621 33.333 0.00 0.00 42.70 2.52
140 141 8.924511 TCTCTCCTCACATTAAATGTTTTCTT 57.075 30.769 0.00 0.00 42.70 2.52
141 142 9.354673 TCTCTCCTCACATTAAATGTTTTCTTT 57.645 29.630 0.00 0.00 42.70 2.52
142 143 9.971922 CTCTCCTCACATTAAATGTTTTCTTTT 57.028 29.630 0.00 0.00 42.70 2.27
145 146 9.974980 TCCTCACATTAAATGTTTTCTTTTACC 57.025 29.630 0.00 0.00 42.70 2.85
146 147 9.981114 CCTCACATTAAATGTTTTCTTTTACCT 57.019 29.630 0.00 0.00 42.70 3.08
166 167 6.641169 ACCTTTTTCATGTTTCTCTTCTCC 57.359 37.500 0.00 0.00 0.00 3.71
167 168 6.129179 ACCTTTTTCATGTTTCTCTTCTCCA 58.871 36.000 0.00 0.00 0.00 3.86
168 169 6.039829 ACCTTTTTCATGTTTCTCTTCTCCAC 59.960 38.462 0.00 0.00 0.00 4.02
169 170 6.039717 CCTTTTTCATGTTTCTCTTCTCCACA 59.960 38.462 0.00 0.00 0.00 4.17
170 171 7.255730 CCTTTTTCATGTTTCTCTTCTCCACAT 60.256 37.037 0.00 0.00 0.00 3.21
171 172 8.690203 TTTTTCATGTTTCTCTTCTCCACATA 57.310 30.769 0.00 0.00 0.00 2.29
172 173 7.912056 TTTCATGTTTCTCTTCTCCACATAG 57.088 36.000 0.00 0.00 0.00 2.23
173 174 5.982356 TCATGTTTCTCTTCTCCACATAGG 58.018 41.667 0.00 0.00 39.47 2.57
174 175 4.207891 TGTTTCTCTTCTCCACATAGGC 57.792 45.455 0.00 0.00 37.29 3.93
175 176 3.582647 TGTTTCTCTTCTCCACATAGGCA 59.417 43.478 0.00 0.00 37.29 4.75
176 177 4.041567 TGTTTCTCTTCTCCACATAGGCAA 59.958 41.667 0.00 0.00 37.29 4.52
177 178 4.908601 TTCTCTTCTCCACATAGGCAAA 57.091 40.909 0.00 0.00 37.29 3.68
178 179 4.908601 TCTCTTCTCCACATAGGCAAAA 57.091 40.909 0.00 0.00 37.29 2.44
179 180 4.836825 TCTCTTCTCCACATAGGCAAAAG 58.163 43.478 0.00 0.00 37.29 2.27
180 181 4.287067 TCTCTTCTCCACATAGGCAAAAGT 59.713 41.667 0.00 0.00 37.29 2.66
181 182 4.326826 TCTTCTCCACATAGGCAAAAGTG 58.673 43.478 0.00 0.00 37.29 3.16
191 192 1.864176 GCAAAAGTGCCATGCAAGC 59.136 52.632 5.18 5.18 45.68 4.01
192 193 0.881159 GCAAAAGTGCCATGCAAGCA 60.881 50.000 10.48 10.48 45.68 3.91
193 194 1.144969 CAAAAGTGCCATGCAAGCAG 58.855 50.000 14.48 0.15 41.47 4.24
194 195 0.034337 AAAAGTGCCATGCAAGCAGG 59.966 50.000 14.48 0.00 41.47 4.85
198 199 3.607163 GCCATGCAAGCAGGCTTA 58.393 55.556 20.70 0.00 44.92 3.09
199 200 2.121645 GCCATGCAAGCAGGCTTAT 58.878 52.632 20.70 0.00 44.92 1.73
200 201 1.321474 GCCATGCAAGCAGGCTTATA 58.679 50.000 20.70 0.00 44.92 0.98
201 202 1.268899 GCCATGCAAGCAGGCTTATAG 59.731 52.381 20.70 0.00 44.92 1.31
202 203 1.268899 CCATGCAAGCAGGCTTATAGC 59.731 52.381 6.16 7.01 41.46 2.97
218 219 7.583860 GCTTATAGCCTACTATTGTACTTGC 57.416 40.000 0.00 0.00 39.81 4.01
219 220 7.379750 GCTTATAGCCTACTATTGTACTTGCT 58.620 38.462 0.00 0.00 39.81 3.91
220 221 7.542824 GCTTATAGCCTACTATTGTACTTGCTC 59.457 40.741 0.00 0.00 39.81 4.26
221 222 8.707796 TTATAGCCTACTATTGTACTTGCTCT 57.292 34.615 0.00 0.85 39.81 4.09
222 223 5.523438 AGCCTACTATTGTACTTGCTCTC 57.477 43.478 0.00 0.00 0.00 3.20
223 224 4.956700 AGCCTACTATTGTACTTGCTCTCA 59.043 41.667 0.00 0.00 0.00 3.27
224 225 5.600484 AGCCTACTATTGTACTTGCTCTCAT 59.400 40.000 0.00 0.00 0.00 2.90
225 226 5.694006 GCCTACTATTGTACTTGCTCTCATG 59.306 44.000 0.00 0.00 0.00 3.07
226 227 6.219473 CCTACTATTGTACTTGCTCTCATGG 58.781 44.000 0.00 0.00 0.00 3.66
227 228 4.446371 ACTATTGTACTTGCTCTCATGGC 58.554 43.478 0.00 0.00 0.00 4.40
228 229 2.857186 TTGTACTTGCTCTCATGGCA 57.143 45.000 0.00 0.00 37.97 4.92
229 230 2.857186 TGTACTTGCTCTCATGGCAA 57.143 45.000 7.50 7.50 45.70 4.52
232 233 3.582148 TTGCTCTCATGGCAAGCG 58.418 55.556 4.02 0.00 43.50 4.68
233 234 2.042259 TTGCTCTCATGGCAAGCGG 61.042 57.895 4.02 0.00 43.50 5.52
234 235 3.885521 GCTCTCATGGCAAGCGGC 61.886 66.667 0.00 0.00 43.74 6.53
243 244 3.595758 GCAAGCGGCCACTGTGTT 61.596 61.111 2.24 0.00 36.11 3.32
244 245 2.332514 CAAGCGGCCACTGTGTTG 59.667 61.111 2.24 0.56 0.00 3.33
245 246 2.906897 AAGCGGCCACTGTGTTGG 60.907 61.111 2.24 0.00 39.98 3.77
251 252 2.652530 CCACTGTGTTGGCATGCC 59.347 61.111 30.54 30.54 0.00 4.40
252 253 1.904865 CCACTGTGTTGGCATGCCT 60.905 57.895 35.53 12.62 36.94 4.75
253 254 0.608856 CCACTGTGTTGGCATGCCTA 60.609 55.000 35.53 27.11 36.94 3.93
254 255 1.246649 CACTGTGTTGGCATGCCTAA 58.753 50.000 35.53 24.43 36.94 2.69
294 295 0.951040 GGAGTGAAGTTGGGCACGAG 60.951 60.000 0.00 0.00 39.88 4.18
308 309 2.590575 CGAGCCAAACACACCCGT 60.591 61.111 0.00 0.00 0.00 5.28
334 344 3.119065 TGTGACGTCTTTGTACCAGAACA 60.119 43.478 17.92 4.99 0.00 3.18
335 345 3.489785 GTGACGTCTTTGTACCAGAACAG 59.510 47.826 17.92 0.00 0.00 3.16
336 346 3.382227 TGACGTCTTTGTACCAGAACAGA 59.618 43.478 17.92 0.00 0.00 3.41
337 347 4.142116 TGACGTCTTTGTACCAGAACAGAA 60.142 41.667 17.92 0.00 0.00 3.02
338 348 4.369182 ACGTCTTTGTACCAGAACAGAAG 58.631 43.478 0.00 0.00 0.00 2.85
344 354 4.114015 TGTACCAGAACAGAAGAGAGGA 57.886 45.455 0.00 0.00 0.00 3.71
360 370 1.929836 GAGGACACACTCGATCATTGC 59.070 52.381 0.00 0.00 0.00 3.56
367 377 0.391661 ACTCGATCATTGCGTTGGCT 60.392 50.000 0.00 0.00 40.82 4.75
381 411 2.162809 CGTTGGCTGTGTTTATTACCCC 59.837 50.000 0.00 0.00 0.00 4.95
383 413 1.340211 TGGCTGTGTTTATTACCCCCG 60.340 52.381 0.00 0.00 0.00 5.73
399 429 0.459585 CCCGACGATGTGTACTTGGG 60.460 60.000 0.00 0.00 0.00 4.12
450 481 2.243957 TTGCACGACGGAGCAAGTG 61.244 57.895 21.06 1.00 43.35 3.16
520 561 4.092821 TGCGTCAGTGCTGTCATTTATTAC 59.907 41.667 0.00 0.00 35.36 1.89
525 566 1.329292 TGCTGTCATTTATTACGCCGC 59.671 47.619 0.00 0.00 0.00 6.53
526 567 1.333791 GCTGTCATTTATTACGCCGCC 60.334 52.381 0.00 0.00 0.00 6.13
527 568 0.931702 TGTCATTTATTACGCCGCCG 59.068 50.000 0.00 0.00 41.14 6.46
529 570 1.071041 GTCATTTATTACGCCGCCGTC 60.071 52.381 0.00 0.00 46.39 4.79
530 571 0.111442 CATTTATTACGCCGCCGTCG 60.111 55.000 0.00 0.00 46.39 5.12
531 572 0.528249 ATTTATTACGCCGCCGTCGT 60.528 50.000 0.00 0.00 46.39 4.34
532 573 1.139226 TTTATTACGCCGCCGTCGTC 61.139 55.000 0.00 0.00 46.39 4.20
533 574 3.788586 TATTACGCCGCCGTCGTCG 62.789 63.158 0.00 0.00 46.39 5.12
623 668 3.010138 TGATGGAGATTCCCTTCCGTTTT 59.990 43.478 0.00 0.00 35.03 2.43
723 791 1.678269 CGGAGAGAAAAGCGCTCACG 61.678 60.000 12.06 3.27 44.25 4.35
794 877 4.927782 GACCGCACCAGCACCACA 62.928 66.667 0.00 0.00 42.27 4.17
798 881 3.289834 GCACCAGCACCACACCAG 61.290 66.667 0.00 0.00 41.58 4.00
799 882 3.289834 CACCAGCACCACACCAGC 61.290 66.667 0.00 0.00 0.00 4.85
914 999 2.525381 CTCCTCATCCCCTCCCGG 60.525 72.222 0.00 0.00 0.00 5.73
950 1045 6.070951 TCAATCAATCCTGAATTCCTGACT 57.929 37.500 2.27 0.00 34.49 3.41
959 1054 0.250513 AATTCCTGACTCCGCAGACC 59.749 55.000 0.00 0.00 38.14 3.85
961 1056 1.251527 TTCCTGACTCCGCAGACCTC 61.252 60.000 0.00 0.00 38.14 3.85
962 1057 2.716017 CCTGACTCCGCAGACCTCC 61.716 68.421 0.00 0.00 38.14 4.30
963 1058 1.680651 CTGACTCCGCAGACCTCCT 60.681 63.158 0.00 0.00 38.14 3.69
964 1059 0.394488 CTGACTCCGCAGACCTCCTA 60.394 60.000 0.00 0.00 38.14 2.94
1005 1112 4.250305 CCATTACCCCCTCCGGCG 62.250 72.222 0.00 0.00 0.00 6.46
1013 1120 2.510906 CCCTCCGGCGAATCCAAT 59.489 61.111 9.30 0.00 34.01 3.16
1387 1500 1.150536 CTCCTCCTCCTCCTCCTCG 59.849 68.421 0.00 0.00 0.00 4.63
1675 1799 1.068281 CATCAGCGACATGGTCTAGCT 59.932 52.381 0.00 0.00 38.90 3.32
1691 1827 3.790437 CTGATCACCCTGCCCGCT 61.790 66.667 0.00 0.00 0.00 5.52
1734 1901 9.450807 AATTAACTGAATTCGTTTCTGAACTTG 57.549 29.630 16.80 0.00 36.91 3.16
1773 1940 2.858941 GAGGAGAATTAACGAGGCGAAC 59.141 50.000 0.00 0.00 0.00 3.95
1778 1945 2.304751 ATTAACGAGGCGAACCGAAT 57.695 45.000 0.00 0.00 42.76 3.34
1780 1947 0.179129 TAACGAGGCGAACCGAATCC 60.179 55.000 0.00 0.00 42.76 3.01
1781 1948 2.162338 AACGAGGCGAACCGAATCCA 62.162 55.000 0.00 0.00 42.76 3.41
1782 1949 1.447140 CGAGGCGAACCGAATCCAA 60.447 57.895 0.00 0.00 42.76 3.53
1783 1950 1.693083 CGAGGCGAACCGAATCCAAC 61.693 60.000 0.00 0.00 42.76 3.77
1784 1951 1.366854 GAGGCGAACCGAATCCAACC 61.367 60.000 0.00 0.00 42.76 3.77
1785 1952 1.673009 GGCGAACCGAATCCAACCA 60.673 57.895 0.00 0.00 0.00 3.67
1786 1953 1.644786 GGCGAACCGAATCCAACCAG 61.645 60.000 0.00 0.00 0.00 4.00
1787 1954 1.794222 CGAACCGAATCCAACCAGC 59.206 57.895 0.00 0.00 0.00 4.85
1788 1955 0.673644 CGAACCGAATCCAACCAGCT 60.674 55.000 0.00 0.00 0.00 4.24
1789 1956 1.404986 CGAACCGAATCCAACCAGCTA 60.405 52.381 0.00 0.00 0.00 3.32
1790 1957 2.741878 CGAACCGAATCCAACCAGCTAT 60.742 50.000 0.00 0.00 0.00 2.97
1813 1981 1.846124 TTTCTCCGGGGGTTCAGCT 60.846 57.895 0.00 0.00 0.00 4.24
1850 2027 5.009911 AGTGTGTTTGCTTATGCTCATTTCA 59.990 36.000 1.96 0.00 40.48 2.69
1857 2034 4.818005 TGCTTATGCTCATTTCATCATCGT 59.182 37.500 1.96 0.00 40.48 3.73
1861 2038 3.865446 TGCTCATTTCATCATCGTCACT 58.135 40.909 0.00 0.00 0.00 3.41
1862 2039 5.009854 TGCTCATTTCATCATCGTCACTA 57.990 39.130 0.00 0.00 0.00 2.74
1863 2040 4.805719 TGCTCATTTCATCATCGTCACTAC 59.194 41.667 0.00 0.00 0.00 2.73
1894 2071 8.498054 TTGTAAATTCAAGTTTGCAAATTCCA 57.502 26.923 16.21 0.00 39.56 3.53
1905 2082 2.492881 TGCAAATTCCATACCAGTGCTG 59.507 45.455 0.00 0.00 0.00 4.41
1939 2121 4.488879 GATTTTTCATCTTCCACTGCACC 58.511 43.478 0.00 0.00 0.00 5.01
1940 2122 2.655090 TTTCATCTTCCACTGCACCA 57.345 45.000 0.00 0.00 0.00 4.17
1954 2147 4.024893 CACTGCACCAGTACTGTTTACTTG 60.025 45.833 21.18 6.79 43.43 3.16
1964 2157 3.016736 ACTGTTTACTTGCAGCTTGTGT 58.983 40.909 0.00 0.00 36.26 3.72
1972 2165 7.692908 TTACTTGCAGCTTGTGTAAAATTTC 57.307 32.000 0.00 0.00 29.38 2.17
1973 2166 5.049828 ACTTGCAGCTTGTGTAAAATTTCC 58.950 37.500 0.00 0.00 29.38 3.13
1977 2170 5.161358 GCAGCTTGTGTAAAATTTCCCTAC 58.839 41.667 0.00 0.00 0.00 3.18
1991 2184 2.531771 TCCCTACAATTGGAGTGACGA 58.468 47.619 16.61 3.75 0.00 4.20
2003 2200 2.282407 GAGTGACGACTAGAGGAGACC 58.718 57.143 0.00 0.00 30.16 3.85
2005 2202 0.900421 TGACGACTAGAGGAGACCGA 59.100 55.000 0.00 0.00 0.00 4.69
2024 2221 6.605594 AGACCGAGAGAAAGAGATGATACTTT 59.394 38.462 0.00 0.00 38.74 2.66
2048 2245 1.749634 GTACAGGCGACAGGTGTATCT 59.250 52.381 0.00 0.00 0.00 1.98
2052 2249 0.530744 GGCGACAGGTGTATCTGTGA 59.469 55.000 1.90 0.00 46.76 3.58
2057 2254 1.908619 ACAGGTGTATCTGTGATGGCA 59.091 47.619 0.00 0.00 45.27 4.92
2102 2309 5.063180 TGAGAAATTGCTATTGCCAAGTG 57.937 39.130 0.00 0.00 38.71 3.16
2113 2320 2.291209 TGCCAAGTGTGAATGTGGAT 57.709 45.000 0.00 0.00 32.54 3.41
2129 2337 1.341976 TGGATAAGGCCTTGGGCTTTC 60.342 52.381 28.77 23.29 44.76 2.62
2140 2348 2.574018 GGGCTTTCTGTGTTGGGCC 61.574 63.158 0.00 0.00 38.92 5.80
2148 2356 3.297620 GTGTTGGGCCTGCACTGG 61.298 66.667 18.95 0.00 0.00 4.00
2152 2360 2.537203 TTGGGCCTGCACTGGATGA 61.537 57.895 4.53 0.00 0.00 2.92
2155 2363 3.200593 GCCTGCACTGGATGAGCG 61.201 66.667 0.00 0.00 34.96 5.03
2156 2364 3.200593 CCTGCACTGGATGAGCGC 61.201 66.667 0.00 0.00 34.96 5.92
2157 2365 2.125229 CTGCACTGGATGAGCGCT 60.125 61.111 11.27 11.27 34.96 5.92
2159 2367 3.200593 GCACTGGATGAGCGCTGG 61.201 66.667 18.48 0.00 0.00 4.85
2160 2368 2.580815 CACTGGATGAGCGCTGGA 59.419 61.111 18.48 0.00 0.00 3.86
2162 2370 2.108566 CTGGATGAGCGCTGGAGG 59.891 66.667 18.48 0.00 0.00 4.30
2163 2371 3.457625 CTGGATGAGCGCTGGAGGG 62.458 68.421 18.48 0.00 0.00 4.30
2165 2373 3.157252 GATGAGCGCTGGAGGGGA 61.157 66.667 18.48 0.00 0.00 4.81
2166 2374 2.447379 ATGAGCGCTGGAGGGGAT 60.447 61.111 18.48 0.00 0.00 3.85
2168 2376 2.049627 ATGAGCGCTGGAGGGGATTC 62.050 60.000 18.48 0.00 0.00 2.52
2169 2377 2.366167 AGCGCTGGAGGGGATTCT 60.366 61.111 10.39 0.00 0.00 2.40
2173 2432 0.253044 CGCTGGAGGGGATTCTTCAA 59.747 55.000 0.00 0.00 0.00 2.69
2189 2448 4.272489 TCTTCAATGAATGGGCCTACTTG 58.728 43.478 4.53 0.00 0.00 3.16
2197 2456 1.264749 TGGGCCTACTTGCTCATCGT 61.265 55.000 4.53 0.00 36.64 3.73
2202 2461 0.803768 CTACTTGCTCATCGTGCGCT 60.804 55.000 9.73 0.00 0.00 5.92
2203 2462 0.802222 TACTTGCTCATCGTGCGCTC 60.802 55.000 9.73 3.51 0.00 5.03
2226 2502 2.490903 AGCTACACAATCGTACGTTCCT 59.509 45.455 16.05 0.00 0.00 3.36
2227 2503 2.850647 GCTACACAATCGTACGTTCCTC 59.149 50.000 16.05 0.00 0.00 3.71
2228 2504 3.427233 GCTACACAATCGTACGTTCCTCT 60.427 47.826 16.05 0.00 0.00 3.69
2229 2505 3.213249 ACACAATCGTACGTTCCTCTC 57.787 47.619 16.05 0.00 0.00 3.20
2230 2506 2.818432 ACACAATCGTACGTTCCTCTCT 59.182 45.455 16.05 0.00 0.00 3.10
2231 2507 3.119919 ACACAATCGTACGTTCCTCTCTC 60.120 47.826 16.05 0.00 0.00 3.20
2232 2508 3.127203 CACAATCGTACGTTCCTCTCTCT 59.873 47.826 16.05 0.00 0.00 3.10
2233 2509 3.374678 ACAATCGTACGTTCCTCTCTCTC 59.625 47.826 16.05 0.00 0.00 3.20
2234 2510 2.756840 TCGTACGTTCCTCTCTCTCA 57.243 50.000 16.05 0.00 0.00 3.27
2235 2511 3.049708 TCGTACGTTCCTCTCTCTCAA 57.950 47.619 16.05 0.00 0.00 3.02
2239 2515 4.617645 CGTACGTTCCTCTCTCTCAAAAAG 59.382 45.833 7.22 0.00 0.00 2.27
2244 2520 6.598064 ACGTTCCTCTCTCTCAAAAAGAAAAA 59.402 34.615 0.00 0.00 32.23 1.94
2265 2541 4.873789 AAAACAATCGTACTACGTGACG 57.126 40.909 2.24 2.24 43.14 4.35
2266 2542 1.887320 ACAATCGTACTACGTGACGC 58.113 50.000 4.25 0.00 43.14 5.19
2270 2546 1.926886 CGTACTACGTGACGCGCTC 60.927 63.158 5.73 3.58 46.11 5.03
2283 2559 2.785258 CGCTCGCTGGCTTTTACC 59.215 61.111 0.00 0.00 0.00 2.85
2295 2571 5.004922 TGGCTTTTACCAAGTTTTCTGTG 57.995 39.130 0.00 0.00 36.55 3.66
2298 2574 4.867608 GCTTTTACCAAGTTTTCTGTGCAA 59.132 37.500 0.00 0.00 0.00 4.08
2317 2593 1.059994 GAGATTCTTGCTGTGCGCG 59.940 57.895 0.00 0.00 43.27 6.86
2321 2603 1.506309 ATTCTTGCTGTGCGCGTGAA 61.506 50.000 8.43 0.00 43.27 3.18
2328 2610 1.974249 CTGTGCGCGTGAATGATGCT 61.974 55.000 8.43 0.00 34.01 3.79
2336 2618 2.867429 CGTGAATGATGCTTGGTTTCC 58.133 47.619 0.00 0.00 0.00 3.13
2340 2622 4.219288 GTGAATGATGCTTGGTTTCCTCTT 59.781 41.667 0.00 0.00 0.00 2.85
2341 2623 4.834496 TGAATGATGCTTGGTTTCCTCTTT 59.166 37.500 0.00 0.00 0.00 2.52
2344 2626 4.410099 TGATGCTTGGTTTCCTCTTTGAT 58.590 39.130 0.00 0.00 0.00 2.57
2348 2630 4.037923 TGCTTGGTTTCCTCTTTGATGAAC 59.962 41.667 0.00 0.00 0.00 3.18
2361 2645 4.462508 TTGATGAACACACCTTTTGCAA 57.537 36.364 0.00 0.00 0.00 4.08
2362 2646 4.669206 TGATGAACACACCTTTTGCAAT 57.331 36.364 0.00 0.00 0.00 3.56
2363 2647 4.370049 TGATGAACACACCTTTTGCAATG 58.630 39.130 0.00 0.00 0.00 2.82
2378 2662 3.333804 TGCAATGCTAGAATGACGTTCA 58.666 40.909 6.82 0.00 39.39 3.18
2383 2667 6.412072 GCAATGCTAGAATGACGTTCATTTAC 59.588 38.462 10.00 4.09 46.20 2.01
2395 2682 5.970879 ACGTTCATTTACGAACTTCTGAAC 58.029 37.500 2.93 9.34 43.99 3.18
2412 2699 2.170397 TGAACTCTCTGAAGGTGTGCAA 59.830 45.455 0.00 0.00 0.00 4.08
2419 2706 1.002033 CTGAAGGTGTGCAAGCAGAAC 60.002 52.381 0.00 0.00 0.00 3.01
2433 2720 3.019564 AGCAGAACAGAAACAAGCAAGT 58.980 40.909 0.00 0.00 0.00 3.16
2454 2741 6.309712 AGTTGTCAAATTCAGATCACACTG 57.690 37.500 0.00 0.00 39.02 3.66
2462 2749 4.732672 TTCAGATCACACTGGATGAGAG 57.267 45.455 0.00 0.00 38.31 3.20
2463 2750 3.029570 TCAGATCACACTGGATGAGAGG 58.970 50.000 0.00 0.00 38.31 3.69
2464 2751 2.102757 CAGATCACACTGGATGAGAGGG 59.897 54.545 0.00 0.00 30.87 4.30
2465 2752 2.023598 AGATCACACTGGATGAGAGGGA 60.024 50.000 0.00 0.00 30.87 4.20
2466 2753 2.557555 TCACACTGGATGAGAGGGAT 57.442 50.000 0.00 0.00 0.00 3.85
2467 2754 2.113807 TCACACTGGATGAGAGGGATG 58.886 52.381 0.00 0.00 0.00 3.51
2468 2755 1.836166 CACACTGGATGAGAGGGATGT 59.164 52.381 0.00 0.00 0.00 3.06
2469 2756 1.836166 ACACTGGATGAGAGGGATGTG 59.164 52.381 0.00 0.00 0.00 3.21
2470 2757 0.835941 ACTGGATGAGAGGGATGTGC 59.164 55.000 0.00 0.00 0.00 4.57
2471 2758 0.835276 CTGGATGAGAGGGATGTGCA 59.165 55.000 0.00 0.00 0.00 4.57
2472 2759 1.420514 CTGGATGAGAGGGATGTGCAT 59.579 52.381 0.00 0.00 0.00 3.96
2473 2760 1.419012 TGGATGAGAGGGATGTGCATC 59.581 52.381 3.71 3.71 35.74 3.91
2511 2807 2.203056 TCGCAAGCAGCACACACT 60.203 55.556 0.00 0.00 46.13 3.55
2523 2820 1.076777 ACACACTGGTTGCTTGGCT 60.077 52.632 0.00 0.00 0.00 4.75
2538 2835 2.647297 GCTGCTCCAAACTGTGCC 59.353 61.111 0.00 0.00 0.00 5.01
2543 2840 2.203280 TCCAAACTGTGCCCCACG 60.203 61.111 0.00 0.00 37.14 4.94
2548 2845 2.676163 AAACTGTGCCCCACGGAGAC 62.676 60.000 10.87 0.00 42.79 3.36
2608 2921 3.949842 AATTTCCAGCCTGCTTTCTTC 57.050 42.857 0.00 0.00 0.00 2.87
2612 2925 4.307032 TTCCAGCCTGCTTTCTTCTTAT 57.693 40.909 0.00 0.00 0.00 1.73
2619 2935 6.010219 AGCCTGCTTTCTTCTTATTTTGGTA 58.990 36.000 0.00 0.00 0.00 3.25
2621 2937 6.314784 CCTGCTTTCTTCTTATTTTGGTACG 58.685 40.000 0.00 0.00 0.00 3.67
2622 2938 6.072673 CCTGCTTTCTTCTTATTTTGGTACGT 60.073 38.462 0.00 0.00 0.00 3.57
2623 2939 7.118680 CCTGCTTTCTTCTTATTTTGGTACGTA 59.881 37.037 0.00 0.00 0.00 3.57
2624 2940 7.799784 TGCTTTCTTCTTATTTTGGTACGTAC 58.200 34.615 17.56 17.56 0.00 3.67
2626 2942 8.284693 GCTTTCTTCTTATTTTGGTACGTACAA 58.715 33.333 26.02 13.80 0.00 2.41
2630 2946 8.981647 TCTTCTTATTTTGGTACGTACAAGAAC 58.018 33.333 26.02 9.71 30.13 3.01
2649 2965 7.038658 ACAAGAACCTGCTTTCTTATCTCTAGT 60.039 37.037 7.83 0.28 42.74 2.57
2653 2969 7.576861 ACCTGCTTTCTTATCTCTAGTACTC 57.423 40.000 0.00 0.00 0.00 2.59
2654 2970 6.548251 ACCTGCTTTCTTATCTCTAGTACTCC 59.452 42.308 0.00 0.00 0.00 3.85
2655 2971 6.015772 CCTGCTTTCTTATCTCTAGTACTCCC 60.016 46.154 0.00 0.00 0.00 4.30
2656 2972 6.674573 TGCTTTCTTATCTCTAGTACTCCCT 58.325 40.000 0.00 0.00 0.00 4.20
2657 2973 6.773685 TGCTTTCTTATCTCTAGTACTCCCTC 59.226 42.308 0.00 0.00 0.00 4.30
2658 2974 6.208007 GCTTTCTTATCTCTAGTACTCCCTCC 59.792 46.154 0.00 0.00 0.00 4.30
2659 2975 6.843473 TTCTTATCTCTAGTACTCCCTCCA 57.157 41.667 0.00 0.00 0.00 3.86
2660 2976 7.409408 TTCTTATCTCTAGTACTCCCTCCAT 57.591 40.000 0.00 0.00 0.00 3.41
2661 2977 7.409408 TCTTATCTCTAGTACTCCCTCCATT 57.591 40.000 0.00 0.00 0.00 3.16
2662 2978 7.827787 TCTTATCTCTAGTACTCCCTCCATTT 58.172 38.462 0.00 0.00 0.00 2.32
2663 2979 8.956860 TCTTATCTCTAGTACTCCCTCCATTTA 58.043 37.037 0.00 0.00 0.00 1.40
2664 2980 8.937207 TTATCTCTAGTACTCCCTCCATTTAC 57.063 38.462 0.00 0.00 0.00 2.01
2665 2981 6.593759 TCTCTAGTACTCCCTCCATTTACT 57.406 41.667 0.00 0.00 0.00 2.24
2666 2982 6.982899 TCTCTAGTACTCCCTCCATTTACTT 58.017 40.000 0.00 0.00 0.00 2.24
2667 2983 8.110743 TCTCTAGTACTCCCTCCATTTACTTA 57.889 38.462 0.00 0.00 0.00 2.24
2668 2984 8.734763 TCTCTAGTACTCCCTCCATTTACTTAT 58.265 37.037 0.00 0.00 0.00 1.73
2670 2986 9.804977 TCTAGTACTCCCTCCATTTACTTATAC 57.195 37.037 0.00 0.00 0.00 1.47
2671 2987 9.584008 CTAGTACTCCCTCCATTTACTTATACA 57.416 37.037 0.00 0.00 0.00 2.29
2672 2988 8.849543 AGTACTCCCTCCATTTACTTATACAA 57.150 34.615 0.00 0.00 0.00 2.41
2673 2989 8.925338 AGTACTCCCTCCATTTACTTATACAAG 58.075 37.037 0.00 0.00 37.81 3.16
2674 2990 7.138054 ACTCCCTCCATTTACTTATACAAGG 57.862 40.000 0.00 0.00 35.97 3.61
2675 2991 5.937111 TCCCTCCATTTACTTATACAAGGC 58.063 41.667 0.00 0.00 35.97 4.35
2676 2992 5.070685 CCCTCCATTTACTTATACAAGGCC 58.929 45.833 0.00 0.00 35.97 5.19
2677 2993 5.398581 CCCTCCATTTACTTATACAAGGCCA 60.399 44.000 5.01 0.00 35.97 5.36
2678 2994 5.531287 CCTCCATTTACTTATACAAGGCCAC 59.469 44.000 5.01 0.00 35.97 5.01
2679 2995 6.321821 TCCATTTACTTATACAAGGCCACT 57.678 37.500 5.01 0.00 35.97 4.00
2680 2996 7.419750 CCTCCATTTACTTATACAAGGCCACTA 60.420 40.741 5.01 0.00 35.97 2.74
2681 2997 8.041143 TCCATTTACTTATACAAGGCCACTAT 57.959 34.615 5.01 0.00 35.97 2.12
2682 2998 7.936847 TCCATTTACTTATACAAGGCCACTATG 59.063 37.037 5.01 0.21 35.97 2.23
2683 2999 7.936847 CCATTTACTTATACAAGGCCACTATGA 59.063 37.037 5.01 0.00 35.97 2.15
2684 3000 9.337396 CATTTACTTATACAAGGCCACTATGAA 57.663 33.333 5.01 0.00 35.97 2.57
2685 3001 9.914834 ATTTACTTATACAAGGCCACTATGAAA 57.085 29.630 5.01 0.00 35.97 2.69
2686 3002 9.914834 TTTACTTATACAAGGCCACTATGAAAT 57.085 29.630 5.01 1.32 35.97 2.17
2694 3010 8.766994 ACAAGGCCACTATGAAATATATGTTT 57.233 30.769 5.01 0.00 0.00 2.83
2695 3011 9.200817 ACAAGGCCACTATGAAATATATGTTTT 57.799 29.630 5.01 0.00 0.00 2.43
2696 3012 9.467258 CAAGGCCACTATGAAATATATGTTTTG 57.533 33.333 5.01 0.00 0.00 2.44
2697 3013 7.661040 AGGCCACTATGAAATATATGTTTTGC 58.339 34.615 5.01 0.00 0.00 3.68
2698 3014 7.287466 AGGCCACTATGAAATATATGTTTTGCA 59.713 33.333 5.01 0.00 0.00 4.08
2699 3015 8.090214 GGCCACTATGAAATATATGTTTTGCAT 58.910 33.333 0.00 2.44 41.42 3.96
2700 3016 9.480053 GCCACTATGAAATATATGTTTTGCATT 57.520 29.630 0.00 0.00 38.94 3.56
2713 3029 9.801873 ATATGTTTTGCATTTATACAAGACCAC 57.198 29.630 0.00 0.00 38.94 4.16
2714 3030 6.451393 TGTTTTGCATTTATACAAGACCACC 58.549 36.000 0.00 0.00 31.72 4.61
2715 3031 6.040955 TGTTTTGCATTTATACAAGACCACCA 59.959 34.615 0.00 0.00 31.72 4.17
2716 3032 6.656632 TTTGCATTTATACAAGACCACCAA 57.343 33.333 0.00 0.00 0.00 3.67
2717 3033 5.637006 TGCATTTATACAAGACCACCAAC 57.363 39.130 0.00 0.00 0.00 3.77
2718 3034 5.073428 TGCATTTATACAAGACCACCAACA 58.927 37.500 0.00 0.00 0.00 3.33
2719 3035 5.182950 TGCATTTATACAAGACCACCAACAG 59.817 40.000 0.00 0.00 0.00 3.16
2720 3036 5.183140 GCATTTATACAAGACCACCAACAGT 59.817 40.000 0.00 0.00 0.00 3.55
2721 3037 6.373216 GCATTTATACAAGACCACCAACAGTA 59.627 38.462 0.00 0.00 0.00 2.74
2722 3038 7.094549 GCATTTATACAAGACCACCAACAGTAA 60.095 37.037 0.00 0.00 0.00 2.24
2723 3039 8.956426 CATTTATACAAGACCACCAACAGTAAT 58.044 33.333 0.00 0.00 0.00 1.89
2724 3040 8.556213 TTTATACAAGACCACCAACAGTAATC 57.444 34.615 0.00 0.00 0.00 1.75
2725 3041 3.399330 ACAAGACCACCAACAGTAATCG 58.601 45.455 0.00 0.00 0.00 3.34
2726 3042 3.070446 ACAAGACCACCAACAGTAATCGA 59.930 43.478 0.00 0.00 0.00 3.59
2727 3043 4.062293 CAAGACCACCAACAGTAATCGAA 58.938 43.478 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.763984 TTTAAAAATATTACCCAATCGGCCTA 57.236 30.769 0.00 0.00 33.26 3.93
1 2 7.663043 TTTAAAAATATTACCCAATCGGCCT 57.337 32.000 0.00 0.00 33.26 5.19
2 3 8.719560 TTTTTAAAAATATTACCCAATCGGCC 57.280 30.769 9.31 0.00 33.26 6.13
31 32 8.879759 GCAGCTAGAAATATTATGCCGTAATTA 58.120 33.333 0.00 0.00 34.82 1.40
32 33 7.607991 AGCAGCTAGAAATATTATGCCGTAATT 59.392 33.333 0.00 0.00 34.82 1.40
33 34 7.065085 CAGCAGCTAGAAATATTATGCCGTAAT 59.935 37.037 0.00 0.00 36.90 1.89
34 35 6.368791 CAGCAGCTAGAAATATTATGCCGTAA 59.631 38.462 0.00 0.00 32.71 3.18
35 36 5.869344 CAGCAGCTAGAAATATTATGCCGTA 59.131 40.000 0.00 0.00 32.71 4.02
36 37 4.692625 CAGCAGCTAGAAATATTATGCCGT 59.307 41.667 0.00 0.00 32.71 5.68
37 38 4.436584 GCAGCAGCTAGAAATATTATGCCG 60.437 45.833 0.00 0.00 37.91 5.69
38 39 4.142513 GGCAGCAGCTAGAAATATTATGCC 60.143 45.833 0.00 0.00 42.25 4.40
39 40 4.456911 TGGCAGCAGCTAGAAATATTATGC 59.543 41.667 0.00 0.00 41.70 3.14
40 41 6.150641 ACATGGCAGCAGCTAGAAATATTATG 59.849 38.462 0.00 0.00 41.70 1.90
41 42 6.243900 ACATGGCAGCAGCTAGAAATATTAT 58.756 36.000 0.00 0.00 41.70 1.28
42 43 5.624159 ACATGGCAGCAGCTAGAAATATTA 58.376 37.500 0.00 0.00 41.70 0.98
43 44 4.467769 ACATGGCAGCAGCTAGAAATATT 58.532 39.130 0.00 0.00 41.70 1.28
44 45 4.070716 GACATGGCAGCAGCTAGAAATAT 58.929 43.478 0.00 0.00 41.70 1.28
45 46 3.118298 TGACATGGCAGCAGCTAGAAATA 60.118 43.478 0.00 0.00 41.70 1.40
46 47 2.295885 GACATGGCAGCAGCTAGAAAT 58.704 47.619 0.00 0.00 41.70 2.17
47 48 1.003464 TGACATGGCAGCAGCTAGAAA 59.997 47.619 0.00 0.00 41.70 2.52
48 49 0.614812 TGACATGGCAGCAGCTAGAA 59.385 50.000 0.00 0.00 41.70 2.10
49 50 0.835276 ATGACATGGCAGCAGCTAGA 59.165 50.000 7.63 0.00 41.70 2.43
50 51 1.227639 GATGACATGGCAGCAGCTAG 58.772 55.000 13.07 0.00 41.70 3.42
51 52 0.542805 TGATGACATGGCAGCAGCTA 59.457 50.000 17.30 0.00 41.70 3.32
52 53 0.323087 TTGATGACATGGCAGCAGCT 60.323 50.000 20.46 0.00 41.70 4.24
53 54 0.100682 CTTGATGACATGGCAGCAGC 59.899 55.000 20.46 3.05 35.40 5.25
54 55 1.671328 CTCTTGATGACATGGCAGCAG 59.329 52.381 20.46 14.00 35.40 4.24
55 56 1.003928 ACTCTTGATGACATGGCAGCA 59.996 47.619 17.30 17.30 31.49 4.41
56 57 1.747709 ACTCTTGATGACATGGCAGC 58.252 50.000 10.67 10.67 0.00 5.25
57 58 4.511527 ACTAACTCTTGATGACATGGCAG 58.488 43.478 7.63 0.00 0.00 4.85
58 59 4.558226 ACTAACTCTTGATGACATGGCA 57.442 40.909 2.18 2.18 0.00 4.92
59 60 7.386299 CCTTATACTAACTCTTGATGACATGGC 59.614 40.741 0.00 0.00 0.00 4.40
60 61 8.424918 ACCTTATACTAACTCTTGATGACATGG 58.575 37.037 0.00 0.00 0.00 3.66
61 62 9.823647 AACCTTATACTAACTCTTGATGACATG 57.176 33.333 0.00 0.00 0.00 3.21
85 86 7.280205 TGAGAGAAAGTGAGAAAAGGTTGTAAC 59.720 37.037 0.00 0.00 0.00 2.50
86 87 7.335627 TGAGAGAAAGTGAGAAAAGGTTGTAA 58.664 34.615 0.00 0.00 0.00 2.41
87 88 6.884832 TGAGAGAAAGTGAGAAAAGGTTGTA 58.115 36.000 0.00 0.00 0.00 2.41
88 89 5.745227 TGAGAGAAAGTGAGAAAAGGTTGT 58.255 37.500 0.00 0.00 0.00 3.32
89 90 6.683974 TTGAGAGAAAGTGAGAAAAGGTTG 57.316 37.500 0.00 0.00 0.00 3.77
90 91 7.286313 AGATTGAGAGAAAGTGAGAAAAGGTT 58.714 34.615 0.00 0.00 0.00 3.50
91 92 6.836242 AGATTGAGAGAAAGTGAGAAAAGGT 58.164 36.000 0.00 0.00 0.00 3.50
92 93 7.160726 AGAGATTGAGAGAAAGTGAGAAAAGG 58.839 38.462 0.00 0.00 0.00 3.11
93 94 8.090214 AGAGAGATTGAGAGAAAGTGAGAAAAG 58.910 37.037 0.00 0.00 0.00 2.27
94 95 7.961351 AGAGAGATTGAGAGAAAGTGAGAAAA 58.039 34.615 0.00 0.00 0.00 2.29
95 96 7.309744 GGAGAGAGATTGAGAGAAAGTGAGAAA 60.310 40.741 0.00 0.00 0.00 2.52
96 97 6.152661 GGAGAGAGATTGAGAGAAAGTGAGAA 59.847 42.308 0.00 0.00 0.00 2.87
97 98 5.652014 GGAGAGAGATTGAGAGAAAGTGAGA 59.348 44.000 0.00 0.00 0.00 3.27
98 99 5.653769 AGGAGAGAGATTGAGAGAAAGTGAG 59.346 44.000 0.00 0.00 0.00 3.51
99 100 5.579047 AGGAGAGAGATTGAGAGAAAGTGA 58.421 41.667 0.00 0.00 0.00 3.41
100 101 5.418524 TGAGGAGAGAGATTGAGAGAAAGTG 59.581 44.000 0.00 0.00 0.00 3.16
101 102 5.418840 GTGAGGAGAGAGATTGAGAGAAAGT 59.581 44.000 0.00 0.00 0.00 2.66
102 103 5.418524 TGTGAGGAGAGAGATTGAGAGAAAG 59.581 44.000 0.00 0.00 0.00 2.62
103 104 5.328565 TGTGAGGAGAGAGATTGAGAGAAA 58.671 41.667 0.00 0.00 0.00 2.52
104 105 4.928263 TGTGAGGAGAGAGATTGAGAGAA 58.072 43.478 0.00 0.00 0.00 2.87
105 106 4.582973 TGTGAGGAGAGAGATTGAGAGA 57.417 45.455 0.00 0.00 0.00 3.10
106 107 5.857471 AATGTGAGGAGAGAGATTGAGAG 57.143 43.478 0.00 0.00 0.00 3.20
107 108 7.724490 TTTAATGTGAGGAGAGAGATTGAGA 57.276 36.000 0.00 0.00 0.00 3.27
108 109 7.986320 ACATTTAATGTGAGGAGAGAGATTGAG 59.014 37.037 10.02 0.00 43.01 3.02
109 110 7.855375 ACATTTAATGTGAGGAGAGAGATTGA 58.145 34.615 10.02 0.00 43.01 2.57
110 111 8.503458 AACATTTAATGTGAGGAGAGAGATTG 57.497 34.615 11.60 0.00 44.07 2.67
111 112 9.525826 AAAACATTTAATGTGAGGAGAGAGATT 57.474 29.630 11.60 0.00 44.07 2.40
112 113 9.171877 GAAAACATTTAATGTGAGGAGAGAGAT 57.828 33.333 11.60 0.00 44.07 2.75
113 114 8.378565 AGAAAACATTTAATGTGAGGAGAGAGA 58.621 33.333 11.60 0.00 44.07 3.10
114 115 8.558973 AGAAAACATTTAATGTGAGGAGAGAG 57.441 34.615 11.60 0.00 44.07 3.20
115 116 8.924511 AAGAAAACATTTAATGTGAGGAGAGA 57.075 30.769 11.60 0.00 44.07 3.10
116 117 9.971922 AAAAGAAAACATTTAATGTGAGGAGAG 57.028 29.630 11.60 0.00 44.07 3.20
119 120 9.974980 GGTAAAAGAAAACATTTAATGTGAGGA 57.025 29.630 11.60 0.00 44.07 3.71
120 121 9.981114 AGGTAAAAGAAAACATTTAATGTGAGG 57.019 29.630 11.60 0.00 44.07 3.86
140 141 8.630037 GGAGAAGAGAAACATGAAAAAGGTAAA 58.370 33.333 0.00 0.00 0.00 2.01
141 142 7.777910 TGGAGAAGAGAAACATGAAAAAGGTAA 59.222 33.333 0.00 0.00 0.00 2.85
142 143 7.228706 GTGGAGAAGAGAAACATGAAAAAGGTA 59.771 37.037 0.00 0.00 0.00 3.08
143 144 6.039829 GTGGAGAAGAGAAACATGAAAAAGGT 59.960 38.462 0.00 0.00 0.00 3.50
144 145 6.039717 TGTGGAGAAGAGAAACATGAAAAAGG 59.960 38.462 0.00 0.00 0.00 3.11
145 146 7.031226 TGTGGAGAAGAGAAACATGAAAAAG 57.969 36.000 0.00 0.00 0.00 2.27
146 147 7.587037 ATGTGGAGAAGAGAAACATGAAAAA 57.413 32.000 0.00 0.00 30.53 1.94
147 148 7.391554 CCTATGTGGAGAAGAGAAACATGAAAA 59.608 37.037 0.00 0.00 38.35 2.29
148 149 6.881065 CCTATGTGGAGAAGAGAAACATGAAA 59.119 38.462 0.00 0.00 38.35 2.69
149 150 6.409704 CCTATGTGGAGAAGAGAAACATGAA 58.590 40.000 0.00 0.00 38.35 2.57
150 151 5.627735 GCCTATGTGGAGAAGAGAAACATGA 60.628 44.000 0.00 0.00 38.35 3.07
151 152 4.574013 GCCTATGTGGAGAAGAGAAACATG 59.426 45.833 0.00 0.00 38.35 3.21
152 153 4.225942 TGCCTATGTGGAGAAGAGAAACAT 59.774 41.667 0.00 0.00 38.35 2.71
153 154 3.582647 TGCCTATGTGGAGAAGAGAAACA 59.417 43.478 0.00 0.00 38.35 2.83
154 155 4.207891 TGCCTATGTGGAGAAGAGAAAC 57.792 45.455 0.00 0.00 38.35 2.78
155 156 4.908601 TTGCCTATGTGGAGAAGAGAAA 57.091 40.909 0.00 0.00 38.35 2.52
156 157 4.908601 TTTGCCTATGTGGAGAAGAGAA 57.091 40.909 0.00 0.00 38.35 2.87
157 158 4.287067 ACTTTTGCCTATGTGGAGAAGAGA 59.713 41.667 0.00 0.00 38.35 3.10
158 159 4.394300 CACTTTTGCCTATGTGGAGAAGAG 59.606 45.833 0.00 0.00 38.35 2.85
159 160 4.326826 CACTTTTGCCTATGTGGAGAAGA 58.673 43.478 0.00 0.00 38.35 2.87
160 161 3.119708 GCACTTTTGCCTATGTGGAGAAG 60.120 47.826 0.00 0.00 43.66 2.85
161 162 2.819608 GCACTTTTGCCTATGTGGAGAA 59.180 45.455 0.00 0.00 43.66 2.87
162 163 2.436417 GCACTTTTGCCTATGTGGAGA 58.564 47.619 0.00 0.00 43.66 3.71
163 164 2.927553 GCACTTTTGCCTATGTGGAG 57.072 50.000 0.00 0.00 43.66 3.86
174 175 1.144969 CTGCTTGCATGGCACTTTTG 58.855 50.000 10.24 0.00 38.71 2.44
175 176 0.034337 CCTGCTTGCATGGCACTTTT 59.966 50.000 10.24 0.00 38.71 2.27
176 177 1.669440 CCTGCTTGCATGGCACTTT 59.331 52.632 10.24 0.00 38.71 2.66
177 178 2.939261 GCCTGCTTGCATGGCACTT 61.939 57.895 21.96 0.00 45.46 3.16
178 179 3.379445 GCCTGCTTGCATGGCACT 61.379 61.111 21.96 0.00 45.46 4.40
181 182 1.268899 CTATAAGCCTGCTTGCATGGC 59.731 52.381 20.42 20.42 46.42 4.40
182 183 1.268899 GCTATAAGCCTGCTTGCATGG 59.731 52.381 14.42 4.43 37.47 3.66
183 184 2.701073 GCTATAAGCCTGCTTGCATG 57.299 50.000 14.42 0.00 37.47 4.06
194 195 7.379750 AGCAAGTACAATAGTAGGCTATAAGC 58.620 38.462 0.00 0.00 41.46 3.09
195 196 8.798402 AGAGCAAGTACAATAGTAGGCTATAAG 58.202 37.037 0.00 0.00 36.95 1.73
196 197 8.707796 AGAGCAAGTACAATAGTAGGCTATAA 57.292 34.615 0.00 0.00 36.95 0.98
197 198 7.942894 TGAGAGCAAGTACAATAGTAGGCTATA 59.057 37.037 0.00 0.00 36.95 1.31
198 199 6.778069 TGAGAGCAAGTACAATAGTAGGCTAT 59.222 38.462 0.00 0.00 39.46 2.97
199 200 6.127101 TGAGAGCAAGTACAATAGTAGGCTA 58.873 40.000 0.00 0.00 35.02 3.93
200 201 4.956700 TGAGAGCAAGTACAATAGTAGGCT 59.043 41.667 0.00 0.00 36.55 4.58
201 202 5.263968 TGAGAGCAAGTACAATAGTAGGC 57.736 43.478 0.00 0.00 0.00 3.93
202 203 6.219473 CCATGAGAGCAAGTACAATAGTAGG 58.781 44.000 0.00 0.00 0.00 3.18
203 204 5.694006 GCCATGAGAGCAAGTACAATAGTAG 59.306 44.000 0.00 0.00 0.00 2.57
204 205 5.128663 TGCCATGAGAGCAAGTACAATAGTA 59.871 40.000 0.00 0.00 37.28 1.82
205 206 4.080919 TGCCATGAGAGCAAGTACAATAGT 60.081 41.667 0.00 0.00 37.28 2.12
206 207 4.445453 TGCCATGAGAGCAAGTACAATAG 58.555 43.478 0.00 0.00 37.28 1.73
207 208 4.486125 TGCCATGAGAGCAAGTACAATA 57.514 40.909 0.00 0.00 37.28 1.90
208 209 3.354948 TGCCATGAGAGCAAGTACAAT 57.645 42.857 0.00 0.00 37.28 2.71
209 210 2.857186 TGCCATGAGAGCAAGTACAA 57.143 45.000 0.00 0.00 37.28 2.41
210 211 2.857186 TTGCCATGAGAGCAAGTACA 57.143 45.000 4.02 0.00 44.95 2.90
216 217 2.437180 CCGCTTGCCATGAGAGCA 60.437 61.111 13.02 3.84 38.81 4.26
217 218 3.885521 GCCGCTTGCCATGAGAGC 61.886 66.667 0.00 0.00 0.00 4.09
226 227 3.595758 AACACAGTGGCCGCTTGC 61.596 61.111 18.42 0.00 40.16 4.01
227 228 2.332514 CAACACAGTGGCCGCTTG 59.667 61.111 18.42 19.58 0.00 4.01
228 229 2.906897 CCAACACAGTGGCCGCTT 60.907 61.111 18.42 5.57 0.00 4.68
234 235 0.608856 TAGGCATGCCAACACAGTGG 60.609 55.000 37.18 0.00 42.05 4.00
235 236 1.246649 TTAGGCATGCCAACACAGTG 58.753 50.000 37.18 0.00 38.92 3.66
236 237 2.094675 GATTAGGCATGCCAACACAGT 58.905 47.619 37.18 18.07 38.92 3.55
237 238 2.093890 TGATTAGGCATGCCAACACAG 58.906 47.619 37.18 0.00 38.92 3.66
238 239 2.093890 CTGATTAGGCATGCCAACACA 58.906 47.619 37.18 26.96 38.92 3.72
239 240 2.368439 TCTGATTAGGCATGCCAACAC 58.632 47.619 37.18 24.21 38.92 3.32
240 241 2.804986 TCTGATTAGGCATGCCAACA 57.195 45.000 37.18 26.33 38.92 3.33
241 242 5.972107 ATATTCTGATTAGGCATGCCAAC 57.028 39.130 37.18 23.55 38.92 3.77
242 243 6.982160 AAATATTCTGATTAGGCATGCCAA 57.018 33.333 37.18 27.29 38.92 4.52
243 244 6.982160 AAAATATTCTGATTAGGCATGCCA 57.018 33.333 37.18 19.62 38.92 4.92
277 278 1.598130 GCTCGTGCCCAACTTCACT 60.598 57.895 0.00 0.00 0.00 3.41
294 295 2.781158 AAGCACGGGTGTGTTTGGC 61.781 57.895 0.25 0.00 46.14 4.52
308 309 2.206750 GGTACAAAGACGTCACAAGCA 58.793 47.619 19.50 0.00 0.00 3.91
310 311 3.713288 TCTGGTACAAAGACGTCACAAG 58.287 45.455 19.50 9.58 38.70 3.16
334 344 2.570415 TCGAGTGTGTCCTCTCTTCT 57.430 50.000 0.00 0.00 0.00 2.85
335 345 2.750166 TGATCGAGTGTGTCCTCTCTTC 59.250 50.000 0.00 0.00 0.00 2.87
336 346 2.796557 TGATCGAGTGTGTCCTCTCTT 58.203 47.619 0.00 0.00 0.00 2.85
337 347 2.498644 TGATCGAGTGTGTCCTCTCT 57.501 50.000 0.00 0.00 0.00 3.10
338 348 3.443037 CAATGATCGAGTGTGTCCTCTC 58.557 50.000 0.00 0.00 0.00 3.20
344 354 1.460743 CAACGCAATGATCGAGTGTGT 59.539 47.619 6.14 6.14 45.00 3.72
360 370 2.162809 GGGGTAATAAACACAGCCAACG 59.837 50.000 0.00 0.00 30.67 4.10
367 377 1.898472 TCGTCGGGGGTAATAAACACA 59.102 47.619 0.00 0.00 30.67 3.72
381 411 0.528924 TCCCAAGTACACATCGTCGG 59.471 55.000 0.00 0.00 0.00 4.79
383 413 2.230508 TCTGTCCCAAGTACACATCGTC 59.769 50.000 0.00 0.00 0.00 4.20
399 429 0.243907 TGCAGGCGAGTAACTCTGTC 59.756 55.000 0.00 0.00 0.00 3.51
432 463 2.108157 ACTTGCTCCGTCGTGCAA 59.892 55.556 17.69 17.69 42.61 4.08
450 481 0.239347 AGGACGTACGTGTACTGCAC 59.761 55.000 28.16 8.35 44.36 4.57
453 484 1.135859 GTGGAGGACGTACGTGTACTG 60.136 57.143 28.16 0.00 31.57 2.74
455 486 0.179215 CGTGGAGGACGTACGTGTAC 60.179 60.000 28.16 14.09 43.50 2.90
456 487 2.161831 CGTGGAGGACGTACGTGTA 58.838 57.895 28.16 4.08 43.50 2.90
465 496 4.436998 CCGTGAGCCGTGGAGGAC 62.437 72.222 0.00 0.00 45.00 3.85
489 523 4.360027 CACTGACGCACGCACAGC 62.360 66.667 14.54 0.00 35.38 4.40
490 524 4.360027 GCACTGACGCACGCACAG 62.360 66.667 13.51 13.51 37.62 3.66
491 525 4.889856 AGCACTGACGCACGCACA 62.890 61.111 0.00 0.00 0.00 4.57
492 526 4.360027 CAGCACTGACGCACGCAC 62.360 66.667 0.00 0.00 0.00 5.34
493 527 4.889856 ACAGCACTGACGCACGCA 62.890 61.111 4.31 0.00 0.00 5.24
494 528 4.064491 GACAGCACTGACGCACGC 62.064 66.667 4.31 0.00 0.00 5.34
540 581 4.479993 ATCTGCTGACCGGCTGGC 62.480 66.667 12.89 5.16 39.70 4.85
541 582 1.395045 TAGATCTGCTGACCGGCTGG 61.395 60.000 11.02 11.02 42.84 4.85
542 583 0.031857 CTAGATCTGCTGACCGGCTG 59.968 60.000 5.18 0.00 0.00 4.85
543 584 1.743321 GCTAGATCTGCTGACCGGCT 61.743 60.000 5.18 0.00 0.00 5.52
589 634 1.683385 TCTCCATCATCATCGCTCGTT 59.317 47.619 0.00 0.00 0.00 3.85
646 691 3.295093 TGTGTGTGACCACCATTTTCAT 58.705 40.909 0.00 0.00 41.09 2.57
648 693 2.543653 GCTGTGTGTGACCACCATTTTC 60.544 50.000 0.00 0.00 41.09 2.29
652 697 0.819259 GTGCTGTGTGTGACCACCAT 60.819 55.000 0.00 0.00 41.09 3.55
886 969 0.472044 GATGAGGAGGAAGAAGGGGC 59.528 60.000 0.00 0.00 0.00 5.80
914 999 0.107703 TGATTGATGGTGCGGGAGAC 60.108 55.000 0.00 0.00 0.00 3.36
950 1045 1.379977 CAGGTAGGAGGTCTGCGGA 60.380 63.158 0.00 0.00 0.00 5.54
959 1054 1.908483 GTTGGGGAGCAGGTAGGAG 59.092 63.158 0.00 0.00 0.00 3.69
961 1056 2.584608 CGTTGGGGAGCAGGTAGG 59.415 66.667 0.00 0.00 0.00 3.18
962 1057 2.584608 CCGTTGGGGAGCAGGTAG 59.415 66.667 0.00 0.00 38.47 3.18
963 1058 2.808761 TAGCCGTTGGGGAGCAGGTA 62.809 60.000 0.00 0.00 38.47 3.08
1005 1112 3.553508 CGCCATTGGATTGGATTGGATTC 60.554 47.826 6.95 0.00 39.25 2.52
1013 1120 0.742990 GTCGTCGCCATTGGATTGGA 60.743 55.000 6.95 0.00 39.25 3.53
1163 1270 2.991540 GGTTGGTCCCTGCTTGGC 60.992 66.667 0.00 0.00 0.00 4.52
1321 1428 2.670148 GGCCCTCCAGTCGGTTGAT 61.670 63.158 0.00 0.00 0.00 2.57
1363 1473 2.520741 GAGGAGGAGGAGGAGGCG 60.521 72.222 0.00 0.00 0.00 5.52
1365 1475 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
1366 1476 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
1367 1477 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
1368 1478 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
1369 1479 1.150536 CGAGGAGGAGGAGGAGGAG 59.849 68.421 0.00 0.00 0.00 3.69
1370 1480 2.387772 CCGAGGAGGAGGAGGAGGA 61.388 68.421 0.00 0.00 45.00 3.71
1492 1605 1.004440 GAGAGACGGCCAGCTTGTT 60.004 57.895 2.24 0.00 0.00 2.83
1493 1606 1.910772 AGAGAGACGGCCAGCTTGT 60.911 57.895 2.24 0.00 0.00 3.16
1494 1607 1.447489 CAGAGAGACGGCCAGCTTG 60.447 63.158 2.24 0.00 0.00 4.01
1495 1608 1.882989 GACAGAGAGACGGCCAGCTT 61.883 60.000 2.24 0.00 0.00 3.74
1675 1799 3.785859 GAGCGGGCAGGGTGATCA 61.786 66.667 0.00 0.00 0.00 2.92
1691 1827 1.327690 ATTCGCAGAAGCTACCCCGA 61.328 55.000 0.00 0.00 45.90 5.14
1695 1831 4.181578 TCAGTTAATTCGCAGAAGCTACC 58.818 43.478 0.00 0.00 45.90 3.18
1697 1833 6.985188 AATTCAGTTAATTCGCAGAAGCTA 57.015 33.333 0.00 0.00 45.90 3.32
1734 1901 2.223805 CCTCTGCCATTTTTATTCCGCC 60.224 50.000 0.00 0.00 0.00 6.13
1773 1940 2.800544 CGTAATAGCTGGTTGGATTCGG 59.199 50.000 0.00 0.00 0.00 4.30
1778 1945 4.501071 GAGAAACGTAATAGCTGGTTGGA 58.499 43.478 0.00 0.00 0.00 3.53
1780 1947 3.306166 CGGAGAAACGTAATAGCTGGTTG 59.694 47.826 0.00 0.00 0.00 3.77
1781 1948 3.518590 CGGAGAAACGTAATAGCTGGTT 58.481 45.455 0.00 0.00 0.00 3.67
1782 1949 2.159142 CCGGAGAAACGTAATAGCTGGT 60.159 50.000 0.00 0.00 0.00 4.00
1783 1950 2.470821 CCGGAGAAACGTAATAGCTGG 58.529 52.381 0.00 0.00 0.00 4.85
1784 1951 2.470821 CCCGGAGAAACGTAATAGCTG 58.529 52.381 0.73 0.00 0.00 4.24
1785 1952 1.411612 CCCCGGAGAAACGTAATAGCT 59.588 52.381 0.73 0.00 0.00 3.32
1786 1953 1.539712 CCCCCGGAGAAACGTAATAGC 60.540 57.143 0.73 0.00 0.00 2.97
1787 1954 1.758862 ACCCCCGGAGAAACGTAATAG 59.241 52.381 0.73 0.00 0.00 1.73
1788 1955 1.864669 ACCCCCGGAGAAACGTAATA 58.135 50.000 0.73 0.00 0.00 0.98
1789 1956 0.986527 AACCCCCGGAGAAACGTAAT 59.013 50.000 0.73 0.00 0.00 1.89
1790 1957 0.321346 GAACCCCCGGAGAAACGTAA 59.679 55.000 0.73 0.00 0.00 3.18
1813 1981 3.281727 AACACACTGGCAGAGAAAGAA 57.718 42.857 23.66 0.00 0.00 2.52
1857 2034 8.821147 ACTTGAATTTACAATGTACGTAGTGA 57.179 30.769 0.00 0.00 45.73 3.41
1861 2038 8.343366 TGCAAACTTGAATTTACAATGTACGTA 58.657 29.630 0.00 0.00 0.00 3.57
1862 2039 7.197017 TGCAAACTTGAATTTACAATGTACGT 58.803 30.769 0.00 0.00 0.00 3.57
1863 2040 7.616103 TGCAAACTTGAATTTACAATGTACG 57.384 32.000 0.00 0.00 0.00 3.67
1905 2082 7.225341 GGAAGATGAAAAATCCAATTGGCATAC 59.775 37.037 20.33 9.01 34.44 2.39
1939 2121 4.273480 ACAAGCTGCAAGTAAACAGTACTG 59.727 41.667 21.44 21.44 36.26 2.74
1940 2122 4.273480 CACAAGCTGCAAGTAAACAGTACT 59.727 41.667 1.02 0.00 36.26 2.73
1954 2147 4.257267 AGGGAAATTTTACACAAGCTGC 57.743 40.909 0.00 0.00 0.00 5.25
1964 2157 7.094549 CGTCACTCCAATTGTAGGGAAATTTTA 60.095 37.037 4.32 0.00 31.58 1.52
1972 2165 2.233922 AGTCGTCACTCCAATTGTAGGG 59.766 50.000 4.43 0.00 0.00 3.53
1973 2166 3.594603 AGTCGTCACTCCAATTGTAGG 57.405 47.619 4.43 0.00 0.00 3.18
1977 2170 3.444034 TCCTCTAGTCGTCACTCCAATTG 59.556 47.826 0.00 0.00 33.62 2.32
1991 2184 3.520317 TCTTTCTCTCGGTCTCCTCTAGT 59.480 47.826 0.00 0.00 0.00 2.57
2003 2200 8.402472 ACTGTAAAGTATCATCTCTTTCTCTCG 58.598 37.037 0.00 0.00 35.79 4.04
2024 2221 0.885879 CACCTGTCGCCTGTACTGTA 59.114 55.000 0.00 0.00 0.00 2.74
2031 2228 0.532573 ACAGATACACCTGTCGCCTG 59.467 55.000 0.00 0.00 43.34 4.85
2048 2245 3.538379 CAGTAGCACTGCCATCACA 57.462 52.632 0.00 0.00 39.62 3.58
2078 2285 5.927689 CACTTGGCAATAGCAATTTCTCAAA 59.072 36.000 0.00 0.00 44.61 2.69
2081 2288 4.860907 CACACTTGGCAATAGCAATTTCTC 59.139 41.667 0.00 0.00 44.61 2.87
2082 2289 4.523943 TCACACTTGGCAATAGCAATTTCT 59.476 37.500 0.00 0.00 44.61 2.52
2083 2290 4.808558 TCACACTTGGCAATAGCAATTTC 58.191 39.130 0.00 0.00 44.61 2.17
2086 2293 4.221262 ACATTCACACTTGGCAATAGCAAT 59.779 37.500 0.00 0.00 44.61 3.56
2102 2309 2.689983 CCAAGGCCTTATCCACATTCAC 59.310 50.000 20.00 0.00 0.00 3.18
2125 2333 1.108727 TGCAGGCCCAACACAGAAAG 61.109 55.000 0.00 0.00 0.00 2.62
2129 2337 2.203394 AGTGCAGGCCCAACACAG 60.203 61.111 19.25 0.00 36.76 3.66
2148 2356 2.049627 AATCCCCTCCAGCGCTCATC 62.050 60.000 7.13 0.00 0.00 2.92
2152 2360 1.977293 GAAGAATCCCCTCCAGCGCT 61.977 60.000 2.64 2.64 0.00 5.92
2155 2363 2.092212 TCATTGAAGAATCCCCTCCAGC 60.092 50.000 0.00 0.00 0.00 4.85
2156 2364 3.939740 TCATTGAAGAATCCCCTCCAG 57.060 47.619 0.00 0.00 0.00 3.86
2157 2365 4.539726 CATTCATTGAAGAATCCCCTCCA 58.460 43.478 5.21 0.00 36.13 3.86
2159 2367 3.893813 CCCATTCATTGAAGAATCCCCTC 59.106 47.826 5.21 0.00 36.13 4.30
2160 2368 3.919834 CCCATTCATTGAAGAATCCCCT 58.080 45.455 5.21 0.00 36.13 4.79
2162 2370 2.366590 GGCCCATTCATTGAAGAATCCC 59.633 50.000 5.21 0.00 36.13 3.85
2163 2371 3.303049 AGGCCCATTCATTGAAGAATCC 58.697 45.455 0.00 4.29 36.13 3.01
2165 2373 5.134725 AGTAGGCCCATTCATTGAAGAAT 57.865 39.130 0.00 0.00 38.72 2.40
2166 2374 4.591321 AGTAGGCCCATTCATTGAAGAA 57.409 40.909 0.00 0.00 0.00 2.52
2168 2376 3.181483 GCAAGTAGGCCCATTCATTGAAG 60.181 47.826 0.00 0.00 0.00 3.02
2169 2377 2.760092 GCAAGTAGGCCCATTCATTGAA 59.240 45.455 0.00 0.75 0.00 2.69
2173 2432 1.565759 TGAGCAAGTAGGCCCATTCAT 59.434 47.619 0.00 0.00 0.00 2.57
2189 2448 2.299347 GCTAGAGCGCACGATGAGC 61.299 63.158 11.47 9.16 43.69 4.26
2202 2461 4.201851 GGAACGTACGATTGTGTAGCTAGA 60.202 45.833 24.41 0.00 0.00 2.43
2203 2462 4.033684 GGAACGTACGATTGTGTAGCTAG 58.966 47.826 24.41 0.00 0.00 3.42
2244 2520 3.120121 GCGTCACGTAGTACGATTGTTTT 59.880 43.478 28.47 1.61 46.05 2.43
2254 2530 2.396861 CGAGCGCGTCACGTAGTA 59.603 61.111 8.43 0.00 41.61 1.82
2265 2541 2.098489 GTAAAAGCCAGCGAGCGC 59.902 61.111 6.78 6.78 42.33 5.92
2266 2542 1.573829 TTGGTAAAAGCCAGCGAGCG 61.574 55.000 0.00 0.00 40.01 5.03
2270 2546 2.793278 AAACTTGGTAAAAGCCAGCG 57.207 45.000 0.00 0.00 40.01 5.18
2278 2554 5.650266 TCTCTTGCACAGAAAACTTGGTAAA 59.350 36.000 0.00 0.00 0.00 2.01
2279 2555 5.189928 TCTCTTGCACAGAAAACTTGGTAA 58.810 37.500 0.00 0.00 0.00 2.85
2283 2559 6.069684 AGAATCTCTTGCACAGAAAACTTG 57.930 37.500 0.00 0.00 0.00 3.16
2308 2584 1.581912 CATCATTCACGCGCACAGC 60.582 57.895 5.73 0.00 43.95 4.40
2317 2593 3.760684 AGAGGAAACCAAGCATCATTCAC 59.239 43.478 0.00 0.00 0.00 3.18
2321 2603 4.410099 TCAAAGAGGAAACCAAGCATCAT 58.590 39.130 0.00 0.00 0.00 2.45
2328 2610 4.952957 TGTGTTCATCAAAGAGGAAACCAA 59.047 37.500 0.00 0.00 34.20 3.67
2336 2618 4.741676 GCAAAAGGTGTGTTCATCAAAGAG 59.258 41.667 0.00 0.00 0.00 2.85
2340 2622 4.462508 TTGCAAAAGGTGTGTTCATCAA 57.537 36.364 0.00 0.00 0.00 2.57
2341 2623 4.370049 CATTGCAAAAGGTGTGTTCATCA 58.630 39.130 1.71 0.00 0.00 3.07
2344 2626 2.168106 AGCATTGCAAAAGGTGTGTTCA 59.832 40.909 11.91 0.00 0.00 3.18
2348 2630 3.921119 TCTAGCATTGCAAAAGGTGTG 57.079 42.857 11.91 0.00 0.00 3.82
2361 2645 6.040247 TCGTAAATGAACGTCATTCTAGCAT 58.960 36.000 11.80 0.00 45.57 3.79
2362 2646 5.404096 TCGTAAATGAACGTCATTCTAGCA 58.596 37.500 11.80 0.00 45.57 3.49
2363 2647 5.944049 TCGTAAATGAACGTCATTCTAGC 57.056 39.130 11.80 4.77 45.57 3.42
2378 2662 6.982852 TCAGAGAGTTCAGAAGTTCGTAAAT 58.017 36.000 0.00 0.00 0.00 1.40
2383 2667 4.233789 CCTTCAGAGAGTTCAGAAGTTCG 58.766 47.826 8.30 0.00 42.33 3.95
2395 2682 1.155042 GCTTGCACACCTTCAGAGAG 58.845 55.000 0.00 0.00 0.00 3.20
2412 2699 3.019564 ACTTGCTTGTTTCTGTTCTGCT 58.980 40.909 0.00 0.00 0.00 4.24
2419 2706 6.310956 TGAATTTGACAACTTGCTTGTTTCTG 59.689 34.615 0.00 0.00 43.60 3.02
2433 2720 5.375773 TCCAGTGTGATCTGAATTTGACAA 58.624 37.500 0.00 0.00 37.61 3.18
2454 2741 2.181954 GATGCACATCCCTCTCATCC 57.818 55.000 0.00 0.00 31.76 3.51
2470 2757 3.807538 GCCTGCACTGCACGGATG 61.808 66.667 18.43 2.76 33.79 3.51
2498 2794 2.008268 GCAACCAGTGTGTGCTGCTT 62.008 55.000 0.00 0.00 35.28 3.91
2502 2798 1.386525 CCAAGCAACCAGTGTGTGCT 61.387 55.000 11.07 11.07 37.45 4.40
2503 2799 1.066257 CCAAGCAACCAGTGTGTGC 59.934 57.895 7.09 7.09 0.00 4.57
2505 2801 1.076777 AGCCAAGCAACCAGTGTGT 60.077 52.632 0.00 0.00 0.00 3.72
2511 2807 2.598394 GGAGCAGCCAAGCAACCA 60.598 61.111 0.00 0.00 36.85 3.67
2523 2820 2.203480 GGGGCACAGTTTGGAGCA 60.203 61.111 0.00 0.00 0.00 4.26
2538 2835 1.734137 CGACCTATGTCTCCGTGGG 59.266 63.158 0.00 0.00 39.47 4.61
2543 2840 1.068250 GCTGGCGACCTATGTCTCC 59.932 63.158 0.58 0.58 44.97 3.71
2548 2845 1.576356 GAAAGAGCTGGCGACCTATG 58.424 55.000 0.00 0.00 0.00 2.23
2556 2861 0.964358 AGTGCATGGAAAGAGCTGGC 60.964 55.000 0.00 0.00 0.00 4.85
2557 2862 1.093159 GAGTGCATGGAAAGAGCTGG 58.907 55.000 0.00 0.00 0.00 4.85
2608 2921 7.515643 CAGGTTCTTGTACGTACCAAAATAAG 58.484 38.462 22.43 16.84 33.02 1.73
2612 2925 3.560896 GCAGGTTCTTGTACGTACCAAAA 59.439 43.478 22.43 9.71 33.02 2.44
2619 2935 3.470645 AGAAAGCAGGTTCTTGTACGT 57.529 42.857 0.00 0.00 34.03 3.57
2621 2937 7.100409 AGAGATAAGAAAGCAGGTTCTTGTAC 58.900 38.462 16.14 9.68 45.33 2.90
2622 2938 7.246171 AGAGATAAGAAAGCAGGTTCTTGTA 57.754 36.000 16.14 2.76 45.33 2.41
2623 2939 6.120507 AGAGATAAGAAAGCAGGTTCTTGT 57.879 37.500 16.14 11.50 45.33 3.16
2624 2940 7.327214 ACTAGAGATAAGAAAGCAGGTTCTTG 58.673 38.462 16.14 4.68 45.33 3.02
2626 2942 7.837187 AGTACTAGAGATAAGAAAGCAGGTTCT 59.163 37.037 0.00 0.00 39.60 3.01
2630 2946 6.015772 GGGAGTACTAGAGATAAGAAAGCAGG 60.016 46.154 0.00 0.00 0.00 4.85
2649 2965 7.202066 GCCTTGTATAAGTAAATGGAGGGAGTA 60.202 40.741 0.00 0.00 31.80 2.59
2653 2969 5.070685 GGCCTTGTATAAGTAAATGGAGGG 58.929 45.833 0.00 0.00 31.80 4.30
2654 2970 5.531287 GTGGCCTTGTATAAGTAAATGGAGG 59.469 44.000 3.32 0.00 31.80 4.30
2655 2971 6.357367 AGTGGCCTTGTATAAGTAAATGGAG 58.643 40.000 3.32 0.00 31.80 3.86
2656 2972 6.321821 AGTGGCCTTGTATAAGTAAATGGA 57.678 37.500 3.32 0.00 31.80 3.41
2657 2973 7.936847 TCATAGTGGCCTTGTATAAGTAAATGG 59.063 37.037 3.32 0.00 31.80 3.16
2658 2974 8.902540 TCATAGTGGCCTTGTATAAGTAAATG 57.097 34.615 3.32 0.00 31.80 2.32
2659 2975 9.914834 TTTCATAGTGGCCTTGTATAAGTAAAT 57.085 29.630 3.32 0.00 31.80 1.40
2660 2976 9.914834 ATTTCATAGTGGCCTTGTATAAGTAAA 57.085 29.630 3.32 0.00 31.80 2.01
2668 2984 9.860650 AAACATATATTTCATAGTGGCCTTGTA 57.139 29.630 3.32 0.00 0.00 2.41
2669 2985 8.766994 AAACATATATTTCATAGTGGCCTTGT 57.233 30.769 3.32 0.00 0.00 3.16
2670 2986 9.467258 CAAAACATATATTTCATAGTGGCCTTG 57.533 33.333 3.32 0.00 0.00 3.61
2671 2987 8.143835 GCAAAACATATATTTCATAGTGGCCTT 58.856 33.333 3.32 0.00 0.00 4.35
2672 2988 7.287466 TGCAAAACATATATTTCATAGTGGCCT 59.713 33.333 3.32 0.00 0.00 5.19
2673 2989 7.432869 TGCAAAACATATATTTCATAGTGGCC 58.567 34.615 0.00 0.00 0.00 5.36
2674 2990 9.480053 AATGCAAAACATATATTTCATAGTGGC 57.520 29.630 0.00 0.00 38.34 5.01
2687 3003 9.801873 GTGGTCTTGTATAAATGCAAAACATAT 57.198 29.630 0.00 0.00 38.34 1.78
2688 3004 8.247562 GGTGGTCTTGTATAAATGCAAAACATA 58.752 33.333 0.00 0.00 38.34 2.29
2689 3005 7.096551 GGTGGTCTTGTATAAATGCAAAACAT 58.903 34.615 0.00 0.00 42.30 2.71
2690 3006 6.040955 TGGTGGTCTTGTATAAATGCAAAACA 59.959 34.615 0.00 0.00 32.12 2.83
2691 3007 6.451393 TGGTGGTCTTGTATAAATGCAAAAC 58.549 36.000 0.00 0.00 32.12 2.43
2692 3008 6.656632 TGGTGGTCTTGTATAAATGCAAAA 57.343 33.333 0.00 0.00 32.12 2.44
2693 3009 6.040955 TGTTGGTGGTCTTGTATAAATGCAAA 59.959 34.615 0.00 0.00 32.12 3.68
2694 3010 5.536538 TGTTGGTGGTCTTGTATAAATGCAA 59.463 36.000 0.00 0.00 0.00 4.08
2695 3011 5.073428 TGTTGGTGGTCTTGTATAAATGCA 58.927 37.500 0.00 0.00 0.00 3.96
2696 3012 5.183140 ACTGTTGGTGGTCTTGTATAAATGC 59.817 40.000 0.00 0.00 0.00 3.56
2697 3013 6.817765 ACTGTTGGTGGTCTTGTATAAATG 57.182 37.500 0.00 0.00 0.00 2.32
2698 3014 9.174166 GATTACTGTTGGTGGTCTTGTATAAAT 57.826 33.333 0.00 0.00 0.00 1.40
2699 3015 7.332430 CGATTACTGTTGGTGGTCTTGTATAAA 59.668 37.037 0.00 0.00 0.00 1.40
2700 3016 6.814644 CGATTACTGTTGGTGGTCTTGTATAA 59.185 38.462 0.00 0.00 0.00 0.98
2701 3017 6.153170 TCGATTACTGTTGGTGGTCTTGTATA 59.847 38.462 0.00 0.00 0.00 1.47
2702 3018 5.046878 TCGATTACTGTTGGTGGTCTTGTAT 60.047 40.000 0.00 0.00 0.00 2.29
2703 3019 4.281435 TCGATTACTGTTGGTGGTCTTGTA 59.719 41.667 0.00 0.00 0.00 2.41
2704 3020 3.070446 TCGATTACTGTTGGTGGTCTTGT 59.930 43.478 0.00 0.00 0.00 3.16
2705 3021 3.659786 TCGATTACTGTTGGTGGTCTTG 58.340 45.455 0.00 0.00 0.00 3.02
2706 3022 4.345859 TTCGATTACTGTTGGTGGTCTT 57.654 40.909 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.