Multiple sequence alignment - TraesCS4B01G320500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G320500 chr4B 100.000 6979 0 0 1 6979 611862352 611855374 0.000000e+00 12888
1 TraesCS4B01G320500 chr4B 94.828 464 23 1 3 466 273477073 273477535 0.000000e+00 723
2 TraesCS4B01G320500 chr4D 95.776 6108 160 33 620 6668 482167317 482161249 0.000000e+00 9760
3 TraesCS4B01G320500 chr4D 90.769 130 9 3 6810 6936 482160887 482160758 3.350000e-38 171
4 TraesCS4B01G320500 chr4D 94.545 110 6 0 6711 6820 482161146 482161037 3.350000e-38 171
5 TraesCS4B01G320500 chr5A 91.658 5059 301 48 1550 6560 660436011 660440996 0.000000e+00 6892
6 TraesCS4B01G320500 chr5A 86.129 930 57 26 612 1505 660435111 660436004 0.000000e+00 937
7 TraesCS4B01G320500 chr5A 88.506 261 26 3 6209 6469 661659714 661659458 5.260000e-81 313
8 TraesCS4B01G320500 chr5A 82.090 134 21 1 462 592 660434992 660435125 2.060000e-20 111
9 TraesCS4B01G320500 chr3B 95.494 466 20 1 1 466 391600871 391601335 0.000000e+00 743
10 TraesCS4B01G320500 chr3B 94.647 467 23 2 1 466 309458519 309458984 0.000000e+00 723
11 TraesCS4B01G320500 chr1B 95.043 464 22 1 3 466 173849302 173849764 0.000000e+00 728
12 TraesCS4B01G320500 chr1B 94.850 466 23 1 1 466 189741216 189740752 0.000000e+00 726
13 TraesCS4B01G320500 chr7B 94.850 466 22 2 1 466 212870426 212869963 0.000000e+00 726
14 TraesCS4B01G320500 chr7B 94.850 466 23 1 1 466 238305012 238305476 0.000000e+00 726
15 TraesCS4B01G320500 chr7B 94.828 464 22 2 1 464 111473164 111472703 0.000000e+00 723
16 TraesCS4B01G320500 chr7B 87.925 265 26 4 6206 6469 504480176 504479917 2.450000e-79 307
17 TraesCS4B01G320500 chr7B 87.454 271 25 7 6200 6468 505937574 505937837 3.160000e-78 303
18 TraesCS4B01G320500 chr2B 94.850 466 23 1 1 466 212069809 212070273 0.000000e+00 726
19 TraesCS4B01G320500 chr6D 88.636 264 28 2 6206 6468 348087598 348087860 3.140000e-83 320
20 TraesCS4B01G320500 chr7D 87.868 272 23 7 6200 6467 480002851 480003116 1.890000e-80 311
21 TraesCS4B01G320500 chr7A 87.547 265 31 2 6203 6466 699736150 699735887 8.790000e-79 305
22 TraesCS4B01G320500 chr2D 87.085 271 31 4 6200 6468 56643394 56643662 3.160000e-78 303


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G320500 chr4B 611855374 611862352 6978 True 12888.000000 12888 100.000000 1 6979 1 chr4B.!!$R1 6978
1 TraesCS4B01G320500 chr4D 482160758 482167317 6559 True 3367.333333 9760 93.696667 620 6936 3 chr4D.!!$R1 6316
2 TraesCS4B01G320500 chr5A 660434992 660440996 6004 False 2646.666667 6892 86.625667 462 6560 3 chr5A.!!$F1 6098

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
780 781 0.322187 ACCCGCGCAAATCTTAACCT 60.322 50.000 8.75 0.0 0.00 3.50 F
2328 2394 0.322187 ATTTACCTGTCGGTGCCCAC 60.322 55.000 0.00 0.0 45.18 4.61 F
3122 3193 0.034477 CGCCCTTCCCTGTAACCAAT 60.034 55.000 0.00 0.0 0.00 3.16 F
4209 4295 3.812053 AGCTTGTGTCTGCTAAAAGTCAG 59.188 43.478 0.00 0.0 37.81 3.51 F
5162 5254 0.179000 GTTCCACCGATGAGGATGCT 59.821 55.000 0.00 0.0 45.00 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2481 2547 0.871722 GAACATGCGGTGTAGTTGCA 59.128 50.0 0.0 0.0 41.14 4.08 R
4083 4169 1.229428 TGCAGCAGTTGAAGTACAGC 58.771 50.0 0.0 0.0 0.00 4.40 R
4590 4682 0.552848 GCCCCTCAAAGGATGGATCA 59.447 55.0 0.0 0.0 37.67 2.92 R
5336 5428 0.320858 CATTGCAGCCAACATTGCCA 60.321 50.0 0.0 0.0 39.54 4.92 R
6731 6915 0.107508 AGGGTGGATGCGTGAATCAG 60.108 55.0 0.0 0.0 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.273320 TCATAGTCCGAGGAACTTGTATAAG 57.727 40.000 0.00 0.00 41.55 1.73
26 27 5.579564 AGTCCGAGGAACTTGTATAAGTC 57.420 43.478 5.24 0.15 46.14 3.01
27 28 5.014858 AGTCCGAGGAACTTGTATAAGTCA 58.985 41.667 5.24 0.00 46.14 3.41
28 29 5.657302 AGTCCGAGGAACTTGTATAAGTCAT 59.343 40.000 5.24 0.00 46.14 3.06
29 30 5.749109 GTCCGAGGAACTTGTATAAGTCATG 59.251 44.000 5.24 0.00 46.14 3.07
30 31 5.655090 TCCGAGGAACTTGTATAAGTCATGA 59.345 40.000 5.24 0.00 46.14 3.07
31 32 6.153851 TCCGAGGAACTTGTATAAGTCATGAA 59.846 38.462 5.24 0.00 46.14 2.57
32 33 6.477033 CCGAGGAACTTGTATAAGTCATGAAG 59.523 42.308 5.24 0.00 46.14 3.02
33 34 7.258441 CGAGGAACTTGTATAAGTCATGAAGA 58.742 38.462 5.24 0.00 46.14 2.87
34 35 7.759886 CGAGGAACTTGTATAAGTCATGAAGAA 59.240 37.037 5.24 0.00 46.14 2.52
35 36 9.436957 GAGGAACTTGTATAAGTCATGAAGAAA 57.563 33.333 5.24 0.00 46.14 2.52
36 37 9.793259 AGGAACTTGTATAAGTCATGAAGAAAA 57.207 29.630 5.24 0.00 46.14 2.29
38 39 9.548208 GAACTTGTATAAGTCATGAAGAAAAGC 57.452 33.333 5.24 0.00 46.14 3.51
39 40 8.621532 ACTTGTATAAGTCATGAAGAAAAGCA 57.378 30.769 0.00 0.00 43.53 3.91
40 41 8.725148 ACTTGTATAAGTCATGAAGAAAAGCAG 58.275 33.333 0.00 0.00 43.53 4.24
41 42 8.621532 TTGTATAAGTCATGAAGAAAAGCAGT 57.378 30.769 0.00 0.00 0.00 4.40
42 43 9.719355 TTGTATAAGTCATGAAGAAAAGCAGTA 57.281 29.630 0.00 0.00 0.00 2.74
43 44 9.371136 TGTATAAGTCATGAAGAAAAGCAGTAG 57.629 33.333 0.00 0.00 0.00 2.57
44 45 5.619625 AAGTCATGAAGAAAAGCAGTAGC 57.380 39.130 0.00 0.00 42.56 3.58
45 46 4.645535 AGTCATGAAGAAAAGCAGTAGCA 58.354 39.130 0.00 0.00 45.49 3.49
46 47 5.065914 AGTCATGAAGAAAAGCAGTAGCAA 58.934 37.500 0.00 0.00 45.49 3.91
47 48 5.709164 AGTCATGAAGAAAAGCAGTAGCAAT 59.291 36.000 0.00 0.00 45.49 3.56
48 49 5.798934 GTCATGAAGAAAAGCAGTAGCAATG 59.201 40.000 0.00 0.00 45.49 2.82
49 50 5.706833 TCATGAAGAAAAGCAGTAGCAATGA 59.293 36.000 0.00 0.00 45.49 2.57
50 51 6.207221 TCATGAAGAAAAGCAGTAGCAATGAA 59.793 34.615 0.00 0.00 45.49 2.57
51 52 6.389830 TGAAGAAAAGCAGTAGCAATGAAA 57.610 33.333 0.00 0.00 45.49 2.69
52 53 6.208644 TGAAGAAAAGCAGTAGCAATGAAAC 58.791 36.000 0.00 0.00 45.49 2.78
53 54 6.039717 TGAAGAAAAGCAGTAGCAATGAAACT 59.960 34.615 0.00 0.00 45.49 2.66
54 55 7.228507 TGAAGAAAAGCAGTAGCAATGAAACTA 59.771 33.333 0.00 0.00 45.49 2.24
55 56 7.510549 AGAAAAGCAGTAGCAATGAAACTAA 57.489 32.000 0.00 0.00 45.49 2.24
56 57 7.363431 AGAAAAGCAGTAGCAATGAAACTAAC 58.637 34.615 0.00 0.00 45.49 2.34
57 58 6.633500 AAAGCAGTAGCAATGAAACTAACA 57.367 33.333 0.00 0.00 45.49 2.41
58 59 5.613358 AGCAGTAGCAATGAAACTAACAC 57.387 39.130 0.00 0.00 45.49 3.32
59 60 5.063204 AGCAGTAGCAATGAAACTAACACA 58.937 37.500 0.00 0.00 45.49 3.72
60 61 5.530915 AGCAGTAGCAATGAAACTAACACAA 59.469 36.000 0.00 0.00 45.49 3.33
61 62 6.207417 AGCAGTAGCAATGAAACTAACACAAT 59.793 34.615 0.00 0.00 45.49 2.71
62 63 6.524586 GCAGTAGCAATGAAACTAACACAATC 59.475 38.462 0.00 0.00 41.58 2.67
63 64 7.584108 CAGTAGCAATGAAACTAACACAATCA 58.416 34.615 0.00 0.00 0.00 2.57
64 65 8.239314 CAGTAGCAATGAAACTAACACAATCAT 58.761 33.333 0.00 0.00 32.36 2.45
65 66 9.448438 AGTAGCAATGAAACTAACACAATCATA 57.552 29.630 0.00 0.00 30.90 2.15
68 69 9.577110 AGCAATGAAACTAACACAATCATAATG 57.423 29.630 0.00 0.00 30.90 1.90
69 70 8.323140 GCAATGAAACTAACACAATCATAATGC 58.677 33.333 0.00 0.00 30.90 3.56
70 71 9.577110 CAATGAAACTAACACAATCATAATGCT 57.423 29.630 0.00 0.00 30.90 3.79
74 75 9.226345 GAAACTAACACAATCATAATGCTAAGC 57.774 33.333 0.00 0.00 0.00 3.09
75 76 8.511604 AACTAACACAATCATAATGCTAAGCT 57.488 30.769 0.00 0.00 0.00 3.74
76 77 9.613428 AACTAACACAATCATAATGCTAAGCTA 57.387 29.630 0.00 0.00 0.00 3.32
77 78 9.613428 ACTAACACAATCATAATGCTAAGCTAA 57.387 29.630 0.00 0.00 0.00 3.09
78 79 9.869844 CTAACACAATCATAATGCTAAGCTAAC 57.130 33.333 0.00 0.00 0.00 2.34
79 80 7.864108 ACACAATCATAATGCTAAGCTAACA 57.136 32.000 0.00 0.00 0.00 2.41
80 81 7.923888 ACACAATCATAATGCTAAGCTAACAG 58.076 34.615 0.00 0.00 0.00 3.16
81 82 7.770433 ACACAATCATAATGCTAAGCTAACAGA 59.230 33.333 0.00 0.00 0.00 3.41
82 83 8.781196 CACAATCATAATGCTAAGCTAACAGAT 58.219 33.333 0.00 0.00 0.00 2.90
83 84 8.781196 ACAATCATAATGCTAAGCTAACAGATG 58.219 33.333 0.00 0.00 0.00 2.90
84 85 7.918536 ATCATAATGCTAAGCTAACAGATGG 57.081 36.000 0.00 0.00 0.00 3.51
85 86 6.233434 TCATAATGCTAAGCTAACAGATGGG 58.767 40.000 0.00 0.00 0.00 4.00
86 87 4.510167 AATGCTAAGCTAACAGATGGGT 57.490 40.909 0.00 0.00 0.00 4.51
87 88 3.543680 TGCTAAGCTAACAGATGGGTC 57.456 47.619 0.00 0.00 0.00 4.46
88 89 2.159099 TGCTAAGCTAACAGATGGGTCG 60.159 50.000 0.00 0.00 0.00 4.79
89 90 2.159085 GCTAAGCTAACAGATGGGTCGT 60.159 50.000 0.00 0.00 0.00 4.34
90 91 2.386661 AAGCTAACAGATGGGTCGTG 57.613 50.000 0.00 0.00 0.00 4.35
91 92 1.267121 AGCTAACAGATGGGTCGTGT 58.733 50.000 0.00 0.00 0.00 4.49
92 93 1.204941 AGCTAACAGATGGGTCGTGTC 59.795 52.381 0.00 0.00 0.00 3.67
93 94 1.739371 GCTAACAGATGGGTCGTGTCC 60.739 57.143 0.00 0.00 0.00 4.02
94 95 1.548719 CTAACAGATGGGTCGTGTCCA 59.451 52.381 0.00 0.00 38.82 4.02
95 96 0.984230 AACAGATGGGTCGTGTCCAT 59.016 50.000 6.63 6.63 46.73 3.41
101 102 3.685139 ATGGGTCGTGTCCATCATATC 57.315 47.619 0.00 0.00 40.74 1.63
102 103 2.393646 TGGGTCGTGTCCATCATATCA 58.606 47.619 0.00 0.00 0.00 2.15
103 104 2.972021 TGGGTCGTGTCCATCATATCAT 59.028 45.455 0.00 0.00 0.00 2.45
104 105 3.390967 TGGGTCGTGTCCATCATATCATT 59.609 43.478 0.00 0.00 0.00 2.57
105 106 3.997021 GGGTCGTGTCCATCATATCATTC 59.003 47.826 0.00 0.00 0.00 2.67
106 107 4.262635 GGGTCGTGTCCATCATATCATTCT 60.263 45.833 0.00 0.00 0.00 2.40
107 108 4.926238 GGTCGTGTCCATCATATCATTCTC 59.074 45.833 0.00 0.00 0.00 2.87
108 109 4.926238 GTCGTGTCCATCATATCATTCTCC 59.074 45.833 0.00 0.00 0.00 3.71
109 110 4.835056 TCGTGTCCATCATATCATTCTCCT 59.165 41.667 0.00 0.00 0.00 3.69
110 111 6.010219 TCGTGTCCATCATATCATTCTCCTA 58.990 40.000 0.00 0.00 0.00 2.94
111 112 6.493458 TCGTGTCCATCATATCATTCTCCTAA 59.507 38.462 0.00 0.00 0.00 2.69
112 113 7.179160 TCGTGTCCATCATATCATTCTCCTAAT 59.821 37.037 0.00 0.00 0.00 1.73
113 114 7.277319 CGTGTCCATCATATCATTCTCCTAATG 59.723 40.741 0.00 0.00 0.00 1.90
114 115 8.316946 GTGTCCATCATATCATTCTCCTAATGA 58.683 37.037 3.13 3.13 40.50 2.57
115 116 9.054580 TGTCCATCATATCATTCTCCTAATGAT 57.945 33.333 15.36 15.36 46.01 2.45
116 117 9.327628 GTCCATCATATCATTCTCCTAATGATG 57.672 37.037 18.79 13.55 44.49 3.07
117 118 9.054580 TCCATCATATCATTCTCCTAATGATGT 57.945 33.333 18.79 12.03 44.57 3.06
122 123 5.296151 TCATTCTCCTAATGATGTGACCC 57.704 43.478 0.00 0.00 32.21 4.46
123 124 4.103153 TCATTCTCCTAATGATGTGACCCC 59.897 45.833 0.00 0.00 32.21 4.95
124 125 2.039418 TCTCCTAATGATGTGACCCCG 58.961 52.381 0.00 0.00 0.00 5.73
125 126 1.762957 CTCCTAATGATGTGACCCCGT 59.237 52.381 0.00 0.00 0.00 5.28
126 127 2.170607 CTCCTAATGATGTGACCCCGTT 59.829 50.000 0.00 0.00 0.00 4.44
127 128 2.169769 TCCTAATGATGTGACCCCGTTC 59.830 50.000 0.00 0.00 0.00 3.95
128 129 2.093181 CCTAATGATGTGACCCCGTTCA 60.093 50.000 0.00 0.00 0.00 3.18
129 130 2.806945 AATGATGTGACCCCGTTCAT 57.193 45.000 0.00 0.00 0.00 2.57
130 131 2.332063 ATGATGTGACCCCGTTCATC 57.668 50.000 0.00 0.00 37.68 2.92
131 132 0.980423 TGATGTGACCCCGTTCATCA 59.020 50.000 0.00 0.00 42.48 3.07
132 133 1.349357 TGATGTGACCCCGTTCATCAA 59.651 47.619 0.00 0.00 42.01 2.57
133 134 2.224646 TGATGTGACCCCGTTCATCAAA 60.225 45.455 0.00 0.00 42.01 2.69
134 135 2.577606 TGTGACCCCGTTCATCAAAT 57.422 45.000 0.00 0.00 0.00 2.32
135 136 2.158559 TGTGACCCCGTTCATCAAATG 58.841 47.619 0.00 0.00 0.00 2.32
136 137 2.224646 TGTGACCCCGTTCATCAAATGA 60.225 45.455 0.00 0.00 37.55 2.57
137 138 2.161609 GTGACCCCGTTCATCAAATGAC 59.838 50.000 0.00 0.00 39.39 3.06
138 139 2.224646 TGACCCCGTTCATCAAATGACA 60.225 45.455 0.00 0.00 39.39 3.58
139 140 2.817258 GACCCCGTTCATCAAATGACAA 59.183 45.455 0.00 0.00 39.39 3.18
140 141 2.556622 ACCCCGTTCATCAAATGACAAC 59.443 45.455 0.00 0.00 39.39 3.32
141 142 2.556189 CCCCGTTCATCAAATGACAACA 59.444 45.455 7.48 0.00 39.39 3.33
142 143 3.564511 CCCGTTCATCAAATGACAACAC 58.435 45.455 7.48 0.00 39.39 3.32
143 144 3.004210 CCCGTTCATCAAATGACAACACA 59.996 43.478 7.48 0.00 39.39 3.72
144 145 4.321156 CCCGTTCATCAAATGACAACACAT 60.321 41.667 7.48 0.00 39.39 3.21
145 146 4.618067 CCGTTCATCAAATGACAACACATG 59.382 41.667 0.00 0.00 39.39 3.21
158 159 5.755409 ACAACACATGTCTATGGTTAGGA 57.245 39.130 0.00 0.00 37.96 2.94
159 160 6.121776 ACAACACATGTCTATGGTTAGGAA 57.878 37.500 0.00 0.00 37.96 3.36
160 161 6.539173 ACAACACATGTCTATGGTTAGGAAA 58.461 36.000 0.00 0.00 37.96 3.13
161 162 6.430000 ACAACACATGTCTATGGTTAGGAAAC 59.570 38.462 0.00 0.00 37.96 2.78
162 163 6.121776 ACACATGTCTATGGTTAGGAAACA 57.878 37.500 0.00 0.00 38.66 2.83
163 164 6.721318 ACACATGTCTATGGTTAGGAAACAT 58.279 36.000 0.00 0.00 38.66 2.71
164 165 7.857456 ACACATGTCTATGGTTAGGAAACATA 58.143 34.615 0.00 0.00 38.66 2.29
165 166 8.325787 ACACATGTCTATGGTTAGGAAACATAA 58.674 33.333 0.00 0.00 38.66 1.90
166 167 8.612619 CACATGTCTATGGTTAGGAAACATAAC 58.387 37.037 0.00 0.00 38.66 1.89
184 185 9.730420 AAACATAACCATATTTGATTAACGAGC 57.270 29.630 0.00 0.00 0.00 5.03
185 186 8.677148 ACATAACCATATTTGATTAACGAGCT 57.323 30.769 0.00 0.00 0.00 4.09
186 187 9.772973 ACATAACCATATTTGATTAACGAGCTA 57.227 29.630 0.00 0.00 0.00 3.32
188 189 9.998106 ATAACCATATTTGATTAACGAGCTAGT 57.002 29.630 0.00 0.00 0.00 2.57
189 190 7.948278 ACCATATTTGATTAACGAGCTAGTC 57.052 36.000 0.00 0.00 0.00 2.59
190 191 7.497595 ACCATATTTGATTAACGAGCTAGTCA 58.502 34.615 0.00 0.00 0.00 3.41
191 192 7.985184 ACCATATTTGATTAACGAGCTAGTCAA 59.015 33.333 0.00 0.00 0.00 3.18
192 193 8.491152 CCATATTTGATTAACGAGCTAGTCAAG 58.509 37.037 0.00 0.00 31.56 3.02
193 194 9.035607 CATATTTGATTAACGAGCTAGTCAAGT 57.964 33.333 0.00 0.16 31.56 3.16
195 196 8.635877 ATTTGATTAACGAGCTAGTCAAGTAG 57.364 34.615 0.00 0.00 31.56 2.57
196 197 6.997239 TGATTAACGAGCTAGTCAAGTAGA 57.003 37.500 0.00 0.00 0.00 2.59
197 198 7.017498 TGATTAACGAGCTAGTCAAGTAGAG 57.983 40.000 0.00 0.00 0.00 2.43
198 199 5.814764 TTAACGAGCTAGTCAAGTAGAGG 57.185 43.478 0.00 0.00 0.00 3.69
199 200 2.018515 ACGAGCTAGTCAAGTAGAGGC 58.981 52.381 0.00 0.00 0.00 4.70
200 201 2.017782 CGAGCTAGTCAAGTAGAGGCA 58.982 52.381 0.00 0.00 0.00 4.75
201 202 2.621055 CGAGCTAGTCAAGTAGAGGCAT 59.379 50.000 0.00 0.00 0.00 4.40
202 203 3.815962 CGAGCTAGTCAAGTAGAGGCATA 59.184 47.826 0.00 0.00 0.00 3.14
203 204 4.319911 CGAGCTAGTCAAGTAGAGGCATAC 60.320 50.000 0.00 0.00 0.00 2.39
204 205 4.798882 AGCTAGTCAAGTAGAGGCATACT 58.201 43.478 0.00 0.00 37.61 2.12
205 206 5.942961 AGCTAGTCAAGTAGAGGCATACTA 58.057 41.667 3.23 0.00 34.90 1.82
206 207 6.001460 AGCTAGTCAAGTAGAGGCATACTAG 58.999 44.000 0.00 0.00 38.50 2.57
207 208 5.766174 GCTAGTCAAGTAGAGGCATACTAGT 59.234 44.000 0.00 0.00 38.02 2.57
208 209 6.293735 GCTAGTCAAGTAGAGGCATACTAGTG 60.294 46.154 5.39 0.00 38.02 2.74
209 210 5.756918 AGTCAAGTAGAGGCATACTAGTGA 58.243 41.667 5.39 2.59 34.90 3.41
210 211 5.591067 AGTCAAGTAGAGGCATACTAGTGAC 59.409 44.000 17.97 17.97 40.57 3.67
211 212 5.357314 GTCAAGTAGAGGCATACTAGTGACA 59.643 44.000 19.41 0.00 40.28 3.58
212 213 5.357314 TCAAGTAGAGGCATACTAGTGACAC 59.643 44.000 5.39 0.00 34.90 3.67
213 214 5.118729 AGTAGAGGCATACTAGTGACACT 57.881 43.478 13.68 13.68 34.21 3.55
214 215 6.249911 AGTAGAGGCATACTAGTGACACTA 57.750 41.667 14.53 14.53 34.21 2.74
215 216 6.843752 AGTAGAGGCATACTAGTGACACTAT 58.156 40.000 15.58 8.80 33.76 2.12
216 217 6.712998 AGTAGAGGCATACTAGTGACACTATG 59.287 42.308 15.58 13.06 33.76 2.23
217 218 5.450453 AGAGGCATACTAGTGACACTATGT 58.550 41.667 15.58 16.25 29.08 2.29
218 219 5.894393 AGAGGCATACTAGTGACACTATGTT 59.106 40.000 15.58 6.32 29.08 2.71
219 220 6.381420 AGAGGCATACTAGTGACACTATGTTT 59.619 38.462 15.58 8.50 29.08 2.83
220 221 6.947464 AGGCATACTAGTGACACTATGTTTT 58.053 36.000 15.58 5.53 29.08 2.43
221 222 7.394816 AGGCATACTAGTGACACTATGTTTTT 58.605 34.615 15.58 3.58 29.08 1.94
252 253 8.705134 TGTATTCACACATGTACTAAGTTTTCG 58.295 33.333 0.00 0.00 0.00 3.46
253 254 6.533819 TTCACACATGTACTAAGTTTTCGG 57.466 37.500 0.00 0.00 0.00 4.30
254 255 5.603596 TCACACATGTACTAAGTTTTCGGT 58.396 37.500 0.00 0.00 0.00 4.69
255 256 6.050432 TCACACATGTACTAAGTTTTCGGTT 58.950 36.000 0.00 0.00 0.00 4.44
256 257 7.208777 TCACACATGTACTAAGTTTTCGGTTA 58.791 34.615 0.00 0.00 0.00 2.85
257 258 7.710044 TCACACATGTACTAAGTTTTCGGTTAA 59.290 33.333 0.00 0.00 0.00 2.01
258 259 8.500773 CACACATGTACTAAGTTTTCGGTTAAT 58.499 33.333 0.00 0.00 0.00 1.40
259 260 9.709495 ACACATGTACTAAGTTTTCGGTTAATA 57.291 29.630 0.00 0.00 0.00 0.98
260 261 9.962759 CACATGTACTAAGTTTTCGGTTAATAC 57.037 33.333 0.00 0.00 0.00 1.89
261 262 9.709495 ACATGTACTAAGTTTTCGGTTAATACA 57.291 29.630 0.00 0.00 0.00 2.29
270 271 8.556213 AGTTTTCGGTTAATACAATTCTAGCA 57.444 30.769 0.00 0.00 0.00 3.49
271 272 9.174166 AGTTTTCGGTTAATACAATTCTAGCAT 57.826 29.630 0.00 0.00 0.00 3.79
272 273 9.221775 GTTTTCGGTTAATACAATTCTAGCATG 57.778 33.333 0.00 0.00 0.00 4.06
273 274 8.725405 TTTCGGTTAATACAATTCTAGCATGA 57.275 30.769 0.00 0.00 0.00 3.07
274 275 8.725405 TTCGGTTAATACAATTCTAGCATGAA 57.275 30.769 0.00 0.00 0.00 2.57
275 276 8.902540 TCGGTTAATACAATTCTAGCATGAAT 57.097 30.769 0.00 0.00 38.19 2.57
276 277 9.990360 TCGGTTAATACAATTCTAGCATGAATA 57.010 29.630 0.00 0.00 35.82 1.75
334 335 8.637196 AATAACTTTATTATTGCCTCTAGGGC 57.363 34.615 13.60 13.60 44.71 5.19
346 347 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02
347 348 4.904241 CCTCTAGGGCATATTTCCTTCAG 58.096 47.826 0.00 0.00 34.75 3.02
348 349 4.349342 CCTCTAGGGCATATTTCCTTCAGT 59.651 45.833 0.00 0.00 34.75 3.41
349 350 5.512232 CCTCTAGGGCATATTTCCTTCAGTC 60.512 48.000 0.00 0.00 34.75 3.51
350 351 5.219739 TCTAGGGCATATTTCCTTCAGTCT 58.780 41.667 0.00 0.00 34.75 3.24
351 352 4.870021 AGGGCATATTTCCTTCAGTCTT 57.130 40.909 0.00 0.00 0.00 3.01
352 353 4.786425 AGGGCATATTTCCTTCAGTCTTC 58.214 43.478 0.00 0.00 0.00 2.87
353 354 3.885901 GGGCATATTTCCTTCAGTCTTCC 59.114 47.826 0.00 0.00 0.00 3.46
354 355 4.526970 GGCATATTTCCTTCAGTCTTCCA 58.473 43.478 0.00 0.00 0.00 3.53
355 356 4.336713 GGCATATTTCCTTCAGTCTTCCAC 59.663 45.833 0.00 0.00 0.00 4.02
356 357 5.189180 GCATATTTCCTTCAGTCTTCCACT 58.811 41.667 0.00 0.00 34.67 4.00
357 358 5.649831 GCATATTTCCTTCAGTCTTCCACTT 59.350 40.000 0.00 0.00 30.26 3.16
358 359 6.404074 GCATATTTCCTTCAGTCTTCCACTTG 60.404 42.308 0.00 0.00 30.26 3.16
359 360 2.550830 TCCTTCAGTCTTCCACTTGC 57.449 50.000 0.00 0.00 30.26 4.01
360 361 1.768275 TCCTTCAGTCTTCCACTTGCA 59.232 47.619 0.00 0.00 30.26 4.08
361 362 1.876156 CCTTCAGTCTTCCACTTGCAC 59.124 52.381 0.00 0.00 30.26 4.57
362 363 2.486191 CCTTCAGTCTTCCACTTGCACT 60.486 50.000 0.00 0.00 30.26 4.40
363 364 3.244215 CCTTCAGTCTTCCACTTGCACTA 60.244 47.826 0.00 0.00 30.26 2.74
364 365 3.667497 TCAGTCTTCCACTTGCACTAG 57.333 47.619 0.00 0.00 30.26 2.57
365 366 3.230976 TCAGTCTTCCACTTGCACTAGA 58.769 45.455 0.00 0.00 30.26 2.43
366 367 3.256879 TCAGTCTTCCACTTGCACTAGAG 59.743 47.826 0.00 0.00 30.26 2.43
367 368 3.006323 CAGTCTTCCACTTGCACTAGAGT 59.994 47.826 0.00 0.00 30.26 3.24
368 369 3.257127 AGTCTTCCACTTGCACTAGAGTC 59.743 47.826 0.00 0.00 26.56 3.36
369 370 3.005897 GTCTTCCACTTGCACTAGAGTCA 59.994 47.826 0.00 0.00 0.00 3.41
370 371 3.641436 TCTTCCACTTGCACTAGAGTCAA 59.359 43.478 0.00 0.00 0.00 3.18
371 372 4.284490 TCTTCCACTTGCACTAGAGTCAAT 59.716 41.667 0.00 0.00 0.00 2.57
372 373 5.480422 TCTTCCACTTGCACTAGAGTCAATA 59.520 40.000 0.00 0.00 0.00 1.90
373 374 5.738619 TCCACTTGCACTAGAGTCAATAA 57.261 39.130 0.00 0.00 0.00 1.40
374 375 6.299805 TCCACTTGCACTAGAGTCAATAAT 57.700 37.500 0.00 0.00 0.00 1.28
375 376 6.341316 TCCACTTGCACTAGAGTCAATAATC 58.659 40.000 0.00 0.00 0.00 1.75
376 377 6.155221 TCCACTTGCACTAGAGTCAATAATCT 59.845 38.462 0.00 0.00 0.00 2.40
377 378 7.342026 TCCACTTGCACTAGAGTCAATAATCTA 59.658 37.037 0.00 0.00 0.00 1.98
378 379 7.651304 CCACTTGCACTAGAGTCAATAATCTAG 59.349 40.741 8.00 8.00 46.90 2.43
379 380 8.409371 CACTTGCACTAGAGTCAATAATCTAGA 58.591 37.037 14.71 0.00 45.21 2.43
380 381 9.142014 ACTTGCACTAGAGTCAATAATCTAGAT 57.858 33.333 14.71 0.00 45.21 1.98
381 382 9.979578 CTTGCACTAGAGTCAATAATCTAGATT 57.020 33.333 21.28 21.28 45.21 2.40
407 408 8.908786 ACATAGTAATGATTCTAACACCCATG 57.091 34.615 0.00 0.00 36.54 3.66
408 409 8.713971 ACATAGTAATGATTCTAACACCCATGA 58.286 33.333 0.00 0.00 36.54 3.07
409 410 9.559732 CATAGTAATGATTCTAACACCCATGAA 57.440 33.333 0.00 0.00 34.84 2.57
410 411 9.784531 ATAGTAATGATTCTAACACCCATGAAG 57.215 33.333 0.00 0.00 0.00 3.02
411 412 5.841957 AATGATTCTAACACCCATGAAGC 57.158 39.130 0.00 0.00 0.00 3.86
412 413 4.574674 TGATTCTAACACCCATGAAGCT 57.425 40.909 0.00 0.00 0.00 3.74
413 414 4.922206 TGATTCTAACACCCATGAAGCTT 58.078 39.130 0.00 0.00 0.00 3.74
414 415 5.324409 TGATTCTAACACCCATGAAGCTTT 58.676 37.500 0.00 0.00 0.00 3.51
415 416 5.183713 TGATTCTAACACCCATGAAGCTTTG 59.816 40.000 0.00 0.00 0.00 2.77
416 417 3.420893 TCTAACACCCATGAAGCTTTGG 58.579 45.455 9.85 9.85 0.00 3.28
417 418 2.086610 AACACCCATGAAGCTTTGGT 57.913 45.000 14.67 9.95 0.00 3.67
419 420 1.331214 CACCCATGAAGCTTTGGTGT 58.669 50.000 21.11 13.98 41.20 4.16
420 421 1.688197 CACCCATGAAGCTTTGGTGTT 59.312 47.619 21.11 4.58 41.20 3.32
421 422 1.688197 ACCCATGAAGCTTTGGTGTTG 59.312 47.619 14.67 3.69 0.00 3.33
422 423 1.962807 CCCATGAAGCTTTGGTGTTGA 59.037 47.619 14.67 0.00 0.00 3.18
423 424 2.564062 CCCATGAAGCTTTGGTGTTGAT 59.436 45.455 14.67 0.00 0.00 2.57
424 425 3.367703 CCCATGAAGCTTTGGTGTTGATC 60.368 47.826 14.67 0.00 0.00 2.92
425 426 3.256383 CCATGAAGCTTTGGTGTTGATCA 59.744 43.478 8.77 0.00 0.00 2.92
426 427 3.988379 TGAAGCTTTGGTGTTGATCAC 57.012 42.857 0.00 0.00 45.47 3.06
436 437 2.298300 GTGTTGATCACGTTTTGCTCG 58.702 47.619 0.00 0.00 37.31 5.03
437 438 1.937223 TGTTGATCACGTTTTGCTCGT 59.063 42.857 0.00 0.00 42.33 4.18
444 445 2.468532 ACGTTTTGCTCGTGGAAAAG 57.531 45.000 15.72 12.36 42.56 2.27
445 446 1.064952 ACGTTTTGCTCGTGGAAAAGG 59.935 47.619 25.07 25.07 46.89 3.11
446 447 1.487482 GTTTTGCTCGTGGAAAAGGC 58.513 50.000 15.72 3.66 42.56 4.35
447 448 1.067060 GTTTTGCTCGTGGAAAAGGCT 59.933 47.619 15.72 0.00 42.56 4.58
448 449 1.398692 TTTGCTCGTGGAAAAGGCTT 58.601 45.000 1.45 0.00 30.64 4.35
449 450 2.264005 TTGCTCGTGGAAAAGGCTTA 57.736 45.000 0.00 0.00 0.00 3.09
450 451 2.489938 TGCTCGTGGAAAAGGCTTAT 57.510 45.000 0.00 0.00 0.00 1.73
451 452 2.790433 TGCTCGTGGAAAAGGCTTATT 58.210 42.857 0.00 0.00 0.00 1.40
452 453 2.747446 TGCTCGTGGAAAAGGCTTATTC 59.253 45.455 0.00 6.87 0.00 1.75
453 454 2.747446 GCTCGTGGAAAAGGCTTATTCA 59.253 45.455 17.69 7.88 0.00 2.57
454 455 3.190535 GCTCGTGGAAAAGGCTTATTCAA 59.809 43.478 17.69 8.82 0.00 2.69
455 456 4.142381 GCTCGTGGAAAAGGCTTATTCAAT 60.142 41.667 17.69 0.00 0.00 2.57
456 457 5.309323 TCGTGGAAAAGGCTTATTCAATG 57.691 39.130 17.69 13.96 0.00 2.82
457 458 4.157656 TCGTGGAAAAGGCTTATTCAATGG 59.842 41.667 17.69 8.27 0.00 3.16
458 459 4.677779 CGTGGAAAAGGCTTATTCAATGGG 60.678 45.833 17.69 4.17 0.00 4.00
459 460 4.222810 GTGGAAAAGGCTTATTCAATGGGT 59.777 41.667 17.69 0.00 0.00 4.51
460 461 4.466015 TGGAAAAGGCTTATTCAATGGGTC 59.534 41.667 17.69 5.57 0.00 4.46
493 494 0.975135 TGTTGCCCCATGGTTTGATG 59.025 50.000 11.73 0.00 0.00 3.07
500 501 1.666209 CCATGGTTTGATGGGACGGC 61.666 60.000 2.57 0.00 39.53 5.68
501 502 0.680921 CATGGTTTGATGGGACGGCT 60.681 55.000 0.00 0.00 0.00 5.52
503 504 1.002624 GGTTTGATGGGACGGCTGA 60.003 57.895 0.00 0.00 0.00 4.26
506 507 1.611491 GTTTGATGGGACGGCTGAAAA 59.389 47.619 0.00 0.00 0.00 2.29
510 511 1.818674 GATGGGACGGCTGAAAATGTT 59.181 47.619 0.00 0.00 0.00 2.71
519 520 3.365969 CGGCTGAAAATGTTCTAACACCC 60.366 47.826 0.00 0.00 42.51 4.61
527 528 6.739331 AAATGTTCTAACACCCAAAATCCA 57.261 33.333 0.00 0.00 42.51 3.41
530 531 4.956700 TGTTCTAACACCCAAAATCCAACA 59.043 37.500 0.00 0.00 33.17 3.33
531 532 5.422331 TGTTCTAACACCCAAAATCCAACAA 59.578 36.000 0.00 0.00 33.17 2.83
540 541 5.104569 ACCCAAAATCCAACAACTGTGAATT 60.105 36.000 0.00 0.00 0.00 2.17
541 542 5.466393 CCCAAAATCCAACAACTGTGAATTC 59.534 40.000 0.00 0.00 0.00 2.17
544 545 7.382218 CCAAAATCCAACAACTGTGAATTCTAC 59.618 37.037 7.05 4.25 0.00 2.59
583 584 4.994852 AGTTGCGCAGTTTTAATGTCTCTA 59.005 37.500 11.31 0.00 0.00 2.43
584 585 4.921470 TGCGCAGTTTTAATGTCTCTAC 57.079 40.909 5.66 0.00 0.00 2.59
585 586 4.566004 TGCGCAGTTTTAATGTCTCTACT 58.434 39.130 5.66 0.00 0.00 2.57
586 587 5.716094 TGCGCAGTTTTAATGTCTCTACTA 58.284 37.500 5.66 0.00 0.00 1.82
587 588 6.160684 TGCGCAGTTTTAATGTCTCTACTAA 58.839 36.000 5.66 0.00 0.00 2.24
588 589 6.816640 TGCGCAGTTTTAATGTCTCTACTAAT 59.183 34.615 5.66 0.00 0.00 1.73
589 590 7.333423 TGCGCAGTTTTAATGTCTCTACTAATT 59.667 33.333 5.66 0.00 0.00 1.40
590 591 8.814235 GCGCAGTTTTAATGTCTCTACTAATTA 58.186 33.333 0.30 0.00 0.00 1.40
612 613 9.516314 AATTACAACTTCTTTTAAAGCACTGTC 57.484 29.630 0.00 0.00 0.00 3.51
613 614 6.759497 ACAACTTCTTTTAAAGCACTGTCT 57.241 33.333 0.00 0.00 0.00 3.41
665 666 1.592131 AAACGCGCCGTGTGTCTTA 60.592 52.632 5.73 0.00 41.44 2.10
671 672 0.719465 CGCCGTGTGTCTTAACCATC 59.281 55.000 0.00 0.00 0.00 3.51
683 684 5.016831 GTCTTAACCATCCCCAATCAGTTT 58.983 41.667 0.00 0.00 0.00 2.66
708 709 3.278574 TCCTTCTCAAACACAACACAGG 58.721 45.455 0.00 0.00 0.00 4.00
709 710 3.016736 CCTTCTCAAACACAACACAGGT 58.983 45.455 0.00 0.00 0.00 4.00
710 711 3.443681 CCTTCTCAAACACAACACAGGTT 59.556 43.478 0.00 0.00 37.87 3.50
756 757 7.227512 CCGCAAATCCTCTCAACTAATCTTAAT 59.772 37.037 0.00 0.00 0.00 1.40
780 781 0.322187 ACCCGCGCAAATCTTAACCT 60.322 50.000 8.75 0.00 0.00 3.50
828 835 3.305516 GCACCCCAACAGCCCAAG 61.306 66.667 0.00 0.00 0.00 3.61
1052 1060 4.500116 GTCGCCCGTCTCCTGCTC 62.500 72.222 0.00 0.00 0.00 4.26
1236 1244 3.080153 TCCCCTTCTTAAACCCTAGACCT 59.920 47.826 0.00 0.00 0.00 3.85
1238 1246 5.034878 CCCCTTCTTAAACCCTAGACCTAA 58.965 45.833 0.00 0.00 0.00 2.69
1247 1255 4.857130 ACCCTAGACCTAAAACCCAATC 57.143 45.455 0.00 0.00 0.00 2.67
1289 1300 1.066430 GGTACTCGGCATTCCAGTCAA 60.066 52.381 0.00 0.00 0.00 3.18
1298 1309 3.181493 GGCATTCCAGTCAATGTGTCATC 60.181 47.826 0.00 0.00 36.32 2.92
1496 1545 1.002544 AGCCAGCTTGGTCTAACTGTC 59.997 52.381 4.45 0.00 40.46 3.51
1505 1554 3.879998 TGGTCTAACTGTCAGTGCAAAA 58.120 40.909 6.18 0.00 0.00 2.44
1521 1570 5.807011 AGTGCAAAACAAGATTTCACACTTC 59.193 36.000 0.00 0.00 35.08 3.01
1522 1571 5.576384 GTGCAAAACAAGATTTCACACTTCA 59.424 36.000 0.00 0.00 0.00 3.02
1523 1572 6.256321 GTGCAAAACAAGATTTCACACTTCAT 59.744 34.615 0.00 0.00 0.00 2.57
1526 1575 8.177013 GCAAAACAAGATTTCACACTTCATTTT 58.823 29.630 0.00 0.00 0.00 1.82
1671 1720 3.891366 ACCATTGTAATAAGGAGGCATGC 59.109 43.478 9.90 9.90 0.00 4.06
1911 1960 5.536538 GGTTTCTTTTCCTTCTGGATCTTGT 59.463 40.000 0.00 0.00 42.81 3.16
1922 1971 7.070074 TCCTTCTGGATCTTGTTCTATCTAACC 59.930 40.741 0.00 0.00 37.46 2.85
2185 2239 3.559242 GGCTTGCTGTTCTCTATAAGCAG 59.441 47.826 0.00 0.00 45.68 4.24
2186 2240 4.187694 GCTTGCTGTTCTCTATAAGCAGT 58.812 43.478 0.00 0.00 45.68 4.40
2272 2337 1.531423 CCACTGTCATGCTTCTTGCT 58.469 50.000 0.00 0.00 43.37 3.91
2290 2355 1.734465 GCTTGCATGAACGCTAACTCT 59.266 47.619 3.33 0.00 0.00 3.24
2291 2356 2.160417 GCTTGCATGAACGCTAACTCTT 59.840 45.455 3.33 0.00 0.00 2.85
2292 2357 3.365364 GCTTGCATGAACGCTAACTCTTT 60.365 43.478 3.33 0.00 0.00 2.52
2328 2394 0.322187 ATTTACCTGTCGGTGCCCAC 60.322 55.000 0.00 0.00 45.18 4.61
2340 2406 2.418628 CGGTGCCCACTTAACTTGTATG 59.581 50.000 0.00 0.00 0.00 2.39
2481 2547 8.525316 TGTCTTATGATTTGCTCATCACATTTT 58.475 29.630 1.01 0.00 43.70 1.82
2522 2588 6.961360 TCTGAGATACGTCTGTCCATTTAT 57.039 37.500 0.00 0.00 33.97 1.40
2523 2589 8.350722 GTTCTGAGATACGTCTGTCCATTTATA 58.649 37.037 0.00 0.00 33.97 0.98
2665 2731 3.795688 AAGTTGGCTCCTTCAAGATGA 57.204 42.857 0.00 0.00 0.00 2.92
2678 2744 8.648557 TCCTTCAAGATGACAATAGTTAATCG 57.351 34.615 0.00 0.00 0.00 3.34
2691 2757 6.919775 ATAGTTAATCGCCCTTGTATCTCT 57.080 37.500 0.00 0.00 0.00 3.10
2823 2893 7.867403 AGCATGAAAAGGTACAAACACAAATAG 59.133 33.333 0.00 0.00 0.00 1.73
2837 2907 9.891828 CAAACACAAATAGTTACTTGCTTATGA 57.108 29.630 0.00 0.00 0.00 2.15
3122 3193 0.034477 CGCCCTTCCCTGTAACCAAT 60.034 55.000 0.00 0.00 0.00 3.16
3349 3420 6.017357 GTGCTGATGCTGATGAGATAATTCAA 60.017 38.462 0.00 0.00 40.48 2.69
3361 3432 7.539712 TGAGATAATTCAAAGGTAAGCTTCG 57.460 36.000 0.00 0.00 0.00 3.79
3376 3447 3.831715 GCTTCGTAGCTGTTGGATTTT 57.168 42.857 6.80 0.00 44.27 1.82
3468 3548 5.728637 AATCTGTGAAAAATTCCTGGGTC 57.271 39.130 0.00 0.00 0.00 4.46
4083 4169 8.196802 TCATCTTAAGTAATGTCATTCCGTTG 57.803 34.615 0.07 0.00 0.00 4.10
4209 4295 3.812053 AGCTTGTGTCTGCTAAAAGTCAG 59.188 43.478 0.00 0.00 37.81 3.51
4527 4619 4.067896 CTGTTGTGCTATTGACTCTGGTT 58.932 43.478 0.00 0.00 0.00 3.67
4528 4620 4.460263 TGTTGTGCTATTGACTCTGGTTT 58.540 39.130 0.00 0.00 0.00 3.27
4590 4682 7.831193 AGCAGAAGTTTGTTCTATTCCATGTAT 59.169 33.333 0.00 0.00 0.00 2.29
4591 4683 7.912250 GCAGAAGTTTGTTCTATTCCATGTATG 59.088 37.037 0.00 0.00 0.00 2.39
4648 4740 6.985188 ACAATCTGATAATACACGTGCTTT 57.015 33.333 17.22 12.01 0.00 3.51
5055 5147 4.629634 CAGTAGCAAATGTGAACACCGATA 59.370 41.667 2.46 0.00 0.00 2.92
5087 5179 0.951040 AGCCAGCAGACTACGCAAAC 60.951 55.000 0.00 0.00 0.00 2.93
5135 5227 1.403323 GCAGAGAATACCCAAGCAAGC 59.597 52.381 0.00 0.00 0.00 4.01
5156 5248 3.116300 CGAACATAGTTCCACCGATGAG 58.884 50.000 4.47 0.00 0.00 2.90
5162 5254 0.179000 GTTCCACCGATGAGGATGCT 59.821 55.000 0.00 0.00 45.00 3.79
5279 5371 5.569026 CGGATCTGATTCTCATGGTGATCAT 60.569 44.000 0.00 0.00 36.31 2.45
5316 5408 1.202698 AGCAAGAGACCGAGCAAGTTT 60.203 47.619 0.00 0.00 0.00 2.66
5336 5428 5.129320 AGTTTTGGAGACAGAAAGCCAAATT 59.871 36.000 0.00 0.00 46.31 1.82
5493 5585 6.567891 GCCACTAGTTAATGAGGAACAACAAC 60.568 42.308 0.00 0.00 0.00 3.32
6038 6130 6.323739 TGATTTTTAAGTTTCTGCACCCTTCT 59.676 34.615 0.00 0.00 0.00 2.85
6161 6266 6.018669 GGCATTCGTTCTATGTCTTCCTAAAG 60.019 42.308 0.00 0.00 0.00 1.85
6164 6269 5.266788 TCGTTCTATGTCTTCCTAAAGGGA 58.733 41.667 0.00 0.00 43.41 4.20
6570 6677 6.370593 GTGCGATTTCAAAATACAGTCTTGA 58.629 36.000 0.00 0.00 0.00 3.02
6587 6694 7.657761 ACAGTCTTGATAAATTTCAGTCGACTT 59.342 33.333 17.26 2.43 32.25 3.01
6589 6696 9.877178 AGTCTTGATAAATTTCAGTCGACTTAT 57.123 29.630 17.26 10.14 31.36 1.73
6596 6719 7.962964 AAATTTCAGTCGACTTATGTCTCAA 57.037 32.000 17.26 0.00 40.86 3.02
6603 6726 4.147306 GTCGACTTATGTCTCAATCGATGC 59.853 45.833 8.70 0.00 40.34 3.91
6640 6763 8.216423 AGATCTTACATTAGGATCTGTGCAAAT 58.784 33.333 6.95 0.00 46.12 2.32
6740 6924 8.706936 CATATTTAGAACCATCTCTGATTCACG 58.293 37.037 0.00 0.00 37.10 4.35
6744 6928 2.831333 ACCATCTCTGATTCACGCATC 58.169 47.619 0.00 0.00 0.00 3.91
6750 6934 0.107508 CTGATTCACGCATCCACCCT 60.108 55.000 0.00 0.00 0.00 4.34
6816 7000 9.893305 ATCACTTGACTAAAAATAAAACGGAAG 57.107 29.630 0.00 0.00 0.00 3.46
6854 7200 2.046314 CGGATGCGTCACCCCTTT 60.046 61.111 8.47 0.00 0.00 3.11
6855 7201 2.398554 CGGATGCGTCACCCCTTTG 61.399 63.158 8.47 0.00 0.00 2.77
6864 7210 2.551032 CGTCACCCCTTTGAAAAGTACC 59.449 50.000 2.33 0.00 34.20 3.34
6866 7212 3.955551 GTCACCCCTTTGAAAAGTACCAA 59.044 43.478 2.33 0.00 34.20 3.67
6883 7229 1.303309 CAAAGGCCTAGGCGAGATTG 58.697 55.000 27.24 22.15 43.06 2.67
6899 7246 7.610305 AGGCGAGATTGGATTTAGTTAAAGAAA 59.390 33.333 0.00 0.00 0.00 2.52
6933 7280 5.475564 GTCTAGCCACACCCTTCAAAATAAA 59.524 40.000 0.00 0.00 0.00 1.40
6936 7283 4.653801 AGCCACACCCTTCAAAATAAAACT 59.346 37.500 0.00 0.00 0.00 2.66
6937 7284 4.749598 GCCACACCCTTCAAAATAAAACTG 59.250 41.667 0.00 0.00 0.00 3.16
6938 7285 5.683770 GCCACACCCTTCAAAATAAAACTGT 60.684 40.000 0.00 0.00 0.00 3.55
6939 7286 5.983118 CCACACCCTTCAAAATAAAACTGTC 59.017 40.000 0.00 0.00 0.00 3.51
6940 7287 6.406400 CCACACCCTTCAAAATAAAACTGTCA 60.406 38.462 0.00 0.00 0.00 3.58
6941 7288 7.209475 CACACCCTTCAAAATAAAACTGTCAT 58.791 34.615 0.00 0.00 0.00 3.06
6942 7289 7.169645 CACACCCTTCAAAATAAAACTGTCATG 59.830 37.037 0.00 0.00 0.00 3.07
6943 7290 6.146021 CACCCTTCAAAATAAAACTGTCATGC 59.854 38.462 0.00 0.00 0.00 4.06
6944 7291 6.041979 ACCCTTCAAAATAAAACTGTCATGCT 59.958 34.615 0.00 0.00 0.00 3.79
6945 7292 6.930722 CCCTTCAAAATAAAACTGTCATGCTT 59.069 34.615 0.00 0.00 0.00 3.91
6946 7293 8.087750 CCCTTCAAAATAAAACTGTCATGCTTA 58.912 33.333 0.00 0.00 0.00 3.09
6947 7294 8.915654 CCTTCAAAATAAAACTGTCATGCTTAC 58.084 33.333 0.00 0.00 0.00 2.34
6948 7295 8.810652 TTCAAAATAAAACTGTCATGCTTACC 57.189 30.769 0.00 0.00 0.00 2.85
6949 7296 7.081349 TCAAAATAAAACTGTCATGCTTACCG 58.919 34.615 0.00 0.00 0.00 4.02
6950 7297 2.989422 AAAACTGTCATGCTTACCGC 57.011 45.000 0.00 0.00 39.77 5.68
6963 7310 5.637006 TGCTTACCGCATTCTTATTTTGT 57.363 34.783 0.00 0.00 45.47 2.83
6964 7311 6.745159 TGCTTACCGCATTCTTATTTTGTA 57.255 33.333 0.00 0.00 45.47 2.41
6965 7312 6.548171 TGCTTACCGCATTCTTATTTTGTAC 58.452 36.000 0.00 0.00 45.47 2.90
6966 7313 5.675444 GCTTACCGCATTCTTATTTTGTACG 59.325 40.000 0.00 0.00 38.92 3.67
6967 7314 6.455913 GCTTACCGCATTCTTATTTTGTACGA 60.456 38.462 0.00 0.00 38.92 3.43
6968 7315 5.212589 ACCGCATTCTTATTTTGTACGAC 57.787 39.130 0.00 0.00 0.00 4.34
6969 7316 4.093850 ACCGCATTCTTATTTTGTACGACC 59.906 41.667 0.00 0.00 0.00 4.79
6970 7317 4.260670 CGCATTCTTATTTTGTACGACCG 58.739 43.478 0.00 0.00 0.00 4.79
6971 7318 4.201647 CGCATTCTTATTTTGTACGACCGT 60.202 41.667 0.00 0.00 0.00 4.83
6972 7319 5.624292 GCATTCTTATTTTGTACGACCGTT 58.376 37.500 0.00 0.00 0.00 4.44
6973 7320 5.506832 GCATTCTTATTTTGTACGACCGTTG 59.493 40.000 0.00 0.00 0.00 4.10
6974 7321 6.595794 CATTCTTATTTTGTACGACCGTTGT 58.404 36.000 0.00 0.00 0.00 3.32
6975 7322 6.601741 TTCTTATTTTGTACGACCGTTGTT 57.398 33.333 0.00 0.00 0.00 2.83
6976 7323 6.601741 TCTTATTTTGTACGACCGTTGTTT 57.398 33.333 0.00 0.00 0.00 2.83
6977 7324 6.648502 TCTTATTTTGTACGACCGTTGTTTC 58.351 36.000 0.00 0.00 0.00 2.78
6978 7325 6.479660 TCTTATTTTGTACGACCGTTGTTTCT 59.520 34.615 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.832384 ACTTATACAAGTTCCTCGGACTATGA 59.168 38.462 0.00 0.00 42.51 2.15
1 2 7.040473 ACTTATACAAGTTCCTCGGACTATG 57.960 40.000 0.00 0.00 42.51 2.23
2 3 6.832384 TGACTTATACAAGTTCCTCGGACTAT 59.168 38.462 0.00 0.00 45.18 2.12
3 4 6.182627 TGACTTATACAAGTTCCTCGGACTA 58.817 40.000 0.00 0.00 45.18 2.59
4 5 5.014858 TGACTTATACAAGTTCCTCGGACT 58.985 41.667 0.00 0.00 45.18 3.85
5 6 5.320549 TGACTTATACAAGTTCCTCGGAC 57.679 43.478 0.00 0.00 45.18 4.79
6 7 5.655090 TCATGACTTATACAAGTTCCTCGGA 59.345 40.000 0.00 0.00 45.18 4.55
7 8 5.902681 TCATGACTTATACAAGTTCCTCGG 58.097 41.667 0.00 0.00 45.18 4.63
8 9 7.258441 TCTTCATGACTTATACAAGTTCCTCG 58.742 38.462 0.00 0.00 45.18 4.63
9 10 9.436957 TTTCTTCATGACTTATACAAGTTCCTC 57.563 33.333 0.00 0.00 45.18 3.71
10 11 9.793259 TTTTCTTCATGACTTATACAAGTTCCT 57.207 29.630 0.00 0.00 45.18 3.36
12 13 9.548208 GCTTTTCTTCATGACTTATACAAGTTC 57.452 33.333 0.00 0.00 45.18 3.01
13 14 9.066892 TGCTTTTCTTCATGACTTATACAAGTT 57.933 29.630 0.00 0.00 45.18 2.66
15 16 8.725148 ACTGCTTTTCTTCATGACTTATACAAG 58.275 33.333 0.00 0.00 37.81 3.16
16 17 8.621532 ACTGCTTTTCTTCATGACTTATACAA 57.378 30.769 0.00 0.00 0.00 2.41
17 18 9.371136 CTACTGCTTTTCTTCATGACTTATACA 57.629 33.333 0.00 0.00 0.00 2.29
18 19 8.331742 GCTACTGCTTTTCTTCATGACTTATAC 58.668 37.037 0.00 0.00 36.03 1.47
19 20 8.040727 TGCTACTGCTTTTCTTCATGACTTATA 58.959 33.333 0.00 0.00 40.48 0.98
20 21 6.881065 TGCTACTGCTTTTCTTCATGACTTAT 59.119 34.615 0.00 0.00 40.48 1.73
21 22 6.230472 TGCTACTGCTTTTCTTCATGACTTA 58.770 36.000 0.00 0.00 40.48 2.24
22 23 5.065914 TGCTACTGCTTTTCTTCATGACTT 58.934 37.500 0.00 0.00 40.48 3.01
23 24 4.645535 TGCTACTGCTTTTCTTCATGACT 58.354 39.130 0.00 0.00 40.48 3.41
24 25 5.362556 TTGCTACTGCTTTTCTTCATGAC 57.637 39.130 0.00 0.00 40.48 3.06
25 26 5.706833 TCATTGCTACTGCTTTTCTTCATGA 59.293 36.000 0.00 0.00 40.48 3.07
26 27 5.946298 TCATTGCTACTGCTTTTCTTCATG 58.054 37.500 0.00 0.00 40.48 3.07
27 28 6.579666 TTCATTGCTACTGCTTTTCTTCAT 57.420 33.333 0.00 0.00 40.48 2.57
28 29 6.039717 AGTTTCATTGCTACTGCTTTTCTTCA 59.960 34.615 0.00 0.00 40.48 3.02
29 30 6.442112 AGTTTCATTGCTACTGCTTTTCTTC 58.558 36.000 0.00 0.00 40.48 2.87
30 31 6.396829 AGTTTCATTGCTACTGCTTTTCTT 57.603 33.333 0.00 0.00 40.48 2.52
31 32 7.013274 TGTTAGTTTCATTGCTACTGCTTTTCT 59.987 33.333 0.00 0.00 40.48 2.52
32 33 7.113544 GTGTTAGTTTCATTGCTACTGCTTTTC 59.886 37.037 0.00 0.00 40.48 2.29
33 34 6.918022 GTGTTAGTTTCATTGCTACTGCTTTT 59.082 34.615 0.00 0.00 40.48 2.27
34 35 6.039270 TGTGTTAGTTTCATTGCTACTGCTTT 59.961 34.615 0.00 0.00 40.48 3.51
35 36 5.530915 TGTGTTAGTTTCATTGCTACTGCTT 59.469 36.000 0.00 0.00 40.48 3.91
36 37 5.063204 TGTGTTAGTTTCATTGCTACTGCT 58.937 37.500 0.00 0.00 40.48 4.24
37 38 5.356882 TGTGTTAGTTTCATTGCTACTGC 57.643 39.130 0.00 0.00 40.20 4.40
38 39 7.584108 TGATTGTGTTAGTTTCATTGCTACTG 58.416 34.615 0.00 0.00 0.00 2.74
39 40 7.744087 TGATTGTGTTAGTTTCATTGCTACT 57.256 32.000 0.00 0.00 0.00 2.57
42 43 9.577110 CATTATGATTGTGTTAGTTTCATTGCT 57.423 29.630 0.00 0.00 0.00 3.91
43 44 8.323140 GCATTATGATTGTGTTAGTTTCATTGC 58.677 33.333 0.00 0.00 0.00 3.56
44 45 9.577110 AGCATTATGATTGTGTTAGTTTCATTG 57.423 29.630 0.00 0.00 0.00 2.82
48 49 9.226345 GCTTAGCATTATGATTGTGTTAGTTTC 57.774 33.333 0.00 0.00 0.00 2.78
49 50 8.960591 AGCTTAGCATTATGATTGTGTTAGTTT 58.039 29.630 7.07 0.00 0.00 2.66
50 51 8.511604 AGCTTAGCATTATGATTGTGTTAGTT 57.488 30.769 7.07 0.00 0.00 2.24
51 52 9.613428 TTAGCTTAGCATTATGATTGTGTTAGT 57.387 29.630 7.07 0.00 0.00 2.24
52 53 9.869844 GTTAGCTTAGCATTATGATTGTGTTAG 57.130 33.333 7.07 0.00 0.00 2.34
53 54 9.389755 TGTTAGCTTAGCATTATGATTGTGTTA 57.610 29.630 7.07 0.00 0.00 2.41
54 55 8.279970 TGTTAGCTTAGCATTATGATTGTGTT 57.720 30.769 7.07 0.00 0.00 3.32
55 56 7.770433 TCTGTTAGCTTAGCATTATGATTGTGT 59.230 33.333 7.07 0.00 0.00 3.72
56 57 8.146479 TCTGTTAGCTTAGCATTATGATTGTG 57.854 34.615 7.07 0.00 0.00 3.33
57 58 8.781196 CATCTGTTAGCTTAGCATTATGATTGT 58.219 33.333 7.07 0.00 0.00 2.71
58 59 8.235226 CCATCTGTTAGCTTAGCATTATGATTG 58.765 37.037 7.07 0.00 0.00 2.67
59 60 7.392673 CCCATCTGTTAGCTTAGCATTATGATT 59.607 37.037 7.07 0.00 0.00 2.57
60 61 6.883217 CCCATCTGTTAGCTTAGCATTATGAT 59.117 38.462 7.07 1.81 0.00 2.45
61 62 6.183361 ACCCATCTGTTAGCTTAGCATTATGA 60.183 38.462 7.07 0.00 0.00 2.15
62 63 6.000219 ACCCATCTGTTAGCTTAGCATTATG 59.000 40.000 7.07 1.50 0.00 1.90
63 64 6.192970 ACCCATCTGTTAGCTTAGCATTAT 57.807 37.500 7.07 0.00 0.00 1.28
64 65 5.611374 GACCCATCTGTTAGCTTAGCATTA 58.389 41.667 7.07 0.00 0.00 1.90
65 66 4.455606 GACCCATCTGTTAGCTTAGCATT 58.544 43.478 7.07 0.00 0.00 3.56
66 67 3.493350 CGACCCATCTGTTAGCTTAGCAT 60.493 47.826 7.07 0.00 0.00 3.79
67 68 2.159099 CGACCCATCTGTTAGCTTAGCA 60.159 50.000 7.07 0.00 0.00 3.49
68 69 2.159085 ACGACCCATCTGTTAGCTTAGC 60.159 50.000 0.00 0.00 0.00 3.09
69 70 3.119101 ACACGACCCATCTGTTAGCTTAG 60.119 47.826 0.00 0.00 0.00 2.18
70 71 2.829720 ACACGACCCATCTGTTAGCTTA 59.170 45.455 0.00 0.00 0.00 3.09
71 72 1.623811 ACACGACCCATCTGTTAGCTT 59.376 47.619 0.00 0.00 0.00 3.74
72 73 1.204941 GACACGACCCATCTGTTAGCT 59.795 52.381 0.00 0.00 0.00 3.32
73 74 1.641577 GACACGACCCATCTGTTAGC 58.358 55.000 0.00 0.00 0.00 3.09
74 75 1.548719 TGGACACGACCCATCTGTTAG 59.451 52.381 0.00 0.00 0.00 2.34
75 76 1.634960 TGGACACGACCCATCTGTTA 58.365 50.000 0.00 0.00 0.00 2.41
76 77 0.984230 ATGGACACGACCCATCTGTT 59.016 50.000 0.00 0.00 40.16 3.16
77 78 2.683916 ATGGACACGACCCATCTGT 58.316 52.632 0.00 0.00 40.16 3.41
81 82 2.972021 TGATATGATGGACACGACCCAT 59.028 45.455 7.49 7.49 46.40 4.00
82 83 2.393646 TGATATGATGGACACGACCCA 58.606 47.619 0.00 0.00 38.19 4.51
83 84 3.685139 ATGATATGATGGACACGACCC 57.315 47.619 0.00 0.00 0.00 4.46
84 85 4.887748 AGAATGATATGATGGACACGACC 58.112 43.478 0.00 0.00 0.00 4.79
85 86 4.926238 GGAGAATGATATGATGGACACGAC 59.074 45.833 0.00 0.00 0.00 4.34
86 87 4.835056 AGGAGAATGATATGATGGACACGA 59.165 41.667 0.00 0.00 0.00 4.35
87 88 5.144692 AGGAGAATGATATGATGGACACG 57.855 43.478 0.00 0.00 0.00 4.49
88 89 8.316946 TCATTAGGAGAATGATATGATGGACAC 58.683 37.037 0.00 0.00 32.21 3.67
89 90 8.439964 TCATTAGGAGAATGATATGATGGACA 57.560 34.615 0.00 0.00 32.21 4.02
90 91 9.327628 CATCATTAGGAGAATGATATGATGGAC 57.672 37.037 11.40 0.00 43.38 4.02
91 92 9.054580 ACATCATTAGGAGAATGATATGATGGA 57.945 33.333 20.51 0.00 46.80 3.41
92 93 9.110502 CACATCATTAGGAGAATGATATGATGG 57.889 37.037 20.51 10.34 46.80 3.51
93 94 9.886132 TCACATCATTAGGAGAATGATATGATG 57.114 33.333 14.26 16.89 42.36 3.07
94 95 9.887629 GTCACATCATTAGGAGAATGATATGAT 57.112 33.333 18.91 0.00 46.12 2.45
95 96 8.316946 GGTCACATCATTAGGAGAATGATATGA 58.683 37.037 14.26 14.26 43.95 2.15
96 97 7.551974 GGGTCACATCATTAGGAGAATGATATG 59.448 40.741 11.40 11.09 43.38 1.78
97 98 7.311549 GGGGTCACATCATTAGGAGAATGATAT 60.312 40.741 11.40 0.00 43.38 1.63
98 99 6.013379 GGGGTCACATCATTAGGAGAATGATA 60.013 42.308 11.40 0.00 43.38 2.15
99 100 5.222007 GGGGTCACATCATTAGGAGAATGAT 60.222 44.000 6.90 6.90 45.40 2.45
100 101 4.103153 GGGGTCACATCATTAGGAGAATGA 59.897 45.833 2.66 2.66 40.50 2.57
101 102 4.392940 GGGGTCACATCATTAGGAGAATG 58.607 47.826 0.00 0.00 0.00 2.67
102 103 3.071602 CGGGGTCACATCATTAGGAGAAT 59.928 47.826 0.00 0.00 0.00 2.40
103 104 2.434336 CGGGGTCACATCATTAGGAGAA 59.566 50.000 0.00 0.00 0.00 2.87
104 105 2.039418 CGGGGTCACATCATTAGGAGA 58.961 52.381 0.00 0.00 0.00 3.71
105 106 1.762957 ACGGGGTCACATCATTAGGAG 59.237 52.381 0.00 0.00 0.00 3.69
106 107 1.874129 ACGGGGTCACATCATTAGGA 58.126 50.000 0.00 0.00 0.00 2.94
107 108 2.093181 TGAACGGGGTCACATCATTAGG 60.093 50.000 0.00 0.00 0.00 2.69
108 109 3.260475 TGAACGGGGTCACATCATTAG 57.740 47.619 0.00 0.00 0.00 1.73
109 110 3.198853 TGATGAACGGGGTCACATCATTA 59.801 43.478 0.00 0.00 42.31 1.90
110 111 2.026356 TGATGAACGGGGTCACATCATT 60.026 45.455 0.00 0.00 42.31 2.57
111 112 1.559219 TGATGAACGGGGTCACATCAT 59.441 47.619 0.00 0.00 42.31 2.45
112 113 0.980423 TGATGAACGGGGTCACATCA 59.020 50.000 0.00 0.00 44.05 3.07
113 114 2.107950 TTGATGAACGGGGTCACATC 57.892 50.000 0.00 0.00 39.35 3.06
114 115 2.577606 TTTGATGAACGGGGTCACAT 57.422 45.000 0.00 0.00 0.00 3.21
115 116 2.158559 CATTTGATGAACGGGGTCACA 58.841 47.619 0.00 0.00 0.00 3.58
116 117 2.161609 GTCATTTGATGAACGGGGTCAC 59.838 50.000 0.00 0.00 41.69 3.67
117 118 2.224646 TGTCATTTGATGAACGGGGTCA 60.225 45.455 0.00 0.00 41.69 4.02
118 119 2.432444 TGTCATTTGATGAACGGGGTC 58.568 47.619 0.00 0.00 41.69 4.46
119 120 2.556622 GTTGTCATTTGATGAACGGGGT 59.443 45.455 0.00 0.00 41.69 4.95
120 121 2.556189 TGTTGTCATTTGATGAACGGGG 59.444 45.455 0.00 0.00 41.69 5.73
121 122 3.004210 TGTGTTGTCATTTGATGAACGGG 59.996 43.478 0.00 0.00 41.69 5.28
122 123 4.221926 TGTGTTGTCATTTGATGAACGG 57.778 40.909 0.00 0.00 41.69 4.44
123 124 5.214417 ACATGTGTTGTCATTTGATGAACG 58.786 37.500 0.00 0.00 41.69 3.95
136 137 5.755409 TCCTAACCATAGACATGTGTTGT 57.245 39.130 1.15 0.00 42.79 3.32
137 138 6.429692 TGTTTCCTAACCATAGACATGTGTTG 59.570 38.462 1.15 0.54 33.15 3.33
138 139 6.539173 TGTTTCCTAACCATAGACATGTGTT 58.461 36.000 1.15 3.14 33.15 3.32
139 140 6.121776 TGTTTCCTAACCATAGACATGTGT 57.878 37.500 1.15 0.22 33.15 3.72
140 141 8.612619 GTTATGTTTCCTAACCATAGACATGTG 58.387 37.037 1.15 0.00 30.80 3.21
141 142 7.773690 GGTTATGTTTCCTAACCATAGACATGT 59.226 37.037 0.00 0.00 44.95 3.21
142 143 8.154649 GGTTATGTTTCCTAACCATAGACATG 57.845 38.462 7.24 0.00 44.95 3.21
158 159 9.730420 GCTCGTTAATCAAATATGGTTATGTTT 57.270 29.630 0.00 0.00 32.32 2.83
159 160 9.120538 AGCTCGTTAATCAAATATGGTTATGTT 57.879 29.630 0.00 0.00 32.32 2.71
160 161 8.677148 AGCTCGTTAATCAAATATGGTTATGT 57.323 30.769 0.00 0.00 32.32 2.29
162 163 9.998106 ACTAGCTCGTTAATCAAATATGGTTAT 57.002 29.630 0.00 0.00 32.32 1.89
163 164 9.472361 GACTAGCTCGTTAATCAAATATGGTTA 57.528 33.333 0.00 0.00 30.84 2.85
164 165 7.985184 TGACTAGCTCGTTAATCAAATATGGTT 59.015 33.333 0.00 0.00 33.49 3.67
165 166 7.497595 TGACTAGCTCGTTAATCAAATATGGT 58.502 34.615 0.00 0.00 0.00 3.55
166 167 7.946655 TGACTAGCTCGTTAATCAAATATGG 57.053 36.000 0.00 0.00 0.00 2.74
167 168 9.035607 ACTTGACTAGCTCGTTAATCAAATATG 57.964 33.333 0.00 0.00 0.00 1.78
169 170 9.731819 CTACTTGACTAGCTCGTTAATCAAATA 57.268 33.333 0.00 0.00 0.00 1.40
170 171 8.467598 TCTACTTGACTAGCTCGTTAATCAAAT 58.532 33.333 0.00 0.00 0.00 2.32
171 172 7.823665 TCTACTTGACTAGCTCGTTAATCAAA 58.176 34.615 0.00 0.00 0.00 2.69
172 173 7.387119 TCTACTTGACTAGCTCGTTAATCAA 57.613 36.000 0.00 0.00 0.00 2.57
173 174 6.038382 CCTCTACTTGACTAGCTCGTTAATCA 59.962 42.308 0.00 0.00 0.00 2.57
174 175 6.432107 CCTCTACTTGACTAGCTCGTTAATC 58.568 44.000 0.00 0.00 0.00 1.75
175 176 5.221087 GCCTCTACTTGACTAGCTCGTTAAT 60.221 44.000 0.00 0.00 0.00 1.40
176 177 4.096081 GCCTCTACTTGACTAGCTCGTTAA 59.904 45.833 0.00 0.00 0.00 2.01
177 178 3.626670 GCCTCTACTTGACTAGCTCGTTA 59.373 47.826 0.00 0.00 0.00 3.18
178 179 2.424246 GCCTCTACTTGACTAGCTCGTT 59.576 50.000 0.00 0.00 0.00 3.85
179 180 2.018515 GCCTCTACTTGACTAGCTCGT 58.981 52.381 0.00 0.00 0.00 4.18
180 181 2.017782 TGCCTCTACTTGACTAGCTCG 58.982 52.381 0.00 0.00 0.00 5.03
181 182 4.825085 AGTATGCCTCTACTTGACTAGCTC 59.175 45.833 0.00 0.00 0.00 4.09
182 183 4.798882 AGTATGCCTCTACTTGACTAGCT 58.201 43.478 0.00 0.00 0.00 3.32
183 184 5.766174 ACTAGTATGCCTCTACTTGACTAGC 59.234 44.000 0.00 0.00 38.86 3.42
184 185 6.993308 TCACTAGTATGCCTCTACTTGACTAG 59.007 42.308 0.00 0.00 40.35 2.57
185 186 6.766944 GTCACTAGTATGCCTCTACTTGACTA 59.233 42.308 0.00 0.00 36.95 2.59
186 187 5.591067 GTCACTAGTATGCCTCTACTTGACT 59.409 44.000 0.00 0.00 36.95 3.41
187 188 5.357314 TGTCACTAGTATGCCTCTACTTGAC 59.643 44.000 0.00 11.98 38.64 3.18
188 189 5.357314 GTGTCACTAGTATGCCTCTACTTGA 59.643 44.000 0.00 0.18 33.96 3.02
189 190 5.358442 AGTGTCACTAGTATGCCTCTACTTG 59.642 44.000 2.87 0.00 33.96 3.16
190 191 5.511363 AGTGTCACTAGTATGCCTCTACTT 58.489 41.667 2.87 0.00 33.96 2.24
191 192 5.118729 AGTGTCACTAGTATGCCTCTACT 57.881 43.478 2.87 0.00 36.04 2.57
192 193 6.487331 ACATAGTGTCACTAGTATGCCTCTAC 59.513 42.308 17.43 0.00 37.44 2.59
193 194 6.602278 ACATAGTGTCACTAGTATGCCTCTA 58.398 40.000 17.43 0.00 37.44 2.43
194 195 5.450453 ACATAGTGTCACTAGTATGCCTCT 58.550 41.667 17.43 0.00 37.44 3.69
195 196 5.776173 ACATAGTGTCACTAGTATGCCTC 57.224 43.478 17.43 0.00 37.44 4.70
196 197 6.546428 AAACATAGTGTCACTAGTATGCCT 57.454 37.500 17.43 2.21 37.44 4.75
197 198 7.611213 AAAAACATAGTGTCACTAGTATGCC 57.389 36.000 17.43 0.00 37.44 4.40
226 227 8.705134 CGAAAACTTAGTACATGTGTGAATACA 58.295 33.333 9.11 0.00 34.63 2.29
227 228 8.166706 CCGAAAACTTAGTACATGTGTGAATAC 58.833 37.037 9.11 0.00 0.00 1.89
228 229 7.874016 ACCGAAAACTTAGTACATGTGTGAATA 59.126 33.333 9.11 0.00 0.00 1.75
229 230 6.708949 ACCGAAAACTTAGTACATGTGTGAAT 59.291 34.615 9.11 0.00 0.00 2.57
230 231 6.050432 ACCGAAAACTTAGTACATGTGTGAA 58.950 36.000 9.11 0.00 0.00 3.18
231 232 5.603596 ACCGAAAACTTAGTACATGTGTGA 58.396 37.500 9.11 0.00 0.00 3.58
232 233 5.917541 ACCGAAAACTTAGTACATGTGTG 57.082 39.130 9.11 0.00 0.00 3.82
233 234 8.611654 ATTAACCGAAAACTTAGTACATGTGT 57.388 30.769 9.11 0.00 0.00 3.72
234 235 9.962759 GTATTAACCGAAAACTTAGTACATGTG 57.037 33.333 9.11 0.00 0.00 3.21
235 236 9.709495 TGTATTAACCGAAAACTTAGTACATGT 57.291 29.630 2.69 2.69 0.00 3.21
244 245 9.005777 TGCTAGAATTGTATTAACCGAAAACTT 57.994 29.630 0.00 0.00 0.00 2.66
245 246 8.556213 TGCTAGAATTGTATTAACCGAAAACT 57.444 30.769 0.00 0.00 0.00 2.66
246 247 9.221775 CATGCTAGAATTGTATTAACCGAAAAC 57.778 33.333 0.00 0.00 0.00 2.43
247 248 9.168451 TCATGCTAGAATTGTATTAACCGAAAA 57.832 29.630 0.00 0.00 0.00 2.29
248 249 8.725405 TCATGCTAGAATTGTATTAACCGAAA 57.275 30.769 0.00 0.00 0.00 3.46
249 250 8.725405 TTCATGCTAGAATTGTATTAACCGAA 57.275 30.769 0.00 0.00 0.00 4.30
250 251 8.902540 ATTCATGCTAGAATTGTATTAACCGA 57.097 30.769 0.00 0.00 34.70 4.69
325 326 4.349342 ACTGAAGGAAATATGCCCTAGAGG 59.651 45.833 0.00 0.00 39.47 3.69
326 327 5.306678 AGACTGAAGGAAATATGCCCTAGAG 59.693 44.000 0.00 0.46 31.36 2.43
327 328 5.219739 AGACTGAAGGAAATATGCCCTAGA 58.780 41.667 0.00 0.00 31.36 2.43
328 329 5.559148 AGACTGAAGGAAATATGCCCTAG 57.441 43.478 0.00 0.00 31.36 3.02
329 330 5.163195 GGAAGACTGAAGGAAATATGCCCTA 60.163 44.000 0.00 0.00 31.36 3.53
330 331 4.385754 GGAAGACTGAAGGAAATATGCCCT 60.386 45.833 0.00 0.00 0.00 5.19
331 332 3.885901 GGAAGACTGAAGGAAATATGCCC 59.114 47.826 0.00 0.00 0.00 5.36
332 333 4.336713 GTGGAAGACTGAAGGAAATATGCC 59.663 45.833 0.00 0.00 0.00 4.40
333 334 5.189180 AGTGGAAGACTGAAGGAAATATGC 58.811 41.667 0.00 0.00 31.75 3.14
334 335 6.404074 GCAAGTGGAAGACTGAAGGAAATATG 60.404 42.308 0.00 0.00 34.02 1.78
335 336 5.649831 GCAAGTGGAAGACTGAAGGAAATAT 59.350 40.000 0.00 0.00 34.02 1.28
336 337 5.003804 GCAAGTGGAAGACTGAAGGAAATA 58.996 41.667 0.00 0.00 34.02 1.40
337 338 3.823304 GCAAGTGGAAGACTGAAGGAAAT 59.177 43.478 0.00 0.00 34.02 2.17
338 339 3.214328 GCAAGTGGAAGACTGAAGGAAA 58.786 45.455 0.00 0.00 34.02 3.13
339 340 2.172505 TGCAAGTGGAAGACTGAAGGAA 59.827 45.455 0.00 0.00 34.02 3.36
340 341 1.768275 TGCAAGTGGAAGACTGAAGGA 59.232 47.619 0.00 0.00 34.02 3.36
341 342 1.876156 GTGCAAGTGGAAGACTGAAGG 59.124 52.381 0.00 0.00 34.02 3.46
342 343 2.843701 AGTGCAAGTGGAAGACTGAAG 58.156 47.619 0.00 0.00 34.02 3.02
343 344 3.641436 TCTAGTGCAAGTGGAAGACTGAA 59.359 43.478 0.00 0.00 34.02 3.02
344 345 3.230976 TCTAGTGCAAGTGGAAGACTGA 58.769 45.455 0.00 0.00 34.02 3.41
345 346 3.006323 ACTCTAGTGCAAGTGGAAGACTG 59.994 47.826 0.00 0.00 34.02 3.51
346 347 3.235200 ACTCTAGTGCAAGTGGAAGACT 58.765 45.455 0.00 0.00 35.94 3.24
347 348 3.005897 TGACTCTAGTGCAAGTGGAAGAC 59.994 47.826 0.00 0.00 0.00 3.01
348 349 3.230976 TGACTCTAGTGCAAGTGGAAGA 58.769 45.455 0.00 0.00 0.00 2.87
349 350 3.667497 TGACTCTAGTGCAAGTGGAAG 57.333 47.619 0.00 0.00 0.00 3.46
350 351 4.623932 ATTGACTCTAGTGCAAGTGGAA 57.376 40.909 0.00 0.00 0.00 3.53
351 352 5.738619 TTATTGACTCTAGTGCAAGTGGA 57.261 39.130 0.00 0.00 0.00 4.02
352 353 6.344500 AGATTATTGACTCTAGTGCAAGTGG 58.656 40.000 0.00 0.00 0.00 4.00
353 354 8.409371 TCTAGATTATTGACTCTAGTGCAAGTG 58.591 37.037 0.00 0.00 41.08 3.16
354 355 8.526667 TCTAGATTATTGACTCTAGTGCAAGT 57.473 34.615 0.00 0.00 41.08 3.16
355 356 9.979578 AATCTAGATTATTGACTCTAGTGCAAG 57.020 33.333 16.50 0.00 41.08 4.01
381 382 9.996554 CATGGGTGTTAGAATCATTACTATGTA 57.003 33.333 0.00 0.00 33.34 2.29
382 383 8.713971 TCATGGGTGTTAGAATCATTACTATGT 58.286 33.333 0.00 0.00 33.34 2.29
383 384 9.559732 TTCATGGGTGTTAGAATCATTACTATG 57.440 33.333 0.00 0.00 0.00 2.23
384 385 9.784531 CTTCATGGGTGTTAGAATCATTACTAT 57.215 33.333 0.00 0.00 0.00 2.12
385 386 7.715249 GCTTCATGGGTGTTAGAATCATTACTA 59.285 37.037 0.00 0.00 0.00 1.82
386 387 6.543831 GCTTCATGGGTGTTAGAATCATTACT 59.456 38.462 0.00 0.00 0.00 2.24
387 388 6.543831 AGCTTCATGGGTGTTAGAATCATTAC 59.456 38.462 0.00 0.00 0.00 1.89
388 389 6.662755 AGCTTCATGGGTGTTAGAATCATTA 58.337 36.000 0.00 0.00 0.00 1.90
389 390 5.513233 AGCTTCATGGGTGTTAGAATCATT 58.487 37.500 0.00 0.00 0.00 2.57
390 391 5.121380 AGCTTCATGGGTGTTAGAATCAT 57.879 39.130 0.00 0.00 0.00 2.45
391 392 4.574674 AGCTTCATGGGTGTTAGAATCA 57.425 40.909 0.00 0.00 0.00 2.57
392 393 5.393461 CCAAAGCTTCATGGGTGTTAGAATC 60.393 44.000 9.05 0.00 32.87 2.52
393 394 4.463891 CCAAAGCTTCATGGGTGTTAGAAT 59.536 41.667 9.05 0.00 32.87 2.40
394 395 3.826157 CCAAAGCTTCATGGGTGTTAGAA 59.174 43.478 9.05 0.00 32.87 2.10
395 396 3.181434 ACCAAAGCTTCATGGGTGTTAGA 60.181 43.478 19.12 0.00 41.17 2.10
396 397 3.057315 CACCAAAGCTTCATGGGTGTTAG 60.057 47.826 19.12 2.41 43.08 2.34
397 398 2.890311 CACCAAAGCTTCATGGGTGTTA 59.110 45.455 19.12 0.00 43.08 2.41
398 399 1.688197 CACCAAAGCTTCATGGGTGTT 59.312 47.619 19.12 0.00 43.08 3.32
399 400 1.331214 CACCAAAGCTTCATGGGTGT 58.669 50.000 19.12 0.00 43.08 4.16
401 402 1.688197 CAACACCAAAGCTTCATGGGT 59.312 47.619 19.12 12.68 41.17 4.51
402 403 1.962807 TCAACACCAAAGCTTCATGGG 59.037 47.619 19.12 12.12 41.17 4.00
403 404 3.256383 TGATCAACACCAAAGCTTCATGG 59.744 43.478 14.48 14.48 42.60 3.66
404 405 4.232221 GTGATCAACACCAAAGCTTCATG 58.768 43.478 0.00 0.87 43.05 3.07
405 406 3.058016 CGTGATCAACACCAAAGCTTCAT 60.058 43.478 0.00 0.00 45.73 2.57
406 407 2.290367 CGTGATCAACACCAAAGCTTCA 59.710 45.455 0.00 0.00 45.73 3.02
407 408 2.290641 ACGTGATCAACACCAAAGCTTC 59.709 45.455 0.00 0.00 45.73 3.86
408 409 2.297701 ACGTGATCAACACCAAAGCTT 58.702 42.857 0.00 0.00 45.73 3.74
409 410 1.967319 ACGTGATCAACACCAAAGCT 58.033 45.000 0.00 0.00 45.73 3.74
410 411 2.774439 AACGTGATCAACACCAAAGC 57.226 45.000 0.00 0.00 45.73 3.51
411 412 3.242712 GCAAAACGTGATCAACACCAAAG 59.757 43.478 0.00 0.00 45.73 2.77
412 413 3.119316 AGCAAAACGTGATCAACACCAAA 60.119 39.130 0.00 0.00 45.73 3.28
413 414 2.425312 AGCAAAACGTGATCAACACCAA 59.575 40.909 0.00 0.00 45.73 3.67
414 415 2.020720 AGCAAAACGTGATCAACACCA 58.979 42.857 0.00 0.00 45.73 4.17
415 416 2.650608 GAGCAAAACGTGATCAACACC 58.349 47.619 0.00 0.00 45.73 4.16
416 417 2.286184 ACGAGCAAAACGTGATCAACAC 60.286 45.455 0.00 0.00 43.14 3.32
417 418 1.937223 ACGAGCAAAACGTGATCAACA 59.063 42.857 0.00 0.00 43.14 3.33
418 419 2.663279 ACGAGCAAAACGTGATCAAC 57.337 45.000 0.00 0.00 43.14 3.18
425 426 1.064952 CCTTTTCCACGAGCAAAACGT 59.935 47.619 0.00 0.00 44.83 3.99
426 427 1.753956 CCTTTTCCACGAGCAAAACG 58.246 50.000 0.00 0.00 0.00 3.60
427 428 1.067060 AGCCTTTTCCACGAGCAAAAC 59.933 47.619 0.00 0.00 0.00 2.43
428 429 1.398692 AGCCTTTTCCACGAGCAAAA 58.601 45.000 0.00 0.00 0.00 2.44
429 430 1.398692 AAGCCTTTTCCACGAGCAAA 58.601 45.000 0.00 0.00 0.00 3.68
430 431 2.264005 TAAGCCTTTTCCACGAGCAA 57.736 45.000 0.00 0.00 0.00 3.91
431 432 2.489938 ATAAGCCTTTTCCACGAGCA 57.510 45.000 0.00 0.00 0.00 4.26
432 433 2.747446 TGAATAAGCCTTTTCCACGAGC 59.253 45.455 0.00 0.00 0.00 5.03
433 434 5.335127 CATTGAATAAGCCTTTTCCACGAG 58.665 41.667 0.00 0.00 0.00 4.18
434 435 4.157656 CCATTGAATAAGCCTTTTCCACGA 59.842 41.667 0.00 0.00 0.00 4.35
435 436 4.423732 CCATTGAATAAGCCTTTTCCACG 58.576 43.478 0.00 0.00 0.00 4.94
436 437 4.222810 ACCCATTGAATAAGCCTTTTCCAC 59.777 41.667 0.00 0.00 0.00 4.02
437 438 4.424842 ACCCATTGAATAAGCCTTTTCCA 58.575 39.130 0.00 0.00 0.00 3.53
438 439 4.711846 AGACCCATTGAATAAGCCTTTTCC 59.288 41.667 0.00 0.00 0.00 3.13
439 440 5.654497 CAGACCCATTGAATAAGCCTTTTC 58.346 41.667 0.00 0.00 0.00 2.29
440 441 4.081476 GCAGACCCATTGAATAAGCCTTTT 60.081 41.667 0.00 0.00 0.00 2.27
441 442 3.448660 GCAGACCCATTGAATAAGCCTTT 59.551 43.478 0.00 0.00 0.00 3.11
442 443 3.026694 GCAGACCCATTGAATAAGCCTT 58.973 45.455 0.00 0.00 0.00 4.35
443 444 2.025037 TGCAGACCCATTGAATAAGCCT 60.025 45.455 0.00 0.00 0.00 4.58
444 445 2.378038 TGCAGACCCATTGAATAAGCC 58.622 47.619 0.00 0.00 0.00 4.35
445 446 4.454728 TTTGCAGACCCATTGAATAAGC 57.545 40.909 0.00 0.00 0.00 3.09
473 474 1.347050 CATCAAACCATGGGGCAACAA 59.653 47.619 18.09 0.00 37.90 2.83
474 475 0.975135 CATCAAACCATGGGGCAACA 59.025 50.000 18.09 0.00 37.90 3.33
481 482 1.666209 GCCGTCCCATCAAACCATGG 61.666 60.000 11.19 11.19 42.91 3.66
484 485 1.303236 CAGCCGTCCCATCAAACCA 60.303 57.895 0.00 0.00 0.00 3.67
485 486 0.608035 TTCAGCCGTCCCATCAAACC 60.608 55.000 0.00 0.00 0.00 3.27
487 488 1.988293 TTTTCAGCCGTCCCATCAAA 58.012 45.000 0.00 0.00 0.00 2.69
493 494 1.534729 AGAACATTTTCAGCCGTCCC 58.465 50.000 0.00 0.00 33.72 4.46
500 501 7.384932 GGATTTTGGGTGTTAGAACATTTTCAG 59.615 37.037 0.00 0.00 41.59 3.02
501 502 7.147655 TGGATTTTGGGTGTTAGAACATTTTCA 60.148 33.333 0.00 0.00 41.59 2.69
503 504 7.130681 TGGATTTTGGGTGTTAGAACATTTT 57.869 32.000 0.00 0.00 41.59 1.82
506 507 5.600484 TGTTGGATTTTGGGTGTTAGAACAT 59.400 36.000 0.00 0.00 41.59 2.71
510 511 5.068460 CAGTTGTTGGATTTTGGGTGTTAGA 59.932 40.000 0.00 0.00 0.00 2.10
519 520 8.137437 AGTAGAATTCACAGTTGTTGGATTTTG 58.863 33.333 8.44 0.00 0.00 2.44
527 528 5.760253 CAGGTCAGTAGAATTCACAGTTGTT 59.240 40.000 8.44 0.00 0.00 2.83
530 531 5.540337 TCTCAGGTCAGTAGAATTCACAGTT 59.460 40.000 8.44 0.00 0.00 3.16
531 532 5.080337 TCTCAGGTCAGTAGAATTCACAGT 58.920 41.667 8.44 0.00 0.00 3.55
540 541 6.459066 CAACTTTTCATCTCAGGTCAGTAGA 58.541 40.000 0.00 0.00 0.00 2.59
541 542 5.121454 GCAACTTTTCATCTCAGGTCAGTAG 59.879 44.000 0.00 0.00 0.00 2.57
544 545 3.120408 CGCAACTTTTCATCTCAGGTCAG 60.120 47.826 0.00 0.00 0.00 3.51
586 587 9.516314 GACAGTGCTTTAAAAGAAGTTGTAATT 57.484 29.630 0.00 0.00 0.00 1.40
587 588 8.903820 AGACAGTGCTTTAAAAGAAGTTGTAAT 58.096 29.630 0.00 0.00 0.00 1.89
588 589 8.276252 AGACAGTGCTTTAAAAGAAGTTGTAA 57.724 30.769 0.00 0.00 0.00 2.41
589 590 7.769044 AGAGACAGTGCTTTAAAAGAAGTTGTA 59.231 33.333 0.00 0.00 0.00 2.41
590 591 6.599638 AGAGACAGTGCTTTAAAAGAAGTTGT 59.400 34.615 0.00 0.00 0.00 3.32
591 592 7.020914 AGAGACAGTGCTTTAAAAGAAGTTG 57.979 36.000 0.00 0.00 0.00 3.16
592 593 7.988028 AGTAGAGACAGTGCTTTAAAAGAAGTT 59.012 33.333 0.00 0.00 0.00 2.66
593 594 7.501844 AGTAGAGACAGTGCTTTAAAAGAAGT 58.498 34.615 0.00 0.00 0.00 3.01
594 595 7.954788 AGTAGAGACAGTGCTTTAAAAGAAG 57.045 36.000 0.00 0.00 0.00 2.85
595 596 9.998106 ATTAGTAGAGACAGTGCTTTAAAAGAA 57.002 29.630 0.00 0.00 0.00 2.52
596 597 9.998106 AATTAGTAGAGACAGTGCTTTAAAAGA 57.002 29.630 0.00 0.00 0.00 2.52
605 606 9.171701 CGATTTAGTAATTAGTAGAGACAGTGC 57.828 37.037 0.47 0.00 0.00 4.40
606 607 9.171701 GCGATTTAGTAATTAGTAGAGACAGTG 57.828 37.037 0.47 0.00 0.00 3.66
607 608 8.351461 GGCGATTTAGTAATTAGTAGAGACAGT 58.649 37.037 0.47 0.00 0.00 3.55
608 609 8.350722 TGGCGATTTAGTAATTAGTAGAGACAG 58.649 37.037 0.47 0.00 0.00 3.51
609 610 8.229253 TGGCGATTTAGTAATTAGTAGAGACA 57.771 34.615 0.47 0.58 0.00 3.41
610 611 9.694137 AATGGCGATTTAGTAATTAGTAGAGAC 57.306 33.333 0.47 0.00 0.00 3.36
613 614 9.485206 GGAAATGGCGATTTAGTAATTAGTAGA 57.515 33.333 6.67 0.00 31.58 2.59
683 684 3.442273 GTGTTGTGTTTGAGAAGGAACCA 59.558 43.478 0.00 0.00 0.00 3.67
708 709 3.686726 GGAAGATGATGGTGACTGTCAAC 59.313 47.826 18.70 18.70 33.88 3.18
709 710 3.307691 GGGAAGATGATGGTGACTGTCAA 60.308 47.826 12.81 0.00 31.33 3.18
710 711 2.237143 GGGAAGATGATGGTGACTGTCA 59.763 50.000 6.36 6.36 0.00 3.58
711 712 2.739932 CGGGAAGATGATGGTGACTGTC 60.740 54.545 0.00 0.00 0.00 3.51
712 713 1.208052 CGGGAAGATGATGGTGACTGT 59.792 52.381 0.00 0.00 0.00 3.55
713 714 1.945387 CGGGAAGATGATGGTGACTG 58.055 55.000 0.00 0.00 0.00 3.51
714 715 0.179000 GCGGGAAGATGATGGTGACT 59.821 55.000 0.00 0.00 0.00 3.41
715 716 0.107703 TGCGGGAAGATGATGGTGAC 60.108 55.000 0.00 0.00 0.00 3.67
756 757 0.605319 AAGATTTGCGCGGGTGAAGA 60.605 50.000 8.83 0.00 0.00 2.87
1260 1268 2.288025 GCCGAGTACCCCACCAAGA 61.288 63.158 0.00 0.00 0.00 3.02
1261 1269 1.910580 ATGCCGAGTACCCCACCAAG 61.911 60.000 0.00 0.00 0.00 3.61
1289 1300 2.303890 TGCAGACAGGAAGATGACACAT 59.696 45.455 0.00 0.00 0.00 3.21
1298 1309 1.817357 TGAGCAATGCAGACAGGAAG 58.183 50.000 8.35 0.00 0.00 3.46
1339 1370 4.607293 TGTACAATGCTTGTCTCTGTCT 57.393 40.909 0.00 0.00 44.12 3.41
1362 1393 4.777896 AGAGATGCCAGGTAAAGAGTACAA 59.222 41.667 0.00 0.00 0.00 2.41
1453 1502 0.660488 CGCCACACAAACAGCTTACA 59.340 50.000 0.00 0.00 0.00 2.41
1480 1529 2.548920 GCACTGACAGTTAGACCAAGCT 60.549 50.000 5.04 0.00 0.00 3.74
1496 1545 5.104374 AGTGTGAAATCTTGTTTTGCACTG 58.896 37.500 0.00 0.00 33.71 3.66
1505 1554 6.692681 CGTGAAAATGAAGTGTGAAATCTTGT 59.307 34.615 0.00 0.00 0.00 3.16
1523 1572 9.740239 GTCACATAGTTATATACTCCGTGAAAA 57.260 33.333 14.18 0.00 43.82 2.29
1526 1575 7.229308 AGGTCACATAGTTATATACTCCGTGA 58.771 38.462 0.00 0.00 41.87 4.35
1547 1596 3.004839 GCCAAGAAAGTTCCTTGAAGGTC 59.995 47.826 11.60 6.13 42.57 3.85
1941 1991 4.083324 TGCACAGCTACAGCAAGTTAATTC 60.083 41.667 3.70 0.00 45.16 2.17
2141 2194 2.168496 GTAGCACAGACCAGGTACAGA 58.832 52.381 0.00 0.00 38.30 3.41
2272 2337 4.829064 AAAAGAGTTAGCGTTCATGCAA 57.171 36.364 0.00 0.00 37.31 4.08
2321 2387 4.517453 TCAACATACAAGTTAAGTGGGCAC 59.483 41.667 0.00 0.00 0.00 5.01
2340 2406 6.514048 GCATAGGAGGCATCTGTAAAATCAAC 60.514 42.308 0.00 0.00 0.00 3.18
2481 2547 0.871722 GAACATGCGGTGTAGTTGCA 59.128 50.000 0.00 0.00 41.14 4.08
2522 2588 7.184570 CCCATCTCCCCTTTAGGATCAAATATA 59.815 40.741 0.00 0.00 38.24 0.86
2523 2589 6.011274 CCCATCTCCCCTTTAGGATCAAATAT 60.011 42.308 0.00 0.00 38.24 1.28
2665 2731 6.827727 AGATACAAGGGCGATTAACTATTGT 58.172 36.000 0.00 0.00 34.15 2.71
2861 2931 8.995027 AAATAGAAATAACCCTGTGATATGCA 57.005 30.769 0.00 0.00 0.00 3.96
2933 3003 4.045636 ACACCAACAATCTTTCTTGCAC 57.954 40.909 0.00 0.00 0.00 4.57
3103 3174 0.034477 ATTGGTTACAGGGAAGGGCG 60.034 55.000 0.00 0.00 0.00 6.13
3142 3213 3.515602 AACTCCTTCAGTTCCTGCATT 57.484 42.857 0.00 0.00 42.07 3.56
3361 3432 6.151144 AGTGGTAATGAAAATCCAACAGCTAC 59.849 38.462 0.00 0.00 0.00 3.58
3375 3446 7.239763 TCTGTATTGTCAGAGTGGTAATGAA 57.760 36.000 0.00 0.00 39.20 2.57
3376 3447 6.850752 TCTGTATTGTCAGAGTGGTAATGA 57.149 37.500 0.00 0.00 39.20 2.57
3468 3548 8.790718 AGAATTCCTATCAAAATCATGATTCCG 58.209 33.333 20.95 14.59 40.44 4.30
3630 3713 5.010314 TGCTAGTACCGGAGTTAATACATGG 59.990 44.000 9.46 0.00 0.00 3.66
3631 3714 5.919141 GTGCTAGTACCGGAGTTAATACATG 59.081 44.000 9.46 0.00 0.00 3.21
3632 3715 5.010415 GGTGCTAGTACCGGAGTTAATACAT 59.990 44.000 14.67 0.00 0.00 2.29
3633 3716 4.339247 GGTGCTAGTACCGGAGTTAATACA 59.661 45.833 14.67 0.00 0.00 2.29
3634 3717 4.339247 TGGTGCTAGTACCGGAGTTAATAC 59.661 45.833 23.01 0.00 43.87 1.89
3635 3718 4.339247 GTGGTGCTAGTACCGGAGTTAATA 59.661 45.833 23.01 1.41 43.87 0.98
3636 3719 3.131755 GTGGTGCTAGTACCGGAGTTAAT 59.868 47.826 23.01 0.00 43.87 1.40
3637 3720 2.493278 GTGGTGCTAGTACCGGAGTTAA 59.507 50.000 23.01 2.85 43.87 2.01
4080 4166 2.603173 GCAGCAGTTGAAGTACAGCAAC 60.603 50.000 17.92 17.92 43.48 4.17
4083 4169 1.229428 TGCAGCAGTTGAAGTACAGC 58.771 50.000 0.00 0.00 0.00 4.40
4167 4253 1.552337 TGCTCATCCTGGAGTTGAGTC 59.448 52.381 22.12 16.47 39.24 3.36
4209 4295 2.158957 TGCGGAACCTCATGATACCTTC 60.159 50.000 0.00 0.00 0.00 3.46
4527 4619 5.765677 TGATACAACTTCGAACCCATGAAAA 59.234 36.000 0.00 0.00 0.00 2.29
4528 4620 5.309638 TGATACAACTTCGAACCCATGAAA 58.690 37.500 0.00 0.00 0.00 2.69
4575 4667 7.628234 AGGATGGATCATACATGGAATAGAAC 58.372 38.462 0.00 0.00 0.00 3.01
4590 4682 0.552848 GCCCCTCAAAGGATGGATCA 59.447 55.000 0.00 0.00 37.67 2.92
4591 4683 0.849417 AGCCCCTCAAAGGATGGATC 59.151 55.000 0.00 0.00 37.67 3.36
4740 4832 1.070957 GGCCCCTTGATACCTACGC 59.929 63.158 0.00 0.00 0.00 4.42
4809 4901 3.381272 CCACAAACTTGGACTCACATTGT 59.619 43.478 0.00 0.00 39.24 2.71
5055 5147 1.595093 GCTGGCTTTACACGGGCATT 61.595 55.000 0.00 0.00 37.38 3.56
5087 5179 0.921347 CCGAAGCTTCCAACGTATCG 59.079 55.000 20.62 6.28 0.00 2.92
5099 5191 2.359230 GCTGAAGCACCCGAAGCT 60.359 61.111 0.00 0.00 45.97 3.74
5135 5227 3.116300 CTCATCGGTGGAACTATGTTCG 58.884 50.000 0.00 0.00 36.74 3.95
5156 5248 1.001293 TGCTCGGTCATATCAGCATCC 59.999 52.381 0.00 0.00 36.96 3.51
5162 5254 0.390492 CCTGCTGCTCGGTCATATCA 59.610 55.000 0.00 0.00 0.00 2.15
5316 5408 3.321682 CCAATTTGGCTTTCTGTCTCCAA 59.678 43.478 1.71 0.00 36.86 3.53
5336 5428 0.320858 CATTGCAGCCAACATTGCCA 60.321 50.000 0.00 0.00 39.54 4.92
5467 5559 4.901197 TGTTCCTCATTAACTAGTGGCA 57.099 40.909 0.00 0.00 0.00 4.92
5493 5585 1.410224 GCCATCTTTGAGGGTTAGGGG 60.410 57.143 0.29 0.00 35.75 4.79
6038 6130 6.795144 TGATAAAAGTTCATACCCCGACTA 57.205 37.500 0.00 0.00 0.00 2.59
6166 6271 9.860650 ACTGGAGTAATAACAATTGCCATAATA 57.139 29.630 5.05 0.00 0.00 0.98
6587 6694 6.748132 TGAATACAGCATCGATTGAGACATA 58.252 36.000 4.12 0.00 0.00 2.29
6589 6696 5.009854 TGAATACAGCATCGATTGAGACA 57.990 39.130 4.12 0.00 0.00 3.41
6596 6719 6.283544 AGATCTCATGAATACAGCATCGAT 57.716 37.500 0.00 0.00 0.00 3.59
6731 6915 0.107508 AGGGTGGATGCGTGAATCAG 60.108 55.000 0.00 0.00 0.00 2.90
6740 6924 2.808906 ACTCCTTTTAGGGTGGATGC 57.191 50.000 0.00 0.00 35.59 3.91
6750 6934 6.276092 TCTTTGGAAATCCCCTACTCCTTTTA 59.724 38.462 0.00 0.00 34.29 1.52
6811 6995 7.325338 GTGCATGAATCAAAATCATATCTTCCG 59.675 37.037 0.00 0.00 35.80 4.30
6816 7000 6.671190 TCCGTGCATGAATCAAAATCATATC 58.329 36.000 7.72 0.00 35.80 1.63
6854 7200 3.812882 GCCTAGGCCTTTGGTACTTTTCA 60.813 47.826 24.19 0.00 34.56 2.69
6855 7201 2.753452 GCCTAGGCCTTTGGTACTTTTC 59.247 50.000 24.19 0.00 34.56 2.29
6864 7210 1.303309 CAATCTCGCCTAGGCCTTTG 58.697 55.000 28.09 20.01 37.98 2.77
6866 7212 0.691078 TCCAATCTCGCCTAGGCCTT 60.691 55.000 28.09 13.23 37.98 4.35
6883 7229 7.444629 AGGTCCGTTTTCTTTAACTAAATCC 57.555 36.000 0.00 0.00 0.00 3.01
6899 7246 0.320697 GTGGCTAGACAAGGTCCGTT 59.679 55.000 0.00 0.00 32.18 4.44
6943 7290 6.898189 GTCGTACAAAATAAGAATGCGGTAAG 59.102 38.462 0.00 0.00 0.00 2.34
6944 7291 6.183360 GGTCGTACAAAATAAGAATGCGGTAA 60.183 38.462 0.00 0.00 0.00 2.85
6945 7292 5.291614 GGTCGTACAAAATAAGAATGCGGTA 59.708 40.000 0.00 0.00 0.00 4.02
6946 7293 4.093850 GGTCGTACAAAATAAGAATGCGGT 59.906 41.667 0.00 0.00 0.00 5.68
6947 7294 4.584394 GGTCGTACAAAATAAGAATGCGG 58.416 43.478 0.00 0.00 0.00 5.69
6948 7295 4.201647 ACGGTCGTACAAAATAAGAATGCG 60.202 41.667 0.00 0.00 0.00 4.73
6949 7296 5.212589 ACGGTCGTACAAAATAAGAATGC 57.787 39.130 0.00 0.00 0.00 3.56
6950 7297 6.595794 ACAACGGTCGTACAAAATAAGAATG 58.404 36.000 0.00 0.00 0.00 2.67
6951 7298 6.790285 ACAACGGTCGTACAAAATAAGAAT 57.210 33.333 0.00 0.00 0.00 2.40
6952 7299 6.601741 AACAACGGTCGTACAAAATAAGAA 57.398 33.333 0.00 0.00 0.00 2.52
6953 7300 6.479660 AGAAACAACGGTCGTACAAAATAAGA 59.520 34.615 0.00 0.00 0.00 2.10
6954 7301 6.652245 AGAAACAACGGTCGTACAAAATAAG 58.348 36.000 0.00 0.00 0.00 1.73
6955 7302 6.601741 AGAAACAACGGTCGTACAAAATAA 57.398 33.333 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.