Multiple sequence alignment - TraesCS4B01G319100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G319100 chr4B 100.000 2633 0 0 1838 4470 609497204 609499836 0.000000e+00 4863
1 TraesCS4B01G319100 chr4B 100.000 1526 0 0 1 1526 609495367 609496892 0.000000e+00 2819
2 TraesCS4B01G319100 chr5A 94.697 2659 71 10 1838 4470 662341591 662338977 0.000000e+00 4065
3 TraesCS4B01G319100 chr5A 94.349 991 36 13 551 1526 662342624 662341639 0.000000e+00 1502
4 TraesCS4B01G319100 chr5A 91.071 560 28 6 8 565 662343176 662342637 0.000000e+00 737
5 TraesCS4B01G319100 chr4D 94.689 2655 79 6 1838 4470 481168705 481171319 0.000000e+00 4065
6 TraesCS4B01G319100 chr4D 94.274 943 23 6 585 1526 481167745 481168657 0.000000e+00 1413
7 TraesCS4B01G319100 chr4D 96.311 515 18 1 1 514 481166836 481167350 0.000000e+00 845
8 TraesCS4B01G319100 chr3D 82.651 1856 225 42 1838 3650 612903445 612901644 0.000000e+00 1554
9 TraesCS4B01G319100 chr3D 80.454 793 116 22 754 1526 612904233 612903460 1.800000e-158 569
10 TraesCS4B01G319100 chr3D 79.954 439 62 11 2242 2679 612086358 612086771 2.610000e-77 300
11 TraesCS4B01G319100 chr3D 82.418 182 30 2 2979 3159 612087062 612087242 1.660000e-34 158
12 TraesCS4B01G319100 chr3B 82.391 1840 218 45 1838 3633 826082875 826084652 0.000000e+00 1506
13 TraesCS4B01G319100 chr3B 80.377 795 115 23 754 1526 826082085 826082860 2.330000e-157 566
14 TraesCS4B01G319100 chr3B 84.634 423 63 2 2714 3135 830369343 830369764 1.920000e-113 420
15 TraesCS4B01G319100 chr3A 82.438 1805 220 41 1889 3650 747627845 747626095 0.000000e+00 1487
16 TraesCS4B01G319100 chr3A 80.784 791 117 19 754 1526 747628672 747627899 1.790000e-163 586
17 TraesCS4B01G319100 chr3A 78.207 569 93 24 2372 2930 747869167 747868620 7.160000e-88 335
18 TraesCS4B01G319100 chr3A 80.000 310 50 7 2372 2679 747835367 747835068 7.530000e-53 219
19 TraesCS4B01G319100 chrUn 80.000 310 50 7 2372 2679 33651679 33651380 7.530000e-53 219
20 TraesCS4B01G319100 chrUn 80.000 310 50 7 2372 2679 184782164 184781865 7.530000e-53 219
21 TraesCS4B01G319100 chrUn 87.574 169 20 1 2763 2930 184781615 184781447 1.270000e-45 195
22 TraesCS4B01G319100 chrUn 88.344 163 18 1 2763 2924 398649995 398650157 1.270000e-45 195
23 TraesCS4B01G319100 chr6D 93.814 97 6 0 4073 4169 349927674 349927770 3.600000e-31 147
24 TraesCS4B01G319100 chr6A 93.814 97 6 0 4073 4169 494465093 494464997 3.600000e-31 147
25 TraesCS4B01G319100 chr2B 91.509 106 9 0 4064 4169 679898356 679898251 3.600000e-31 147
26 TraesCS4B01G319100 chr2A 91.509 106 9 0 4064 4169 706753011 706752906 3.600000e-31 147
27 TraesCS4B01G319100 chr2D 90.566 106 10 0 4064 4169 566989108 566989003 1.680000e-29 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G319100 chr4B 609495367 609499836 4469 False 3841.000000 4863 100.000000 1 4470 2 chr4B.!!$F1 4469
1 TraesCS4B01G319100 chr5A 662338977 662343176 4199 True 2101.333333 4065 93.372333 8 4470 3 chr5A.!!$R1 4462
2 TraesCS4B01G319100 chr4D 481166836 481171319 4483 False 2107.666667 4065 95.091333 1 4470 3 chr4D.!!$F1 4469
3 TraesCS4B01G319100 chr3D 612901644 612904233 2589 True 1061.500000 1554 81.552500 754 3650 2 chr3D.!!$R1 2896
4 TraesCS4B01G319100 chr3D 612086358 612087242 884 False 229.000000 300 81.186000 2242 3159 2 chr3D.!!$F1 917
5 TraesCS4B01G319100 chr3B 826082085 826084652 2567 False 1036.000000 1506 81.384000 754 3633 2 chr3B.!!$F2 2879
6 TraesCS4B01G319100 chr3A 747626095 747628672 2577 True 1036.500000 1487 81.611000 754 3650 2 chr3A.!!$R3 2896
7 TraesCS4B01G319100 chr3A 747868620 747869167 547 True 335.000000 335 78.207000 2372 2930 1 chr3A.!!$R2 558
8 TraesCS4B01G319100 chrUn 184781447 184782164 717 True 207.000000 219 83.787000 2372 2930 2 chrUn.!!$R2 558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
662 1007 0.180171 TCCAGTTATGCACCCGGATG 59.820 55.0 0.73 0.0 0.00 3.51 F
1026 1381 0.255890 GCAACAAGGATGAGGCCCTA 59.744 55.0 0.00 0.0 32.77 3.53 F
2539 2906 0.747255 GCCTTCTACTCGGATCAGCA 59.253 55.0 0.00 0.0 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2397 2764 2.050144 GCCCATGGACCTGAGAGAATA 58.950 52.381 15.22 0.00 0.0 1.75 R
2991 3627 3.885724 TCACTATTTGTCCTCGATGCA 57.114 42.857 0.00 0.00 0.0 3.96 R
3663 4331 0.402566 AGGAATGGCTAGCCCCAGAT 60.403 55.000 30.81 14.83 38.5 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
136 137 2.752238 CGCCTCTCCGTCCTCTGT 60.752 66.667 0.00 0.00 0.00 3.41
340 342 0.528470 CCTTCCTCTCTCGGTGTGAC 59.472 60.000 0.00 0.00 0.00 3.67
472 474 6.707290 TGAACTAAATTAGAACTGCCTGCTA 58.293 36.000 7.06 0.00 0.00 3.49
494 496 9.073475 TGCTAAAATACCAGTGTAAACTGAATT 57.927 29.630 15.05 10.52 39.99 2.17
501 503 3.908382 CAGTGTAAACTGAATTCAAGCGC 59.092 43.478 7.32 0.00 39.99 5.92
510 512 4.216257 ACTGAATTCAAGCGCATAAGTTGT 59.784 37.500 11.47 0.00 0.00 3.32
526 528 2.549754 AGTTGTCTGTTTTCATCCAGCG 59.450 45.455 0.00 0.00 0.00 5.18
541 543 5.362717 TCATCCAGCGATTCTCCTAGTTAAA 59.637 40.000 0.00 0.00 0.00 1.52
625 951 2.301583 GGGCACTAGGGCAATTTTTGAA 59.698 45.455 20.77 0.00 45.66 2.69
657 1002 7.717875 TGTAGTTATAATTCCAGTTATGCACCC 59.282 37.037 0.00 0.00 0.00 4.61
658 1003 5.763204 AGTTATAATTCCAGTTATGCACCCG 59.237 40.000 0.00 0.00 0.00 5.28
659 1004 1.762708 AATTCCAGTTATGCACCCGG 58.237 50.000 0.00 0.00 0.00 5.73
660 1005 0.916086 ATTCCAGTTATGCACCCGGA 59.084 50.000 0.73 0.00 0.00 5.14
661 1006 0.916086 TTCCAGTTATGCACCCGGAT 59.084 50.000 0.73 0.00 29.46 4.18
662 1007 0.180171 TCCAGTTATGCACCCGGATG 59.820 55.000 0.73 0.00 0.00 3.51
663 1008 0.819259 CCAGTTATGCACCCGGATGG 60.819 60.000 0.73 0.00 41.37 3.51
673 1018 2.275880 CCCGGATGGTTGCAATTGT 58.724 52.632 0.73 0.00 0.00 2.71
674 1019 1.468985 CCCGGATGGTTGCAATTGTA 58.531 50.000 0.73 0.00 0.00 2.41
675 1020 1.134175 CCCGGATGGTTGCAATTGTAC 59.866 52.381 0.73 5.86 0.00 2.90
676 1021 1.134175 CCGGATGGTTGCAATTGTACC 59.866 52.381 19.17 19.17 0.00 3.34
778 1126 7.559590 AGTTATAATTCTTGTCATGCTGGAC 57.440 36.000 1.93 1.93 38.29 4.02
789 1137 2.432146 TCATGCTGGACAGGACTGTATC 59.568 50.000 4.73 2.05 45.05 2.24
794 1143 3.447586 GCTGGACAGGACTGTATCTGTTA 59.552 47.826 14.63 8.56 45.05 2.41
795 1144 4.081642 GCTGGACAGGACTGTATCTGTTAA 60.082 45.833 14.63 7.82 45.05 2.01
903 1258 1.006314 GTCACACTCTCAGCGCTGAC 61.006 60.000 35.30 20.04 35.46 3.51
1026 1381 0.255890 GCAACAAGGATGAGGCCCTA 59.744 55.000 0.00 0.00 32.77 3.53
1164 1519 5.416271 TCACTACCTTGGATGTTTACCTC 57.584 43.478 0.00 0.00 0.00 3.85
1412 1767 7.360861 AATGAAATTGATTGCAATGCAACAGAG 60.361 33.333 23.81 0.00 43.26 3.35
2001 2368 2.045926 CTTTGCCCTAGCTGCCGT 60.046 61.111 0.00 0.00 40.80 5.68
2177 2544 3.170360 CATCATCTGCTGCTGGTGT 57.830 52.632 17.60 4.76 0.00 4.16
2199 2566 5.355071 TGTTCAAGCTGCTAATATGGTTCAG 59.645 40.000 0.90 0.00 0.00 3.02
2397 2764 1.349357 GCTGGAGTTGGTTCTTCCTCT 59.651 52.381 0.00 0.00 37.07 3.69
2433 2800 2.894731 TGGGCCAATTATGTTGGAACA 58.105 42.857 2.13 9.23 42.06 3.18
2435 2802 2.564947 GGGCCAATTATGTTGGAACACA 59.435 45.455 4.39 0.00 42.51 3.72
2539 2906 0.747255 GCCTTCTACTCGGATCAGCA 59.253 55.000 0.00 0.00 0.00 4.41
2606 2973 5.181009 TGACAAGATGAAGAGCGATTTGAT 58.819 37.500 0.00 0.00 0.00 2.57
2766 3218 2.235650 CTGTGCTGATCCAGAGGAGAAA 59.764 50.000 0.00 0.00 34.05 2.52
2925 3561 4.025040 TGATGATGAAGATGGTATGCCC 57.975 45.455 0.00 0.00 0.00 5.36
3663 4331 8.372459 ACTATCACCTTTGTATACAGTTGTTGA 58.628 33.333 5.56 7.10 0.00 3.18
3820 4488 9.672673 AAGTGCTGATACTTCTACAATATGTTT 57.327 29.630 0.00 0.00 36.16 2.83
3849 4517 9.230122 CTATCTCTAGCTGTATGAGAATGAAGA 57.770 37.037 12.25 0.00 39.80 2.87
3886 4554 2.884012 TGGTTGCTCAACATACCACTTG 59.116 45.455 13.89 0.00 42.85 3.16
3906 4574 6.545666 CACTTGCTTGGTTACCATTATGGATA 59.454 38.462 19.23 3.97 40.96 2.59
3962 4630 6.963049 CAGGTTGTTACTGGTGAACTATAC 57.037 41.667 0.00 0.00 32.38 1.47
3963 4631 6.460781 CAGGTTGTTACTGGTGAACTATACA 58.539 40.000 0.00 0.00 32.38 2.29
3964 4632 6.590292 CAGGTTGTTACTGGTGAACTATACAG 59.410 42.308 0.00 0.00 37.01 2.74
3965 4633 6.269307 AGGTTGTTACTGGTGAACTATACAGT 59.731 38.462 0.00 0.00 45.32 3.55
4019 4687 9.113876 GAACAGTGTATTACAGTATTGTTTTGC 57.886 33.333 3.87 0.00 38.76 3.68
4041 4709 4.723248 CCCTTATTGTCAGCGAAGTTTTC 58.277 43.478 0.00 0.00 0.00 2.29
4054 4722 2.992847 AGTTTTCCCCTTTTCCGGAT 57.007 45.000 4.15 0.00 0.00 4.18
4092 4760 7.014449 TCTTTTACTCCCTCCGATCCATATTA 58.986 38.462 0.00 0.00 0.00 0.98
4116 4784 3.724374 TGTCGCAGCTTTAGTACAACTT 58.276 40.909 0.00 0.00 0.00 2.66
4117 4785 4.124238 TGTCGCAGCTTTAGTACAACTTT 58.876 39.130 0.00 0.00 0.00 2.66
4118 4786 4.025229 TGTCGCAGCTTTAGTACAACTTTG 60.025 41.667 0.00 0.00 0.00 2.77
4119 4787 4.025145 GTCGCAGCTTTAGTACAACTTTGT 60.025 41.667 0.00 0.00 44.86 2.83
4120 4788 5.176223 GTCGCAGCTTTAGTACAACTTTGTA 59.824 40.000 0.00 0.00 42.35 2.41
4224 4892 7.687941 TTGGACATATGAAGAAGAAAGTTCC 57.312 36.000 10.38 1.74 0.00 3.62
4236 4904 7.622893 AGAAGAAAGTTCCTTGCAGAATATC 57.377 36.000 0.00 0.00 0.00 1.63
4237 4905 7.170965 AGAAGAAAGTTCCTTGCAGAATATCA 58.829 34.615 0.00 0.00 0.00 2.15
4238 4906 6.998968 AGAAAGTTCCTTGCAGAATATCAG 57.001 37.500 0.00 0.00 0.00 2.90
4239 4907 5.884792 AGAAAGTTCCTTGCAGAATATCAGG 59.115 40.000 0.00 0.00 0.00 3.86
4240 4908 4.851639 AGTTCCTTGCAGAATATCAGGT 57.148 40.909 0.00 0.00 0.00 4.00
4241 4909 5.184892 AGTTCCTTGCAGAATATCAGGTT 57.815 39.130 0.00 0.00 0.00 3.50
4242 4910 6.313519 AGTTCCTTGCAGAATATCAGGTTA 57.686 37.500 0.00 0.00 0.00 2.85
4243 4911 6.904626 AGTTCCTTGCAGAATATCAGGTTAT 58.095 36.000 0.00 0.00 0.00 1.89
4277 4945 0.460284 CAGGTATGCGGACTGTCCAC 60.460 60.000 25.42 17.15 35.91 4.02
4284 4952 0.389426 GCGGACTGTCCACGTAATGT 60.389 55.000 25.42 0.00 35.91 2.71
4323 4993 4.782019 TCTGGGCAAAAACATGTACATC 57.218 40.909 5.07 0.00 0.00 3.06
4448 5118 0.108424 AGAGTCTGGCAGCAATCGAC 60.108 55.000 10.34 1.50 0.00 4.20
4462 5132 0.670546 ATCGACGGCAGAACCAGTTG 60.671 55.000 0.00 0.00 39.03 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
236 238 1.640917 AGCACGGAAAGGGTAGAAGA 58.359 50.000 0.00 0.00 0.00 2.87
340 342 0.176680 AGCACCGAATCTGCACCTAG 59.823 55.000 0.00 0.00 37.08 3.02
362 364 2.159517 CGGGAAATCAAACTAGCACTGC 60.160 50.000 0.00 0.00 0.00 4.40
416 418 3.815809 TCAAGTCCGACAATTTTCCAGT 58.184 40.909 0.40 0.00 0.00 4.00
494 496 2.766313 ACAGACAACTTATGCGCTTGA 58.234 42.857 9.73 0.00 0.00 3.02
501 503 6.088824 GCTGGATGAAAACAGACAACTTATG 58.911 40.000 0.00 0.00 36.86 1.90
510 512 3.935203 GAGAATCGCTGGATGAAAACAGA 59.065 43.478 0.00 0.00 36.86 3.41
526 528 6.248569 TGGTGGGATTTAACTAGGAGAATC 57.751 41.667 0.00 0.52 0.00 2.52
587 913 1.298340 CCAATGGGTGACAGCGGTA 59.702 57.895 0.00 0.00 0.00 4.02
657 1002 1.815613 TGGTACAATTGCAACCATCCG 59.184 47.619 22.92 0.00 38.36 4.18
675 1020 9.956720 GGATCAACTGAAGATACATAATTTTGG 57.043 33.333 0.00 0.00 0.00 3.28
765 1113 1.059098 AGTCCTGTCCAGCATGACAA 58.941 50.000 9.27 0.00 44.19 3.18
903 1258 1.455383 GCCACAACACCTTCCACCAG 61.455 60.000 0.00 0.00 0.00 4.00
1026 1381 0.890683 CTGCAATTTCCTTCGCCCTT 59.109 50.000 0.00 0.00 0.00 3.95
1164 1519 1.734465 GCAATCTTCACCTCCGAAGTG 59.266 52.381 0.00 0.00 42.53 3.16
1412 1767 8.180267 CACTTGTCTTATTTGATTGAGATGTCC 58.820 37.037 0.00 0.00 0.00 4.02
2001 2368 3.949754 CCTCTTTTGCTATGAATGGCTCA 59.050 43.478 0.21 0.00 38.81 4.26
2177 2544 4.336433 GCTGAACCATATTAGCAGCTTGAA 59.664 41.667 0.00 0.00 46.17 2.69
2199 2566 4.486090 TCTTGACTTTCTCATACGTCTGC 58.514 43.478 0.00 0.00 0.00 4.26
2300 2667 5.180492 TGGTTAACATTCTCGGACACATTTC 59.820 40.000 8.10 0.00 0.00 2.17
2397 2764 2.050144 GCCCATGGACCTGAGAGAATA 58.950 52.381 15.22 0.00 0.00 1.75
2433 2800 6.548321 TGAAAATGGTATAGTTCCACCTTGT 58.452 36.000 0.00 0.00 37.81 3.16
2435 2802 6.436218 GGTTGAAAATGGTATAGTTCCACCTT 59.564 38.462 0.00 0.00 37.81 3.50
2539 2906 9.945633 ATCCTTCTTAGAGAAAGTCCTAGTTAT 57.054 33.333 0.00 0.00 33.19 1.89
2606 2973 8.846423 ACTTCTTATCTCCTTTAGATTCTCCA 57.154 34.615 0.00 0.00 42.62 3.86
2991 3627 3.885724 TCACTATTTGTCCTCGATGCA 57.114 42.857 0.00 0.00 0.00 3.96
3027 3663 1.746991 GAAGCCGGAAGAAGCCCAG 60.747 63.158 5.05 0.00 0.00 4.45
3663 4331 0.402566 AGGAATGGCTAGCCCCAGAT 60.403 55.000 30.81 14.83 38.50 2.90
3820 4488 9.579932 TCATTCTCATACAGCTAGAGATAGAAA 57.420 33.333 0.00 0.00 38.14 2.52
3823 4491 9.230122 TCTTCATTCTCATACAGCTAGAGATAG 57.770 37.037 0.00 5.09 38.14 2.08
3849 4517 7.839907 TGAGCAACCAGATAAAATAGCAAAAT 58.160 30.769 0.00 0.00 0.00 1.82
3886 4554 7.425606 CAAACTATCCATAATGGTAACCAAGC 58.574 38.462 0.00 0.00 39.03 4.01
3952 4620 6.164176 ACTGCTGGTAAACTGTATAGTTCAC 58.836 40.000 5.24 1.00 46.14 3.18
3953 4621 6.354794 ACTGCTGGTAAACTGTATAGTTCA 57.645 37.500 5.24 0.00 46.14 3.18
3954 4622 7.488471 CAGTACTGCTGGTAAACTGTATAGTTC 59.512 40.741 10.54 0.00 42.45 3.01
3955 4623 7.177921 TCAGTACTGCTGGTAAACTGTATAGTT 59.822 37.037 18.45 0.00 45.59 2.24
3956 4624 6.662234 TCAGTACTGCTGGTAAACTGTATAGT 59.338 38.462 18.45 0.00 45.08 2.12
3957 4625 7.096884 TCAGTACTGCTGGTAAACTGTATAG 57.903 40.000 18.45 0.00 45.08 1.31
3958 4626 7.655521 ATCAGTACTGCTGGTAAACTGTATA 57.344 36.000 18.45 0.00 45.08 1.47
3959 4627 5.995565 TCAGTACTGCTGGTAAACTGTAT 57.004 39.130 18.45 0.00 45.08 2.29
3960 4628 5.995565 ATCAGTACTGCTGGTAAACTGTA 57.004 39.130 18.45 0.00 45.08 2.74
3961 4629 4.891992 ATCAGTACTGCTGGTAAACTGT 57.108 40.909 18.45 0.00 45.08 3.55
3962 4630 7.334421 ACAAATATCAGTACTGCTGGTAAACTG 59.666 37.037 18.45 8.35 43.36 3.16
3963 4631 7.334421 CACAAATATCAGTACTGCTGGTAAACT 59.666 37.037 18.45 0.00 43.36 2.66
3964 4632 7.333423 TCACAAATATCAGTACTGCTGGTAAAC 59.667 37.037 18.45 0.00 43.36 2.01
3965 4633 7.333423 GTCACAAATATCAGTACTGCTGGTAAA 59.667 37.037 18.45 0.00 43.36 2.01
3966 4634 6.816640 GTCACAAATATCAGTACTGCTGGTAA 59.183 38.462 18.45 0.00 43.36 2.85
3990 4658 9.555727 AAACAATACTGTAATACACTGTTCAGT 57.444 29.630 0.00 0.00 39.71 3.41
4019 4687 4.379499 GGAAAACTTCGCTGACAATAAGGG 60.379 45.833 0.00 0.00 0.00 3.95
4092 4760 3.380479 TGTACTAAAGCTGCGACAACT 57.620 42.857 0.00 0.00 0.00 3.16
4116 4784 7.169645 CACGGCTTTAGTACAACTTTAGTACAA 59.830 37.037 6.30 0.00 43.24 2.41
4117 4785 6.642131 CACGGCTTTAGTACAACTTTAGTACA 59.358 38.462 6.30 0.00 43.24 2.90
4118 4786 6.863126 TCACGGCTTTAGTACAACTTTAGTAC 59.137 38.462 0.00 0.00 41.59 2.73
4119 4787 6.980593 TCACGGCTTTAGTACAACTTTAGTA 58.019 36.000 0.00 0.00 0.00 1.82
4120 4788 5.846203 TCACGGCTTTAGTACAACTTTAGT 58.154 37.500 0.00 0.00 0.00 2.24
4121 4789 6.963049 ATCACGGCTTTAGTACAACTTTAG 57.037 37.500 0.00 0.00 0.00 1.85
4122 4790 9.439500 AATTATCACGGCTTTAGTACAACTTTA 57.561 29.630 0.00 0.00 0.00 1.85
4123 4791 7.916914 ATTATCACGGCTTTAGTACAACTTT 57.083 32.000 0.00 0.00 0.00 2.66
4124 4792 7.916914 AATTATCACGGCTTTAGTACAACTT 57.083 32.000 0.00 0.00 0.00 2.66
4125 4793 9.609346 ATTAATTATCACGGCTTTAGTACAACT 57.391 29.630 0.00 0.00 0.00 3.16
4224 4892 5.996513 AGCTGATAACCTGATATTCTGCAAG 59.003 40.000 0.00 0.00 0.00 4.01
4236 4904 5.830912 TGAAAACAAACAGCTGATAACCTG 58.169 37.500 23.35 6.26 35.26 4.00
4237 4905 5.010012 CCTGAAAACAAACAGCTGATAACCT 59.990 40.000 23.35 0.00 33.40 3.50
4238 4906 5.221244 ACCTGAAAACAAACAGCTGATAACC 60.221 40.000 23.35 2.16 33.40 2.85
4239 4907 5.831997 ACCTGAAAACAAACAGCTGATAAC 58.168 37.500 23.35 3.89 33.40 1.89
4240 4908 7.592938 CATACCTGAAAACAAACAGCTGATAA 58.407 34.615 23.35 0.00 33.40 1.75
4241 4909 6.349280 GCATACCTGAAAACAAACAGCTGATA 60.349 38.462 23.35 0.00 33.40 2.15
4242 4910 5.565439 GCATACCTGAAAACAAACAGCTGAT 60.565 40.000 23.35 5.41 33.40 2.90
4243 4911 4.261572 GCATACCTGAAAACAAACAGCTGA 60.262 41.667 23.35 0.00 33.40 4.26
4323 4993 8.877808 TCTGTACATAATAAGCTGTGAATCTG 57.122 34.615 0.00 0.00 0.00 2.90
4448 5118 1.283793 CAAGCAACTGGTTCTGCCG 59.716 57.895 0.00 0.00 39.47 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.