Multiple sequence alignment - TraesCS4B01G320700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G320700 chr4B 100.000 2885 0 0 1 2885 612027016 612029900 0.000000e+00 5328.0
1 TraesCS4B01G320700 chr4B 93.846 195 7 5 2544 2734 612029412 612029605 3.640000e-74 289.0
2 TraesCS4B01G320700 chr4B 93.846 195 7 5 2397 2590 612029559 612029749 3.640000e-74 289.0
3 TraesCS4B01G320700 chr4B 95.455 66 1 2 2675 2740 612029463 612029526 1.410000e-18 104.0
4 TraesCS4B01G320700 chr4B 95.455 66 1 2 2675 2740 612029610 612029673 1.410000e-18 104.0
5 TraesCS4B01G320700 chr4B 95.455 66 1 2 2448 2511 612029690 612029755 1.410000e-18 104.0
6 TraesCS4B01G320700 chr4B 95.455 66 1 2 2595 2658 612029690 612029755 1.410000e-18 104.0
7 TraesCS4B01G320700 chr4D 92.289 2931 126 44 1 2874 482235326 482238213 0.000000e+00 4069.0
8 TraesCS4B01G320700 chr4D 84.058 207 22 8 2543 2740 482237705 482237909 3.790000e-44 189.0
9 TraesCS4B01G320700 chr4D 87.261 157 13 6 2589 2740 482237839 482237993 3.820000e-39 172.0
10 TraesCS4B01G320700 chr4D 80.162 247 23 17 2442 2664 482237839 482238083 8.270000e-36 161.0
11 TraesCS4B01G320700 chr4D 97.849 93 1 1 2757 2848 506979834 506979742 2.980000e-35 159.0
12 TraesCS4B01G320700 chr4D 83.117 154 16 10 2442 2590 482237923 482238071 6.490000e-27 132.0
13 TraesCS4B01G320700 chr4D 90.909 77 6 1 2442 2517 482238007 482238083 5.090000e-18 102.0
14 TraesCS4B01G320700 chr4D 91.667 72 3 3 2670 2740 482237756 482237825 2.370000e-16 97.1
15 TraesCS4B01G320700 chr5A 93.200 2559 102 29 1 2505 660397684 660395144 0.000000e+00 3696.0
16 TraesCS4B01G320700 chr5A 86.911 191 7 9 2670 2860 660395205 660395033 6.310000e-47 198.0
17 TraesCS4B01G320700 chr5A 97.826 92 1 1 2755 2845 502580686 502580777 1.070000e-34 158.0
18 TraesCS4B01G320700 chr5A 89.623 106 9 2 2547 2652 660395247 660395144 1.800000e-27 134.0
19 TraesCS4B01G320700 chr5B 95.098 102 3 2 2749 2848 477422839 477422940 2.980000e-35 159.0
20 TraesCS4B01G320700 chr1B 98.889 90 0 1 2755 2843 119050027 119050116 2.980000e-35 159.0
21 TraesCS4B01G320700 chr1B 96.842 95 1 2 2757 2850 555636607 555636700 1.070000e-34 158.0
22 TraesCS4B01G320700 chr5D 97.826 92 1 1 2755 2845 397026997 397027088 1.070000e-34 158.0
23 TraesCS4B01G320700 chr2D 98.876 89 0 1 2757 2845 371161173 371161086 1.070000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G320700 chr4B 612027016 612029900 2884 False 903.142857 5328 95.644571 1 2885 7 chr4B.!!$F1 2884
1 TraesCS4B01G320700 chr4D 482235326 482238213 2887 False 703.157143 4069 87.066143 1 2874 7 chr4D.!!$F1 2873
2 TraesCS4B01G320700 chr5A 660395033 660397684 2651 True 1342.666667 3696 89.911333 1 2860 3 chr5A.!!$R1 2859

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
922 946 2.012673 GCAGCTCATCTAACCCACAAG 58.987 52.381 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1955 2006 0.177604 CACAGCCAGGGATCTCACTC 59.822 60.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 6.115446 CCAAGCTGTCTGACTATGGATTTAA 58.885 40.000 9.51 0.00 0.00 1.52
45 46 6.969473 GTCTGACTATGGATTTAAAAAGCTGC 59.031 38.462 0.00 0.00 0.00 5.25
146 147 4.582656 AGCTTGAGATACAGCGATAAGAGT 59.417 41.667 0.00 0.00 0.00 3.24
161 162 7.596995 AGCGATAAGAGTGATGTATTTAGCTTC 59.403 37.037 0.00 0.00 0.00 3.86
292 293 2.672961 AAATCGGACTGCTTCGATCA 57.327 45.000 0.00 0.00 44.10 2.92
401 402 3.965258 ATGGCGGAGGTGGTGCAA 61.965 61.111 0.00 0.00 0.00 4.08
758 778 6.101005 TCTGATTGGGAAATGGAAACCTTTTT 59.899 34.615 0.00 0.00 32.25 1.94
793 814 4.944317 AGACCTAAGCACTCCTTTATTTGC 59.056 41.667 0.00 0.00 34.95 3.68
836 857 4.640771 ACTGTCCAATGGTGTATCAACT 57.359 40.909 0.00 0.00 0.00 3.16
837 858 4.985538 ACTGTCCAATGGTGTATCAACTT 58.014 39.130 0.00 0.00 0.00 2.66
838 859 5.385198 ACTGTCCAATGGTGTATCAACTTT 58.615 37.500 0.00 0.00 0.00 2.66
922 946 2.012673 GCAGCTCATCTAACCCACAAG 58.987 52.381 0.00 0.00 0.00 3.16
943 967 7.233553 CACAAGATCCTCTCCTACATATACCAA 59.766 40.741 0.00 0.00 0.00 3.67
1026 1054 1.153667 GGAGTTCGAGCTGCCTGAG 60.154 63.158 6.48 0.00 0.00 3.35
1074 1102 2.478539 GCAGATTTCGGTGCCATTTCTC 60.479 50.000 0.00 0.00 33.29 2.87
1182 1210 1.009675 GCTTGTTGTCAGTGTGCCG 60.010 57.895 0.00 0.00 0.00 5.69
1245 1273 1.301716 ACGCTTTCATGCACCGTCT 60.302 52.632 0.00 0.00 0.00 4.18
1434 1462 1.226323 CGCCTGGTACTCGTTCTCG 60.226 63.158 0.00 0.00 38.55 4.04
1437 1465 0.450983 CCTGGTACTCGTTCTCGGAC 59.549 60.000 0.00 0.00 37.69 4.79
1470 1498 2.030562 AACTCCAGCGGGAACACG 59.969 61.111 7.12 0.00 44.38 4.49
1473 1501 4.351938 TCCAGCGGGAACACGTCG 62.352 66.667 1.89 0.00 41.32 5.12
1695 1726 1.418637 TCCTCCGTGGTAATAATGCCC 59.581 52.381 0.00 0.00 37.07 5.36
1727 1764 5.362556 TTTACACTGAGCTTTGCTTGATC 57.637 39.130 0.00 0.00 39.88 2.92
1778 1815 2.180204 GGACACGTTGCACTGTGCT 61.180 57.895 30.43 11.79 45.31 4.40
1793 1830 2.749441 GCTCCCAACTGCTCCTGC 60.749 66.667 0.00 0.00 40.20 4.85
1816 1853 1.031235 TGGGCAGTGATGTGTTTGTG 58.969 50.000 0.00 0.00 0.00 3.33
1887 1924 9.581099 AAGTTTTTAATTGTGTGTTCTTAGTGG 57.419 29.630 0.00 0.00 0.00 4.00
1889 1926 5.699097 TTAATTGTGTGTTCTTAGTGGGC 57.301 39.130 0.00 0.00 0.00 5.36
1952 2003 1.354858 GTGTGCATGTGCGTGTGAA 59.645 52.632 0.00 0.00 45.83 3.18
1953 2004 0.658244 GTGTGCATGTGCGTGTGAAG 60.658 55.000 0.00 0.00 45.83 3.02
1954 2005 1.727022 GTGCATGTGCGTGTGAAGC 60.727 57.895 0.00 0.00 45.83 3.86
1955 2006 2.500369 GCATGTGCGTGTGAAGCG 60.500 61.111 0.00 0.00 37.44 4.68
1956 2007 2.953605 GCATGTGCGTGTGAAGCGA 61.954 57.895 0.00 0.00 37.44 4.93
2022 2073 0.319083 TGGATTGCTTGCTTGCTTGG 59.681 50.000 3.47 0.00 0.00 3.61
2023 2074 0.390735 GGATTGCTTGCTTGCTTGGG 60.391 55.000 3.47 0.00 0.00 4.12
2027 2082 1.288127 GCTTGCTTGCTTGGGAGTG 59.712 57.895 0.00 0.00 0.00 3.51
2064 2123 2.357517 GCGTGCTGGTGCTGTACT 60.358 61.111 0.00 0.00 40.48 2.73
2065 2124 2.671177 GCGTGCTGGTGCTGTACTG 61.671 63.158 0.00 0.00 40.48 2.74
2066 2125 1.300931 CGTGCTGGTGCTGTACTGT 60.301 57.895 1.46 0.00 40.48 3.55
2116 2175 1.804748 CTTGTACTCTTTTCCCGGTGC 59.195 52.381 0.00 0.00 0.00 5.01
2148 2207 8.567948 TCAAGATAAACAAACACTGGATTTCTC 58.432 33.333 0.00 0.00 0.00 2.87
2154 2215 4.336433 ACAAACACTGGATTTCTCTGTGTG 59.664 41.667 7.34 0.00 38.26 3.82
2163 2224 2.988010 TTCTCTGTGTGTCAGCTTGT 57.012 45.000 0.00 0.00 43.32 3.16
2165 2226 2.826428 TCTCTGTGTGTCAGCTTGTTC 58.174 47.619 0.00 0.00 43.32 3.18
2169 2230 2.679837 CTGTGTGTCAGCTTGTTCTTGT 59.320 45.455 0.00 0.00 37.36 3.16
2171 2232 4.257731 TGTGTGTCAGCTTGTTCTTGTTA 58.742 39.130 0.00 0.00 0.00 2.41
2174 2235 4.941263 TGTGTCAGCTTGTTCTTGTTACTT 59.059 37.500 0.00 0.00 0.00 2.24
2175 2236 5.064707 TGTGTCAGCTTGTTCTTGTTACTTC 59.935 40.000 0.00 0.00 0.00 3.01
2176 2237 5.294552 GTGTCAGCTTGTTCTTGTTACTTCT 59.705 40.000 0.00 0.00 0.00 2.85
2220 2281 4.862350 TCTTGTTCATTTGTGCATCTGTG 58.138 39.130 0.00 0.00 0.00 3.66
2310 2375 9.489084 TGTTAAGGAGAATGTATATATGCACAC 57.511 33.333 5.58 3.73 0.00 3.82
2398 2464 3.842732 GCCCAACGCTAAATTGTAGTT 57.157 42.857 0.00 0.00 0.00 2.24
2446 2512 9.498039 AAAGGGAATGATGATTAGAAAAAGGAT 57.502 29.630 0.00 0.00 0.00 3.24
2550 2624 1.334869 CAGACACAAGGCTGTTGGAAC 59.665 52.381 0.00 0.00 31.64 3.62
2553 2627 2.427095 GACACAAGGCTGTTGGAACTTT 59.573 45.455 0.00 0.00 31.64 2.66
2554 2628 2.831526 ACACAAGGCTGTTGGAACTTTT 59.168 40.909 0.00 0.00 31.64 2.27
2556 2630 4.097892 ACACAAGGCTGTTGGAACTTTTAG 59.902 41.667 0.00 0.00 31.64 1.85
2557 2631 4.097892 CACAAGGCTGTTGGAACTTTTAGT 59.902 41.667 0.00 0.00 31.64 2.24
2559 2633 5.531287 ACAAGGCTGTTGGAACTTTTAGTAG 59.469 40.000 0.00 0.00 28.57 2.57
2560 2634 4.652822 AGGCTGTTGGAACTTTTAGTAGG 58.347 43.478 0.00 0.00 0.00 3.18
2561 2635 4.349930 AGGCTGTTGGAACTTTTAGTAGGA 59.650 41.667 0.00 0.00 0.00 2.94
2562 2636 5.014228 AGGCTGTTGGAACTTTTAGTAGGAT 59.986 40.000 0.00 0.00 0.00 3.24
2563 2637 6.214819 AGGCTGTTGGAACTTTTAGTAGGATA 59.785 38.462 0.00 0.00 0.00 2.59
2564 2638 7.054751 GGCTGTTGGAACTTTTAGTAGGATAT 58.945 38.462 0.00 0.00 0.00 1.63
2566 2640 9.780186 GCTGTTGGAACTTTTAGTAGGATATAT 57.220 33.333 0.00 0.00 0.00 0.86
2592 2666 8.899887 AAAGGGAATGATGATTAGAAAAAGGA 57.100 30.769 0.00 0.00 0.00 3.36
2593 2667 9.498039 AAAGGGAATGATGATTAGAAAAAGGAT 57.502 29.630 0.00 0.00 0.00 3.24
2712 2807 8.424133 GGCTGTTGGAATTTGGAAGAAATATAT 58.576 33.333 0.00 0.00 0.00 0.86
2862 2959 0.389391 GGCTATGGCACTAGCGAAGA 59.611 55.000 17.01 0.00 44.14 2.87
2863 2960 1.492720 GCTATGGCACTAGCGAAGAC 58.507 55.000 11.37 0.00 43.41 3.01
2866 2963 2.015736 ATGGCACTAGCGAAGACTTG 57.984 50.000 0.00 0.00 43.41 3.16
2874 2971 6.647067 GGCACTAGCGAAGACTTGATATTATT 59.353 38.462 0.00 0.00 43.41 1.40
2875 2972 7.171678 GGCACTAGCGAAGACTTGATATTATTT 59.828 37.037 0.00 0.00 43.41 1.40
2876 2973 8.217778 GCACTAGCGAAGACTTGATATTATTTC 58.782 37.037 0.00 0.00 0.00 2.17
2877 2974 9.469807 CACTAGCGAAGACTTGATATTATTTCT 57.530 33.333 0.00 0.00 0.00 2.52
2878 2975 9.685828 ACTAGCGAAGACTTGATATTATTTCTC 57.314 33.333 0.00 0.00 0.00 2.87
2879 2976 9.906660 CTAGCGAAGACTTGATATTATTTCTCT 57.093 33.333 0.00 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
146 147 3.433031 CCACCCCGAAGCTAAATACATCA 60.433 47.826 0.00 0.00 0.00 3.07
161 162 2.203280 TCAAGCAACACCACCCCG 60.203 61.111 0.00 0.00 0.00 5.73
292 293 1.493871 CAATGAATCCCCTCAGGCTCT 59.506 52.381 0.00 0.00 34.51 4.09
401 402 9.620259 GAATTAGTCCTAACAGATTCCAAGAAT 57.380 33.333 0.00 0.00 0.00 2.40
603 622 7.882271 ACCAAAATAGCCATTTATTCAGCAAAA 59.118 29.630 0.00 0.00 33.09 2.44
758 778 3.582647 TGCTTAGGTCTGACCATGAAGAA 59.417 43.478 27.48 18.26 41.95 2.52
778 798 1.401905 CTCCCGCAAATAAAGGAGTGC 59.598 52.381 0.00 0.00 40.91 4.40
793 814 0.674895 CAACTCCTCTTTGGCTCCCG 60.675 60.000 0.00 0.00 35.26 5.14
922 946 6.722129 AGTGTTGGTATATGTAGGAGAGGATC 59.278 42.308 0.00 0.00 0.00 3.36
943 967 6.207417 ACTGCTGCAAATCTTGTATTTAGTGT 59.793 34.615 3.02 0.00 0.00 3.55
1026 1054 2.434359 CGCTCCCTCGGGTTGAAC 60.434 66.667 1.18 0.00 36.47 3.18
1074 1102 4.101448 CCGGGCTTCACCTCCCAG 62.101 72.222 0.00 0.00 42.75 4.45
1182 1210 1.611936 GGCTTCTCTTCCCACTGGAAC 60.612 57.143 0.00 0.00 45.88 3.62
1245 1273 0.676466 AAAAGCCGGCATGACGATCA 60.676 50.000 31.54 0.00 35.47 2.92
1389 1417 4.527157 CTCGACCCGTCCGCGTAC 62.527 72.222 4.92 0.00 36.15 3.67
1434 1462 0.680280 TGCTGTAGTCCTCCGAGTCC 60.680 60.000 0.00 0.00 0.00 3.85
1437 1465 1.133407 GAGTTGCTGTAGTCCTCCGAG 59.867 57.143 0.00 0.00 0.00 4.63
1695 1726 6.604735 AAGCTCAGTGTAAAAAGTGTGTAG 57.395 37.500 0.00 0.00 0.00 2.74
1727 1764 3.876274 ACTGGTGCAGATGTACTACTG 57.124 47.619 12.95 12.95 35.18 2.74
1778 1815 1.065199 CATTAGCAGGAGCAGTTGGGA 60.065 52.381 0.00 0.00 45.49 4.37
1793 1830 3.507233 ACAAACACATCACTGCCCATTAG 59.493 43.478 0.00 0.00 0.00 1.73
1808 1845 2.297701 ACATGAGGGACACACAAACAC 58.702 47.619 0.00 0.00 0.00 3.32
1816 1853 1.446907 CAGAGCAACATGAGGGACAC 58.553 55.000 0.00 0.00 0.00 3.67
1952 2003 2.430610 GCCAGGGATCTCACTCGCT 61.431 63.158 0.00 0.00 38.83 4.93
1953 2004 2.107953 GCCAGGGATCTCACTCGC 59.892 66.667 0.00 0.00 0.00 5.03
1954 2005 1.326213 ACAGCCAGGGATCTCACTCG 61.326 60.000 0.00 0.00 0.00 4.18
1955 2006 0.177604 CACAGCCAGGGATCTCACTC 59.822 60.000 0.00 0.00 0.00 3.51
1956 2007 0.252421 TCACAGCCAGGGATCTCACT 60.252 55.000 0.00 0.00 0.00 3.41
2064 2123 1.735018 CGGAGACACAACACAACAACA 59.265 47.619 0.00 0.00 0.00 3.33
2065 2124 2.004017 TCGGAGACACAACACAACAAC 58.996 47.619 0.00 0.00 0.00 3.32
2066 2125 2.388310 TCGGAGACACAACACAACAA 57.612 45.000 0.00 0.00 0.00 2.83
2154 2215 5.993106 AGAAGTAACAAGAACAAGCTGAC 57.007 39.130 0.00 0.00 0.00 3.51
2171 2232 9.965902 AACAGAATCTCCACATATAAAAGAAGT 57.034 29.630 0.00 0.00 0.00 3.01
2196 2257 5.749588 CACAGATGCACAAATGAACAAGAAA 59.250 36.000 0.00 0.00 0.00 2.52
2220 2281 4.937620 TCTTTGTTGCTCCATCTCATACAC 59.062 41.667 0.00 0.00 0.00 2.90
2310 2375 1.237285 CCTTTTCCTCACCAGGTGCG 61.237 60.000 15.64 8.88 41.28 5.34
2315 2380 4.292186 TCATCTTCCTTTTCCTCACCAG 57.708 45.455 0.00 0.00 0.00 4.00
2435 2501 7.093945 GCCTTGTGTTTGGATATCCTTTTTCTA 60.094 37.037 22.35 6.96 36.82 2.10
2437 2503 5.869344 GCCTTGTGTTTGGATATCCTTTTTC 59.131 40.000 22.35 10.67 36.82 2.29
2442 2508 3.010584 ACAGCCTTGTGTTTGGATATCCT 59.989 43.478 22.35 0.00 35.83 3.24
2446 2512 2.890311 CCAACAGCCTTGTGTTTGGATA 59.110 45.455 0.00 0.00 38.65 2.59
2447 2513 1.688197 CCAACAGCCTTGTGTTTGGAT 59.312 47.619 0.00 0.00 38.65 3.41
2448 2514 1.110442 CCAACAGCCTTGTGTTTGGA 58.890 50.000 0.00 0.00 38.65 3.53
2449 2515 1.110442 TCCAACAGCCTTGTGTTTGG 58.890 50.000 0.00 0.00 38.65 3.28
2450 2516 2.957491 TTCCAACAGCCTTGTGTTTG 57.043 45.000 0.00 0.00 38.65 2.93
2452 2518 3.432046 CCAAATTCCAACAGCCTTGTGTT 60.432 43.478 0.00 0.00 41.47 3.32
2453 2519 2.102925 CCAAATTCCAACAGCCTTGTGT 59.897 45.455 0.00 0.00 37.67 3.72
2515 2586 7.338449 GCCTTGTGTCTGGATTACCTAATAAAA 59.662 37.037 0.00 0.00 37.04 1.52
2516 2587 6.826741 GCCTTGTGTCTGGATTACCTAATAAA 59.173 38.462 0.00 0.00 37.04 1.40
2517 2588 6.157994 AGCCTTGTGTCTGGATTACCTAATAA 59.842 38.462 0.00 0.00 37.04 1.40
2518 2589 5.665812 AGCCTTGTGTCTGGATTACCTAATA 59.334 40.000 0.00 0.00 37.04 0.98
2519 2590 4.475016 AGCCTTGTGTCTGGATTACCTAAT 59.525 41.667 0.00 0.00 37.04 1.73
2520 2591 3.844211 AGCCTTGTGTCTGGATTACCTAA 59.156 43.478 0.00 0.00 37.04 2.69
2521 2592 3.197766 CAGCCTTGTGTCTGGATTACCTA 59.802 47.826 0.00 0.00 37.04 3.08
2534 2608 3.525268 AAAAGTTCCAACAGCCTTGTG 57.475 42.857 0.00 0.00 37.67 3.33
2566 2640 9.989296 TCCTTTTTCTAATCATCATTCCCTTTA 57.011 29.630 0.00 0.00 0.00 1.85
2567 2641 8.899887 TCCTTTTTCTAATCATCATTCCCTTT 57.100 30.769 0.00 0.00 0.00 3.11
2578 2652 9.527157 TGTGTTTGGATATCCTTTTTCTAATCA 57.473 29.630 22.35 8.87 36.82 2.57
2581 2655 8.802267 CCTTGTGTTTGGATATCCTTTTTCTAA 58.198 33.333 22.35 3.90 36.82 2.10
2582 2656 7.093945 GCCTTGTGTTTGGATATCCTTTTTCTA 60.094 37.037 22.35 6.96 36.82 2.10
2584 2658 5.869344 GCCTTGTGTTTGGATATCCTTTTTC 59.131 40.000 22.35 10.67 36.82 2.29
2586 2660 5.047092 CAGCCTTGTGTTTGGATATCCTTTT 60.047 40.000 22.35 0.00 36.82 2.27
2587 2661 4.463891 CAGCCTTGTGTTTGGATATCCTTT 59.536 41.667 22.35 0.00 36.82 3.11
2589 2663 3.010584 ACAGCCTTGTGTTTGGATATCCT 59.989 43.478 22.35 0.00 35.83 3.24
2590 2664 3.356290 ACAGCCTTGTGTTTGGATATCC 58.644 45.455 15.39 15.39 35.83 2.59
2591 2665 4.380867 CCAACAGCCTTGTGTTTGGATATC 60.381 45.833 0.00 0.00 38.65 1.63
2592 2666 3.511146 CCAACAGCCTTGTGTTTGGATAT 59.489 43.478 0.00 0.00 38.65 1.63
2593 2667 2.890311 CCAACAGCCTTGTGTTTGGATA 59.110 45.455 0.00 0.00 38.65 2.59
2599 2690 3.432046 CCAAATTCCAACAGCCTTGTGTT 60.432 43.478 0.00 0.00 41.47 3.32
2662 2754 7.338449 GCCTTGTGTCTGGATTACCTAATAAAA 59.662 37.037 0.00 0.00 37.04 1.52
2663 2755 6.826741 GCCTTGTGTCTGGATTACCTAATAAA 59.173 38.462 0.00 0.00 37.04 1.40
2664 2756 6.157994 AGCCTTGTGTCTGGATTACCTAATAA 59.842 38.462 0.00 0.00 37.04 1.40
2665 2757 5.665812 AGCCTTGTGTCTGGATTACCTAATA 59.334 40.000 0.00 0.00 37.04 0.98
2666 2758 4.475016 AGCCTTGTGTCTGGATTACCTAAT 59.525 41.667 0.00 0.00 37.04 1.73
2667 2759 3.844211 AGCCTTGTGTCTGGATTACCTAA 59.156 43.478 0.00 0.00 37.04 2.69
2668 2760 3.197766 CAGCCTTGTGTCTGGATTACCTA 59.802 47.826 0.00 0.00 37.04 3.08
2761 2856 1.384989 CGAGCCCTCCTTCTAGCGAA 61.385 60.000 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.