AutoCloner

Multiple sequence alignment - TraesCS4B01G320800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4B01G320800	chr4B	100.000	3921	0	0	1	3921	612179609	612175689	0.000000e+00	7241.0
1	TraesCS4B01G320800	chr4B	98.322	596	9	1	1	596	612199331	612198737	0.000000e+00	1044.0
2	TraesCS4B01G320800	chr4B	81.532	666	81	22	1514	2171	612210371	612209740	9.720000e-141	510.0
3	TraesCS4B01G320800	chr4B	92.394	355	14	10	794	1137	612211080	612210728	9.790000e-136	494.0
4	TraesCS4B01G320800	chr4B	97.992	249	4	1	1089	1337	612210725	612210478	7.780000e-117	431.0
5	TraesCS4B01G320800	chr4B	88.889	270	18	6	2226	2492	612209738	612209478	4.890000e-84	322.0
6	TraesCS4B01G320800	chr4B	93.220	59	4	0	738	796	612212550	612212492	1.940000e-13	87.9
7	TraesCS4B01G320800	chr4D	92.557	1263	79	9	2669	3920	482253543	482252285	0.000000e+00	1797.0
8	TraesCS4B01G320800	chr4D	92.548	1087	47	14	1608	2668	482254657	482253579	0.000000e+00	1528.0
9	TraesCS4B01G320800	chr4D	86.413	920	59	34	598	1463	482255761	482254854	0.000000e+00	946.0
10	TraesCS4B01G320800	chr4D	83.446	1033	107	31	1505	2510	482360043	482359048	0.000000e+00	902.0
11	TraesCS4B01G320800	chr4D	90.358	643	38	18	714	1337	482360836	482360199	0.000000e+00	822.0
12	TraesCS4B01G320800	chr4D	91.870	123	8	2	1342	1463	482360162	482360041	1.870000e-38	171.0
13	TraesCS4B01G320800	chr4D	93.939	99	5	1	1505	1602	482254856	482254758	8.780000e-32	148.0
14	TraesCS4B01G320800	chr5A	91.274	1272	81	10	2669	3921	660252557	660253817	0.000000e+00	1707.0
15	TraesCS4B01G320800	chr5A	92.842	950	39	13	1736	2668	660251584	660252521	0.000000e+00	1351.0
16	TraesCS4B01G320800	chr5A	82.139	1019	119	28	1520	2510	660203587	660204570	0.000000e+00	815.0
17	TraesCS4B01G320800	chr5A	90.123	567	39	8	598	1152	660250111	660250672	0.000000e+00	721.0
18	TraesCS4B01G320800	chr5A	83.645	801	66	39	711	1456	660202789	660203579	0.000000e+00	693.0
19	TraesCS4B01G320800	chr5A	80.682	264	23	10	1227	1464	660250673	660250934	3.110000e-41	180.0
20	TraesCS4B01G320800	chr7B	97.483	596	15	0	1	596	210812796	210812201	0.000000e+00	1018.0
21	TraesCS4B01G320800	chr6B	97.483	596	15	0	1	596	626523214	626522619	0.000000e+00	1018.0
22	TraesCS4B01G320800	chr6B	97.162	599	16	1	2	599	47550826	47551424	0.000000e+00	1011.0
23	TraesCS4B01G320800	chr6B	96.980	596	18	0	1	596	626508038	626507443	0.000000e+00	1002.0
24	TraesCS4B01G320800	chr4A	97.479	595	15	0	2	596	671994547	671995141	0.000000e+00	1016.0
25	TraesCS4B01G320800	chr3B	97.315	596	16	0	1	596	751167644	751168239	0.000000e+00	1013.0
26	TraesCS4B01G320800	chr5B	96.980	596	18	0	1	596	94670435	94669840	0.000000e+00	1002.0
27	TraesCS4B01G320800	chr1B	96.985	597	17	1	1	596	622602139	622601543	0.000000e+00	1002.0
28	TraesCS4B01G320800	chr7A	84.211	190	29	1	2303	2492	15609779	15609967	2.410000e-42	183.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4B01G320800	chr4B	612175689	612179609	3920	True	7241.000000	7241	100.00000	1	3921	1	chr4B.!!$R1	3920
1	TraesCS4B01G320800	chr4B	612198737	612199331	594	True	1044.000000	1044	98.32200	1	596	1	chr4B.!!$R2	595
2	TraesCS4B01G320800	chr4B	612209478	612212550	3072	True	368.980000	510	90.80540	738	2492	5	chr4B.!!$R3	1754
3	TraesCS4B01G320800	chr4D	482252285	482255761	3476	True	1104.750000	1797	91.36425	598	3920	4	chr4D.!!$R1	3322
4	TraesCS4B01G320800	chr4D	482359048	482360836	1788	True	631.666667	902	88.55800	714	2510	3	chr4D.!!$R2	1796
5	TraesCS4B01G320800	chr5A	660250111	660253817	3706	False	989.750000	1707	88.73025	598	3921	4	chr5A.!!$F2	3323
6	TraesCS4B01G320800	chr5A	660202789	660204570	1781	False	754.000000	815	82.89200	711	2510	2	chr5A.!!$F1	1799
7	TraesCS4B01G320800	chr7B	210812201	210812796	595	True	1018.000000	1018	97.48300	1	596	1	chr7B.!!$R1	595
8	TraesCS4B01G320800	chr6B	626522619	626523214	595	True	1018.000000	1018	97.48300	1	596	1	chr6B.!!$R2	595
9	TraesCS4B01G320800	chr6B	47550826	47551424	598	False	1011.000000	1011	97.16200	2	599	1	chr6B.!!$F1	597
10	TraesCS4B01G320800	chr6B	626507443	626508038	595	True	1002.000000	1002	96.98000	1	596	1	chr6B.!!$R1	595
11	TraesCS4B01G320800	chr4A	671994547	671995141	594	False	1016.000000	1016	97.47900	2	596	1	chr4A.!!$F1	594
12	TraesCS4B01G320800	chr3B	751167644	751168239	595	False	1013.000000	1013	97.31500	1	596	1	chr3B.!!$F1	595
13	TraesCS4B01G320800	chr5B	94669840	94670435	595	True	1002.000000	1002	96.98000	1	596	1	chr5B.!!$R1	595
14	TraesCS4B01G320800	chr1B	622601543	622602139	596	True	1002.000000	1002	96.98500	1	596	1	chr1B.!!$R1	595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
735	737	5.021458	AGTCCGGTAGAAGGTTGAGAATTA	58.979	41.667	0.0	0.0	0.0	1.40	F
1073	2501	0.179113	CTGCAAACAACAAGCGGGTT	60.179	50.000	0.0	0.0	0.0	4.11	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2301	4433	0.106419	TTGTTCCTTCCTGCGGGTTT	60.106	50.0	12.43	0.0	0.00	3.27	R
2960	5148	0.104934	ATGGCTACTCTGGTAGGGGG	60.105	60.0	5.51	0.0	43.99	5.40	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
596	598	8.933955	CGTAGTAATTTGCTCATATTTTCAACG	58.066	33.333	0.00	0.00	0.00	4.10
649	651	7.474190	CAACCATGCAAGAAAACAGAAATTTT	58.526	30.769	0.00	0.00	34.46	1.82
676	678	7.974482	ACCACTATGTACTAAAAACCTGAAC	57.026	36.000	0.00	0.00	0.00	3.18
735	737	5.021458	AGTCCGGTAGAAGGTTGAGAATTA	58.979	41.667	0.00	0.00	0.00	1.40
736	738	5.482878	AGTCCGGTAGAAGGTTGAGAATTAA	59.517	40.000	0.00	0.00	0.00	1.40
746	748	8.588472	AGAAGGTTGAGAATTAATTTTCCTTGG	58.412	33.333	14.32	0.00	33.70	3.61
1073	2501	0.179113	CTGCAAACAACAAGCGGGTT	60.179	50.000	0.00	0.00	0.00	4.11
1223	2752	1.604593	GGTGGCAGCAACAGGTGAT	60.605	57.895	12.58	0.00	32.66	3.06
1224	2753	0.322456	GGTGGCAGCAACAGGTGATA	60.322	55.000	12.58	0.00	32.66	2.15
1225	2754	1.683011	GGTGGCAGCAACAGGTGATAT	60.683	52.381	12.58	0.00	32.66	1.63
1226	2755	2.094675	GTGGCAGCAACAGGTGATATT	58.905	47.619	0.00	0.00	32.66	1.28
1334	2902	6.989169	AGTGAATAGATGAACTTATGAGGTGC	59.011	38.462	0.00	0.00	0.00	5.01
1336	2904	2.555199	AGATGAACTTATGAGGTGCGC	58.445	47.619	0.00	0.00	0.00	6.09
1362	2930	2.869192	GCTACTACTGCCTTTCATCAGC	59.131	50.000	0.00	0.00	33.80	4.26
1374	2945	5.809051	GCCTTTCATCAGCAAGAAAAATAGG	59.191	40.000	0.00	0.00	33.75	2.57
1386	2957	6.294508	GCAAGAAAAATAGGGCAGTTGTTAGA	60.295	38.462	0.00	0.00	0.00	2.10
1536	3112	7.553334	AGAGGTGTAGCTCAATTTATCGTTAA	58.447	34.615	12.97	0.00	0.00	2.01
1731	3411	5.559148	AGCTGGAGAAAGAAGAAAGAAGA	57.441	39.130	0.00	0.00	0.00	2.87
1734	3414	5.529060	GCTGGAGAAAGAAGAAAGAAGAACA	59.471	40.000	0.00	0.00	0.00	3.18
1746	3845	4.640771	AAGAAGAACAGGCTGTTGGATA	57.359	40.909	35.57	0.00	41.28	2.59
1796	3895	9.190317	GACTTACCCAAGATAAATTCTGGAAAT	57.810	33.333	0.00	0.00	33.93	2.17
1861	3960	1.448922	CCGCCGTTCCAAACTTCCAA	61.449	55.000	0.00	0.00	0.00	3.53
1862	3961	0.596082	CGCCGTTCCAAACTTCCAAT	59.404	50.000	0.00	0.00	0.00	3.16
1908	4013	1.564348	TCTAGGCATGAAGGGGGAAAC	59.436	52.381	0.00	0.00	0.00	2.78
2009	4117	4.115516	AGCACAATACAAGATCGTAGCAG	58.884	43.478	0.00	0.00	0.00	4.24
2050	4159	7.431249	ACTTGTTCATTCAAAGTCTCTACGTA	58.569	34.615	0.00	0.00	0.00	3.57
2179	4297	1.509548	CCATTTGGAGGACCCCCACT	61.510	60.000	0.00	0.00	37.39	4.00
2567	4719	9.378551	ACATGAGAACTTTTAAAAGGAAAAACC	57.621	29.630	27.23	12.54	40.31	3.27
2649	4801	4.041198	ACAACGTCATCTTTTCCCCTCTTA	59.959	41.667	0.00	0.00	0.00	2.10
2746	4933	1.972660	GCATCTCCCGGCCTTGTACT	61.973	60.000	0.00	0.00	0.00	2.73
2810	4998	4.247794	TGTTTTGTTCAGACACGTAACG	57.752	40.909	0.00	0.00	34.98	3.18
2813	5001	3.910862	TTGTTCAGACACGTAACGTTG	57.089	42.857	11.99	0.00	38.32	4.10
2960	5148	4.379813	CGCATAGATATTGCAATTCCCCAC	60.380	45.833	18.75	1.85	40.14	4.61
2969	5157	1.167283	AATTCCCCACCCCCTACCA	59.833	57.895	0.00	0.00	0.00	3.25
3007	5195	0.819666	GGCCGAATTCTGTCATCCCC	60.820	60.000	3.52	0.00	0.00	4.81
3052	5240	4.003584	TGGGCCACTACTATAGAAACCT	57.996	45.455	0.00	0.00	0.00	3.50
3054	5242	5.531198	TGGGCCACTACTATAGAAACCTTA	58.469	41.667	0.00	0.00	0.00	2.69
3055	5243	5.364735	TGGGCCACTACTATAGAAACCTTAC	59.635	44.000	0.00	0.00	0.00	2.34
3056	5244	5.221601	GGGCCACTACTATAGAAACCTTACC	60.222	48.000	4.39	0.00	0.00	2.85
3058	5246	5.364735	GCCACTACTATAGAAACCTTACCCA	59.635	44.000	6.78	0.00	0.00	4.51
3066	5263	4.665833	AGAAACCTTACCCAAAAACTGC	57.334	40.909	0.00	0.00	0.00	4.40
3077	5274	4.101430	ACCCAAAAACTGCATTGTTCATCT	59.899	37.500	0.00	0.00	0.00	2.90
3104	5301	9.737427	AACTCGTCTTAGATACAATAATCACAG	57.263	33.333	0.00	0.00	0.00	3.66
3166	5363	6.401047	AGCATTCTGACCATTTATCCAATG	57.599	37.500	0.00	0.00	41.99	2.82
3413	5610	4.881019	ATGAAGAGTGAATAGGGATCCG	57.119	45.455	5.45	0.00	0.00	4.18
3419	5616	4.105057	AGAGTGAATAGGGATCCGTAGAGT	59.895	45.833	18.49	8.63	0.00	3.24
3430	5627	0.100682	CCGTAGAGTCCACATGTCGG	59.899	60.000	0.00	0.00	0.00	4.79
3447	5644	1.679153	TCGGCGATTAGTGCATAGTCA	59.321	47.619	4.99	0.00	0.00	3.41
3503	5701	1.063942	TGGTGCCCTAAGAGATCTCGA	60.064	52.381	16.97	8.48	34.09	4.04
3534	5732	3.527253	AGGGTGACATGGTGATTTATCCA	59.473	43.478	0.00	0.00	38.14	3.41
3535	5733	4.017591	AGGGTGACATGGTGATTTATCCAA	60.018	41.667	0.00	0.00	37.27	3.53
3547	5749	4.961099	TGATTTATCCAATTCATGCCCACA	59.039	37.500	0.00	0.00	0.00	4.17
3548	5750	5.424573	TGATTTATCCAATTCATGCCCACAA	59.575	36.000	0.00	0.00	0.00	3.33
3571	5773	2.778270	ACCTATTTTGGGAGTCTAGGGC	59.222	50.000	6.00	0.00	34.50	5.19
3574	5776	0.545787	TTTTGGGAGTCTAGGGCCGA	60.546	55.000	0.00	0.00	0.00	5.54
3578	5780	1.149288	TGGGAGTCTAGGGCCGAATAT	59.851	52.381	0.00	0.00	0.00	1.28
3614	5816	2.768045	TCCTAGGCTCGGGACACA	59.232	61.111	2.96	0.00	0.00	3.72
3662	5864	0.115152	TCTCCTCTGCCACCTCTTCA	59.885	55.000	0.00	0.00	0.00	3.02
3689	5891	6.269769	CCCAATGGCTTATATACACCCAAAAT	59.730	38.462	0.00	0.00	0.00	1.82
3696	5898	9.569122	GGCTTATATACACCCAAAATCTTTCTA	57.431	33.333	0.00	0.00	0.00	2.10
3722	5924	7.000472	TGATTTAAATTGCAATTTTCCACCCA	59.000	30.769	35.18	23.25	39.24	4.51
3725	5927	1.115467	TTGCAATTTTCCACCCACGT	58.885	45.000	0.00	0.00	0.00	4.49
3738	5945	1.134521	ACCCACGTCGTGATGCATTAT	60.135	47.619	26.53	0.00	35.23	1.28
3765	5972	4.152045	GCTATCCAATTCAATGCTCTCTCG	59.848	45.833	0.00	0.00	0.00	4.04
3775	5982	0.544357	TGCTCTCTCGGAGGGGAAAA	60.544	55.000	4.79	0.00	42.08	2.29
3776	5983	0.833949	GCTCTCTCGGAGGGGAAAAT	59.166	55.000	4.79	0.00	42.08	1.82
3777	5984	1.202592	GCTCTCTCGGAGGGGAAAATC	60.203	57.143	4.79	0.00	42.08	2.17
3787	5994	4.733165	GGAGGGGAAAATCATCATCATCA	58.267	43.478	0.00	0.00	0.00	3.07
3833	6040	3.877559	CTCCCAAGATAATGTGTGAGCA	58.122	45.455	0.00	0.00	0.00	4.26

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
649	651	7.737869	TCAGGTTTTTAGTACATAGTGGTTGA	58.262	34.615	0.00	0.00	0.00	3.18
670	672	5.880054	AAATTCGATGTAGGTTGTTCAGG	57.120	39.130	0.00	0.00	0.00	3.86
676	678	5.459107	CCGACTCTAAATTCGATGTAGGTTG	59.541	44.000	0.00	0.00	37.43	3.77
725	727	9.764363	AAGTTCCAAGGAAAATTAATTCTCAAC	57.236	29.630	2.55	0.00	35.75	3.18
746	748	7.062255	GCTGCACTTTGTAAATTATCCAAGTTC	59.938	37.037	0.00	0.00	0.00	3.01
959	2387	4.295051	TGCGCTTTTTGGTTTATCTTGAC	58.705	39.130	9.73	0.00	0.00	3.18
1055	2483	1.103803	TAACCCGCTTGTTGTTTGCA	58.896	45.000	0.00	0.00	0.00	4.08
1073	2501	0.741915	TCTCTGCGTGTGTGTGTGTA	59.258	50.000	0.00	0.00	0.00	2.90
1171	2700	3.241530	TGAACCTGCTCCGCCACT	61.242	61.111	0.00	0.00	0.00	4.00
1336	2904	4.554363	AGGCAGTAGTAGCGCGCG	62.554	66.667	28.44	28.44	0.00	6.86
1362	2930	7.214467	TCTAACAACTGCCCTATTTTTCTTG	57.786	36.000	0.00	0.00	0.00	3.02
1374	2945	3.338249	TGCTCTCAATCTAACAACTGCC	58.662	45.455	0.00	0.00	0.00	4.85
1386	2957	1.589993	CGCGTCCGATGCTCTCAAT	60.590	57.895	10.81	0.00	36.29	2.57
1498	3074	9.515226	TGAGCTACACCTCTTTTGTATTATTTT	57.485	29.630	0.00	0.00	33.02	1.82
1499	3075	9.515226	TTGAGCTACACCTCTTTTGTATTATTT	57.485	29.630	0.00	0.00	33.02	1.40
1500	3076	9.686683	ATTGAGCTACACCTCTTTTGTATTATT	57.313	29.630	0.00	0.00	33.02	1.40
1501	3077	9.686683	AATTGAGCTACACCTCTTTTGTATTAT	57.313	29.630	0.00	0.00	33.02	1.28
1502	3078	9.515226	AAATTGAGCTACACCTCTTTTGTATTA	57.485	29.630	0.00	0.00	33.02	0.98
1503	3079	8.409358	AAATTGAGCTACACCTCTTTTGTATT	57.591	30.769	0.00	0.00	33.02	1.89
1536	3112	5.255710	CTGACAACAGGATAACGAGATCT	57.744	43.478	0.00	0.00	40.14	2.75
1599	3176	7.803659	GGTGTTTTTAAGATCACTGCTTTCTAC	59.196	37.037	7.04	0.00	0.00	2.59
1650	3322	9.855021	AAATCGACGAATCCAAATTCTAAATTT	57.145	25.926	0.00	0.00	39.36	1.82
1656	3328	6.086222	CACAAAATCGACGAATCCAAATTCT	58.914	36.000	0.00	0.00	39.36	2.40
1657	3329	5.286082	CCACAAAATCGACGAATCCAAATTC	59.714	40.000	0.00	0.00	38.34	2.17
1664	3336	3.259064	TCTCCCACAAAATCGACGAATC	58.741	45.455	0.00	0.00	0.00	2.52
1668	3340	2.683968	TCTTCTCCCACAAAATCGACG	58.316	47.619	0.00	0.00	0.00	5.12
1731	3411	5.700402	AGACTAATATCCAACAGCCTGTT	57.300	39.130	3.74	3.74	42.08	3.16
1734	3414	7.445945	GTCATTAGACTAATATCCAACAGCCT	58.554	38.462	7.40	0.00	41.64	4.58
1746	3845	6.070424	TCGGTTTTCTGGGTCATTAGACTAAT	60.070	38.462	1.63	1.63	44.36	1.73
1796	3895	8.735692	TTACATGACATCTCATTTTCTATGCA	57.264	30.769	0.00	0.00	34.65	3.96
1861	3960	6.097554	TCCACATGTTTTTCCTTTGTGTGTAT	59.902	34.615	0.00	0.00	36.75	2.29
1862	3961	5.419155	TCCACATGTTTTTCCTTTGTGTGTA	59.581	36.000	0.00	0.00	36.75	2.90
2026	4135	6.771188	ACGTAGAGACTTTGAATGAACAAG	57.229	37.500	0.00	0.00	0.00	3.16
2029	4138	8.381387	GGAAATACGTAGAGACTTTGAATGAAC	58.619	37.037	0.08	0.00	0.00	3.18
2050	4159	5.131067	GCCCCGTCTAGAATAAAAGGAAAT	58.869	41.667	0.00	0.00	0.00	2.17
2115	4224	3.777106	ACGATCCAGGCATTATGACAT	57.223	42.857	0.00	0.00	0.00	3.06
2116	4225	3.134623	AGAACGATCCAGGCATTATGACA	59.865	43.478	0.00	0.00	0.00	3.58
2127	4236	4.572389	CCCAAGAATACAAGAACGATCCAG	59.428	45.833	0.00	0.00	0.00	3.86
2230	4348	9.942850	ATTAAGCTTATGTTTGCCAGTAAAAAT	57.057	25.926	7.08	0.00	0.00	1.82
2301	4433	0.106419	TTGTTCCTTCCTGCGGGTTT	60.106	50.000	12.43	0.00	0.00	3.27
2425	4557	1.328680	CTTTCCATCGTCGGATTGCAG	59.671	52.381	0.00	0.00	34.19	4.41
2622	4774	4.760204	AGGGGAAAAGATGACGTTGTTAAG	59.240	41.667	0.00	0.00	0.00	1.85
2637	4789	3.825908	ATTGCCTGTAAGAGGGGAAAA	57.174	42.857	0.00	0.00	43.07	2.29
2649	4801	2.308570	TCCATCACCAGTAATTGCCTGT	59.691	45.455	6.30	0.00	0.00	4.00
2685	4872	4.222366	TGACAAAATTATGGATGGCAAGCA	59.778	37.500	0.00	0.00	0.00	3.91
2960	5148	0.104934	ATGGCTACTCTGGTAGGGGG	60.105	60.000	5.51	0.00	43.99	5.40
2988	5176	0.819666	GGGGATGACAGAATTCGGCC	60.820	60.000	5.43	0.00	0.00	6.13
3007	5195	3.071874	TGGGTTCTTAGTCTTGGCATG	57.928	47.619	0.00	0.00	0.00	4.06
3035	5223	7.427989	TTGGGTAAGGTTTCTATAGTAGTGG	57.572	40.000	0.00	0.00	0.00	4.00
3052	5240	5.344743	TGAACAATGCAGTTTTTGGGTAA	57.655	34.783	3.04	0.00	0.00	2.85
3054	5242	3.902881	TGAACAATGCAGTTTTTGGGT	57.097	38.095	3.04	0.00	0.00	4.51
3055	5243	4.634199	AGATGAACAATGCAGTTTTTGGG	58.366	39.130	3.04	0.00	0.00	4.12
3056	5244	6.925165	AGTTAGATGAACAATGCAGTTTTTGG	59.075	34.615	3.04	0.00	40.86	3.28
3058	5246	6.857964	CGAGTTAGATGAACAATGCAGTTTTT	59.142	34.615	0.00	0.00	40.86	1.94
3066	5263	8.864069	ATCTAAGACGAGTTAGATGAACAATG	57.136	34.615	17.58	0.00	44.57	2.82
3104	5301	2.420022	ACGATGTTGCATCTAAGTTGCC	59.580	45.455	7.41	0.00	39.39	4.52
3111	5308	6.573434	ACTCATAGAAACGATGTTGCATCTA	58.427	36.000	7.41	0.00	0.00	1.98
3321	5518	0.458669	TTATCGACCGACAAGCCTCC	59.541	55.000	0.00	0.00	0.00	4.30
3383	5580	8.992349	TCCCTATTCACTCTTCATTCAAATAGA	58.008	33.333	0.00	0.00	30.43	1.98
3413	5610	0.525668	CGCCGACATGTGGACTCTAC	60.526	60.000	9.73	0.00	0.00	2.59
3419	5616	0.821517	ACTAATCGCCGACATGTGGA	59.178	50.000	9.73	0.00	0.00	4.02
3430	5627	5.914085	AAGATTGACTATGCACTAATCGC	57.086	39.130	0.00	0.00	34.01	4.58
3491	5689	5.651576	CCCTCATCATCATCGAGATCTCTTA	59.348	44.000	20.26	8.95	33.72	2.10
3503	5701	2.781757	ACCATGTCACCCTCATCATCAT	59.218	45.455	0.00	0.00	0.00	2.45
3534	5732	5.760484	AATAGGTTTTGTGGGCATGAATT	57.240	34.783	0.00	0.00	0.00	2.17
3535	5733	5.760484	AAATAGGTTTTGTGGGCATGAAT	57.240	34.783	0.00	0.00	0.00	2.57
3547	5749	5.810034	GCCCTAGACTCCCAAAATAGGTTTT	60.810	44.000	0.00	0.00	38.03	2.43
3548	5750	4.325109	GCCCTAGACTCCCAAAATAGGTTT	60.325	45.833	0.00	0.00	32.69	3.27
3564	5766	0.888619	CGAGCATATTCGGCCCTAGA	59.111	55.000	0.00	0.00	36.95	2.43
3567	5769	2.031163	GCGAGCATATTCGGCCCT	59.969	61.111	0.00	0.00	40.79	5.19
3571	5773	2.320587	GCCAGGCGAGCATATTCGG	61.321	63.158	0.00	0.00	40.79	4.30
3590	5792	2.659897	CGAGCCTAGGACGCATGC	60.660	66.667	14.75	7.91	0.00	4.06
3614	5816	2.547595	CCCCACACCCCCTCAACAT	61.548	63.158	0.00	0.00	0.00	2.71
3696	5898	7.668886	TGGGTGGAAAATTGCAATTTAAATCAT	59.331	29.630	31.87	18.54	37.62	2.45
3707	5909	0.671251	GACGTGGGTGGAAAATTGCA	59.329	50.000	0.00	0.00	0.00	4.08
3722	5924	2.473816	CCTCATAATGCATCACGACGT	58.526	47.619	0.00	0.00	0.00	4.34
3725	5927	2.916702	AGCCTCATAATGCATCACGA	57.083	45.000	0.00	0.00	0.00	4.35
3738	5945	4.139786	GAGCATTGAATTGGATAGCCTCA	58.860	43.478	0.00	0.00	34.31	3.86
3765	5972	4.733165	TGATGATGATGATTTTCCCCTCC	58.267	43.478	0.00	0.00	0.00	4.30
3775	5982	9.336171	GATGAAGATGATGATGATGATGATGAT	57.664	33.333	0.00	0.00	0.00	2.45
3776	5983	7.492669	CGATGAAGATGATGATGATGATGATGA	59.507	37.037	0.00	0.00	0.00	2.92
3777	5984	7.492669	TCGATGAAGATGATGATGATGATGATG	59.507	37.037	0.00	0.00	0.00	3.07
3787	5994	6.073167	GCAACAATCTCGATGAAGATGATGAT	60.073	38.462	0.00	0.00	36.14	2.45
3863	6071	2.533266	ATTAGGTCATGGCTACTGCG	57.467	50.000	0.00	0.00	40.82	5.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.