Multiple sequence alignment - TraesCS4B01G318200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G318200 chr4B 100.000 6530 0 0 1 6530 608668222 608674751 0.000000e+00 12059.0
1 TraesCS4B01G318200 chr4B 90.805 174 2 3 502 664 608668480 608668650 3.070000e-53 220.0
2 TraesCS4B01G318200 chr4B 90.805 174 2 3 259 429 608668723 608668885 3.070000e-53 220.0
3 TraesCS4B01G318200 chr4B 92.308 104 7 1 684 787 416440471 416440573 5.280000e-31 147.0
4 TraesCS4B01G318200 chr4B 91.765 85 5 1 5541 5623 608673678 608673762 4.140000e-22 117.0
5 TraesCS4B01G318200 chr4B 91.765 85 5 1 5457 5541 608673762 608673844 4.140000e-22 117.0
6 TraesCS4B01G318200 chr4D 94.187 4903 182 35 1589 6429 480824934 480829795 0.000000e+00 7380.0
7 TraesCS4B01G318200 chr4D 87.159 880 55 36 606 1456 480824090 480824940 0.000000e+00 946.0
8 TraesCS4B01G318200 chr4D 89.567 393 15 9 1 378 480823680 480824061 5.920000e-130 475.0
9 TraesCS4B01G318200 chr4D 89.809 157 16 0 4081 4237 85011275 85011119 1.110000e-47 202.0
10 TraesCS4B01G318200 chr4D 89.262 149 9 6 362 506 480824079 480824224 5.200000e-41 180.0
11 TraesCS4B01G318200 chr4D 95.294 85 4 0 5457 5541 480828889 480828973 1.140000e-27 135.0
12 TraesCS4B01G318200 chr4D 90.476 84 7 1 5541 5623 480828806 480828889 6.920000e-20 110.0
13 TraesCS4B01G318200 chr4D 71.613 310 68 13 5862 6154 327972536 327972230 4.230000e-07 67.6
14 TraesCS4B01G318200 chr5A 94.450 3207 124 20 2995 6170 662729548 662726365 0.000000e+00 4887.0
15 TraesCS4B01G318200 chr5A 95.156 1156 51 5 1808 2959 662730699 662729545 0.000000e+00 1820.0
16 TraesCS4B01G318200 chr5A 85.911 1015 76 40 502 1456 662731885 662730878 0.000000e+00 1020.0
17 TraesCS4B01G318200 chr5A 82.718 515 44 26 9 506 662732115 662731629 3.640000e-112 416.0
18 TraesCS4B01G318200 chr5A 91.710 193 14 1 1589 1779 662730884 662730692 3.880000e-67 267.0
19 TraesCS4B01G318200 chr5A 75.080 313 62 9 5860 6158 19081260 19081570 1.480000e-26 132.0
20 TraesCS4B01G318200 chr5A 91.765 85 7 0 5457 5541 662726983 662726899 1.150000e-22 119.0
21 TraesCS4B01G318200 chr5A 90.476 84 7 1 5541 5623 662727066 662726983 6.920000e-20 110.0
22 TraesCS4B01G318200 chr6D 90.385 156 15 0 4084 4239 472535981 472535826 8.580000e-49 206.0
23 TraesCS4B01G318200 chr6D 100.000 30 0 0 1459 1488 413790904 413790875 1.000000e-03 56.5
24 TraesCS4B01G318200 chr2D 87.898 157 17 2 4081 4236 35507237 35507082 4.020000e-42 183.0
25 TraesCS4B01G318200 chr2D 84.314 153 21 3 4081 4231 97873231 97873080 5.280000e-31 147.0
26 TraesCS4B01G318200 chr2D 97.059 34 1 0 1462 1495 495779705 495779738 2.540000e-04 58.4
27 TraesCS4B01G318200 chr7A 84.615 169 21 4 4078 4243 86235171 86235005 5.240000e-36 163.0
28 TraesCS4B01G318200 chr7A 96.875 32 0 1 1462 1492 678582981 678582950 1.200000e-02 52.8
29 TraesCS4B01G318200 chr7A 96.774 31 1 0 1458 1488 727294625 727294595 1.200000e-02 52.8
30 TraesCS4B01G318200 chr1D 94.444 108 2 4 681 787 267593135 267593031 5.240000e-36 163.0
31 TraesCS4B01G318200 chr2A 85.443 158 20 3 4081 4236 38596857 38596701 1.880000e-35 161.0
32 TraesCS4B01G318200 chr2A 97.059 34 1 0 1462 1495 641392933 641392966 2.540000e-04 58.4
33 TraesCS4B01G318200 chr6A 95.000 100 5 0 687 786 80820456 80820357 2.440000e-34 158.0
34 TraesCS4B01G318200 chr2B 94.231 104 2 3 684 787 258656071 258656170 8.770000e-34 156.0
35 TraesCS4B01G318200 chr2B 100.000 30 0 0 1459 1488 485678742 485678771 1.000000e-03 56.5
36 TraesCS4B01G318200 chr1A 97.802 91 1 1 704 794 335544509 335544598 8.770000e-34 156.0
37 TraesCS4B01G318200 chr1A 96.875 32 0 1 1462 1492 109423077 109423046 1.200000e-02 52.8
38 TraesCS4B01G318200 chr5D 93.269 104 5 2 684 786 302378488 302378386 1.130000e-32 152.0
39 TraesCS4B01G318200 chr5D 84.177 158 20 3 4075 4230 176102085 176102239 1.470000e-31 148.0
40 TraesCS4B01G318200 chr5D 100.000 29 0 0 1460 1488 327282029 327282001 3.000000e-03 54.7
41 TraesCS4B01G318200 chr5D 100.000 28 0 0 1462 1489 51999301 51999274 1.200000e-02 52.8
42 TraesCS4B01G318200 chr4A 94.898 98 4 1 691 787 135355029 135354932 1.130000e-32 152.0
43 TraesCS4B01G318200 chr4A 87.671 73 8 1 6446 6518 8965954 8966025 4.200000e-12 84.2
44 TraesCS4B01G318200 chr7B 91.892 74 6 0 6446 6519 61851739 61851812 3.220000e-18 104.0
45 TraesCS4B01G318200 chr7B 73.958 288 41 25 5893 6154 645507247 645507526 1.170000e-12 86.1
46 TraesCS4B01G318200 chr3A 92.857 70 5 0 6450 6519 301142639 301142708 1.160000e-17 102.0
47 TraesCS4B01G318200 chr5B 89.744 78 6 2 6446 6522 459491685 459491609 1.500000e-16 99.0
48 TraesCS4B01G318200 chr5B 100.000 37 0 0 1 37 147432834 147432870 1.170000e-07 69.4
49 TraesCS4B01G318200 chr3D 89.189 74 8 0 6446 6519 154542709 154542782 6.970000e-15 93.5
50 TraesCS4B01G318200 chrUn 88.000 75 7 2 6446 6519 37006021 37006094 3.240000e-13 87.9
51 TraesCS4B01G318200 chrUn 87.179 78 8 2 6446 6522 37367232 37367156 3.240000e-13 87.9
52 TraesCS4B01G318200 chrUn 87.179 78 8 2 6446 6522 242183292 242183216 3.240000e-13 87.9
53 TraesCS4B01G318200 chr3B 85.714 77 11 0 6446 6522 498733037 498732961 1.510000e-11 82.4
54 TraesCS4B01G318200 chr6B 73.091 275 54 16 5896 6154 139303369 139303099 5.430000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G318200 chr4B 608668222 608674751 6529 False 12059.000000 12059 100.000000 1 6530 1 chr4B.!!$F2 6529
1 TraesCS4B01G318200 chr4D 480823680 480829795 6115 False 1537.666667 7380 90.990833 1 6429 6 chr4D.!!$F1 6428
2 TraesCS4B01G318200 chr5A 662726365 662732115 5750 True 1234.142857 4887 90.312286 9 6170 7 chr5A.!!$R1 6161

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
503 565 0.106015 AAAAGGGAAGTGTGGCTGCT 60.106 50.000 0.00 0.0 0.00 4.24 F
612 674 0.107703 GCATGATCGTCCCAGGTTGA 60.108 55.000 0.00 0.0 0.00 3.18 F
838 902 0.370273 CGTGTGCTCCAATACGCTTC 59.630 55.000 0.00 0.0 0.00 3.86 F
2515 2597 0.178961 GGCCTCAAGGAAGGTTGGTT 60.179 55.000 0.00 0.0 38.79 3.67 F
2864 2947 0.035317 GCCTGATATCACCATCGGCA 59.965 55.000 21.88 0.0 40.84 5.69 F
3266 3352 0.174389 AGTCTATGTGCCAGCGACTG 59.826 55.000 0.00 0.0 33.99 3.51 F
3456 3544 0.251341 AAGATGTGAACTGGTGGGGC 60.251 55.000 0.00 0.0 0.00 5.80 F
4125 4214 0.745468 CTCCGACCCTACTTACTGCC 59.255 60.000 0.00 0.0 0.00 4.85 F
5084 5201 2.564504 GCTCCAGGGAAGCAAGAAATTT 59.435 45.455 0.00 0.0 0.00 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1573 1651 0.773644 AGTTTGGGCCTGTCACATCT 59.226 50.000 4.53 0.00 0.00 2.90 R
2515 2597 0.996583 AGGACCGAAATTAGGGGCAA 59.003 50.000 3.19 0.00 30.75 4.52 R
2580 2663 1.372501 TCCCCCTCTCCCTTTTCTTG 58.627 55.000 0.00 0.00 0.00 3.02 R
3892 3980 0.251073 ACCACCGTTACATGTAGGGC 59.749 55.000 19.51 8.77 0.00 5.19 R
4364 4461 1.544724 TTGAGGTACAAATGCTGGCC 58.455 50.000 0.00 0.00 35.39 5.36 R
4920 5037 1.665442 GGCCTGCCAAACGACAATT 59.335 52.632 2.58 0.00 35.81 2.32 R
5084 5201 2.000048 ACCCTTTTGCCCTCCAGATTA 59.000 47.619 0.00 0.00 0.00 1.75 R
5263 5381 2.681273 AAATTTTGGCCCCCGTCCCA 62.681 55.000 0.00 0.00 0.00 4.37 R
6254 6394 0.179062 GATCGCTCCAATGCAGTCCT 60.179 55.000 0.00 0.00 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 44 2.047274 GCCTAACGCTGGCTGTGA 60.047 61.111 12.08 0.00 46.38 3.58
36 45 2.391389 GCCTAACGCTGGCTGTGAC 61.391 63.158 12.08 0.00 46.38 3.67
37 46 1.293498 CCTAACGCTGGCTGTGACT 59.707 57.895 12.08 1.29 0.00 3.41
38 47 0.737715 CCTAACGCTGGCTGTGACTC 60.738 60.000 12.08 0.00 0.00 3.36
39 48 0.244994 CTAACGCTGGCTGTGACTCT 59.755 55.000 12.08 0.00 0.00 3.24
60 70 5.847304 TCTGAGCAAATAATATCTCGCACT 58.153 37.500 0.00 0.00 0.00 4.40
176 186 0.179129 GCGATTTTGGGCACTGATGG 60.179 55.000 0.00 0.00 0.00 3.51
341 366 4.838423 TGGATTAAGTCTGACTTCTGACCA 59.162 41.667 25.12 23.38 43.22 4.02
356 381 2.076100 TGACCAAGAATGTGCGTGATC 58.924 47.619 0.00 0.00 0.00 2.92
389 448 1.134521 AGACAGGTTGACGTGCAAGAA 60.135 47.619 6.65 0.00 37.12 2.52
392 451 2.687935 ACAGGTTGACGTGCAAGAAAAT 59.312 40.909 6.65 0.00 37.12 1.82
435 494 7.241628 TGTTATCTGAAGGAGATAGGCAGATA 58.758 38.462 0.00 0.00 43.30 1.98
446 505 6.466470 GGAGATAGGCAGATAAATCACCCTTT 60.466 42.308 6.71 1.06 33.49 3.11
502 564 0.752658 AAAAAGGGAAGTGTGGCTGC 59.247 50.000 0.00 0.00 0.00 5.25
503 565 0.106015 AAAAGGGAAGTGTGGCTGCT 60.106 50.000 0.00 0.00 0.00 4.24
504 566 0.825010 AAAGGGAAGTGTGGCTGCTG 60.825 55.000 0.00 0.00 0.00 4.41
505 567 2.674380 GGGAAGTGTGGCTGCTGG 60.674 66.667 0.00 0.00 0.00 4.85
506 568 2.113986 GGAAGTGTGGCTGCTGGT 59.886 61.111 0.00 0.00 0.00 4.00
507 569 2.263741 GGAAGTGTGGCTGCTGGTG 61.264 63.158 0.00 0.00 0.00 4.17
508 570 1.227943 GAAGTGTGGCTGCTGGTGA 60.228 57.895 0.00 0.00 0.00 4.02
509 571 1.510480 GAAGTGTGGCTGCTGGTGAC 61.510 60.000 0.00 0.00 0.00 3.67
510 572 2.203195 GTGTGGCTGCTGGTGACA 60.203 61.111 0.00 0.00 39.59 3.58
533 595 4.436242 TGAACGATCACTGGAGTAAGTC 57.564 45.455 0.00 0.00 0.00 3.01
534 596 4.079970 TGAACGATCACTGGAGTAAGTCT 58.920 43.478 0.00 0.00 0.00 3.24
535 597 4.082733 TGAACGATCACTGGAGTAAGTCTG 60.083 45.833 0.00 0.00 0.00 3.51
536 598 3.687125 ACGATCACTGGAGTAAGTCTGA 58.313 45.455 0.00 0.00 0.00 3.27
537 599 3.440872 ACGATCACTGGAGTAAGTCTGAC 59.559 47.826 0.00 0.00 0.00 3.51
538 600 3.692101 CGATCACTGGAGTAAGTCTGACT 59.308 47.826 4.06 4.06 0.00 3.41
539 601 4.156922 CGATCACTGGAGTAAGTCTGACTT 59.843 45.833 24.80 24.80 41.97 3.01
540 602 5.646606 GATCACTGGAGTAAGTCTGACTTC 58.353 45.833 25.12 16.47 39.51 3.01
541 603 4.730966 TCACTGGAGTAAGTCTGACTTCT 58.269 43.478 25.12 20.26 39.51 2.85
542 604 5.141182 TCACTGGAGTAAGTCTGACTTCTT 58.859 41.667 25.12 14.98 39.51 2.52
543 605 5.241949 TCACTGGAGTAAGTCTGACTTCTTC 59.758 44.000 25.12 21.17 39.51 2.87
544 606 4.525100 ACTGGAGTAAGTCTGACTTCTTCC 59.475 45.833 28.70 28.70 39.51 3.46
545 607 4.742012 TGGAGTAAGTCTGACTTCTTCCT 58.258 43.478 31.66 22.26 39.56 3.36
546 608 5.148502 TGGAGTAAGTCTGACTTCTTCCTT 58.851 41.667 31.66 14.42 39.56 3.36
547 609 5.602978 TGGAGTAAGTCTGACTTCTTCCTTT 59.397 40.000 31.66 13.88 39.56 3.11
548 610 6.099845 TGGAGTAAGTCTGACTTCTTCCTTTT 59.900 38.462 31.66 13.34 39.56 2.27
549 611 6.993308 GGAGTAAGTCTGACTTCTTCCTTTTT 59.007 38.462 28.41 9.93 39.51 1.94
573 635 6.959639 TTTTCTGCAAGTTGGATTAAGTCT 57.040 33.333 4.75 0.00 33.76 3.24
574 636 5.947228 TTCTGCAAGTTGGATTAAGTCTG 57.053 39.130 4.75 0.00 33.76 3.51
575 637 5.227569 TCTGCAAGTTGGATTAAGTCTGA 57.772 39.130 4.75 0.00 33.76 3.27
576 638 4.997395 TCTGCAAGTTGGATTAAGTCTGAC 59.003 41.667 4.75 0.00 33.76 3.51
577 639 4.973168 TGCAAGTTGGATTAAGTCTGACT 58.027 39.130 4.06 4.06 0.00 3.41
578 640 5.376625 TGCAAGTTGGATTAAGTCTGACTT 58.623 37.500 24.80 24.80 41.97 3.01
579 641 5.470098 TGCAAGTTGGATTAAGTCTGACTTC 59.530 40.000 25.12 12.28 39.51 3.01
580 642 5.703130 GCAAGTTGGATTAAGTCTGACTTCT 59.297 40.000 25.12 14.56 39.51 2.85
581 643 6.348050 GCAAGTTGGATTAAGTCTGACTTCTG 60.348 42.308 25.12 7.79 39.51 3.02
582 644 6.672266 AGTTGGATTAAGTCTGACTTCTGA 57.328 37.500 25.12 13.57 39.51 3.27
583 645 6.459923 AGTTGGATTAAGTCTGACTTCTGAC 58.540 40.000 25.12 15.00 39.51 3.51
584 646 5.407407 TGGATTAAGTCTGACTTCTGACC 57.593 43.478 25.12 21.55 43.22 4.02
585 647 4.838423 TGGATTAAGTCTGACTTCTGACCA 59.162 41.667 25.12 23.38 43.22 4.02
586 648 5.306937 TGGATTAAGTCTGACTTCTGACCAA 59.693 40.000 25.12 13.80 43.22 3.67
587 649 5.872070 GGATTAAGTCTGACTTCTGACCAAG 59.128 44.000 25.12 0.00 43.22 3.61
588 650 6.295349 GGATTAAGTCTGACTTCTGACCAAGA 60.295 42.308 25.12 3.20 43.22 3.02
589 651 6.479972 TTAAGTCTGACTTCTGACCAAGAA 57.520 37.500 25.12 9.07 43.22 2.52
590 652 5.559148 AAGTCTGACTTCTGACCAAGAAT 57.441 39.130 17.00 0.00 44.02 2.40
591 653 4.892433 AGTCTGACTTCTGACCAAGAATG 58.108 43.478 4.06 0.00 44.02 2.67
592 654 4.346418 AGTCTGACTTCTGACCAAGAATGT 59.654 41.667 4.06 0.00 44.02 2.71
593 655 4.450419 GTCTGACTTCTGACCAAGAATGTG 59.550 45.833 0.00 0.00 44.02 3.21
594 656 3.141398 TGACTTCTGACCAAGAATGTGC 58.859 45.455 0.00 0.00 44.02 4.57
595 657 3.141398 GACTTCTGACCAAGAATGTGCA 58.859 45.455 0.00 0.00 44.02 4.57
596 658 3.755378 GACTTCTGACCAAGAATGTGCAT 59.245 43.478 0.00 0.00 44.02 3.96
597 659 3.504906 ACTTCTGACCAAGAATGTGCATG 59.495 43.478 0.00 0.00 44.02 4.06
598 660 3.421919 TCTGACCAAGAATGTGCATGA 57.578 42.857 0.00 0.00 29.54 3.07
599 661 3.959293 TCTGACCAAGAATGTGCATGAT 58.041 40.909 0.00 0.00 29.54 2.45
600 662 3.943381 TCTGACCAAGAATGTGCATGATC 59.057 43.478 0.00 0.00 29.54 2.92
601 663 2.679336 TGACCAAGAATGTGCATGATCG 59.321 45.455 0.00 0.00 0.00 3.69
602 664 2.679837 GACCAAGAATGTGCATGATCGT 59.320 45.455 0.00 0.00 0.00 3.73
603 665 2.679837 ACCAAGAATGTGCATGATCGTC 59.320 45.455 0.00 0.00 0.00 4.20
604 666 2.032550 CCAAGAATGTGCATGATCGTCC 59.967 50.000 0.00 0.00 0.00 4.79
605 667 1.959042 AGAATGTGCATGATCGTCCC 58.041 50.000 0.00 0.00 0.00 4.46
606 668 1.210234 AGAATGTGCATGATCGTCCCA 59.790 47.619 0.00 0.00 0.00 4.37
607 669 1.600957 GAATGTGCATGATCGTCCCAG 59.399 52.381 0.00 0.00 0.00 4.45
608 670 0.179037 ATGTGCATGATCGTCCCAGG 60.179 55.000 0.00 0.00 0.00 4.45
609 671 1.221840 GTGCATGATCGTCCCAGGT 59.778 57.895 0.00 0.00 0.00 4.00
610 672 0.392998 GTGCATGATCGTCCCAGGTT 60.393 55.000 0.00 0.00 0.00 3.50
611 673 0.392863 TGCATGATCGTCCCAGGTTG 60.393 55.000 0.00 0.00 0.00 3.77
612 674 0.107703 GCATGATCGTCCCAGGTTGA 60.108 55.000 0.00 0.00 0.00 3.18
613 675 1.656652 CATGATCGTCCCAGGTTGAC 58.343 55.000 0.00 0.00 0.00 3.18
618 680 2.110213 GTCCCAGGTTGACGTGCA 59.890 61.111 0.00 0.00 0.00 4.57
619 681 1.525077 GTCCCAGGTTGACGTGCAA 60.525 57.895 0.00 0.00 0.00 4.08
620 682 1.227823 TCCCAGGTTGACGTGCAAG 60.228 57.895 0.00 0.00 37.12 4.01
621 683 1.227823 CCCAGGTTGACGTGCAAGA 60.228 57.895 6.65 0.00 37.12 3.02
622 684 0.817634 CCCAGGTTGACGTGCAAGAA 60.818 55.000 6.65 0.00 37.12 2.52
623 685 1.021202 CCAGGTTGACGTGCAAGAAA 58.979 50.000 6.65 0.00 37.12 2.52
624 686 1.403679 CCAGGTTGACGTGCAAGAAAA 59.596 47.619 6.65 0.00 37.12 2.29
625 687 2.450160 CAGGTTGACGTGCAAGAAAAC 58.550 47.619 6.65 9.77 37.12 2.43
626 688 1.404035 AGGTTGACGTGCAAGAAAACC 59.596 47.619 23.08 23.08 37.12 3.27
627 689 1.535226 GGTTGACGTGCAAGAAAACCC 60.535 52.381 21.32 10.23 37.12 4.11
628 690 1.133407 GTTGACGTGCAAGAAAACCCA 59.867 47.619 6.65 0.00 37.12 4.51
629 691 1.686355 TGACGTGCAAGAAAACCCAT 58.314 45.000 6.65 0.00 0.00 4.00
630 692 1.606668 TGACGTGCAAGAAAACCCATC 59.393 47.619 6.65 0.00 0.00 3.51
631 693 0.958822 ACGTGCAAGAAAACCCATCC 59.041 50.000 6.65 0.00 0.00 3.51
632 694 0.958091 CGTGCAAGAAAACCCATCCA 59.042 50.000 0.00 0.00 0.00 3.41
633 695 1.545582 CGTGCAAGAAAACCCATCCAT 59.454 47.619 0.00 0.00 0.00 3.41
634 696 2.671914 CGTGCAAGAAAACCCATCCATG 60.672 50.000 0.00 0.00 0.00 3.66
635 697 2.299867 GTGCAAGAAAACCCATCCATGT 59.700 45.455 0.00 0.00 0.00 3.21
636 698 3.509575 GTGCAAGAAAACCCATCCATGTA 59.490 43.478 0.00 0.00 0.00 2.29
637 699 3.509575 TGCAAGAAAACCCATCCATGTAC 59.490 43.478 0.00 0.00 0.00 2.90
638 700 3.509575 GCAAGAAAACCCATCCATGTACA 59.490 43.478 0.00 0.00 0.00 2.90
639 701 4.618227 GCAAGAAAACCCATCCATGTACAC 60.618 45.833 0.00 0.00 0.00 2.90
640 702 4.657814 AGAAAACCCATCCATGTACACT 57.342 40.909 0.00 0.00 0.00 3.55
641 703 4.335416 AGAAAACCCATCCATGTACACTG 58.665 43.478 0.00 0.00 0.00 3.66
642 704 2.128771 AACCCATCCATGTACACTGC 57.871 50.000 0.00 0.00 0.00 4.40
643 705 1.289160 ACCCATCCATGTACACTGCT 58.711 50.000 0.00 0.00 0.00 4.24
644 706 1.065199 ACCCATCCATGTACACTGCTG 60.065 52.381 0.00 0.00 0.00 4.41
645 707 1.065199 CCCATCCATGTACACTGCTGT 60.065 52.381 0.00 0.00 0.00 4.40
646 708 2.618816 CCCATCCATGTACACTGCTGTT 60.619 50.000 0.00 0.00 0.00 3.16
647 709 3.370421 CCCATCCATGTACACTGCTGTTA 60.370 47.826 0.00 0.00 0.00 2.41
648 710 4.454678 CCATCCATGTACACTGCTGTTAT 58.545 43.478 0.00 0.00 0.00 1.89
649 711 4.512944 CCATCCATGTACACTGCTGTTATC 59.487 45.833 0.00 0.00 0.00 1.75
650 712 5.363101 CATCCATGTACACTGCTGTTATCT 58.637 41.667 0.00 0.00 0.00 1.98
651 713 5.011090 TCCATGTACACTGCTGTTATCTC 57.989 43.478 0.00 0.00 0.00 2.75
652 714 4.711846 TCCATGTACACTGCTGTTATCTCT 59.288 41.667 0.00 0.00 0.00 3.10
653 715 4.807834 CCATGTACACTGCTGTTATCTCTG 59.192 45.833 0.00 0.00 0.00 3.35
654 716 5.394553 CCATGTACACTGCTGTTATCTCTGA 60.395 44.000 0.00 0.00 0.00 3.27
655 717 5.722021 TGTACACTGCTGTTATCTCTGAA 57.278 39.130 0.00 0.00 0.00 3.02
656 718 5.714047 TGTACACTGCTGTTATCTCTGAAG 58.286 41.667 0.00 0.00 0.00 3.02
657 719 4.199432 ACACTGCTGTTATCTCTGAAGG 57.801 45.455 0.00 0.00 0.00 3.46
658 720 3.834813 ACACTGCTGTTATCTCTGAAGGA 59.165 43.478 0.00 0.00 0.00 3.36
659 721 4.081752 ACACTGCTGTTATCTCTGAAGGAG 60.082 45.833 0.00 0.00 43.12 3.69
669 731 4.744795 TCTCTGAAGGAGATAGCCAAAC 57.255 45.455 0.00 0.00 45.20 2.93
670 732 4.096681 TCTCTGAAGGAGATAGCCAAACA 58.903 43.478 0.00 0.00 45.20 2.83
671 733 4.718774 TCTCTGAAGGAGATAGCCAAACAT 59.281 41.667 0.00 0.00 45.20 2.71
672 734 4.774124 TCTGAAGGAGATAGCCAAACATG 58.226 43.478 0.00 0.00 0.00 3.21
673 735 3.282021 TGAAGGAGATAGCCAAACATGC 58.718 45.455 0.00 0.00 0.00 4.06
674 736 3.282021 GAAGGAGATAGCCAAACATGCA 58.718 45.455 0.00 0.00 0.00 3.96
675 737 2.648059 AGGAGATAGCCAAACATGCAC 58.352 47.619 0.00 0.00 0.00 4.57
676 738 2.025981 AGGAGATAGCCAAACATGCACA 60.026 45.455 0.00 0.00 0.00 4.57
677 739 2.754552 GGAGATAGCCAAACATGCACAA 59.245 45.455 0.00 0.00 0.00 3.33
678 740 3.193267 GGAGATAGCCAAACATGCACAAA 59.807 43.478 0.00 0.00 0.00 2.83
679 741 4.142093 GGAGATAGCCAAACATGCACAAAT 60.142 41.667 0.00 0.00 0.00 2.32
680 742 5.410355 AGATAGCCAAACATGCACAAATT 57.590 34.783 0.00 0.00 0.00 1.82
681 743 5.797051 AGATAGCCAAACATGCACAAATTT 58.203 33.333 0.00 0.00 0.00 1.82
682 744 5.870978 AGATAGCCAAACATGCACAAATTTC 59.129 36.000 0.00 0.00 0.00 2.17
683 745 3.806380 AGCCAAACATGCACAAATTTCA 58.194 36.364 0.00 0.00 0.00 2.69
684 746 3.810941 AGCCAAACATGCACAAATTTCAG 59.189 39.130 0.00 0.00 0.00 3.02
685 747 3.607542 GCCAAACATGCACAAATTTCAGC 60.608 43.478 0.00 4.77 0.00 4.26
686 748 3.560481 CCAAACATGCACAAATTTCAGCA 59.440 39.130 14.38 14.38 41.73 4.41
687 749 4.035324 CCAAACATGCACAAATTTCAGCAA 59.965 37.500 15.59 3.20 40.76 3.91
688 750 5.448768 CCAAACATGCACAAATTTCAGCAAA 60.449 36.000 15.59 0.00 40.76 3.68
689 751 5.412526 AACATGCACAAATTTCAGCAAAG 57.587 34.783 15.59 13.56 40.76 2.77
690 752 4.695396 ACATGCACAAATTTCAGCAAAGA 58.305 34.783 15.59 0.00 40.76 2.52
691 753 5.117584 ACATGCACAAATTTCAGCAAAGAA 58.882 33.333 15.59 0.00 40.76 2.52
692 754 5.585445 ACATGCACAAATTTCAGCAAAGAAA 59.415 32.000 15.59 2.22 40.76 2.52
693 755 6.093771 ACATGCACAAATTTCAGCAAAGAAAA 59.906 30.769 15.59 0.00 40.54 2.29
789 851 3.931578 ACTACAGCCACTTTGATGTCTC 58.068 45.455 0.00 0.00 0.00 3.36
815 877 9.774742 CCAAAGAGTAATGAACTTATTTGTAGC 57.225 33.333 12.10 0.00 40.31 3.58
821 883 9.595823 AGTAATGAACTTATTTGTAGCATACGT 57.404 29.630 0.00 0.00 39.08 3.57
824 886 7.056002 TGAACTTATTTGTAGCATACGTGTG 57.944 36.000 8.09 8.09 46.99 3.82
836 900 0.528924 TACGTGTGCTCCAATACGCT 59.471 50.000 0.00 0.00 39.94 5.07
838 902 0.370273 CGTGTGCTCCAATACGCTTC 59.630 55.000 0.00 0.00 0.00 3.86
872 936 5.470047 AACTTTCACTTCTGTACGGATCT 57.530 39.130 4.94 0.00 0.00 2.75
890 954 1.902508 TCTAAGCCCAAGACAGTCTGG 59.097 52.381 3.05 7.86 0.00 3.86
897 961 1.065854 CCAAGACAGTCTGGATGGGTC 60.066 57.143 6.51 0.00 0.00 4.46
905 969 3.391665 CTGGATGGGTCACGGAGGC 62.392 68.421 0.00 0.00 0.00 4.70
977 1041 2.354072 GAGCGCGAATCTCGAGGG 60.354 66.667 12.10 0.98 43.74 4.30
978 1042 2.829003 AGCGCGAATCTCGAGGGA 60.829 61.111 12.10 0.00 43.74 4.20
1005 1070 1.000896 CGGCTCAAAACCCCTCCAT 60.001 57.895 0.00 0.00 0.00 3.41
1041 1107 3.053619 GGTTTCCTCTCTCTCTCTCCTCT 60.054 52.174 0.00 0.00 0.00 3.69
1065 1131 1.682344 GGCAACTCCACCCCCAATC 60.682 63.158 0.00 0.00 34.01 2.67
1066 1132 1.682344 GCAACTCCACCCCCAATCC 60.682 63.158 0.00 0.00 0.00 3.01
1221 1292 2.405191 GTACGTACGCGGTCCCTC 59.595 66.667 16.72 0.00 43.45 4.30
1323 1400 5.826737 TGGTAAGGTAGACTACATAGAGCAC 59.173 44.000 14.48 2.21 0.00 4.40
1328 1405 6.063404 AGGTAGACTACATAGAGCACCTTAC 58.937 44.000 14.48 0.00 31.10 2.34
1336 1413 2.409948 AGAGCACCTTACCATTCAGC 57.590 50.000 0.00 0.00 0.00 4.26
1405 1482 2.026822 CCAGGAGTTGCTATTGGTCAGT 60.027 50.000 0.00 0.00 0.00 3.41
1423 1500 2.162608 CAGTCTGTTCGTGTAGCTAGCT 59.837 50.000 23.12 23.12 0.00 3.32
1441 1519 7.318141 AGCTAGCTACTTTCGTTAATGTTACA 58.682 34.615 17.69 0.00 0.00 2.41
1458 1536 7.988904 ATGTTACAGAGATAGAAACTTACGC 57.011 36.000 0.00 0.00 0.00 4.42
1459 1537 6.025896 TGTTACAGAGATAGAAACTTACGCG 58.974 40.000 3.53 3.53 0.00 6.01
1460 1538 4.698583 ACAGAGATAGAAACTTACGCGT 57.301 40.909 19.17 19.17 0.00 6.01
1461 1539 5.056894 ACAGAGATAGAAACTTACGCGTT 57.943 39.130 20.78 0.00 0.00 4.84
1462 1540 5.467705 ACAGAGATAGAAACTTACGCGTTT 58.532 37.500 20.78 5.00 39.63 3.60
1463 1541 5.924825 ACAGAGATAGAAACTTACGCGTTTT 59.075 36.000 20.78 12.80 37.24 2.43
1464 1542 6.423001 ACAGAGATAGAAACTTACGCGTTTTT 59.577 34.615 20.78 14.95 37.24 1.94
1465 1543 6.732392 CAGAGATAGAAACTTACGCGTTTTTG 59.268 38.462 20.78 8.03 37.24 2.44
1466 1544 5.379827 AGATAGAAACTTACGCGTTTTTGC 58.620 37.500 20.78 7.08 37.24 3.68
1467 1545 3.685836 AGAAACTTACGCGTTTTTGCT 57.314 38.095 20.78 9.55 37.24 3.91
1468 1546 4.799419 AGAAACTTACGCGTTTTTGCTA 57.201 36.364 20.78 0.00 37.24 3.49
1469 1547 5.159399 AGAAACTTACGCGTTTTTGCTAA 57.841 34.783 20.78 1.89 37.24 3.09
1470 1548 5.571277 AGAAACTTACGCGTTTTTGCTAAA 58.429 33.333 20.78 1.00 37.24 1.85
1471 1549 5.679792 AGAAACTTACGCGTTTTTGCTAAAG 59.320 36.000 20.78 14.95 37.24 1.85
1472 1550 3.294102 ACTTACGCGTTTTTGCTAAAGC 58.706 40.909 20.78 0.00 42.50 3.51
1473 1551 6.181695 AAACTTACGCGTTTTTGCTAAAGCA 61.182 36.000 20.78 0.00 40.27 3.91
1474 1552 8.120405 AAACTTACGCGTTTTTGCTAAAGCAC 62.120 38.462 20.78 0.00 38.82 4.40
1498 1576 7.897575 CATCTAGATGTGCTAAACCCTATTC 57.102 40.000 22.42 0.00 34.23 1.75
1499 1577 6.420913 TCTAGATGTGCTAAACCCTATTCC 57.579 41.667 0.00 0.00 0.00 3.01
1500 1578 5.903010 TCTAGATGTGCTAAACCCTATTCCA 59.097 40.000 0.00 0.00 0.00 3.53
1501 1579 5.653255 AGATGTGCTAAACCCTATTCCAT 57.347 39.130 0.00 0.00 0.00 3.41
1502 1580 6.018433 AGATGTGCTAAACCCTATTCCATT 57.982 37.500 0.00 0.00 0.00 3.16
1503 1581 5.829924 AGATGTGCTAAACCCTATTCCATTG 59.170 40.000 0.00 0.00 0.00 2.82
1504 1582 5.186256 TGTGCTAAACCCTATTCCATTGA 57.814 39.130 0.00 0.00 0.00 2.57
1505 1583 5.765510 TGTGCTAAACCCTATTCCATTGAT 58.234 37.500 0.00 0.00 0.00 2.57
1506 1584 6.194235 TGTGCTAAACCCTATTCCATTGATT 58.806 36.000 0.00 0.00 0.00 2.57
1507 1585 6.667414 TGTGCTAAACCCTATTCCATTGATTT 59.333 34.615 0.00 0.00 0.00 2.17
1508 1586 7.180051 TGTGCTAAACCCTATTCCATTGATTTT 59.820 33.333 0.00 0.00 0.00 1.82
1509 1587 8.040727 GTGCTAAACCCTATTCCATTGATTTTT 58.959 33.333 0.00 0.00 0.00 1.94
1528 1606 3.853831 TTTGCGAAGATTCATGCATGT 57.146 38.095 25.43 8.12 37.17 3.21
1529 1607 4.961435 TTTGCGAAGATTCATGCATGTA 57.039 36.364 25.43 17.45 37.17 2.29
1530 1608 5.503662 TTTGCGAAGATTCATGCATGTAT 57.496 34.783 25.43 21.49 37.17 2.29
1531 1609 5.503662 TTGCGAAGATTCATGCATGTATT 57.496 34.783 25.43 11.45 37.17 1.89
1532 1610 5.503662 TGCGAAGATTCATGCATGTATTT 57.496 34.783 25.43 14.38 31.31 1.40
1533 1611 5.893687 TGCGAAGATTCATGCATGTATTTT 58.106 33.333 25.43 21.38 31.31 1.82
1534 1612 6.331845 TGCGAAGATTCATGCATGTATTTTT 58.668 32.000 25.43 18.20 31.31 1.94
1535 1613 6.473131 TGCGAAGATTCATGCATGTATTTTTC 59.527 34.615 25.43 22.90 31.31 2.29
1536 1614 6.694411 GCGAAGATTCATGCATGTATTTTTCT 59.306 34.615 25.43 12.99 0.00 2.52
1537 1615 7.221452 GCGAAGATTCATGCATGTATTTTTCTT 59.779 33.333 25.43 19.74 0.00 2.52
1538 1616 9.079833 CGAAGATTCATGCATGTATTTTTCTTT 57.920 29.630 25.43 10.43 0.00 2.52
1564 1642 9.724839 TTTTCTTCTACTTTTTATGTTTGGTCG 57.275 29.630 0.00 0.00 0.00 4.79
1565 1643 8.665643 TTCTTCTACTTTTTATGTTTGGTCGA 57.334 30.769 0.00 0.00 0.00 4.20
1566 1644 8.306680 TCTTCTACTTTTTATGTTTGGTCGAG 57.693 34.615 0.00 0.00 0.00 4.04
1567 1645 7.929785 TCTTCTACTTTTTATGTTTGGTCGAGT 59.070 33.333 0.00 0.00 0.00 4.18
1568 1646 7.647907 TCTACTTTTTATGTTTGGTCGAGTC 57.352 36.000 0.00 0.00 0.00 3.36
1569 1647 7.211573 TCTACTTTTTATGTTTGGTCGAGTCA 58.788 34.615 0.00 0.00 0.00 3.41
1570 1648 6.056428 ACTTTTTATGTTTGGTCGAGTCAC 57.944 37.500 0.00 0.00 0.00 3.67
1571 1649 5.820947 ACTTTTTATGTTTGGTCGAGTCACT 59.179 36.000 0.00 0.00 0.00 3.41
1572 1650 6.317893 ACTTTTTATGTTTGGTCGAGTCACTT 59.682 34.615 0.00 0.00 0.00 3.16
1573 1651 7.496591 ACTTTTTATGTTTGGTCGAGTCACTTA 59.503 33.333 0.00 0.00 0.00 2.24
1574 1652 7.416154 TTTTATGTTTGGTCGAGTCACTTAG 57.584 36.000 0.00 0.00 0.00 2.18
1575 1653 4.866508 ATGTTTGGTCGAGTCACTTAGA 57.133 40.909 0.00 0.00 0.00 2.10
1576 1654 4.866508 TGTTTGGTCGAGTCACTTAGAT 57.133 40.909 0.00 0.00 0.00 1.98
1577 1655 4.556233 TGTTTGGTCGAGTCACTTAGATG 58.444 43.478 0.00 0.00 0.00 2.90
1578 1656 4.038763 TGTTTGGTCGAGTCACTTAGATGT 59.961 41.667 0.00 0.00 0.00 3.06
1579 1657 3.850122 TGGTCGAGTCACTTAGATGTG 57.150 47.619 0.00 0.00 39.15 3.21
1580 1658 3.418047 TGGTCGAGTCACTTAGATGTGA 58.582 45.455 0.00 0.00 43.72 3.58
1587 1665 1.555075 TCACTTAGATGTGACAGGCCC 59.445 52.381 0.00 0.00 41.43 5.80
1596 1674 2.303175 TGTGACAGGCCCAAACTTAAC 58.697 47.619 0.00 0.00 0.00 2.01
1604 1682 5.185056 ACAGGCCCAAACTTAACATATTGTC 59.815 40.000 0.00 0.00 0.00 3.18
1657 1735 8.794335 ATATAGCGAATGTGTCTACTCATAGA 57.206 34.615 0.00 0.00 34.91 1.98
1771 1851 3.081804 GAGGGGTATGGATAAATTGGCG 58.918 50.000 0.00 0.00 0.00 5.69
1816 1896 6.703319 TCCCTAATCAGATACGTTTGTCAAA 58.297 36.000 0.00 0.00 0.00 2.69
1827 1907 9.647797 AGATACGTTTGTCAAATTGTACTGATA 57.352 29.630 12.76 0.00 0.00 2.15
2025 2106 7.963981 TCTTTGTAGAAATACTGCTCGATTTG 58.036 34.615 0.00 0.00 32.51 2.32
2067 2148 3.382546 AGCATATTTGTCTGATTGGCCAC 59.617 43.478 3.88 0.00 0.00 5.01
2160 2241 2.420967 GGCGTATGATACCACCCAGTTT 60.421 50.000 0.00 0.00 0.00 2.66
2201 2282 4.517285 CTGAAAGTGGTATGGCATGTAGT 58.483 43.478 10.98 0.00 0.00 2.73
2202 2283 4.260985 TGAAAGTGGTATGGCATGTAGTG 58.739 43.478 10.98 0.00 0.00 2.74
2206 2287 5.887214 AGTGGTATGGCATGTAGTGATTA 57.113 39.130 10.98 0.00 0.00 1.75
2213 2294 8.850156 GGTATGGCATGTAGTGATTATTTTCTT 58.150 33.333 10.98 0.00 0.00 2.52
2218 2299 7.433425 GGCATGTAGTGATTATTTTCTTTGCTC 59.567 37.037 0.00 0.00 0.00 4.26
2234 2315 7.707624 TCTTTGCTCCTTGTATGAATGAATT 57.292 32.000 0.00 0.00 0.00 2.17
2325 2407 3.324846 TGACAGCAATCTACAACTCCTGT 59.675 43.478 0.00 0.00 42.47 4.00
2360 2442 6.882610 TGAAAAGTCTGCATGTATGTTCTT 57.117 33.333 0.00 0.00 0.00 2.52
2515 2597 0.178961 GGCCTCAAGGAAGGTTGGTT 60.179 55.000 0.00 0.00 38.79 3.67
2541 2624 5.442391 CCCCTAATTTCGGTCCTTTGATTA 58.558 41.667 0.00 0.00 0.00 1.75
2652 2735 3.664107 TGAAGGCATACTTGTGAGTGAC 58.336 45.455 0.00 0.00 40.21 3.67
2688 2771 5.181009 TGTTGATTCTGTCAGGCAATCTAG 58.819 41.667 12.88 0.00 38.29 2.43
2737 2820 3.244215 CCTTCAGAGTGTGTACCATGTGT 60.244 47.826 0.00 0.00 0.00 3.72
2807 2890 4.078537 TCGGAAGAAGGAAAATGATTGCA 58.921 39.130 0.00 0.00 37.03 4.08
2864 2947 0.035317 GCCTGATATCACCATCGGCA 59.965 55.000 21.88 0.00 40.84 5.69
2892 2975 0.524862 GGTTGGCAACTCATCTGCAG 59.475 55.000 27.77 7.63 41.78 4.41
2929 3015 4.524316 TTTTTCCTGGACATGATTGCAG 57.476 40.909 0.00 0.00 0.00 4.41
2968 3054 8.026607 GCTATCGCCCTATAATTTATTTTTGCA 58.973 33.333 0.00 0.00 0.00 4.08
3052 3138 2.416431 CCAGAATGCTTGCTAGTTTGGC 60.416 50.000 0.00 0.00 31.97 4.52
3266 3352 0.174389 AGTCTATGTGCCAGCGACTG 59.826 55.000 0.00 0.00 33.99 3.51
3342 3430 9.630098 AATTAGTGTGCTATTGTTCATTTCTTG 57.370 29.630 0.00 0.00 0.00 3.02
3382 3470 9.713740 CTGAAAATGTGCTATAAGAACTTCATC 57.286 33.333 0.00 0.00 0.00 2.92
3406 3494 6.477688 TCGAGGTTTTAGTAACTTTCAGTGTG 59.522 38.462 0.00 0.00 0.00 3.82
3456 3544 0.251341 AAGATGTGAACTGGTGGGGC 60.251 55.000 0.00 0.00 0.00 5.80
3791 3879 6.732531 TTCATACATTCTCACTTGAAGCAG 57.267 37.500 0.00 0.00 0.00 4.24
3824 3912 6.709281 TGTGGATGAAATTTTGCATGGTTAT 58.291 32.000 0.00 0.00 0.00 1.89
3892 3980 1.445942 CCCCTGGTGTGCTATACCG 59.554 63.158 0.00 0.00 41.18 4.02
3981 4069 6.539649 TCATTTCACACCTTAAGAAAGTCG 57.460 37.500 3.36 0.00 35.05 4.18
3983 4071 6.934645 TCATTTCACACCTTAAGAAAGTCGAT 59.065 34.615 3.36 0.00 35.05 3.59
4007 4095 9.125026 GATCCTACATTGTCTAAATGTCCAAAT 57.875 33.333 6.96 0.00 40.87 2.32
4077 4166 7.441890 TTCATTTTCAACGCCTAACATTAGA 57.558 32.000 0.00 0.00 32.47 2.10
4079 4168 5.873179 TTTTCAACGCCTAACATTAGAGG 57.127 39.130 0.00 0.00 35.78 3.69
4090 4179 5.807011 CCTAACATTAGAGGTGCAAATTTGC 59.193 40.000 31.67 31.67 42.56 3.68
4125 4214 0.745468 CTCCGACCCTACTTACTGCC 59.255 60.000 0.00 0.00 0.00 4.85
4537 4654 6.962182 TCTTGGTGATAGTGATGAGGAAAAT 58.038 36.000 0.00 0.00 0.00 1.82
4587 4704 4.081917 GGAAGAAGATGAAGACGAGGAAGT 60.082 45.833 0.00 0.00 0.00 3.01
4631 4748 8.458573 AGTAAATGAAGTACATGTGAAAACCA 57.541 30.769 9.11 0.00 39.39 3.67
4645 4762 9.097257 CATGTGAAAACCATAAAAGAAGTTTGT 57.903 29.630 0.00 0.00 32.97 2.83
4886 5003 3.055312 TCTCCTGTAGACGTGAAGCTCTA 60.055 47.826 0.00 0.00 0.00 2.43
4920 5037 6.726490 AGAGGAAGGTATATAACGCTTCAA 57.274 37.500 0.00 0.00 37.24 2.69
5084 5201 2.564504 GCTCCAGGGAAGCAAGAAATTT 59.435 45.455 0.00 0.00 0.00 1.82
5197 5314 8.764287 CAGTCATATATTTGTCGATTGTTGCTA 58.236 33.333 0.00 0.00 0.00 3.49
5198 5315 9.325198 AGTCATATATTTGTCGATTGTTGCTAA 57.675 29.630 0.00 0.00 0.00 3.09
5203 5320 5.743026 TTTGTCGATTGTTGCTAAAGACA 57.257 34.783 0.00 0.00 35.66 3.41
5263 5381 3.130734 TGTAAGGAGTCATAGGCCCTT 57.869 47.619 0.00 0.00 41.47 3.95
5292 5410 3.057386 GGGGCCAAAATTTTGCAAATCTG 60.057 43.478 22.90 10.28 36.86 2.90
5295 5413 3.253921 GCCAAAATTTTGCAAATCTGGCT 59.746 39.130 28.95 9.07 43.79 4.75
5312 5430 2.094675 GGCTAGCTGCTGGAAATTTGA 58.905 47.619 17.76 0.00 42.39 2.69
5360 5478 4.266265 CGTAATATCCATGTAGCTGATGCG 59.734 45.833 0.00 0.00 45.42 4.73
5512 5632 5.762825 AGTTTCCACATGCATATGATCAC 57.237 39.130 6.52 0.00 37.73 3.06
5592 5712 5.009911 TCCATAAGTTTCCACATGCATATGC 59.990 40.000 21.09 21.09 37.85 3.14
5681 5803 6.133356 TGGGGATATTTGTTCAGTTAATCCC 58.867 40.000 8.66 8.66 46.93 3.85
5724 5847 4.141251 ACCTTGTTGAACCTTGATACACCT 60.141 41.667 0.00 0.00 0.00 4.00
5725 5848 4.455877 CCTTGTTGAACCTTGATACACCTC 59.544 45.833 0.00 0.00 0.00 3.85
5742 5865 4.458295 ACACCTCTCATCTTTCTGCAAATG 59.542 41.667 0.00 0.00 0.00 2.32
5758 5881 4.202233 TGCAAATGGTTGAATCTTCTTGCA 60.202 37.500 9.57 9.57 43.95 4.08
5801 5924 6.714278 TGAATCTTCAGGATTGAGTGAATCA 58.286 36.000 4.66 0.00 43.90 2.57
5811 5934 6.024049 GGATTGAGTGAATCACATTTCGAAC 58.976 40.000 16.38 3.54 42.22 3.95
5880 6003 5.893824 CCTTTAGGGCTCCTTTGATACAAAT 59.106 40.000 0.00 0.00 34.61 2.32
5943 6066 9.247126 GTATTTCTTTCCTAGGATAGTCGTTTC 57.753 37.037 23.68 11.10 36.82 2.78
5952 6075 4.608951 AGGATAGTCGTTTCATTCGTAGC 58.391 43.478 0.00 0.00 0.00 3.58
5953 6076 3.734735 GGATAGTCGTTTCATTCGTAGCC 59.265 47.826 0.00 0.00 0.00 3.93
6020 6144 4.597507 ACTTTCCATCCACTCAAACCTCTA 59.402 41.667 0.00 0.00 0.00 2.43
6042 6166 9.971922 CTCTATGTTGAATTCCTTTGTTTTTCT 57.028 29.630 2.27 0.00 0.00 2.52
6053 6177 6.738114 TCCTTTGTTTTTCTTGTGCTATCAG 58.262 36.000 0.00 0.00 0.00 2.90
6095 6219 3.200483 GGTACAAAAGGACGTGACACTT 58.800 45.455 3.68 0.00 0.00 3.16
6124 6248 7.370383 TCCTGTGTTTTTCTTATTCTTGCATC 58.630 34.615 0.00 0.00 0.00 3.91
6170 6294 4.846367 AGGCCCTTGCATAGATATGACTTA 59.154 41.667 0.00 0.00 40.13 2.24
6173 6297 5.738909 CCCTTGCATAGATATGACTTAGGG 58.261 45.833 4.01 8.63 35.75 3.53
6174 6298 5.181748 CCTTGCATAGATATGACTTAGGGC 58.818 45.833 4.01 0.00 35.75 5.19
6178 6318 5.484998 TGCATAGATATGACTTAGGGCATGA 59.515 40.000 2.85 0.00 35.75 3.07
6263 6403 3.457380 AGTCATTCATGGTAGGACTGCAT 59.543 43.478 12.95 0.00 37.43 3.96
6276 6416 0.179062 ACTGCATTGGAGCGATCCTC 60.179 55.000 22.18 7.98 39.98 3.71
6323 6463 0.927767 ACCCGGAGACTGGAGAGTAT 59.072 55.000 0.73 0.00 38.25 2.12
6331 6471 4.142049 GGAGACTGGAGAGTATGTGAAAGG 60.142 50.000 0.00 0.00 30.16 3.11
6366 6506 6.690098 CAGATAAATGGTTGAGCATTTCGAAG 59.310 38.462 20.52 9.37 33.61 3.79
6438 6578 8.431910 ACATAAACATAATATACTCCCTCCGT 57.568 34.615 0.00 0.00 0.00 4.69
6439 6579 8.877195 ACATAAACATAATATACTCCCTCCGTT 58.123 33.333 0.00 0.00 0.00 4.44
6440 6580 9.367444 CATAAACATAATATACTCCCTCCGTTC 57.633 37.037 0.00 0.00 0.00 3.95
6441 6581 5.997384 ACATAATATACTCCCTCCGTTCC 57.003 43.478 0.00 0.00 0.00 3.62
6442 6582 5.399991 ACATAATATACTCCCTCCGTTCCA 58.600 41.667 0.00 0.00 0.00 3.53
6443 6583 5.245526 ACATAATATACTCCCTCCGTTCCAC 59.754 44.000 0.00 0.00 0.00 4.02
6444 6584 2.077687 TATACTCCCTCCGTTCCACC 57.922 55.000 0.00 0.00 0.00 4.61
6445 6585 1.041447 ATACTCCCTCCGTTCCACCG 61.041 60.000 0.00 0.00 0.00 4.94
6446 6586 4.452733 CTCCCTCCGTTCCACCGC 62.453 72.222 0.00 0.00 0.00 5.68
6463 6603 3.967335 CGCCCGCGTTTCCCAAAA 61.967 61.111 4.92 0.00 34.35 2.44
6464 6604 2.654289 GCCCGCGTTTCCCAAAAT 59.346 55.556 4.92 0.00 0.00 1.82
6465 6605 1.445410 GCCCGCGTTTCCCAAAATC 60.445 57.895 4.92 0.00 0.00 2.17
6466 6606 1.214325 CCCGCGTTTCCCAAAATCC 59.786 57.895 4.92 0.00 0.00 3.01
6467 6607 1.528292 CCCGCGTTTCCCAAAATCCA 61.528 55.000 4.92 0.00 0.00 3.41
6468 6608 0.315568 CCGCGTTTCCCAAAATCCAA 59.684 50.000 4.92 0.00 0.00 3.53
6469 6609 1.414378 CGCGTTTCCCAAAATCCAAC 58.586 50.000 0.00 0.00 0.00 3.77
6470 6610 1.000717 CGCGTTTCCCAAAATCCAACT 60.001 47.619 0.00 0.00 0.00 3.16
6471 6611 2.544903 CGCGTTTCCCAAAATCCAACTT 60.545 45.455 0.00 0.00 0.00 2.66
6472 6612 3.462982 GCGTTTCCCAAAATCCAACTTT 58.537 40.909 0.00 0.00 0.00 2.66
6473 6613 3.247411 GCGTTTCCCAAAATCCAACTTTG 59.753 43.478 0.00 0.00 34.24 2.77
6474 6614 4.688021 CGTTTCCCAAAATCCAACTTTGA 58.312 39.130 0.00 0.00 36.12 2.69
6475 6615 4.506288 CGTTTCCCAAAATCCAACTTTGAC 59.494 41.667 0.00 0.00 36.12 3.18
6476 6616 5.670485 GTTTCCCAAAATCCAACTTTGACT 58.330 37.500 0.00 0.00 36.12 3.41
6477 6617 4.935352 TCCCAAAATCCAACTTTGACTG 57.065 40.909 0.00 0.00 36.12 3.51
6478 6618 4.285863 TCCCAAAATCCAACTTTGACTGT 58.714 39.130 0.00 0.00 36.12 3.55
6479 6619 5.450453 TCCCAAAATCCAACTTTGACTGTA 58.550 37.500 0.00 0.00 36.12 2.74
6480 6620 5.894393 TCCCAAAATCCAACTTTGACTGTAA 59.106 36.000 0.00 0.00 36.12 2.41
6481 6621 6.381420 TCCCAAAATCCAACTTTGACTGTAAA 59.619 34.615 0.00 0.00 36.12 2.01
6482 6622 7.070571 TCCCAAAATCCAACTTTGACTGTAAAT 59.929 33.333 0.00 0.00 36.12 1.40
6483 6623 7.714813 CCCAAAATCCAACTTTGACTGTAAATT 59.285 33.333 0.00 0.00 36.12 1.82
6484 6624 9.108284 CCAAAATCCAACTTTGACTGTAAATTT 57.892 29.630 0.00 0.00 36.12 1.82
6488 6628 9.758651 AATCCAACTTTGACTGTAAATTTAACC 57.241 29.630 0.00 0.00 0.00 2.85
6489 6629 8.294954 TCCAACTTTGACTGTAAATTTAACCA 57.705 30.769 0.00 0.00 0.00 3.67
6490 6630 8.750298 TCCAACTTTGACTGTAAATTTAACCAA 58.250 29.630 0.00 0.05 0.00 3.67
6491 6631 8.813282 CCAACTTTGACTGTAAATTTAACCAAC 58.187 33.333 0.00 0.00 0.00 3.77
6492 6632 8.528295 CAACTTTGACTGTAAATTTAACCAACG 58.472 33.333 0.00 3.21 0.00 4.10
6493 6633 7.987649 ACTTTGACTGTAAATTTAACCAACGA 58.012 30.769 0.00 0.00 0.00 3.85
6494 6634 8.126700 ACTTTGACTGTAAATTTAACCAACGAG 58.873 33.333 0.00 1.52 0.00 4.18
6495 6635 7.789273 TTGACTGTAAATTTAACCAACGAGA 57.211 32.000 0.00 0.00 0.00 4.04
6496 6636 7.181143 TGACTGTAAATTTAACCAACGAGAC 57.819 36.000 0.00 0.00 0.00 3.36
6497 6637 6.203338 TGACTGTAAATTTAACCAACGAGACC 59.797 38.462 0.00 0.00 0.00 3.85
6498 6638 5.178067 ACTGTAAATTTAACCAACGAGACCG 59.822 40.000 0.00 0.00 42.50 4.79
6499 6639 5.295950 TGTAAATTTAACCAACGAGACCGA 58.704 37.500 0.00 0.00 39.50 4.69
6500 6640 5.933463 TGTAAATTTAACCAACGAGACCGAT 59.067 36.000 0.00 0.00 39.50 4.18
6501 6641 5.952526 AAATTTAACCAACGAGACCGATT 57.047 34.783 0.00 0.00 39.50 3.34
6502 6642 4.939509 ATTTAACCAACGAGACCGATTG 57.060 40.909 0.00 0.00 39.50 2.67
6503 6643 3.389925 TTAACCAACGAGACCGATTGT 57.610 42.857 0.00 0.00 39.50 2.71
6504 6644 1.508632 AACCAACGAGACCGATTGTG 58.491 50.000 0.00 0.00 39.50 3.33
6505 6645 0.320421 ACCAACGAGACCGATTGTGG 60.320 55.000 0.00 0.00 39.50 4.17
6506 6646 1.635663 CCAACGAGACCGATTGTGGC 61.636 60.000 0.00 0.00 39.50 5.01
6507 6647 1.736645 AACGAGACCGATTGTGGCG 60.737 57.895 0.00 0.00 39.50 5.69
6508 6648 2.149803 AACGAGACCGATTGTGGCGA 62.150 55.000 0.00 0.00 39.50 5.54
6509 6649 1.874019 CGAGACCGATTGTGGCGAG 60.874 63.158 0.00 0.00 38.22 5.03
6510 6650 1.519455 GAGACCGATTGTGGCGAGG 60.519 63.158 0.00 0.00 0.00 4.63
6511 6651 1.945354 GAGACCGATTGTGGCGAGGA 61.945 60.000 0.00 0.00 0.00 3.71
6512 6652 1.810030 GACCGATTGTGGCGAGGAC 60.810 63.158 0.00 0.00 0.00 3.85
6513 6653 2.264480 CCGATTGTGGCGAGGACA 59.736 61.111 0.00 0.00 0.00 4.02
6514 6654 1.375396 CCGATTGTGGCGAGGACAA 60.375 57.895 0.00 0.00 37.70 3.18
6515 6655 0.953471 CCGATTGTGGCGAGGACAAA 60.953 55.000 0.00 0.00 36.90 2.83
6516 6656 0.871722 CGATTGTGGCGAGGACAAAA 59.128 50.000 0.00 0.00 36.90 2.44
6517 6657 1.265635 CGATTGTGGCGAGGACAAAAA 59.734 47.619 0.00 0.00 36.90 1.94
6518 6658 2.095263 CGATTGTGGCGAGGACAAAAAT 60.095 45.455 0.00 0.00 36.90 1.82
6519 6659 2.791383 TTGTGGCGAGGACAAAAATG 57.209 45.000 0.00 0.00 30.35 2.32
6520 6660 1.974265 TGTGGCGAGGACAAAAATGA 58.026 45.000 0.00 0.00 0.00 2.57
6521 6661 2.513753 TGTGGCGAGGACAAAAATGAT 58.486 42.857 0.00 0.00 0.00 2.45
6522 6662 2.890311 TGTGGCGAGGACAAAAATGATT 59.110 40.909 0.00 0.00 0.00 2.57
6523 6663 3.244976 GTGGCGAGGACAAAAATGATTG 58.755 45.455 0.00 0.00 36.37 2.67
6524 6664 2.262211 GGCGAGGACAAAAATGATTGC 58.738 47.619 0.00 0.00 33.52 3.56
6525 6665 1.913403 GCGAGGACAAAAATGATTGCG 59.087 47.619 0.00 0.00 33.52 4.85
6526 6666 2.518949 CGAGGACAAAAATGATTGCGG 58.481 47.619 0.00 0.00 33.52 5.69
6527 6667 2.262211 GAGGACAAAAATGATTGCGGC 58.738 47.619 0.00 0.00 33.52 6.53
6528 6668 0.991344 GGACAAAAATGATTGCGGCG 59.009 50.000 0.51 0.51 33.52 6.46
6529 6669 0.991344 GACAAAAATGATTGCGGCGG 59.009 50.000 9.78 0.00 33.52 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 42 5.923114 GCGAGATATTATTTGCTCAGAGTCA 59.077 40.000 0.00 0.00 0.00 3.41
34 43 5.923114 TGCGAGATATTATTTGCTCAGAGTC 59.077 40.000 0.00 0.00 0.00 3.36
35 44 5.694006 GTGCGAGATATTATTTGCTCAGAGT 59.306 40.000 0.00 0.00 0.00 3.24
36 45 5.925397 AGTGCGAGATATTATTTGCTCAGAG 59.075 40.000 0.00 0.00 0.00 3.35
37 46 5.693555 CAGTGCGAGATATTATTTGCTCAGA 59.306 40.000 0.00 0.00 0.00 3.27
38 47 5.107182 CCAGTGCGAGATATTATTTGCTCAG 60.107 44.000 0.00 0.00 0.00 3.35
39 48 4.751600 CCAGTGCGAGATATTATTTGCTCA 59.248 41.667 0.00 0.00 0.00 4.26
60 70 3.057548 CATGACCGCAGCTTGCCA 61.058 61.111 0.00 0.00 41.12 4.92
131 141 8.592998 CCATTGAACTTACTACGAACTACATTC 58.407 37.037 0.00 0.00 0.00 2.67
133 143 6.534079 GCCATTGAACTTACTACGAACTACAT 59.466 38.462 0.00 0.00 0.00 2.29
134 144 5.865552 GCCATTGAACTTACTACGAACTACA 59.134 40.000 0.00 0.00 0.00 2.74
135 145 5.004156 CGCCATTGAACTTACTACGAACTAC 59.996 44.000 0.00 0.00 0.00 2.73
136 146 5.097529 CGCCATTGAACTTACTACGAACTA 58.902 41.667 0.00 0.00 0.00 2.24
137 147 3.924686 CGCCATTGAACTTACTACGAACT 59.075 43.478 0.00 0.00 0.00 3.01
141 151 5.464965 AAATCGCCATTGAACTTACTACG 57.535 39.130 0.00 0.00 0.00 3.51
142 152 6.027749 CCAAAATCGCCATTGAACTTACTAC 58.972 40.000 0.00 0.00 0.00 2.73
143 153 5.124776 CCCAAAATCGCCATTGAACTTACTA 59.875 40.000 0.00 0.00 0.00 1.82
144 154 4.082245 CCCAAAATCGCCATTGAACTTACT 60.082 41.667 0.00 0.00 0.00 2.24
145 155 4.173256 CCCAAAATCGCCATTGAACTTAC 58.827 43.478 0.00 0.00 0.00 2.34
146 156 3.367910 GCCCAAAATCGCCATTGAACTTA 60.368 43.478 0.00 0.00 0.00 2.24
147 157 2.612721 GCCCAAAATCGCCATTGAACTT 60.613 45.455 0.00 0.00 0.00 2.66
151 161 0.246086 GTGCCCAAAATCGCCATTGA 59.754 50.000 0.00 0.00 0.00 2.57
176 186 1.586154 CGGCAAATGGACTCCACCAC 61.586 60.000 0.00 0.00 43.03 4.16
273 283 3.692101 AGTCAGACTTACTCCAGTGATCG 59.308 47.826 0.00 0.00 0.00 3.69
322 343 6.479972 TTCTTGGTCAGAAGTCAGACTTAA 57.520 37.500 16.14 4.93 38.80 1.85
341 366 1.359848 GGACGATCACGCACATTCTT 58.640 50.000 0.00 0.00 43.96 2.52
356 381 2.311463 ACCTGTCTATCAGATGGGACG 58.689 52.381 11.35 7.78 46.27 4.79
389 448 3.949754 CAGCAGTGTACATGGATGGATTT 59.050 43.478 0.00 0.00 0.00 2.17
392 451 1.908619 ACAGCAGTGTACATGGATGGA 59.091 47.619 16.12 0.00 34.05 3.41
435 494 3.387374 TGTGCATGTTCAAAGGGTGATTT 59.613 39.130 0.00 0.00 35.70 2.17
446 505 4.056092 TGCTGAAATTTGTGCATGTTCA 57.944 36.364 9.73 0.00 0.00 3.18
485 547 0.825010 CAGCAGCCACACTTCCCTTT 60.825 55.000 0.00 0.00 0.00 3.11
486 548 1.228367 CAGCAGCCACACTTCCCTT 60.228 57.895 0.00 0.00 0.00 3.95
487 549 2.433446 CAGCAGCCACACTTCCCT 59.567 61.111 0.00 0.00 0.00 4.20
488 550 2.674380 CCAGCAGCCACACTTCCC 60.674 66.667 0.00 0.00 0.00 3.97
489 551 2.113986 ACCAGCAGCCACACTTCC 59.886 61.111 0.00 0.00 0.00 3.46
490 552 1.227943 TCACCAGCAGCCACACTTC 60.228 57.895 0.00 0.00 0.00 3.01
491 553 1.526917 GTCACCAGCAGCCACACTT 60.527 57.895 0.00 0.00 0.00 3.16
492 554 2.111878 GTCACCAGCAGCCACACT 59.888 61.111 0.00 0.00 0.00 3.55
493 555 2.203195 TGTCACCAGCAGCCACAC 60.203 61.111 0.00 0.00 0.00 3.82
494 556 2.111669 CTGTCACCAGCAGCCACA 59.888 61.111 0.00 0.00 0.00 4.17
495 557 2.111878 ACTGTCACCAGCAGCCAC 59.888 61.111 0.00 0.00 42.81 5.01
496 558 1.981951 TTCACTGTCACCAGCAGCCA 61.982 55.000 0.00 0.00 42.81 4.75
497 559 1.227943 TTCACTGTCACCAGCAGCC 60.228 57.895 0.00 0.00 42.81 4.85
498 560 1.835483 CGTTCACTGTCACCAGCAGC 61.835 60.000 0.00 0.00 42.81 5.25
499 561 0.249447 TCGTTCACTGTCACCAGCAG 60.249 55.000 0.00 0.00 42.81 4.24
500 562 0.392706 ATCGTTCACTGTCACCAGCA 59.607 50.000 0.00 0.00 42.81 4.41
501 563 1.071605 GATCGTTCACTGTCACCAGC 58.928 55.000 0.00 0.00 42.81 4.85
502 564 2.438868 TGATCGTTCACTGTCACCAG 57.561 50.000 0.00 0.00 44.68 4.00
512 574 4.079970 AGACTTACTCCAGTGATCGTTCA 58.920 43.478 0.00 0.00 0.00 3.18
513 575 4.156190 TCAGACTTACTCCAGTGATCGTTC 59.844 45.833 0.00 0.00 0.00 3.95
514 576 4.079970 TCAGACTTACTCCAGTGATCGTT 58.920 43.478 0.00 0.00 0.00 3.85
515 577 3.440872 GTCAGACTTACTCCAGTGATCGT 59.559 47.826 0.00 0.00 0.00 3.73
516 578 3.692101 AGTCAGACTTACTCCAGTGATCG 59.308 47.826 0.00 0.00 0.00 3.69
517 579 5.417580 AGAAGTCAGACTTACTCCAGTGATC 59.582 44.000 16.14 0.00 38.80 2.92
518 580 5.329399 AGAAGTCAGACTTACTCCAGTGAT 58.671 41.667 16.14 0.00 38.80 3.06
519 581 4.730966 AGAAGTCAGACTTACTCCAGTGA 58.269 43.478 16.14 0.00 38.80 3.41
520 582 5.461032 AAGAAGTCAGACTTACTCCAGTG 57.539 43.478 16.14 0.00 38.80 3.66
521 583 4.525100 GGAAGAAGTCAGACTTACTCCAGT 59.475 45.833 25.59 9.69 38.80 4.00
522 584 4.770010 AGGAAGAAGTCAGACTTACTCCAG 59.230 45.833 29.04 0.00 38.80 3.86
523 585 4.742012 AGGAAGAAGTCAGACTTACTCCA 58.258 43.478 29.04 0.00 38.80 3.86
524 586 5.731957 AAGGAAGAAGTCAGACTTACTCC 57.268 43.478 24.24 24.24 38.80 3.85
549 611 7.068103 TCAGACTTAATCCAACTTGCAGAAAAA 59.932 33.333 0.00 0.00 0.00 1.94
550 612 6.545666 TCAGACTTAATCCAACTTGCAGAAAA 59.454 34.615 0.00 0.00 0.00 2.29
551 613 6.017109 GTCAGACTTAATCCAACTTGCAGAAA 60.017 38.462 0.00 0.00 0.00 2.52
552 614 5.470098 GTCAGACTTAATCCAACTTGCAGAA 59.530 40.000 0.00 0.00 0.00 3.02
553 615 4.997395 GTCAGACTTAATCCAACTTGCAGA 59.003 41.667 0.00 0.00 0.00 4.26
554 616 4.999950 AGTCAGACTTAATCCAACTTGCAG 59.000 41.667 0.00 0.00 0.00 4.41
555 617 4.973168 AGTCAGACTTAATCCAACTTGCA 58.027 39.130 0.00 0.00 0.00 4.08
556 618 5.703130 AGAAGTCAGACTTAATCCAACTTGC 59.297 40.000 16.14 0.00 38.80 4.01
557 619 6.931281 TCAGAAGTCAGACTTAATCCAACTTG 59.069 38.462 16.14 4.45 38.80 3.16
558 620 6.931840 GTCAGAAGTCAGACTTAATCCAACTT 59.068 38.462 16.14 0.00 38.80 2.66
559 621 6.459923 GTCAGAAGTCAGACTTAATCCAACT 58.540 40.000 16.14 4.33 38.80 3.16
560 622 5.639931 GGTCAGAAGTCAGACTTAATCCAAC 59.360 44.000 16.14 8.52 38.80 3.77
561 623 5.306937 TGGTCAGAAGTCAGACTTAATCCAA 59.693 40.000 16.14 0.00 38.80 3.53
562 624 4.838423 TGGTCAGAAGTCAGACTTAATCCA 59.162 41.667 16.14 17.10 38.80 3.41
563 625 5.407407 TGGTCAGAAGTCAGACTTAATCC 57.593 43.478 16.14 15.05 38.80 3.01
564 626 6.692486 TCTTGGTCAGAAGTCAGACTTAATC 58.308 40.000 16.14 4.22 38.80 1.75
565 627 6.672266 TCTTGGTCAGAAGTCAGACTTAAT 57.328 37.500 16.14 5.29 38.80 1.40
566 628 6.479972 TTCTTGGTCAGAAGTCAGACTTAA 57.520 37.500 16.14 4.93 38.80 1.85
567 629 6.042093 ACATTCTTGGTCAGAAGTCAGACTTA 59.958 38.462 16.14 0.00 45.11 2.24
568 630 5.163258 ACATTCTTGGTCAGAAGTCAGACTT 60.163 40.000 16.11 16.11 45.11 3.01
569 631 4.346418 ACATTCTTGGTCAGAAGTCAGACT 59.654 41.667 0.00 0.00 45.11 3.24
570 632 4.450419 CACATTCTTGGTCAGAAGTCAGAC 59.550 45.833 0.00 0.00 45.11 3.51
571 633 4.635223 CACATTCTTGGTCAGAAGTCAGA 58.365 43.478 0.00 0.00 45.11 3.27
572 634 3.188048 GCACATTCTTGGTCAGAAGTCAG 59.812 47.826 0.00 0.00 45.11 3.51
573 635 3.141398 GCACATTCTTGGTCAGAAGTCA 58.859 45.455 0.00 0.00 45.11 3.41
574 636 3.141398 TGCACATTCTTGGTCAGAAGTC 58.859 45.455 0.00 0.00 45.11 3.01
575 637 3.213206 TGCACATTCTTGGTCAGAAGT 57.787 42.857 0.00 0.00 45.11 3.01
576 638 3.754850 TCATGCACATTCTTGGTCAGAAG 59.245 43.478 0.00 0.00 45.11 2.85
577 639 3.753815 TCATGCACATTCTTGGTCAGAA 58.246 40.909 0.00 0.00 46.01 3.02
578 640 3.421919 TCATGCACATTCTTGGTCAGA 57.578 42.857 0.00 0.00 0.00 3.27
579 641 3.242641 CGATCATGCACATTCTTGGTCAG 60.243 47.826 0.00 0.00 0.00 3.51
580 642 2.679336 CGATCATGCACATTCTTGGTCA 59.321 45.455 0.00 0.00 0.00 4.02
581 643 2.679837 ACGATCATGCACATTCTTGGTC 59.320 45.455 0.00 0.00 0.00 4.02
582 644 2.679837 GACGATCATGCACATTCTTGGT 59.320 45.455 0.00 0.00 0.00 3.67
583 645 2.032550 GGACGATCATGCACATTCTTGG 59.967 50.000 0.00 0.00 0.00 3.61
584 646 2.032550 GGGACGATCATGCACATTCTTG 59.967 50.000 0.00 0.00 0.00 3.02
585 647 2.292267 GGGACGATCATGCACATTCTT 58.708 47.619 0.00 0.00 0.00 2.52
586 648 1.210234 TGGGACGATCATGCACATTCT 59.790 47.619 0.00 0.00 0.00 2.40
587 649 1.600957 CTGGGACGATCATGCACATTC 59.399 52.381 0.00 0.00 0.00 2.67
588 650 1.671979 CTGGGACGATCATGCACATT 58.328 50.000 0.00 0.00 0.00 2.71
589 651 0.179037 CCTGGGACGATCATGCACAT 60.179 55.000 0.00 0.00 0.00 3.21
590 652 1.221566 CCTGGGACGATCATGCACA 59.778 57.895 0.00 0.00 0.00 4.57
591 653 0.392998 AACCTGGGACGATCATGCAC 60.393 55.000 0.00 0.00 0.00 4.57
592 654 0.392863 CAACCTGGGACGATCATGCA 60.393 55.000 0.00 0.00 0.00 3.96
593 655 0.107703 TCAACCTGGGACGATCATGC 60.108 55.000 0.00 0.00 0.00 4.06
594 656 1.656652 GTCAACCTGGGACGATCATG 58.343 55.000 0.00 0.00 0.00 3.07
601 663 1.507141 CTTGCACGTCAACCTGGGAC 61.507 60.000 0.00 0.00 0.00 4.46
602 664 1.227823 CTTGCACGTCAACCTGGGA 60.228 57.895 0.00 0.00 0.00 4.37
603 665 0.817634 TTCTTGCACGTCAACCTGGG 60.818 55.000 0.00 0.00 0.00 4.45
604 666 1.021202 TTTCTTGCACGTCAACCTGG 58.979 50.000 0.00 0.00 0.00 4.45
605 667 2.450160 GTTTTCTTGCACGTCAACCTG 58.550 47.619 0.00 0.00 0.00 4.00
606 668 1.404035 GGTTTTCTTGCACGTCAACCT 59.596 47.619 14.78 0.00 32.47 3.50
607 669 1.535226 GGGTTTTCTTGCACGTCAACC 60.535 52.381 14.10 14.10 34.13 3.77
608 670 1.133407 TGGGTTTTCTTGCACGTCAAC 59.867 47.619 0.00 0.00 0.00 3.18
609 671 1.464734 TGGGTTTTCTTGCACGTCAA 58.535 45.000 0.00 0.00 0.00 3.18
610 672 1.606668 GATGGGTTTTCTTGCACGTCA 59.393 47.619 0.00 0.00 0.00 4.35
611 673 1.068541 GGATGGGTTTTCTTGCACGTC 60.069 52.381 0.00 0.00 0.00 4.34
612 674 0.958822 GGATGGGTTTTCTTGCACGT 59.041 50.000 0.00 0.00 0.00 4.49
613 675 0.958091 TGGATGGGTTTTCTTGCACG 59.042 50.000 0.00 0.00 0.00 5.34
614 676 2.299867 ACATGGATGGGTTTTCTTGCAC 59.700 45.455 0.00 0.00 0.00 4.57
615 677 2.607499 ACATGGATGGGTTTTCTTGCA 58.393 42.857 0.00 0.00 0.00 4.08
616 678 3.509575 TGTACATGGATGGGTTTTCTTGC 59.490 43.478 0.00 0.00 0.00 4.01
617 679 4.766891 AGTGTACATGGATGGGTTTTCTTG 59.233 41.667 0.00 0.00 0.00 3.02
618 680 4.766891 CAGTGTACATGGATGGGTTTTCTT 59.233 41.667 0.00 0.00 0.00 2.52
619 681 4.335416 CAGTGTACATGGATGGGTTTTCT 58.665 43.478 0.00 0.00 0.00 2.52
620 682 3.119495 GCAGTGTACATGGATGGGTTTTC 60.119 47.826 0.00 0.00 0.00 2.29
621 683 2.825532 GCAGTGTACATGGATGGGTTTT 59.174 45.455 0.00 0.00 0.00 2.43
622 684 2.041620 AGCAGTGTACATGGATGGGTTT 59.958 45.455 0.00 0.00 0.00 3.27
623 685 1.635487 AGCAGTGTACATGGATGGGTT 59.365 47.619 0.00 0.00 0.00 4.11
624 686 1.065199 CAGCAGTGTACATGGATGGGT 60.065 52.381 0.00 0.00 0.00 4.51
625 687 1.065199 ACAGCAGTGTACATGGATGGG 60.065 52.381 16.12 0.72 34.05 4.00
626 688 2.408271 ACAGCAGTGTACATGGATGG 57.592 50.000 16.12 2.07 34.05 3.51
627 689 5.363101 AGATAACAGCAGTGTACATGGATG 58.637 41.667 11.84 11.84 35.08 3.51
628 690 5.365025 AGAGATAACAGCAGTGTACATGGAT 59.635 40.000 0.00 0.00 35.08 3.41
629 691 4.711846 AGAGATAACAGCAGTGTACATGGA 59.288 41.667 0.00 0.00 35.08 3.41
630 692 4.807834 CAGAGATAACAGCAGTGTACATGG 59.192 45.833 0.00 0.00 35.08 3.66
631 693 5.654497 TCAGAGATAACAGCAGTGTACATG 58.346 41.667 0.00 0.00 35.08 3.21
632 694 5.921962 TCAGAGATAACAGCAGTGTACAT 57.078 39.130 0.00 0.00 35.08 2.29
633 695 5.336770 CCTTCAGAGATAACAGCAGTGTACA 60.337 44.000 0.00 0.00 35.08 2.90
634 696 5.105716 TCCTTCAGAGATAACAGCAGTGTAC 60.106 44.000 0.00 0.00 35.08 2.90
635 697 5.016831 TCCTTCAGAGATAACAGCAGTGTA 58.983 41.667 0.00 0.00 35.08 2.90
636 698 3.834813 TCCTTCAGAGATAACAGCAGTGT 59.165 43.478 0.00 0.00 39.19 3.55
637 699 4.431809 CTCCTTCAGAGATAACAGCAGTG 58.568 47.826 0.00 0.00 46.50 3.66
638 700 4.734398 CTCCTTCAGAGATAACAGCAGT 57.266 45.455 0.00 0.00 46.50 4.40
649 711 4.478206 TGTTTGGCTATCTCCTTCAGAG 57.522 45.455 0.00 0.00 44.75 3.35
650 712 4.774124 CATGTTTGGCTATCTCCTTCAGA 58.226 43.478 0.00 0.00 34.78 3.27
651 713 3.314635 GCATGTTTGGCTATCTCCTTCAG 59.685 47.826 0.00 0.00 0.00 3.02
652 714 3.282021 GCATGTTTGGCTATCTCCTTCA 58.718 45.455 0.00 0.00 0.00 3.02
653 715 3.065925 GTGCATGTTTGGCTATCTCCTTC 59.934 47.826 0.00 0.00 0.00 3.46
654 716 3.019564 GTGCATGTTTGGCTATCTCCTT 58.980 45.455 0.00 0.00 0.00 3.36
655 717 2.025981 TGTGCATGTTTGGCTATCTCCT 60.026 45.455 0.00 0.00 0.00 3.69
656 718 2.368439 TGTGCATGTTTGGCTATCTCC 58.632 47.619 0.00 0.00 0.00 3.71
657 719 4.439305 TTTGTGCATGTTTGGCTATCTC 57.561 40.909 0.00 0.00 0.00 2.75
658 720 5.410355 AATTTGTGCATGTTTGGCTATCT 57.590 34.783 0.00 0.00 0.00 1.98
659 721 5.638657 TGAAATTTGTGCATGTTTGGCTATC 59.361 36.000 0.00 0.00 0.00 2.08
660 722 5.549347 TGAAATTTGTGCATGTTTGGCTAT 58.451 33.333 0.00 0.00 0.00 2.97
661 723 4.953667 TGAAATTTGTGCATGTTTGGCTA 58.046 34.783 0.00 0.00 0.00 3.93
662 724 3.806380 TGAAATTTGTGCATGTTTGGCT 58.194 36.364 0.00 0.00 0.00 4.75
663 725 3.607542 GCTGAAATTTGTGCATGTTTGGC 60.608 43.478 0.00 0.00 0.00 4.52
664 726 3.560481 TGCTGAAATTTGTGCATGTTTGG 59.440 39.130 9.73 0.00 0.00 3.28
665 727 4.797693 TGCTGAAATTTGTGCATGTTTG 57.202 36.364 9.73 0.00 0.00 2.93
666 728 5.585445 TCTTTGCTGAAATTTGTGCATGTTT 59.415 32.000 13.31 0.00 35.27 2.83
667 729 5.117584 TCTTTGCTGAAATTTGTGCATGTT 58.882 33.333 13.31 0.00 35.27 2.71
668 730 4.695396 TCTTTGCTGAAATTTGTGCATGT 58.305 34.783 13.31 0.00 35.27 3.21
669 731 5.660629 TTCTTTGCTGAAATTTGTGCATG 57.339 34.783 13.31 10.37 35.27 4.06
670 732 6.093771 TGTTTTCTTTGCTGAAATTTGTGCAT 59.906 30.769 13.31 0.00 36.07 3.96
671 733 5.410746 TGTTTTCTTTGCTGAAATTTGTGCA 59.589 32.000 9.73 9.73 36.07 4.57
672 734 5.867166 TGTTTTCTTTGCTGAAATTTGTGC 58.133 33.333 0.00 0.00 36.07 4.57
673 735 8.725212 TTTTGTTTTCTTTGCTGAAATTTGTG 57.275 26.923 0.00 0.00 36.07 3.33
700 762 2.433446 CAGCAGCCACACTTCCCT 59.567 61.111 0.00 0.00 0.00 4.20
789 851 9.774742 GCTACAAATAAGTTCATTACTCTTTGG 57.225 33.333 13.08 3.55 40.36 3.28
797 859 9.373603 ACACGTATGCTACAAATAAGTTCATTA 57.626 29.630 0.00 0.00 0.00 1.90
801 863 5.957796 GCACACGTATGCTACAAATAAGTTC 59.042 40.000 12.49 0.00 42.62 3.01
803 865 5.464965 GCACACGTATGCTACAAATAAGT 57.535 39.130 12.49 0.00 42.62 2.24
815 877 1.257936 GCGTATTGGAGCACACGTATG 59.742 52.381 0.00 0.00 36.78 2.39
816 878 1.136305 AGCGTATTGGAGCACACGTAT 59.864 47.619 0.00 0.00 36.78 3.06
819 881 0.370273 GAAGCGTATTGGAGCACACG 59.630 55.000 0.00 0.00 37.45 4.49
821 883 1.275010 TGAGAAGCGTATTGGAGCACA 59.725 47.619 0.00 0.00 35.48 4.57
824 886 4.622701 ATTTTGAGAAGCGTATTGGAGC 57.377 40.909 0.00 0.00 0.00 4.70
826 888 7.915293 TTCTTATTTTGAGAAGCGTATTGGA 57.085 32.000 0.00 0.00 0.00 3.53
831 895 8.832521 TGAAAGTTTCTTATTTTGAGAAGCGTA 58.167 29.630 16.33 0.00 38.76 4.42
855 919 3.380637 GGCTTAGATCCGTACAGAAGTGA 59.619 47.826 0.00 0.00 0.00 3.41
872 936 2.024176 TCCAGACTGTCTTGGGCTTA 57.976 50.000 19.36 4.73 0.00 3.09
890 954 2.187946 CTGCCTCCGTGACCCATC 59.812 66.667 0.00 0.00 0.00 3.51
973 1037 1.950973 GAGCCGGTGTCTCTTCCCTC 61.951 65.000 1.90 0.00 0.00 4.30
977 1041 1.531578 GTTTTGAGCCGGTGTCTCTTC 59.468 52.381 1.90 0.00 0.00 2.87
978 1042 1.594331 GTTTTGAGCCGGTGTCTCTT 58.406 50.000 1.90 0.00 0.00 2.85
1005 1070 1.365699 GAAACCCTAAGAATGCGCGA 58.634 50.000 12.10 0.00 0.00 5.87
1041 1107 3.948719 GGTGGAGTTGCCCGGACA 61.949 66.667 0.73 0.00 34.97 4.02
1221 1292 2.808315 CGAGGAGGTGATCGGGTG 59.192 66.667 0.00 0.00 35.33 4.61
1323 1400 6.632909 TCAAATGAATTGCTGAATGGTAAGG 58.367 36.000 0.00 0.00 38.98 2.69
1328 1405 6.403333 CAACTCAAATGAATTGCTGAATGG 57.597 37.500 0.00 0.00 38.98 3.16
1380 1457 4.079253 GACCAATAGCAACTCCTGGAAAA 58.921 43.478 0.00 0.00 0.00 2.29
1441 1519 6.617953 GCAAAAACGCGTAAGTTTCTATCTCT 60.618 38.462 14.46 0.00 42.81 3.10
1449 1527 4.205588 GCTTTAGCAAAAACGCGTAAGTTT 59.794 37.500 14.46 11.00 42.27 2.66
1450 1528 3.727227 GCTTTAGCAAAAACGCGTAAGTT 59.273 39.130 14.46 4.29 41.59 2.66
1451 1529 3.294102 GCTTTAGCAAAAACGCGTAAGT 58.706 40.909 14.46 0.00 41.59 2.24
1452 1530 3.928252 GCTTTAGCAAAAACGCGTAAG 57.072 42.857 14.46 11.17 41.59 2.34
1474 1552 6.876257 GGAATAGGGTTTAGCACATCTAGATG 59.124 42.308 27.63 27.63 44.15 2.90
1475 1553 6.558775 TGGAATAGGGTTTAGCACATCTAGAT 59.441 38.462 0.00 0.00 0.00 1.98
1476 1554 5.903010 TGGAATAGGGTTTAGCACATCTAGA 59.097 40.000 0.00 0.00 0.00 2.43
1477 1555 6.174720 TGGAATAGGGTTTAGCACATCTAG 57.825 41.667 0.00 0.00 0.00 2.43
1478 1556 6.763715 ATGGAATAGGGTTTAGCACATCTA 57.236 37.500 0.00 0.00 0.00 1.98
1479 1557 5.653255 ATGGAATAGGGTTTAGCACATCT 57.347 39.130 0.00 0.00 0.00 2.90
1480 1558 5.827797 TCAATGGAATAGGGTTTAGCACATC 59.172 40.000 0.00 0.00 0.00 3.06
1481 1559 5.765510 TCAATGGAATAGGGTTTAGCACAT 58.234 37.500 0.00 0.00 0.00 3.21
1482 1560 5.186256 TCAATGGAATAGGGTTTAGCACA 57.814 39.130 0.00 0.00 0.00 4.57
1483 1561 6.715347 AATCAATGGAATAGGGTTTAGCAC 57.285 37.500 0.00 0.00 0.00 4.40
1484 1562 7.732222 AAAATCAATGGAATAGGGTTTAGCA 57.268 32.000 0.00 0.00 0.00 3.49
1506 1584 4.558178 ACATGCATGAATCTTCGCAAAAA 58.442 34.783 32.75 0.00 38.01 1.94
1507 1585 4.177165 ACATGCATGAATCTTCGCAAAA 57.823 36.364 32.75 0.00 38.01 2.44
1508 1586 3.853831 ACATGCATGAATCTTCGCAAA 57.146 38.095 32.75 0.00 38.01 3.68
1509 1587 5.503662 AATACATGCATGAATCTTCGCAA 57.496 34.783 32.75 5.33 38.01 4.85
1510 1588 5.503662 AAATACATGCATGAATCTTCGCA 57.496 34.783 32.75 6.46 39.01 5.10
1511 1589 6.694411 AGAAAAATACATGCATGAATCTTCGC 59.306 34.615 32.75 14.46 0.00 4.70
1512 1590 8.624701 AAGAAAAATACATGCATGAATCTTCG 57.375 30.769 32.75 4.14 0.00 3.79
1538 1616 9.724839 CGACCAAACATAAAAAGTAGAAGAAAA 57.275 29.630 0.00 0.00 0.00 2.29
1539 1617 9.111613 TCGACCAAACATAAAAAGTAGAAGAAA 57.888 29.630 0.00 0.00 0.00 2.52
1540 1618 8.665643 TCGACCAAACATAAAAAGTAGAAGAA 57.334 30.769 0.00 0.00 0.00 2.52
1541 1619 7.929785 ACTCGACCAAACATAAAAAGTAGAAGA 59.070 33.333 0.00 0.00 0.00 2.87
1542 1620 8.084590 ACTCGACCAAACATAAAAAGTAGAAG 57.915 34.615 0.00 0.00 0.00 2.85
1543 1621 7.711772 TGACTCGACCAAACATAAAAAGTAGAA 59.288 33.333 0.00 0.00 0.00 2.10
1544 1622 7.170320 GTGACTCGACCAAACATAAAAAGTAGA 59.830 37.037 0.00 0.00 0.00 2.59
1545 1623 7.170998 AGTGACTCGACCAAACATAAAAAGTAG 59.829 37.037 0.00 0.00 0.00 2.57
1546 1624 6.987992 AGTGACTCGACCAAACATAAAAAGTA 59.012 34.615 0.00 0.00 0.00 2.24
1547 1625 5.820947 AGTGACTCGACCAAACATAAAAAGT 59.179 36.000 0.00 0.00 0.00 2.66
1548 1626 6.300354 AGTGACTCGACCAAACATAAAAAG 57.700 37.500 0.00 0.00 0.00 2.27
1549 1627 6.687081 AAGTGACTCGACCAAACATAAAAA 57.313 33.333 0.00 0.00 0.00 1.94
1550 1628 7.211573 TCTAAGTGACTCGACCAAACATAAAA 58.788 34.615 0.00 0.00 0.00 1.52
1551 1629 6.751157 TCTAAGTGACTCGACCAAACATAAA 58.249 36.000 0.00 0.00 0.00 1.40
1552 1630 6.335471 TCTAAGTGACTCGACCAAACATAA 57.665 37.500 0.00 0.00 0.00 1.90
1553 1631 5.970317 TCTAAGTGACTCGACCAAACATA 57.030 39.130 0.00 0.00 0.00 2.29
1554 1632 4.866508 TCTAAGTGACTCGACCAAACAT 57.133 40.909 0.00 0.00 0.00 2.71
1555 1633 4.038763 ACATCTAAGTGACTCGACCAAACA 59.961 41.667 0.00 0.00 0.00 2.83
1556 1634 4.386049 CACATCTAAGTGACTCGACCAAAC 59.614 45.833 0.00 0.00 42.05 2.93
1557 1635 4.279922 TCACATCTAAGTGACTCGACCAAA 59.720 41.667 0.00 0.00 43.18 3.28
1558 1636 3.824443 TCACATCTAAGTGACTCGACCAA 59.176 43.478 0.00 0.00 43.18 3.67
1559 1637 3.418047 TCACATCTAAGTGACTCGACCA 58.582 45.455 0.00 0.00 43.18 4.02
1567 1645 1.555075 GGGCCTGTCACATCTAAGTGA 59.445 52.381 0.84 0.00 45.64 3.41
1568 1646 1.278985 TGGGCCTGTCACATCTAAGTG 59.721 52.381 4.53 0.00 40.85 3.16
1569 1647 1.656587 TGGGCCTGTCACATCTAAGT 58.343 50.000 4.53 0.00 0.00 2.24
1570 1648 2.749621 GTTTGGGCCTGTCACATCTAAG 59.250 50.000 4.53 0.00 0.00 2.18
1571 1649 2.375174 AGTTTGGGCCTGTCACATCTAA 59.625 45.455 4.53 0.00 0.00 2.10
1572 1650 1.985159 AGTTTGGGCCTGTCACATCTA 59.015 47.619 4.53 0.00 0.00 1.98
1573 1651 0.773644 AGTTTGGGCCTGTCACATCT 59.226 50.000 4.53 0.00 0.00 2.90
1574 1652 1.620822 AAGTTTGGGCCTGTCACATC 58.379 50.000 4.53 0.00 0.00 3.06
1575 1653 2.890945 GTTAAGTTTGGGCCTGTCACAT 59.109 45.455 4.53 0.00 0.00 3.21
1576 1654 2.303175 GTTAAGTTTGGGCCTGTCACA 58.697 47.619 4.53 0.00 0.00 3.58
1577 1655 2.303175 TGTTAAGTTTGGGCCTGTCAC 58.697 47.619 4.53 0.00 0.00 3.67
1578 1656 2.738587 TGTTAAGTTTGGGCCTGTCA 57.261 45.000 4.53 0.00 0.00 3.58
1579 1657 5.185056 ACAATATGTTAAGTTTGGGCCTGTC 59.815 40.000 4.53 0.00 0.00 3.51
1580 1658 5.083821 ACAATATGTTAAGTTTGGGCCTGT 58.916 37.500 4.53 0.00 0.00 4.00
1581 1659 5.418840 AGACAATATGTTAAGTTTGGGCCTG 59.581 40.000 4.53 0.00 0.00 4.85
1582 1660 5.580022 AGACAATATGTTAAGTTTGGGCCT 58.420 37.500 4.53 0.00 0.00 5.19
1583 1661 5.914898 AGACAATATGTTAAGTTTGGGCC 57.085 39.130 0.00 0.00 0.00 5.80
1584 1662 7.338449 TCCTAAGACAATATGTTAAGTTTGGGC 59.662 37.037 0.00 0.00 0.00 5.36
1585 1663 8.801882 TCCTAAGACAATATGTTAAGTTTGGG 57.198 34.615 0.00 0.00 0.00 4.12
1604 1682 8.623903 TGCAACTTTGAATATAGCAATCCTAAG 58.376 33.333 0.00 0.00 0.00 2.18
1748 1828 3.826729 GCCAATTTATCCATACCCCTCAC 59.173 47.826 0.00 0.00 0.00 3.51
1771 1851 7.555965 AGGGAGAAATTACATAAATGCCAAAC 58.444 34.615 0.00 0.00 0.00 2.93
1785 1865 9.542462 CAAACGTATCTGATTAGGGAGAAATTA 57.458 33.333 0.00 0.00 0.00 1.40
1789 1869 6.153851 TGACAAACGTATCTGATTAGGGAGAA 59.846 38.462 0.00 0.00 0.00 2.87
1816 1896 3.448686 GCGCAGTCACTATCAGTACAAT 58.551 45.455 0.30 0.00 0.00 2.71
1827 1907 1.726791 CTAAATCAACGCGCAGTCACT 59.273 47.619 5.73 0.00 0.00 3.41
2025 2106 5.762045 TGCTTCTTTACTCAACAAATGCTC 58.238 37.500 0.00 0.00 0.00 4.26
2067 2148 3.622060 ATTTCAGCGACCCCACCCG 62.622 63.158 0.00 0.00 0.00 5.28
2194 2275 8.680903 AGGAGCAAAGAAAATAATCACTACATG 58.319 33.333 0.00 0.00 0.00 3.21
2195 2276 8.814038 AGGAGCAAAGAAAATAATCACTACAT 57.186 30.769 0.00 0.00 0.00 2.29
2197 2278 8.515414 ACAAGGAGCAAAGAAAATAATCACTAC 58.485 33.333 0.00 0.00 0.00 2.73
2201 2282 9.241919 TCATACAAGGAGCAAAGAAAATAATCA 57.758 29.630 0.00 0.00 0.00 2.57
2206 2287 8.125978 TCATTCATACAAGGAGCAAAGAAAAT 57.874 30.769 0.00 0.00 0.00 1.82
2213 2294 8.806429 TCTTAATTCATTCATACAAGGAGCAA 57.194 30.769 0.00 0.00 0.00 3.91
2234 2315 8.762645 AGGACATGATCAGACACTTAAATCTTA 58.237 33.333 0.00 0.00 0.00 2.10
2241 2322 8.762645 AGATAAAAGGACATGATCAGACACTTA 58.237 33.333 0.00 0.00 0.00 2.24
2325 2407 5.767665 TGCAGACTTTTCATGCTACCTTTAA 59.232 36.000 0.00 0.00 40.62 1.52
2515 2597 0.996583 AGGACCGAAATTAGGGGCAA 59.003 50.000 3.19 0.00 30.75 4.52
2580 2663 1.372501 TCCCCCTCTCCCTTTTCTTG 58.627 55.000 0.00 0.00 0.00 3.02
2652 2735 6.444633 ACAGAATCAACATGCAAGAAAAGAG 58.555 36.000 0.00 0.00 0.00 2.85
2688 2771 6.577427 GGAAACAAATGTTCATCGACACTAAC 59.423 38.462 0.00 0.00 37.25 2.34
2760 2843 4.097741 CCTGTTCCAACACAATGTCTCAAA 59.902 41.667 0.00 0.00 34.70 2.69
2765 2848 3.548014 CGAACCTGTTCCAACACAATGTC 60.548 47.826 4.54 0.00 36.27 3.06
2807 2890 3.498661 GGTTGAACTTCCTGATCCACCTT 60.499 47.826 0.00 0.00 32.73 3.50
2864 2947 2.133641 GTTGCCAACCTGCACCCTT 61.134 57.895 0.00 0.00 41.88 3.95
2913 2996 0.454600 GCACTGCAATCATGTCCAGG 59.545 55.000 0.00 0.00 0.00 4.45
2963 3049 4.121317 CAATTTTCAAGCACCTCTGCAAA 58.879 39.130 0.00 0.00 46.97 3.68
2966 3052 2.297033 TCCAATTTTCAAGCACCTCTGC 59.703 45.455 0.00 0.00 44.63 4.26
2968 3054 4.218312 ACTTCCAATTTTCAAGCACCTCT 58.782 39.130 0.00 0.00 0.00 3.69
3028 3114 4.022068 CCAAACTAGCAAGCATTCTGGAAA 60.022 41.667 0.00 0.00 0.00 3.13
3052 3138 7.642669 ACATGCAAAATTATCGATAACCAGAG 58.357 34.615 19.73 10.22 0.00 3.35
3266 3352 4.572795 GGTTAAGCAGCAGAATAGAAGGAC 59.427 45.833 0.00 0.00 0.00 3.85
3342 3430 5.230726 CACATTTTCAGAACAGTTCAGCAAC 59.769 40.000 15.85 0.00 0.00 4.17
3406 3494 8.506168 TGGGATACTGAATCAACATTAAGTTC 57.494 34.615 0.00 0.00 38.74 3.01
3456 3544 6.356556 TCCTGATACATATCCAAACTTGTGG 58.643 40.000 0.00 0.00 40.33 4.17
3521 3609 5.411361 CCAAACATCTGACGGACATTAGAAA 59.589 40.000 0.00 0.00 0.00 2.52
3767 3855 6.883217 ACTGCTTCAAGTGAGAATGTATGAAT 59.117 34.615 0.00 0.00 0.00 2.57
3769 3857 5.798132 ACTGCTTCAAGTGAGAATGTATGA 58.202 37.500 0.00 0.00 0.00 2.15
3824 3912 5.550290 TGACATTAGATCAGACAAACTGCA 58.450 37.500 0.00 0.00 45.38 4.41
3892 3980 0.251073 ACCACCGTTACATGTAGGGC 59.749 55.000 19.51 8.77 0.00 5.19
3981 4069 8.506168 TTTGGACATTTAGACAATGTAGGATC 57.494 34.615 0.22 0.00 40.62 3.36
3983 4071 8.106462 TGATTTGGACATTTAGACAATGTAGGA 58.894 33.333 0.22 0.00 40.62 2.94
4007 4095 3.181329 TCTAGGCCTCATTGACCTTTGA 58.819 45.455 9.68 0.00 34.92 2.69
4125 4214 8.925161 TTTCTGAAACTTTAGTTCATTTGGTG 57.075 30.769 0.00 0.00 37.25 4.17
4272 4364 8.339344 TCATTATAAAGCATGTGATACCCATG 57.661 34.615 0.00 0.00 42.06 3.66
4276 4368 7.819644 TGCATCATTATAAAGCATGTGATACC 58.180 34.615 0.00 0.00 0.00 2.73
4364 4461 1.544724 TTGAGGTACAAATGCTGGCC 58.455 50.000 0.00 0.00 35.39 5.36
4587 4704 4.760530 ACTTTAGCATCACTGGCAGATA 57.239 40.909 23.66 8.84 0.00 1.98
4631 4748 6.655078 AGCATCCACACAAACTTCTTTTAT 57.345 33.333 0.00 0.00 0.00 1.40
4645 4762 4.730966 TGGTTTTAGGTTTAGCATCCACA 58.269 39.130 0.00 0.00 0.00 4.17
4706 4823 7.335422 GCCTCACAGAAAGAAGAAATGAGATTA 59.665 37.037 0.00 0.00 35.22 1.75
4724 4841 2.462456 TAAGCTTCAGTGCCTCACAG 57.538 50.000 0.00 0.00 36.74 3.66
4920 5037 1.665442 GGCCTGCCAAACGACAATT 59.335 52.632 2.58 0.00 35.81 2.32
4996 5113 7.148171 GGCAACAAAAGCTTAGATGAGAATAGT 60.148 37.037 0.00 0.00 0.00 2.12
5084 5201 2.000048 ACCCTTTTGCCCTCCAGATTA 59.000 47.619 0.00 0.00 0.00 1.75
5197 5314 5.877012 CACAGCCTGTATGTATCTTGTCTTT 59.123 40.000 0.00 0.00 0.00 2.52
5198 5315 5.423015 CACAGCCTGTATGTATCTTGTCTT 58.577 41.667 0.00 0.00 0.00 3.01
5203 5320 3.535561 GTGCACAGCCTGTATGTATCTT 58.464 45.455 13.17 0.00 0.00 2.40
5263 5381 2.681273 AAATTTTGGCCCCCGTCCCA 62.681 55.000 0.00 0.00 0.00 4.37
5295 5413 4.584325 ACACTTTCAAATTTCCAGCAGCTA 59.416 37.500 0.00 0.00 0.00 3.32
5312 5430 3.136763 CAGATGACTCAGCACACACTTT 58.863 45.455 0.00 0.00 0.00 2.66
5524 5644 4.804420 AGATGCCGAGCTGGGGGA 62.804 66.667 17.33 7.00 38.63 4.81
5681 5803 6.969828 AGGTTTAGAACTCTATGCTTTTCG 57.030 37.500 0.00 0.00 0.00 3.46
5724 5847 5.072055 TCAACCATTTGCAGAAAGATGAGA 58.928 37.500 0.00 0.00 32.17 3.27
5725 5848 5.381174 TCAACCATTTGCAGAAAGATGAG 57.619 39.130 0.00 0.00 32.17 2.90
5742 5865 5.984926 TGAAAACATGCAAGAAGATTCAACC 59.015 36.000 0.00 0.00 0.00 3.77
5758 5881 3.544684 TCAGACAGCACAGTGAAAACAT 58.455 40.909 4.15 0.00 0.00 2.71
5801 5924 5.691305 CACAAACATGATTGGTTCGAAATGT 59.309 36.000 18.61 1.88 34.56 2.71
5811 5934 4.308265 TCACAATGCACAAACATGATTGG 58.692 39.130 18.61 9.51 34.56 3.16
5880 6003 8.977267 ATCCTCCAAAAATCAAACAAAATTCA 57.023 26.923 0.00 0.00 0.00 2.57
5943 6066 4.752101 CCTAAGGATTTCAGGCTACGAATG 59.248 45.833 0.00 0.00 0.00 2.67
5952 6075 6.010219 TGGAAAAACTCCTAAGGATTTCAGG 58.990 40.000 0.00 0.00 45.64 3.86
5953 6076 7.709149 ATGGAAAAACTCCTAAGGATTTCAG 57.291 36.000 0.00 0.00 45.64 3.02
6002 6126 4.494091 ACATAGAGGTTTGAGTGGATGG 57.506 45.455 0.00 0.00 0.00 3.51
6020 6144 8.667463 CACAAGAAAAACAAAGGAATTCAACAT 58.333 29.630 7.93 0.00 0.00 2.71
6042 6166 4.350368 TTGGAAGTGTCTGATAGCACAA 57.650 40.909 0.00 0.00 38.02 3.33
6053 6177 9.016438 TGTACCCTATAAAATTTTGGAAGTGTC 57.984 33.333 13.76 0.48 0.00 3.67
6095 6219 7.491048 GCAAGAATAAGAAAAACACAGGAACAA 59.509 33.333 0.00 0.00 0.00 2.83
6124 6248 7.414984 GCCTCTTTGATTCACAGGATTCTAAAG 60.415 40.741 8.94 0.00 31.64 1.85
6170 6294 2.345760 CGCTTTGCCTTCATGCCCT 61.346 57.895 0.00 0.00 0.00 5.19
6173 6297 1.143969 GCATCGCTTTGCCTTCATGC 61.144 55.000 0.00 0.00 36.60 4.06
6174 6298 2.953669 GCATCGCTTTGCCTTCATG 58.046 52.632 0.00 0.00 36.60 3.07
6254 6394 0.179062 GATCGCTCCAATGCAGTCCT 60.179 55.000 0.00 0.00 0.00 3.85
6308 6448 4.142049 CCTTTCACATACTCTCCAGTCTCC 60.142 50.000 0.00 0.00 33.62 3.71
6323 6463 3.826524 TCTGTACAAATGGCCTTTCACA 58.173 40.909 3.32 8.52 0.00 3.58
6366 6506 8.997621 TTATGTATTGAGTGGTCAGTAGTTTC 57.002 34.615 0.00 0.00 32.98 2.78
6429 6569 4.452733 GCGGTGGAACGGAGGGAG 62.453 72.222 0.00 0.00 39.89 4.30
6446 6586 3.275832 ATTTTGGGAAACGCGGGCG 62.276 57.895 12.47 12.04 46.03 6.13
6447 6587 1.445410 GATTTTGGGAAACGCGGGC 60.445 57.895 12.47 0.00 0.00 6.13
6448 6588 1.214325 GGATTTTGGGAAACGCGGG 59.786 57.895 12.47 0.00 0.00 6.13
6449 6589 0.315568 TTGGATTTTGGGAAACGCGG 59.684 50.000 12.47 0.00 0.00 6.46
6450 6590 1.000717 AGTTGGATTTTGGGAAACGCG 60.001 47.619 3.53 3.53 0.00 6.01
6451 6591 2.812358 AGTTGGATTTTGGGAAACGC 57.188 45.000 0.00 0.00 0.00 4.84
6452 6592 4.506288 GTCAAAGTTGGATTTTGGGAAACG 59.494 41.667 0.00 0.00 36.44 3.60
6453 6593 5.523552 CAGTCAAAGTTGGATTTTGGGAAAC 59.476 40.000 0.00 0.00 36.44 2.78
6454 6594 5.188751 ACAGTCAAAGTTGGATTTTGGGAAA 59.811 36.000 0.00 0.00 36.44 3.13
6455 6595 4.714308 ACAGTCAAAGTTGGATTTTGGGAA 59.286 37.500 0.00 0.00 36.44 3.97
6456 6596 4.285863 ACAGTCAAAGTTGGATTTTGGGA 58.714 39.130 0.00 0.00 36.44 4.37
6457 6597 4.670896 ACAGTCAAAGTTGGATTTTGGG 57.329 40.909 0.00 0.00 36.44 4.12
6458 6598 8.661352 AATTTACAGTCAAAGTTGGATTTTGG 57.339 30.769 0.00 0.00 36.44 3.28
6462 6602 9.758651 GGTTAAATTTACAGTCAAAGTTGGATT 57.241 29.630 0.00 0.00 29.44 3.01
6463 6603 8.919145 TGGTTAAATTTACAGTCAAAGTTGGAT 58.081 29.630 0.00 0.00 29.44 3.41
6464 6604 8.294954 TGGTTAAATTTACAGTCAAAGTTGGA 57.705 30.769 0.00 0.00 29.44 3.53
6465 6605 8.813282 GTTGGTTAAATTTACAGTCAAAGTTGG 58.187 33.333 0.00 0.00 29.44 3.77
6466 6606 8.528295 CGTTGGTTAAATTTACAGTCAAAGTTG 58.472 33.333 0.00 0.00 29.44 3.16
6467 6607 8.460428 TCGTTGGTTAAATTTACAGTCAAAGTT 58.540 29.630 0.00 0.00 31.36 2.66
6468 6608 7.987649 TCGTTGGTTAAATTTACAGTCAAAGT 58.012 30.769 0.00 0.00 0.00 2.66
6469 6609 8.339714 TCTCGTTGGTTAAATTTACAGTCAAAG 58.660 33.333 0.00 3.78 0.00 2.77
6470 6610 8.124199 GTCTCGTTGGTTAAATTTACAGTCAAA 58.876 33.333 0.00 0.00 0.00 2.69
6471 6611 7.254863 GGTCTCGTTGGTTAAATTTACAGTCAA 60.255 37.037 0.00 0.00 0.00 3.18
6472 6612 6.203338 GGTCTCGTTGGTTAAATTTACAGTCA 59.797 38.462 0.00 0.00 0.00 3.41
6473 6613 6.596703 GGTCTCGTTGGTTAAATTTACAGTC 58.403 40.000 0.00 0.00 0.00 3.51
6474 6614 5.178067 CGGTCTCGTTGGTTAAATTTACAGT 59.822 40.000 0.00 0.00 0.00 3.55
6475 6615 5.406175 TCGGTCTCGTTGGTTAAATTTACAG 59.594 40.000 0.00 0.00 37.69 2.74
6476 6616 5.295950 TCGGTCTCGTTGGTTAAATTTACA 58.704 37.500 0.00 0.00 37.69 2.41
6477 6617 5.844301 TCGGTCTCGTTGGTTAAATTTAC 57.156 39.130 0.00 0.00 37.69 2.01
6478 6618 6.427547 ACAATCGGTCTCGTTGGTTAAATTTA 59.572 34.615 0.00 0.00 37.69 1.40
6479 6619 5.239963 ACAATCGGTCTCGTTGGTTAAATTT 59.760 36.000 0.00 0.00 37.69 1.82
6480 6620 4.758165 ACAATCGGTCTCGTTGGTTAAATT 59.242 37.500 0.00 0.00 37.69 1.82
6481 6621 4.153475 CACAATCGGTCTCGTTGGTTAAAT 59.847 41.667 0.00 0.00 37.69 1.40
6482 6622 3.495377 CACAATCGGTCTCGTTGGTTAAA 59.505 43.478 0.00 0.00 37.69 1.52
6483 6623 3.061322 CACAATCGGTCTCGTTGGTTAA 58.939 45.455 0.00 0.00 37.69 2.01
6484 6624 2.610976 CCACAATCGGTCTCGTTGGTTA 60.611 50.000 0.00 0.00 37.69 2.85
6485 6625 1.508632 CACAATCGGTCTCGTTGGTT 58.491 50.000 0.00 0.00 37.69 3.67
6486 6626 0.320421 CCACAATCGGTCTCGTTGGT 60.320 55.000 0.00 0.00 37.69 3.67
6487 6627 1.635663 GCCACAATCGGTCTCGTTGG 61.636 60.000 0.00 0.00 37.69 3.77
6488 6628 1.787847 GCCACAATCGGTCTCGTTG 59.212 57.895 0.00 0.00 37.69 4.10
6489 6629 1.736645 CGCCACAATCGGTCTCGTT 60.737 57.895 0.00 0.00 37.69 3.85
6490 6630 2.126071 CGCCACAATCGGTCTCGT 60.126 61.111 0.00 0.00 37.69 4.18
6491 6631 1.874019 CTCGCCACAATCGGTCTCG 60.874 63.158 0.00 0.00 37.82 4.04
6492 6632 1.519455 CCTCGCCACAATCGGTCTC 60.519 63.158 0.00 0.00 0.00 3.36
6493 6633 1.982395 TCCTCGCCACAATCGGTCT 60.982 57.895 0.00 0.00 0.00 3.85
6494 6634 1.810030 GTCCTCGCCACAATCGGTC 60.810 63.158 0.00 0.00 0.00 4.79
6495 6635 2.107041 TTGTCCTCGCCACAATCGGT 62.107 55.000 0.00 0.00 0.00 4.69
6496 6636 0.953471 TTTGTCCTCGCCACAATCGG 60.953 55.000 0.00 0.00 33.76 4.18
6497 6637 0.871722 TTTTGTCCTCGCCACAATCG 59.128 50.000 0.00 0.00 33.76 3.34
6498 6638 3.057596 TCATTTTTGTCCTCGCCACAATC 60.058 43.478 0.00 0.00 33.76 2.67
6499 6639 2.890311 TCATTTTTGTCCTCGCCACAAT 59.110 40.909 0.00 0.00 33.76 2.71
6500 6640 2.302260 TCATTTTTGTCCTCGCCACAA 58.698 42.857 0.00 0.00 31.76 3.33
6501 6641 1.974265 TCATTTTTGTCCTCGCCACA 58.026 45.000 0.00 0.00 0.00 4.17
6502 6642 3.244976 CAATCATTTTTGTCCTCGCCAC 58.755 45.455 0.00 0.00 0.00 5.01
6503 6643 2.352617 GCAATCATTTTTGTCCTCGCCA 60.353 45.455 0.00 0.00 0.00 5.69
6504 6644 2.262211 GCAATCATTTTTGTCCTCGCC 58.738 47.619 0.00 0.00 0.00 5.54
6505 6645 1.913403 CGCAATCATTTTTGTCCTCGC 59.087 47.619 0.00 0.00 0.00 5.03
6506 6646 2.518949 CCGCAATCATTTTTGTCCTCG 58.481 47.619 0.00 0.00 0.00 4.63
6507 6647 2.262211 GCCGCAATCATTTTTGTCCTC 58.738 47.619 0.00 0.00 0.00 3.71
6508 6648 1.402720 CGCCGCAATCATTTTTGTCCT 60.403 47.619 0.00 0.00 0.00 3.85
6509 6649 0.991344 CGCCGCAATCATTTTTGTCC 59.009 50.000 0.00 0.00 0.00 4.02
6510 6650 0.991344 CCGCCGCAATCATTTTTGTC 59.009 50.000 0.00 0.00 0.00 3.18
6511 6651 3.120627 CCGCCGCAATCATTTTTGT 57.879 47.368 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.