Multiple sequence alignment - TraesCS4B01G317600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4B01G317600 | chr4B | 100.000 | 2715 | 0 | 0 | 1 | 2715 | 607287548 | 607290262 | 0.000000e+00 | 5014.0 |
1 | TraesCS4B01G317600 | chr4B | 87.037 | 324 | 22 | 6 | 2152 | 2469 | 583072514 | 583072823 | 5.560000e-92 | 348.0 |
2 | TraesCS4B01G317600 | chr4B | 89.759 | 166 | 17 | 0 | 1350 | 1515 | 607288798 | 607288963 | 2.120000e-51 | 213.0 |
3 | TraesCS4B01G317600 | chr4B | 89.759 | 166 | 17 | 0 | 1251 | 1416 | 607288897 | 607289062 | 2.120000e-51 | 213.0 |
4 | TraesCS4B01G317600 | chr4B | 93.798 | 129 | 8 | 0 | 1383 | 1511 | 607288798 | 607288926 | 7.670000e-46 | 195.0 |
5 | TraesCS4B01G317600 | chr4B | 93.798 | 129 | 8 | 0 | 1251 | 1379 | 607288930 | 607289058 | 7.670000e-46 | 195.0 |
6 | TraesCS4B01G317600 | chr4D | 87.199 | 1414 | 68 | 36 | 3 | 1379 | 479961897 | 479963234 | 0.000000e+00 | 1504.0 |
7 | TraesCS4B01G317600 | chr4D | 92.898 | 352 | 14 | 2 | 1383 | 1734 | 479963106 | 479963446 | 4.040000e-138 | 501.0 |
8 | TraesCS4B01G317600 | chr4D | 87.079 | 356 | 25 | 8 | 2201 | 2539 | 479963672 | 479964023 | 1.530000e-102 | 383.0 |
9 | TraesCS4B01G317600 | chr4D | 88.211 | 246 | 18 | 5 | 2152 | 2391 | 465951724 | 465951964 | 1.590000e-72 | 283.0 |
10 | TraesCS4B01G317600 | chr4D | 91.667 | 132 | 11 | 0 | 1322 | 1453 | 479963111 | 479963242 | 1.660000e-42 | 183.0 |
11 | TraesCS4B01G317600 | chr4D | 93.043 | 115 | 8 | 0 | 1482 | 1596 | 465910045 | 465910159 | 4.650000e-38 | 169.0 |
12 | TraesCS4B01G317600 | chr4D | 92.982 | 114 | 7 | 1 | 2565 | 2678 | 479966702 | 479966814 | 6.010000e-37 | 165.0 |
13 | TraesCS4B01G317600 | chr4D | 94.118 | 68 | 4 | 0 | 1454 | 1521 | 479963111 | 479963178 | 1.330000e-18 | 104.0 |
14 | TraesCS4B01G317600 | chr4D | 89.706 | 68 | 7 | 0 | 2142 | 2209 | 479963563 | 479963630 | 1.340000e-13 | 87.9 |
15 | TraesCS4B01G317600 | chr4D | 94.444 | 54 | 3 | 0 | 2416 | 2469 | 465951963 | 465952016 | 1.730000e-12 | 84.2 |
16 | TraesCS4B01G317600 | chr6B | 80.678 | 590 | 78 | 19 | 61 | 637 | 674935900 | 674935334 | 2.500000e-115 | 425.0 |
17 | TraesCS4B01G317600 | chr2B | 81.781 | 494 | 65 | 12 | 158 | 637 | 572586851 | 572586369 | 9.110000e-105 | 390.0 |
18 | TraesCS4B01G317600 | chr2B | 79.626 | 481 | 66 | 19 | 171 | 634 | 701490642 | 701491107 | 1.570000e-82 | 316.0 |
19 | TraesCS4B01G317600 | chr4A | 79.727 | 587 | 71 | 34 | 61 | 626 | 686385145 | 686385704 | 5.490000e-102 | 381.0 |
20 | TraesCS4B01G317600 | chr4A | 88.710 | 310 | 25 | 8 | 1030 | 1329 | 641601966 | 641601657 | 1.190000e-98 | 370.0 |
21 | TraesCS4B01G317600 | chr4A | 78.208 | 413 | 28 | 26 | 2323 | 2715 | 641600820 | 641600450 | 9.850000e-50 | 207.0 |
22 | TraesCS4B01G317600 | chr4A | 90.909 | 66 | 3 | 1 | 2201 | 2263 | 641600886 | 641600821 | 4.820000e-13 | 86.1 |
23 | TraesCS4B01G317600 | chr5B | 86.647 | 337 | 24 | 8 | 2365 | 2684 | 42744042 | 42744374 | 1.200000e-93 | 353.0 |
24 | TraesCS4B01G317600 | chr5B | 79.923 | 518 | 72 | 15 | 139 | 637 | 441446011 | 441446515 | 4.300000e-93 | 351.0 |
25 | TraesCS4B01G317600 | chr5B | 80.272 | 441 | 56 | 16 | 160 | 584 | 448803608 | 448804033 | 1.220000e-78 | 303.0 |
26 | TraesCS4B01G317600 | chr2D | 80.882 | 476 | 65 | 17 | 170 | 634 | 582494558 | 582495018 | 4.300000e-93 | 351.0 |
27 | TraesCS4B01G317600 | chr2D | 80.444 | 450 | 48 | 19 | 169 | 599 | 488229528 | 488229100 | 9.440000e-80 | 307.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4B01G317600 | chr4B | 607287548 | 607290262 | 2714 | False | 1166.000000 | 5014 | 93.422800 | 1 | 2715 | 5 | chr4B.!!$F2 | 2714 |
1 | TraesCS4B01G317600 | chr4D | 479961897 | 479966814 | 4917 | False | 418.271429 | 1504 | 90.807000 | 3 | 2678 | 7 | chr4D.!!$F3 | 2675 |
2 | TraesCS4B01G317600 | chr6B | 674935334 | 674935900 | 566 | True | 425.000000 | 425 | 80.678000 | 61 | 637 | 1 | chr6B.!!$R1 | 576 |
3 | TraesCS4B01G317600 | chr4A | 686385145 | 686385704 | 559 | False | 381.000000 | 381 | 79.727000 | 61 | 626 | 1 | chr4A.!!$F1 | 565 |
4 | TraesCS4B01G317600 | chr4A | 641600450 | 641601966 | 1516 | True | 221.033333 | 370 | 85.942333 | 1030 | 2715 | 3 | chr4A.!!$R1 | 1685 |
5 | TraesCS4B01G317600 | chr5B | 441446011 | 441446515 | 504 | False | 351.000000 | 351 | 79.923000 | 139 | 637 | 1 | chr5B.!!$F2 | 498 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
554 | 606 | 0.179086 | GGTTGTGTTGCTTTGGTGGG | 60.179 | 55.0 | 0.0 | 0.0 | 0.0 | 4.61 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2013 | 2127 | 0.036164 | AGCAATGCACGGTGGTAAGA | 59.964 | 50.0 | 8.35 | 0.0 | 0.0 | 2.1 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
44 | 45 | 6.620877 | TCCACAATATACAGTTCCTCAAGT | 57.379 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
45 | 46 | 7.016153 | TCCACAATATACAGTTCCTCAAGTT | 57.984 | 36.000 | 0.00 | 0.00 | 0.00 | 2.66 |
46 | 47 | 7.458397 | TCCACAATATACAGTTCCTCAAGTTT | 58.542 | 34.615 | 0.00 | 0.00 | 0.00 | 2.66 |
47 | 48 | 8.598916 | TCCACAATATACAGTTCCTCAAGTTTA | 58.401 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
48 | 49 | 9.226606 | CCACAATATACAGTTCCTCAAGTTTAA | 57.773 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
53 | 54 | 9.838339 | ATATACAGTTCCTCAAGTTTAATCCAG | 57.162 | 33.333 | 0.00 | 0.00 | 0.00 | 3.86 |
79 | 80 | 6.472486 | ACTTGAACATAATGACGACGATACAG | 59.528 | 38.462 | 0.00 | 0.00 | 0.00 | 2.74 |
117 | 122 | 8.631480 | ACTAAAAATAAGACCCAACCAACTAG | 57.369 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
142 | 147 | 9.604569 | AGTGATCCTCATAGAGTAGTAGTAGTA | 57.395 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
183 | 201 | 0.919981 | ATCTAGACGACGACGACGAC | 59.080 | 55.000 | 25.15 | 18.88 | 42.66 | 4.34 |
196 | 217 | 1.195448 | ACGACGACGACGATTTAGTGT | 59.805 | 47.619 | 25.15 | 0.00 | 42.66 | 3.55 |
366 | 393 | 1.301293 | GGTCCTTGGCCTTCTCCAG | 59.699 | 63.158 | 3.32 | 0.00 | 37.44 | 3.86 |
426 | 471 | 2.182030 | CGACTCCTTCTCCGGCAC | 59.818 | 66.667 | 0.00 | 0.00 | 0.00 | 5.01 |
427 | 472 | 2.579738 | GACTCCTTCTCCGGCACC | 59.420 | 66.667 | 0.00 | 0.00 | 0.00 | 5.01 |
428 | 473 | 3.358076 | GACTCCTTCTCCGGCACCG | 62.358 | 68.421 | 1.02 | 1.02 | 39.44 | 4.94 |
461 | 506 | 4.785453 | CCACCGGAGCCTCCTTGC | 62.785 | 72.222 | 9.46 | 0.00 | 33.30 | 4.01 |
499 | 544 | 3.820777 | AAGCTGAGATCGAAAACTTGC | 57.179 | 42.857 | 0.00 | 0.00 | 0.00 | 4.01 |
501 | 546 | 1.131315 | GCTGAGATCGAAAACTTGCCC | 59.869 | 52.381 | 0.00 | 0.00 | 0.00 | 5.36 |
554 | 606 | 0.179086 | GGTTGTGTTGCTTTGGTGGG | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
562 | 614 | 3.914713 | CTTTGGTGGGCAGGGGGT | 61.915 | 66.667 | 0.00 | 0.00 | 0.00 | 4.95 |
563 | 615 | 3.886550 | CTTTGGTGGGCAGGGGGTC | 62.887 | 68.421 | 0.00 | 0.00 | 0.00 | 4.46 |
596 | 649 | 2.237392 | CCTACTTATATGCAGGGGAGGC | 59.763 | 54.545 | 0.00 | 0.00 | 0.00 | 4.70 |
606 | 664 | 3.637273 | GGGGAGGCCGTGTCTTGT | 61.637 | 66.667 | 0.00 | 0.00 | 0.00 | 3.16 |
659 | 717 | 2.266279 | TGGACTTGGAGTAGGGGAAAG | 58.734 | 52.381 | 0.00 | 0.00 | 0.00 | 2.62 |
660 | 718 | 1.560146 | GGACTTGGAGTAGGGGAAAGG | 59.440 | 57.143 | 0.00 | 0.00 | 0.00 | 3.11 |
661 | 719 | 2.547990 | GACTTGGAGTAGGGGAAAGGA | 58.452 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
662 | 720 | 2.910977 | GACTTGGAGTAGGGGAAAGGAA | 59.089 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
663 | 721 | 3.329814 | GACTTGGAGTAGGGGAAAGGAAA | 59.670 | 47.826 | 0.00 | 0.00 | 0.00 | 3.13 |
664 | 722 | 3.330998 | ACTTGGAGTAGGGGAAAGGAAAG | 59.669 | 47.826 | 0.00 | 0.00 | 0.00 | 2.62 |
665 | 723 | 3.285290 | TGGAGTAGGGGAAAGGAAAGA | 57.715 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
666 | 724 | 3.604787 | TGGAGTAGGGGAAAGGAAAGAA | 58.395 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
667 | 725 | 3.329814 | TGGAGTAGGGGAAAGGAAAGAAC | 59.670 | 47.826 | 0.00 | 0.00 | 0.00 | 3.01 |
668 | 726 | 3.587951 | GGAGTAGGGGAAAGGAAAGAACT | 59.412 | 47.826 | 0.00 | 0.00 | 0.00 | 3.01 |
669 | 727 | 4.043059 | GGAGTAGGGGAAAGGAAAGAACTT | 59.957 | 45.833 | 0.00 | 0.00 | 0.00 | 2.66 |
670 | 728 | 4.986783 | AGTAGGGGAAAGGAAAGAACTTG | 58.013 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
671 | 729 | 3.244887 | AGGGGAAAGGAAAGAACTTGG | 57.755 | 47.619 | 0.00 | 0.00 | 0.00 | 3.61 |
672 | 730 | 2.789399 | AGGGGAAAGGAAAGAACTTGGA | 59.211 | 45.455 | 0.00 | 0.00 | 0.00 | 3.53 |
673 | 731 | 3.206639 | AGGGGAAAGGAAAGAACTTGGAA | 59.793 | 43.478 | 0.00 | 0.00 | 0.00 | 3.53 |
701 | 759 | 0.600255 | AAAGAGAGCGTCCCGTTGTG | 60.600 | 55.000 | 0.00 | 0.00 | 0.00 | 3.33 |
708 | 766 | 1.666872 | CGTCCCGTTGTGAACCTCC | 60.667 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
713 | 771 | 1.512926 | CCGTTGTGAACCTCCTCTTG | 58.487 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
714 | 772 | 1.512926 | CGTTGTGAACCTCCTCTTGG | 58.487 | 55.000 | 0.00 | 0.00 | 0.00 | 3.61 |
715 | 773 | 1.070134 | CGTTGTGAACCTCCTCTTGGA | 59.930 | 52.381 | 0.00 | 0.00 | 40.69 | 3.53 |
716 | 774 | 2.289694 | CGTTGTGAACCTCCTCTTGGAT | 60.290 | 50.000 | 0.00 | 0.00 | 42.29 | 3.41 |
717 | 775 | 3.056107 | CGTTGTGAACCTCCTCTTGGATA | 60.056 | 47.826 | 0.00 | 0.00 | 42.29 | 2.59 |
721 | 779 | 6.485830 | TGTGAACCTCCTCTTGGATAATAG | 57.514 | 41.667 | 0.00 | 0.00 | 42.29 | 1.73 |
761 | 819 | 4.345859 | AATTGACCACACGAGGAAGTAA | 57.654 | 40.909 | 0.00 | 0.00 | 0.00 | 2.24 |
767 | 825 | 3.118519 | ACCACACGAGGAAGTAACACTTT | 60.119 | 43.478 | 0.00 | 0.00 | 38.80 | 2.66 |
769 | 827 | 3.247648 | CACACGAGGAAGTAACACTTTGG | 59.752 | 47.826 | 0.00 | 0.00 | 38.80 | 3.28 |
770 | 828 | 3.133362 | ACACGAGGAAGTAACACTTTGGA | 59.867 | 43.478 | 0.00 | 0.00 | 38.80 | 3.53 |
771 | 829 | 3.741344 | CACGAGGAAGTAACACTTTGGAG | 59.259 | 47.826 | 0.00 | 0.00 | 38.80 | 3.86 |
772 | 830 | 3.387050 | ACGAGGAAGTAACACTTTGGAGT | 59.613 | 43.478 | 0.00 | 0.00 | 38.80 | 3.85 |
773 | 831 | 4.141779 | ACGAGGAAGTAACACTTTGGAGTT | 60.142 | 41.667 | 0.00 | 0.00 | 38.80 | 3.01 |
774 | 832 | 4.448060 | CGAGGAAGTAACACTTTGGAGTTC | 59.552 | 45.833 | 0.00 | 0.00 | 38.80 | 3.01 |
775 | 833 | 4.377897 | AGGAAGTAACACTTTGGAGTTCG | 58.622 | 43.478 | 0.00 | 0.00 | 38.80 | 3.95 |
776 | 834 | 3.497262 | GGAAGTAACACTTTGGAGTTCGG | 59.503 | 47.826 | 0.00 | 0.00 | 38.80 | 4.30 |
777 | 835 | 4.374399 | GAAGTAACACTTTGGAGTTCGGA | 58.626 | 43.478 | 0.00 | 0.00 | 38.80 | 4.55 |
778 | 836 | 4.618920 | AGTAACACTTTGGAGTTCGGAT | 57.381 | 40.909 | 0.00 | 0.00 | 32.54 | 4.18 |
779 | 837 | 4.566987 | AGTAACACTTTGGAGTTCGGATC | 58.433 | 43.478 | 0.00 | 0.00 | 32.54 | 3.36 |
780 | 838 | 3.485463 | AACACTTTGGAGTTCGGATCA | 57.515 | 42.857 | 0.00 | 0.00 | 32.54 | 2.92 |
781 | 839 | 3.045601 | ACACTTTGGAGTTCGGATCAG | 57.954 | 47.619 | 0.00 | 0.00 | 32.54 | 2.90 |
782 | 840 | 2.632996 | ACACTTTGGAGTTCGGATCAGA | 59.367 | 45.455 | 0.00 | 0.00 | 32.54 | 3.27 |
783 | 841 | 3.071023 | ACACTTTGGAGTTCGGATCAGAA | 59.929 | 43.478 | 4.00 | 4.00 | 32.54 | 3.02 |
784 | 842 | 3.681897 | CACTTTGGAGTTCGGATCAGAAG | 59.318 | 47.826 | 8.65 | 0.00 | 32.54 | 2.85 |
785 | 843 | 3.325135 | ACTTTGGAGTTCGGATCAGAAGT | 59.675 | 43.478 | 14.77 | 14.77 | 36.57 | 3.01 |
786 | 844 | 4.527038 | ACTTTGGAGTTCGGATCAGAAGTA | 59.473 | 41.667 | 14.82 | 0.00 | 34.24 | 2.24 |
787 | 845 | 4.720649 | TTGGAGTTCGGATCAGAAGTAG | 57.279 | 45.455 | 14.82 | 0.00 | 34.24 | 2.57 |
788 | 846 | 3.698289 | TGGAGTTCGGATCAGAAGTAGT | 58.302 | 45.455 | 14.82 | 0.00 | 34.24 | 2.73 |
789 | 847 | 4.851843 | TGGAGTTCGGATCAGAAGTAGTA | 58.148 | 43.478 | 14.82 | 3.52 | 34.24 | 1.82 |
790 | 848 | 5.258841 | TGGAGTTCGGATCAGAAGTAGTAA | 58.741 | 41.667 | 14.82 | 0.68 | 34.24 | 2.24 |
817 | 878 | 5.177696 | ACGAACTCTTTTCTTTTCTGATCGG | 59.822 | 40.000 | 0.00 | 0.00 | 0.00 | 4.18 |
826 | 887 | 7.928307 | TTTCTTTTCTGATCGGATGAAGATT | 57.072 | 32.000 | 21.97 | 0.00 | 0.00 | 2.40 |
831 | 892 | 9.270640 | CTTTTCTGATCGGATGAAGATTATCTT | 57.729 | 33.333 | 17.26 | 7.23 | 39.87 | 2.40 |
835 | 897 | 8.690884 | TCTGATCGGATGAAGATTATCTTATCC | 58.309 | 37.037 | 20.81 | 20.81 | 36.73 | 2.59 |
849 | 911 | 2.039216 | TCTTATCCCAAGTGCAAACGGA | 59.961 | 45.455 | 0.00 | 0.00 | 0.00 | 4.69 |
869 | 932 | 2.757917 | GGGAGCTGCTCGTCCTCT | 60.758 | 66.667 | 22.25 | 0.00 | 32.90 | 3.69 |
971 | 1049 | 2.111669 | CCGCAGCAGCCATATCCA | 59.888 | 61.111 | 0.00 | 0.00 | 37.52 | 3.41 |
974 | 1052 | 0.887836 | CGCAGCAGCCATATCCACAT | 60.888 | 55.000 | 0.00 | 0.00 | 37.52 | 3.21 |
984 | 1062 | 3.616076 | GCCATATCCACATCTCTTCTCGG | 60.616 | 52.174 | 0.00 | 0.00 | 0.00 | 4.63 |
1000 | 1078 | 0.959553 | TCGGTCGATTCCCTAGCATC | 59.040 | 55.000 | 0.00 | 0.00 | 0.00 | 3.91 |
1001 | 1079 | 0.038159 | CGGTCGATTCCCTAGCATCC | 60.038 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1002 | 1080 | 1.343069 | GGTCGATTCCCTAGCATCCT | 58.657 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 |
1003 | 1081 | 1.694696 | GGTCGATTCCCTAGCATCCTT | 59.305 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
1004 | 1082 | 2.104963 | GGTCGATTCCCTAGCATCCTTT | 59.895 | 50.000 | 0.00 | 0.00 | 0.00 | 3.11 |
1005 | 1083 | 3.433740 | GGTCGATTCCCTAGCATCCTTTT | 60.434 | 47.826 | 0.00 | 0.00 | 0.00 | 2.27 |
1006 | 1084 | 4.200092 | GTCGATTCCCTAGCATCCTTTTT | 58.800 | 43.478 | 0.00 | 0.00 | 0.00 | 1.94 |
1281 | 1370 | 4.111016 | CTGCCGGCGAGTACACGA | 62.111 | 66.667 | 23.90 | 0.00 | 35.09 | 4.35 |
1282 | 1371 | 4.409218 | TGCCGGCGAGTACACGAC | 62.409 | 66.667 | 23.90 | 13.03 | 38.00 | 4.34 |
1286 | 1375 | 2.576317 | GGCGAGTACACGACGAGC | 60.576 | 66.667 | 17.12 | 0.00 | 35.47 | 5.03 |
1287 | 1376 | 2.175078 | GCGAGTACACGACGAGCA | 59.825 | 61.111 | 17.12 | 0.00 | 36.01 | 4.26 |
1288 | 1377 | 1.441515 | GCGAGTACACGACGAGCAA | 60.442 | 57.895 | 17.12 | 0.00 | 36.01 | 3.91 |
1289 | 1378 | 1.396543 | GCGAGTACACGACGAGCAAG | 61.397 | 60.000 | 17.12 | 0.00 | 36.01 | 4.01 |
1290 | 1379 | 0.793478 | CGAGTACACGACGAGCAAGG | 60.793 | 60.000 | 6.90 | 0.00 | 35.09 | 3.61 |
1291 | 1380 | 1.071567 | GAGTACACGACGAGCAAGGC | 61.072 | 60.000 | 0.00 | 0.00 | 0.00 | 4.35 |
1292 | 1381 | 2.092882 | GTACACGACGAGCAAGGCC | 61.093 | 63.158 | 0.00 | 0.00 | 0.00 | 5.19 |
1293 | 1382 | 3.291101 | TACACGACGAGCAAGGCCC | 62.291 | 63.158 | 0.00 | 0.00 | 0.00 | 5.80 |
1294 | 1383 | 4.680237 | CACGACGAGCAAGGCCCA | 62.680 | 66.667 | 0.00 | 0.00 | 0.00 | 5.36 |
1295 | 1384 | 4.681978 | ACGACGAGCAAGGCCCAC | 62.682 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
1314 | 1403 | 3.740397 | CGGCCGGTGAGTACACGA | 61.740 | 66.667 | 20.10 | 0.00 | 46.77 | 4.35 |
1315 | 1404 | 2.126189 | GGCCGGTGAGTACACGAC | 60.126 | 66.667 | 1.90 | 0.00 | 46.77 | 4.34 |
1316 | 1405 | 2.503375 | GCCGGTGAGTACACGACG | 60.503 | 66.667 | 1.90 | 0.00 | 46.77 | 5.12 |
1317 | 1406 | 2.503375 | CCGGTGAGTACACGACGC | 60.503 | 66.667 | 0.00 | 0.00 | 46.77 | 5.19 |
1318 | 1407 | 2.559840 | CGGTGAGTACACGACGCT | 59.440 | 61.111 | 0.00 | 0.00 | 46.77 | 5.07 |
1319 | 1408 | 1.511464 | CGGTGAGTACACGACGCTC | 60.511 | 63.158 | 0.00 | 0.00 | 46.77 | 5.03 |
1320 | 1409 | 1.577922 | GGTGAGTACACGACGCTCA | 59.422 | 57.895 | 0.00 | 0.00 | 46.77 | 4.26 |
1321 | 1410 | 0.039798 | GGTGAGTACACGACGCTCAA | 60.040 | 55.000 | 4.75 | 0.00 | 46.77 | 3.02 |
1322 | 1411 | 1.328439 | GTGAGTACACGACGCTCAAG | 58.672 | 55.000 | 4.75 | 0.00 | 40.40 | 3.02 |
1323 | 1412 | 0.240145 | TGAGTACACGACGCTCAAGG | 59.760 | 55.000 | 0.00 | 0.00 | 36.46 | 3.61 |
1324 | 1413 | 1.071567 | GAGTACACGACGCTCAAGGC | 61.072 | 60.000 | 0.00 | 0.00 | 37.64 | 4.35 |
1325 | 1414 | 2.092882 | GTACACGACGCTCAAGGCC | 61.093 | 63.158 | 0.00 | 0.00 | 37.74 | 5.19 |
1326 | 1415 | 3.291101 | TACACGACGCTCAAGGCCC | 62.291 | 63.158 | 0.00 | 0.00 | 37.74 | 5.80 |
1383 | 1472 | 4.111016 | CCGGCGAGTACACTGCGA | 62.111 | 66.667 | 9.30 | 0.00 | 0.00 | 5.10 |
1384 | 1473 | 2.577112 | CGGCGAGTACACTGCGAG | 60.577 | 66.667 | 0.00 | 0.00 | 0.00 | 5.03 |
1385 | 1474 | 2.881352 | GGCGAGTACACTGCGAGC | 60.881 | 66.667 | 0.00 | 0.00 | 0.00 | 5.03 |
1386 | 1475 | 2.126463 | GCGAGTACACTGCGAGCA | 60.126 | 61.111 | 0.00 | 0.00 | 0.00 | 4.26 |
1387 | 1476 | 1.733041 | GCGAGTACACTGCGAGCAA | 60.733 | 57.895 | 0.00 | 0.00 | 0.00 | 3.91 |
1388 | 1477 | 1.678269 | GCGAGTACACTGCGAGCAAG | 61.678 | 60.000 | 0.00 | 0.00 | 0.00 | 4.01 |
1389 | 1478 | 1.073216 | CGAGTACACTGCGAGCAAGG | 61.073 | 60.000 | 0.00 | 0.00 | 0.00 | 3.61 |
1390 | 1479 | 1.355066 | GAGTACACTGCGAGCAAGGC | 61.355 | 60.000 | 0.00 | 0.00 | 0.00 | 4.35 |
1391 | 1480 | 2.047274 | TACACTGCGAGCAAGGCC | 60.047 | 61.111 | 0.00 | 0.00 | 0.00 | 5.19 |
1392 | 1481 | 3.605749 | TACACTGCGAGCAAGGCCC | 62.606 | 63.158 | 0.00 | 0.00 | 0.00 | 5.80 |
1418 | 1507 | 2.202401 | GGCGAGTACACGACGACC | 60.202 | 66.667 | 17.12 | 4.19 | 35.09 | 4.79 |
1419 | 1508 | 2.557805 | GCGAGTACACGACGACCA | 59.442 | 61.111 | 17.12 | 0.00 | 35.09 | 4.02 |
1420 | 1509 | 1.081906 | GCGAGTACACGACGACCAA | 60.082 | 57.895 | 17.12 | 0.00 | 35.09 | 3.67 |
1421 | 1510 | 1.063951 | GCGAGTACACGACGACCAAG | 61.064 | 60.000 | 17.12 | 0.00 | 35.09 | 3.61 |
1422 | 1511 | 0.453950 | CGAGTACACGACGACCAAGG | 60.454 | 60.000 | 6.90 | 0.00 | 35.09 | 3.61 |
1423 | 1512 | 0.731855 | GAGTACACGACGACCAAGGC | 60.732 | 60.000 | 0.00 | 0.00 | 0.00 | 4.35 |
1424 | 1513 | 1.735559 | GTACACGACGACCAAGGCC | 60.736 | 63.158 | 0.00 | 0.00 | 0.00 | 5.19 |
1425 | 1514 | 2.934570 | TACACGACGACCAAGGCCC | 61.935 | 63.158 | 0.00 | 0.00 | 0.00 | 5.80 |
1453 | 1542 | 1.582968 | GGGAGTACACGACGCTCAA | 59.417 | 57.895 | 0.00 | 0.00 | 0.00 | 3.02 |
1459 | 1548 | 4.379243 | CACGACGCTCAAGGCCCT | 62.379 | 66.667 | 0.00 | 0.00 | 37.74 | 5.19 |
1523 | 1612 | 1.511464 | GTACACGACGCTCAGGACG | 60.511 | 63.158 | 0.00 | 0.00 | 0.00 | 4.79 |
1628 | 1720 | 3.133542 | TGATGAGATGCCAGTAGGTTGAG | 59.866 | 47.826 | 0.00 | 0.00 | 37.19 | 3.02 |
1629 | 1721 | 1.833630 | TGAGATGCCAGTAGGTTGAGG | 59.166 | 52.381 | 0.00 | 0.00 | 37.19 | 3.86 |
1630 | 1722 | 2.111384 | GAGATGCCAGTAGGTTGAGGA | 58.889 | 52.381 | 0.00 | 0.00 | 37.19 | 3.71 |
1631 | 1723 | 1.834263 | AGATGCCAGTAGGTTGAGGAC | 59.166 | 52.381 | 0.00 | 0.00 | 37.19 | 3.85 |
1632 | 1724 | 1.834263 | GATGCCAGTAGGTTGAGGACT | 59.166 | 52.381 | 0.00 | 0.00 | 37.19 | 3.85 |
1633 | 1725 | 1.729586 | TGCCAGTAGGTTGAGGACTT | 58.270 | 50.000 | 0.00 | 0.00 | 37.19 | 3.01 |
1634 | 1726 | 1.347707 | TGCCAGTAGGTTGAGGACTTG | 59.652 | 52.381 | 0.00 | 0.00 | 37.19 | 3.16 |
1635 | 1727 | 1.623811 | GCCAGTAGGTTGAGGACTTGA | 59.376 | 52.381 | 0.00 | 0.00 | 37.19 | 3.02 |
1657 | 1749 | 4.215109 | AGGCTTTGTTGGTTACTGAATGT | 58.785 | 39.130 | 0.00 | 0.00 | 0.00 | 2.71 |
1676 | 1768 | 8.437360 | TGAATGTTTCTGTCGCTGATAATTAT | 57.563 | 30.769 | 0.00 | 0.00 | 0.00 | 1.28 |
1741 | 1834 | 4.142687 | GGCACAATATTGTCGCAGTTAGTT | 60.143 | 41.667 | 28.27 | 3.99 | 39.91 | 2.24 |
1747 | 1840 | 6.985188 | ATATTGTCGCAGTTAGTTGATGTT | 57.015 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
1750 | 1843 | 3.493129 | TGTCGCAGTTAGTTGATGTTGAC | 59.507 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
1751 | 1844 | 3.741344 | GTCGCAGTTAGTTGATGTTGACT | 59.259 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
1752 | 1845 | 4.921515 | GTCGCAGTTAGTTGATGTTGACTA | 59.078 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
1753 | 1846 | 4.921515 | TCGCAGTTAGTTGATGTTGACTAC | 59.078 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
1754 | 1847 | 4.923871 | CGCAGTTAGTTGATGTTGACTACT | 59.076 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
1755 | 1848 | 5.164051 | CGCAGTTAGTTGATGTTGACTACTG | 60.164 | 44.000 | 0.00 | 0.00 | 34.41 | 2.74 |
1756 | 1849 | 5.926542 | GCAGTTAGTTGATGTTGACTACTGA | 59.073 | 40.000 | 0.00 | 0.00 | 33.85 | 3.41 |
1757 | 1850 | 6.423905 | GCAGTTAGTTGATGTTGACTACTGAA | 59.576 | 38.462 | 0.00 | 0.00 | 33.85 | 3.02 |
1758 | 1851 | 7.359598 | GCAGTTAGTTGATGTTGACTACTGAAG | 60.360 | 40.741 | 0.00 | 0.00 | 33.85 | 3.02 |
1759 | 1852 | 7.653713 | CAGTTAGTTGATGTTGACTACTGAAGT | 59.346 | 37.037 | 0.00 | 0.00 | 42.80 | 3.01 |
1760 | 1853 | 8.204836 | AGTTAGTTGATGTTGACTACTGAAGTT | 58.795 | 33.333 | 0.00 | 0.00 | 39.07 | 2.66 |
1761 | 1854 | 8.488764 | GTTAGTTGATGTTGACTACTGAAGTTC | 58.511 | 37.037 | 0.00 | 0.00 | 39.07 | 3.01 |
1762 | 1855 | 6.582636 | AGTTGATGTTGACTACTGAAGTTCA | 58.417 | 36.000 | 5.25 | 5.25 | 39.07 | 3.18 |
1763 | 1856 | 7.220030 | AGTTGATGTTGACTACTGAAGTTCAT | 58.780 | 34.615 | 5.91 | 0.00 | 39.07 | 2.57 |
1764 | 1857 | 8.367911 | AGTTGATGTTGACTACTGAAGTTCATA | 58.632 | 33.333 | 5.91 | 1.03 | 39.07 | 2.15 |
1765 | 1858 | 9.155975 | GTTGATGTTGACTACTGAAGTTCATAT | 57.844 | 33.333 | 5.91 | 0.47 | 39.07 | 1.78 |
1863 | 1963 | 2.655090 | TGCATTGGACCTTCAACTCA | 57.345 | 45.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1891 | 2005 | 4.082625 | CCACATCTTACAACACATGCATGT | 60.083 | 41.667 | 26.61 | 26.61 | 42.84 | 3.21 |
1902 | 2016 | 4.334552 | ACACATGCATGTAACCTGATTCA | 58.665 | 39.130 | 30.92 | 0.00 | 39.39 | 2.57 |
1905 | 2019 | 6.071221 | ACACATGCATGTAACCTGATTCATTT | 60.071 | 34.615 | 30.92 | 0.51 | 39.39 | 2.32 |
1909 | 2023 | 8.573885 | CATGCATGTAACCTGATTCATTTATCT | 58.426 | 33.333 | 18.91 | 0.00 | 0.00 | 1.98 |
1910 | 2024 | 9.797642 | ATGCATGTAACCTGATTCATTTATCTA | 57.202 | 29.630 | 0.00 | 0.00 | 0.00 | 1.98 |
1911 | 2025 | 9.276590 | TGCATGTAACCTGATTCATTTATCTAG | 57.723 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
1912 | 2026 | 9.277783 | GCATGTAACCTGATTCATTTATCTAGT | 57.722 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
1919 | 2033 | 9.554053 | ACCTGATTCATTTATCTAGTATAGCCT | 57.446 | 33.333 | 0.00 | 0.00 | 38.99 | 4.58 |
1921 | 2035 | 9.729023 | CTGATTCATTTATCTAGTATAGCCTCG | 57.271 | 37.037 | 0.00 | 0.00 | 38.99 | 4.63 |
1922 | 2036 | 9.244292 | TGATTCATTTATCTAGTATAGCCTCGT | 57.756 | 33.333 | 0.00 | 0.00 | 38.99 | 4.18 |
1941 | 2055 | 2.203480 | TTTTTGCGCCCTGGAGCT | 60.203 | 55.556 | 13.11 | 0.00 | 41.45 | 4.09 |
1950 | 2064 | 2.362369 | CCCTGGAGCTGGACGACAT | 61.362 | 63.158 | 0.00 | 0.00 | 0.00 | 3.06 |
1955 | 2069 | 0.037326 | GGAGCTGGACGACATCAACA | 60.037 | 55.000 | 0.00 | 0.00 | 0.00 | 3.33 |
1958 | 2072 | 3.521995 | CTGGACGACATCAACAGCT | 57.478 | 52.632 | 0.00 | 0.00 | 0.00 | 4.24 |
1965 | 2079 | 5.163457 | TGGACGACATCAACAGCTTGATATA | 60.163 | 40.000 | 0.56 | 0.00 | 44.04 | 0.86 |
1967 | 2081 | 6.128715 | GGACGACATCAACAGCTTGATATATG | 60.129 | 42.308 | 0.56 | 0.00 | 44.04 | 1.78 |
1993 | 2107 | 7.850935 | ATTCATAATCTTTGCCCTCAATCAT | 57.149 | 32.000 | 0.00 | 0.00 | 31.33 | 2.45 |
1994 | 2108 | 7.664552 | TTCATAATCTTTGCCCTCAATCATT | 57.335 | 32.000 | 0.00 | 0.00 | 31.33 | 2.57 |
1995 | 2109 | 7.281040 | TCATAATCTTTGCCCTCAATCATTC | 57.719 | 36.000 | 0.00 | 0.00 | 31.33 | 2.67 |
1996 | 2110 | 6.266103 | TCATAATCTTTGCCCTCAATCATTCC | 59.734 | 38.462 | 0.00 | 0.00 | 31.33 | 3.01 |
1997 | 2111 | 2.368439 | TCTTTGCCCTCAATCATTCCG | 58.632 | 47.619 | 0.00 | 0.00 | 31.33 | 4.30 |
1998 | 2112 | 1.406539 | CTTTGCCCTCAATCATTCCGG | 59.593 | 52.381 | 0.00 | 0.00 | 31.33 | 5.14 |
1999 | 2113 | 0.623194 | TTGCCCTCAATCATTCCGGA | 59.377 | 50.000 | 0.00 | 0.00 | 0.00 | 5.14 |
2000 | 2114 | 0.107214 | TGCCCTCAATCATTCCGGAC | 60.107 | 55.000 | 1.83 | 0.00 | 0.00 | 4.79 |
2001 | 2115 | 0.107214 | GCCCTCAATCATTCCGGACA | 60.107 | 55.000 | 1.83 | 0.00 | 0.00 | 4.02 |
2002 | 2116 | 1.681780 | GCCCTCAATCATTCCGGACAA | 60.682 | 52.381 | 1.83 | 0.00 | 0.00 | 3.18 |
2003 | 2117 | 2.936202 | CCCTCAATCATTCCGGACAAT | 58.064 | 47.619 | 1.83 | 0.00 | 0.00 | 2.71 |
2013 | 2127 | 0.035152 | TCCGGACAATGCTTGCATCT | 60.035 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2014 | 2128 | 0.379669 | CCGGACAATGCTTGCATCTC | 59.620 | 55.000 | 8.64 | 6.62 | 0.00 | 2.75 |
2016 | 2130 | 1.741706 | CGGACAATGCTTGCATCTCTT | 59.258 | 47.619 | 8.64 | 0.00 | 0.00 | 2.85 |
2019 | 2133 | 3.065925 | GGACAATGCTTGCATCTCTTACC | 59.934 | 47.826 | 8.64 | 4.14 | 0.00 | 2.85 |
2020 | 2134 | 3.689347 | ACAATGCTTGCATCTCTTACCA | 58.311 | 40.909 | 8.64 | 0.00 | 0.00 | 3.25 |
2021 | 2135 | 3.441572 | ACAATGCTTGCATCTCTTACCAC | 59.558 | 43.478 | 8.64 | 0.00 | 0.00 | 4.16 |
2022 | 2136 | 2.113860 | TGCTTGCATCTCTTACCACC | 57.886 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
2023 | 2137 | 1.009829 | GCTTGCATCTCTTACCACCG | 58.990 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
2024 | 2138 | 1.676014 | GCTTGCATCTCTTACCACCGT | 60.676 | 52.381 | 0.00 | 0.00 | 0.00 | 4.83 |
2025 | 2139 | 2.002586 | CTTGCATCTCTTACCACCGTG | 58.997 | 52.381 | 0.00 | 0.00 | 0.00 | 4.94 |
2026 | 2140 | 0.391130 | TGCATCTCTTACCACCGTGC | 60.391 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 |
2027 | 2141 | 0.391130 | GCATCTCTTACCACCGTGCA | 60.391 | 55.000 | 0.00 | 0.00 | 0.00 | 4.57 |
2029 | 2143 | 2.632377 | CATCTCTTACCACCGTGCATT | 58.368 | 47.619 | 0.00 | 0.00 | 0.00 | 3.56 |
2030 | 2144 | 2.093306 | TCTCTTACCACCGTGCATTG | 57.907 | 50.000 | 0.00 | 0.00 | 0.00 | 2.82 |
2031 | 2145 | 0.447801 | CTCTTACCACCGTGCATTGC | 59.552 | 55.000 | 0.46 | 0.46 | 0.00 | 3.56 |
2034 | 2226 | 0.958382 | TTACCACCGTGCATTGCTCC | 60.958 | 55.000 | 10.49 | 0.00 | 0.00 | 4.70 |
2036 | 2228 | 3.803082 | CACCGTGCATTGCTCCGG | 61.803 | 66.667 | 27.39 | 27.39 | 44.58 | 5.14 |
2039 | 2231 | 2.331893 | CCGTGCATTGCTCCGGAAA | 61.332 | 57.895 | 26.02 | 0.00 | 42.84 | 3.13 |
2041 | 2233 | 0.171007 | CGTGCATTGCTCCGGAAAAT | 59.829 | 50.000 | 5.23 | 5.87 | 0.00 | 1.82 |
2046 | 2238 | 3.761218 | TGCATTGCTCCGGAAAATTCTAA | 59.239 | 39.130 | 5.23 | 0.00 | 0.00 | 2.10 |
2047 | 2239 | 4.142403 | TGCATTGCTCCGGAAAATTCTAAG | 60.142 | 41.667 | 5.23 | 0.00 | 0.00 | 2.18 |
2049 | 2241 | 5.573146 | CATTGCTCCGGAAAATTCTAAGTC | 58.427 | 41.667 | 5.23 | 0.00 | 0.00 | 3.01 |
2050 | 2242 | 4.553330 | TGCTCCGGAAAATTCTAAGTCT | 57.447 | 40.909 | 5.23 | 0.00 | 0.00 | 3.24 |
2052 | 2244 | 5.661458 | TGCTCCGGAAAATTCTAAGTCTAG | 58.339 | 41.667 | 5.23 | 0.00 | 0.00 | 2.43 |
2054 | 2246 | 5.980715 | GCTCCGGAAAATTCTAAGTCTAGAG | 59.019 | 44.000 | 5.23 | 0.00 | 35.55 | 2.43 |
2056 | 2248 | 5.956563 | TCCGGAAAATTCTAAGTCTAGAGGT | 59.043 | 40.000 | 0.00 | 0.00 | 35.55 | 3.85 |
2057 | 2249 | 6.439692 | TCCGGAAAATTCTAAGTCTAGAGGTT | 59.560 | 38.462 | 0.00 | 0.00 | 35.55 | 3.50 |
2058 | 2250 | 6.757478 | CCGGAAAATTCTAAGTCTAGAGGTTC | 59.243 | 42.308 | 0.00 | 0.00 | 35.55 | 3.62 |
2067 | 2259 | 7.640313 | TCTAAGTCTAGAGGTTCCTACATGAA | 58.360 | 38.462 | 0.00 | 0.00 | 30.34 | 2.57 |
2069 | 2261 | 6.783708 | AGTCTAGAGGTTCCTACATGAAAG | 57.216 | 41.667 | 0.00 | 0.00 | 0.00 | 2.62 |
2070 | 2262 | 5.128008 | AGTCTAGAGGTTCCTACATGAAAGC | 59.872 | 44.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2071 | 2263 | 5.023452 | TCTAGAGGTTCCTACATGAAAGCA | 58.977 | 41.667 | 0.00 | 0.00 | 0.00 | 3.91 |
2072 | 2264 | 4.213564 | AGAGGTTCCTACATGAAAGCAG | 57.786 | 45.455 | 0.00 | 0.00 | 0.00 | 4.24 |
2073 | 2265 | 2.680339 | GAGGTTCCTACATGAAAGCAGC | 59.320 | 50.000 | 0.00 | 0.00 | 0.00 | 5.25 |
2111 | 2303 | 6.259550 | AGAATCAGTTTTCCTTGTATGCAC | 57.740 | 37.500 | 0.00 | 0.00 | 0.00 | 4.57 |
2156 | 2400 | 7.333423 | GCTTGTACTGTTGTAATCTGGATAACA | 59.667 | 37.037 | 0.00 | 0.00 | 0.00 | 2.41 |
2157 | 2401 | 9.214957 | CTTGTACTGTTGTAATCTGGATAACAA | 57.785 | 33.333 | 0.00 | 0.00 | 31.67 | 2.83 |
2164 | 2408 | 8.530311 | TGTTGTAATCTGGATAACAAAATGCAT | 58.470 | 29.630 | 0.00 | 0.00 | 33.92 | 3.96 |
2166 | 2410 | 7.416817 | TGTAATCTGGATAACAAAATGCATCG | 58.583 | 34.615 | 0.00 | 0.00 | 0.00 | 3.84 |
2171 | 2415 | 7.995289 | TCTGGATAACAAAATGCATCGTTATT | 58.005 | 30.769 | 20.97 | 9.84 | 35.30 | 1.40 |
2209 | 2453 | 5.253330 | ACACCGTGAATTCCAGTTATCATT | 58.747 | 37.500 | 5.28 | 0.00 | 0.00 | 2.57 |
2211 | 2455 | 6.538742 | ACACCGTGAATTCCAGTTATCATTAG | 59.461 | 38.462 | 5.28 | 0.00 | 0.00 | 1.73 |
2213 | 2457 | 6.055588 | CCGTGAATTCCAGTTATCATTAGGT | 58.944 | 40.000 | 2.27 | 0.00 | 0.00 | 3.08 |
2215 | 2459 | 6.511767 | CGTGAATTCCAGTTATCATTAGGTGC | 60.512 | 42.308 | 2.27 | 0.00 | 0.00 | 5.01 |
2218 | 2462 | 4.835284 | TCCAGTTATCATTAGGTGCACA | 57.165 | 40.909 | 20.43 | 0.00 | 0.00 | 4.57 |
2220 | 2464 | 3.309682 | CCAGTTATCATTAGGTGCACACG | 59.690 | 47.826 | 20.43 | 1.43 | 0.00 | 4.49 |
2221 | 2465 | 4.180817 | CAGTTATCATTAGGTGCACACGA | 58.819 | 43.478 | 20.43 | 7.25 | 0.00 | 4.35 |
2297 | 2635 | 3.006112 | TGGCCTTTGCGGTCATAATAA | 57.994 | 42.857 | 3.32 | 0.00 | 44.09 | 1.40 |
2298 | 2636 | 3.561143 | TGGCCTTTGCGGTCATAATAAT | 58.439 | 40.909 | 3.32 | 0.00 | 44.09 | 1.28 |
2299 | 2637 | 4.720046 | TGGCCTTTGCGGTCATAATAATA | 58.280 | 39.130 | 3.32 | 0.00 | 44.09 | 0.98 |
2300 | 2638 | 5.321102 | TGGCCTTTGCGGTCATAATAATAT | 58.679 | 37.500 | 3.32 | 0.00 | 44.09 | 1.28 |
2339 | 2677 | 1.001815 | CTCGCAAAACCGATGTTTGGT | 60.002 | 47.619 | 7.30 | 0.00 | 43.80 | 3.67 |
2352 | 2690 | 6.887545 | ACCGATGTTTGGTCTTTTATAATGGA | 59.112 | 34.615 | 0.00 | 0.00 | 33.35 | 3.41 |
2363 | 2701 | 9.918630 | GGTCTTTTATAATGGATCATCAAATGG | 57.081 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
2460 | 2801 | 0.609131 | ATGTTTTCAGGGGTGCGAGG | 60.609 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
2465 | 2806 | 0.766131 | TTCAGGGGTGCGAGGTTTTA | 59.234 | 50.000 | 0.00 | 0.00 | 0.00 | 1.52 |
2510 | 2868 | 5.419542 | GACATAGGAGTGTGTTGCTTATCA | 58.580 | 41.667 | 0.00 | 0.00 | 31.16 | 2.15 |
2539 | 2897 | 1.731424 | GCACTAGCAATGCACAGCTTG | 60.731 | 52.381 | 18.52 | 18.05 | 42.88 | 4.01 |
2555 | 2913 | 3.117491 | GCTTGCAGCTCCTATCATGTA | 57.883 | 47.619 | 0.00 | 0.00 | 38.45 | 2.29 |
2556 | 2914 | 3.672808 | GCTTGCAGCTCCTATCATGTAT | 58.327 | 45.455 | 0.00 | 0.00 | 38.45 | 2.29 |
2557 | 2915 | 4.070716 | GCTTGCAGCTCCTATCATGTATT | 58.929 | 43.478 | 0.00 | 0.00 | 38.45 | 1.89 |
2559 | 2917 | 4.277515 | TGCAGCTCCTATCATGTATTCC | 57.722 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
2560 | 2918 | 3.906218 | TGCAGCTCCTATCATGTATTCCT | 59.094 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
2561 | 2919 | 5.086621 | TGCAGCTCCTATCATGTATTCCTA | 58.913 | 41.667 | 0.00 | 0.00 | 0.00 | 2.94 |
2562 | 2920 | 5.047021 | TGCAGCTCCTATCATGTATTCCTAC | 60.047 | 44.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2563 | 2921 | 5.645624 | CAGCTCCTATCATGTATTCCTACG | 58.354 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
2564 | 2922 | 4.158764 | AGCTCCTATCATGTATTCCTACGC | 59.841 | 45.833 | 0.00 | 0.00 | 0.00 | 4.42 |
2565 | 2923 | 4.082190 | GCTCCTATCATGTATTCCTACGCA | 60.082 | 45.833 | 0.00 | 0.00 | 0.00 | 5.24 |
2566 | 2924 | 5.644977 | TCCTATCATGTATTCCTACGCAG | 57.355 | 43.478 | 0.00 | 0.00 | 0.00 | 5.18 |
2586 | 5602 | 8.001881 | ACGCAGAATATGATAGTAATAGGGAG | 57.998 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
2616 | 5632 | 8.868522 | TCCAGTTTCAGATTCAATTCAATACT | 57.131 | 30.769 | 0.00 | 0.00 | 0.00 | 2.12 |
2617 | 5633 | 8.950210 | TCCAGTTTCAGATTCAATTCAATACTC | 58.050 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
2618 | 5634 | 8.186821 | CCAGTTTCAGATTCAATTCAATACTCC | 58.813 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
2669 | 5685 | 6.630444 | AATGCATCTCCATGAAGAACATAC | 57.370 | 37.500 | 0.00 | 0.00 | 37.46 | 2.39 |
2692 | 5708 | 6.418101 | ACCAATGCACTAAATCACTATCAGT | 58.582 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2693 | 5709 | 7.564793 | ACCAATGCACTAAATCACTATCAGTA | 58.435 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
2694 | 5710 | 7.495934 | ACCAATGCACTAAATCACTATCAGTAC | 59.504 | 37.037 | 0.00 | 0.00 | 0.00 | 2.73 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
13 | 14 | 8.739972 | AGGAACTGTATATTGTGGATTTTTGAC | 58.260 | 33.333 | 0.00 | 0.00 | 37.18 | 3.18 |
44 | 45 | 8.664798 | CGTCATTATGTTCAAGTCTGGATTAAA | 58.335 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
45 | 46 | 8.038351 | TCGTCATTATGTTCAAGTCTGGATTAA | 58.962 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
46 | 47 | 7.491372 | GTCGTCATTATGTTCAAGTCTGGATTA | 59.509 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
47 | 48 | 6.313905 | GTCGTCATTATGTTCAAGTCTGGATT | 59.686 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
48 | 49 | 5.812642 | GTCGTCATTATGTTCAAGTCTGGAT | 59.187 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
49 | 50 | 5.168569 | GTCGTCATTATGTTCAAGTCTGGA | 58.831 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
50 | 51 | 4.031765 | CGTCGTCATTATGTTCAAGTCTGG | 59.968 | 45.833 | 0.00 | 0.00 | 0.00 | 3.86 |
51 | 52 | 4.857037 | TCGTCGTCATTATGTTCAAGTCTG | 59.143 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
52 | 53 | 5.055642 | TCGTCGTCATTATGTTCAAGTCT | 57.944 | 39.130 | 0.00 | 0.00 | 0.00 | 3.24 |
53 | 54 | 5.950965 | ATCGTCGTCATTATGTTCAAGTC | 57.049 | 39.130 | 0.00 | 0.00 | 0.00 | 3.01 |
100 | 105 | 4.224370 | GGATCACTAGTTGGTTGGGTCTTA | 59.776 | 45.833 | 0.00 | 0.00 | 0.00 | 2.10 |
142 | 147 | 7.631933 | AGATGGCCTATCGTTACTACTACTAT | 58.368 | 38.462 | 3.32 | 0.00 | 40.86 | 2.12 |
183 | 201 | 2.839026 | GTCGAGTCACACTAAATCGTCG | 59.161 | 50.000 | 0.00 | 0.00 | 35.05 | 5.12 |
186 | 207 | 2.159612 | TCCGTCGAGTCACACTAAATCG | 60.160 | 50.000 | 0.00 | 0.00 | 34.80 | 3.34 |
190 | 211 | 0.514255 | CGTCCGTCGAGTCACACTAA | 59.486 | 55.000 | 0.00 | 0.00 | 42.86 | 2.24 |
461 | 506 | 1.137872 | CTTTCGGGACCTGATGGAGAG | 59.862 | 57.143 | 3.15 | 0.00 | 37.04 | 3.20 |
531 | 583 | 0.249405 | CCAAAGCAACACAACCGCAT | 60.249 | 50.000 | 0.00 | 0.00 | 0.00 | 4.73 |
596 | 649 | 0.951040 | GCTTCCTCCACAAGACACGG | 60.951 | 60.000 | 0.00 | 0.00 | 0.00 | 4.94 |
659 | 717 | 6.944234 | TCTCTTTCTTTCCAAGTTCTTTCC | 57.056 | 37.500 | 0.00 | 0.00 | 0.00 | 3.13 |
660 | 718 | 8.678199 | TCTTTCTCTTTCTTTCCAAGTTCTTTC | 58.322 | 33.333 | 0.00 | 0.00 | 0.00 | 2.62 |
661 | 719 | 8.581253 | TCTTTCTCTTTCTTTCCAAGTTCTTT | 57.419 | 30.769 | 0.00 | 0.00 | 0.00 | 2.52 |
662 | 720 | 8.049721 | TCTCTTTCTCTTTCTTTCCAAGTTCTT | 58.950 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
663 | 721 | 7.569240 | TCTCTTTCTCTTTCTTTCCAAGTTCT | 58.431 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
664 | 722 | 7.519809 | GCTCTCTTTCTCTTTCTTTCCAAGTTC | 60.520 | 40.741 | 0.00 | 0.00 | 0.00 | 3.01 |
665 | 723 | 6.262049 | GCTCTCTTTCTCTTTCTTTCCAAGTT | 59.738 | 38.462 | 0.00 | 0.00 | 0.00 | 2.66 |
666 | 724 | 5.762711 | GCTCTCTTTCTCTTTCTTTCCAAGT | 59.237 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
667 | 725 | 5.107143 | CGCTCTCTTTCTCTTTCTTTCCAAG | 60.107 | 44.000 | 0.00 | 0.00 | 0.00 | 3.61 |
668 | 726 | 4.752101 | CGCTCTCTTTCTCTTTCTTTCCAA | 59.248 | 41.667 | 0.00 | 0.00 | 0.00 | 3.53 |
669 | 727 | 4.202264 | ACGCTCTCTTTCTCTTTCTTTCCA | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 3.53 |
670 | 728 | 4.311606 | ACGCTCTCTTTCTCTTTCTTTCC | 58.688 | 43.478 | 0.00 | 0.00 | 0.00 | 3.13 |
671 | 729 | 4.387559 | GGACGCTCTCTTTCTCTTTCTTTC | 59.612 | 45.833 | 0.00 | 0.00 | 0.00 | 2.62 |
672 | 730 | 4.311606 | GGACGCTCTCTTTCTCTTTCTTT | 58.688 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
673 | 731 | 3.306433 | GGGACGCTCTCTTTCTCTTTCTT | 60.306 | 47.826 | 0.00 | 0.00 | 0.00 | 2.52 |
721 | 779 | 9.353999 | GGTCAATTTGTGTTCTTATCCAATTAC | 57.646 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
744 | 802 | 2.035576 | AGTGTTACTTCCTCGTGTGGTC | 59.964 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
761 | 819 | 2.632996 | TCTGATCCGAACTCCAAAGTGT | 59.367 | 45.455 | 0.00 | 0.00 | 35.36 | 3.55 |
767 | 825 | 3.698289 | ACTACTTCTGATCCGAACTCCA | 58.302 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
769 | 827 | 7.201333 | CGTTTTTACTACTTCTGATCCGAACTC | 60.201 | 40.741 | 0.00 | 0.00 | 0.00 | 3.01 |
770 | 828 | 6.585322 | CGTTTTTACTACTTCTGATCCGAACT | 59.415 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
771 | 829 | 6.583806 | TCGTTTTTACTACTTCTGATCCGAAC | 59.416 | 38.462 | 0.00 | 0.00 | 0.00 | 3.95 |
772 | 830 | 6.680810 | TCGTTTTTACTACTTCTGATCCGAA | 58.319 | 36.000 | 0.00 | 0.00 | 0.00 | 4.30 |
773 | 831 | 6.258230 | TCGTTTTTACTACTTCTGATCCGA | 57.742 | 37.500 | 0.00 | 0.00 | 0.00 | 4.55 |
774 | 832 | 6.585322 | AGTTCGTTTTTACTACTTCTGATCCG | 59.415 | 38.462 | 0.00 | 0.00 | 0.00 | 4.18 |
775 | 833 | 7.813627 | AGAGTTCGTTTTTACTACTTCTGATCC | 59.186 | 37.037 | 0.00 | 0.00 | 0.00 | 3.36 |
776 | 834 | 8.745464 | AGAGTTCGTTTTTACTACTTCTGATC | 57.255 | 34.615 | 0.00 | 0.00 | 0.00 | 2.92 |
777 | 835 | 9.543783 | AAAGAGTTCGTTTTTACTACTTCTGAT | 57.456 | 29.630 | 0.00 | 0.00 | 0.00 | 2.90 |
778 | 836 | 8.937634 | AAAGAGTTCGTTTTTACTACTTCTGA | 57.062 | 30.769 | 0.00 | 0.00 | 0.00 | 3.27 |
779 | 837 | 9.634300 | GAAAAGAGTTCGTTTTTACTACTTCTG | 57.366 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
780 | 838 | 9.597170 | AGAAAAGAGTTCGTTTTTACTACTTCT | 57.403 | 29.630 | 0.00 | 0.00 | 0.00 | 2.85 |
786 | 844 | 9.556030 | CAGAAAAGAAAAGAGTTCGTTTTTACT | 57.444 | 29.630 | 2.38 | 0.00 | 32.01 | 2.24 |
787 | 845 | 9.550811 | TCAGAAAAGAAAAGAGTTCGTTTTTAC | 57.449 | 29.630 | 2.38 | 0.00 | 32.01 | 2.01 |
789 | 847 | 9.290483 | GATCAGAAAAGAAAAGAGTTCGTTTTT | 57.710 | 29.630 | 2.38 | 0.00 | 32.01 | 1.94 |
790 | 848 | 7.640240 | CGATCAGAAAAGAAAAGAGTTCGTTTT | 59.360 | 33.333 | 0.00 | 0.80 | 32.01 | 2.43 |
817 | 878 | 7.663081 | TGCACTTGGGATAAGATAATCTTCATC | 59.337 | 37.037 | 0.00 | 0.00 | 37.89 | 2.92 |
826 | 887 | 4.080807 | TCCGTTTGCACTTGGGATAAGATA | 60.081 | 41.667 | 0.00 | 0.00 | 0.00 | 1.98 |
831 | 892 | 2.570415 | TTCCGTTTGCACTTGGGATA | 57.430 | 45.000 | 0.00 | 0.00 | 0.00 | 2.59 |
835 | 897 | 0.031994 | CCCTTTCCGTTTGCACTTGG | 59.968 | 55.000 | 0.00 | 0.00 | 0.00 | 3.61 |
849 | 911 | 1.893919 | GAGGACGAGCAGCTCCCTTT | 61.894 | 60.000 | 18.45 | 3.24 | 0.00 | 3.11 |
869 | 932 | 1.677552 | GGGACAAGGAAGAAGCGGA | 59.322 | 57.895 | 0.00 | 0.00 | 0.00 | 5.54 |
903 | 966 | 3.753294 | TTTCTTGTCGAGGAGAAAGCT | 57.247 | 42.857 | 15.49 | 0.00 | 37.06 | 3.74 |
911 | 974 | 1.574702 | GGGGCGTTTTCTTGTCGAGG | 61.575 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
915 | 978 | 1.285950 | GCAGGGGCGTTTTCTTGTC | 59.714 | 57.895 | 0.00 | 0.00 | 0.00 | 3.18 |
964 | 1042 | 4.614764 | CGACCGAGAAGAGATGTGGATATG | 60.615 | 50.000 | 0.00 | 0.00 | 0.00 | 1.78 |
971 | 1049 | 2.359531 | GGAATCGACCGAGAAGAGATGT | 59.640 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
974 | 1052 | 1.064611 | AGGGAATCGACCGAGAAGAGA | 60.065 | 52.381 | 0.00 | 0.00 | 0.00 | 3.10 |
984 | 1062 | 3.477210 | AAAGGATGCTAGGGAATCGAC | 57.523 | 47.619 | 0.00 | 0.00 | 0.00 | 4.20 |
1006 | 1084 | 4.473444 | AGAGAGATCAAAGTGGCCAAAAA | 58.527 | 39.130 | 7.24 | 0.00 | 0.00 | 1.94 |
1007 | 1085 | 4.104383 | AGAGAGATCAAAGTGGCCAAAA | 57.896 | 40.909 | 7.24 | 0.00 | 0.00 | 2.44 |
1008 | 1086 | 3.795688 | AGAGAGATCAAAGTGGCCAAA | 57.204 | 42.857 | 7.24 | 0.00 | 0.00 | 3.28 |
1009 | 1087 | 3.055094 | GGTAGAGAGATCAAAGTGGCCAA | 60.055 | 47.826 | 7.24 | 0.00 | 0.00 | 4.52 |
1010 | 1088 | 2.501723 | GGTAGAGAGATCAAAGTGGCCA | 59.498 | 50.000 | 0.00 | 0.00 | 0.00 | 5.36 |
1011 | 1089 | 2.501723 | TGGTAGAGAGATCAAAGTGGCC | 59.498 | 50.000 | 0.00 | 0.00 | 0.00 | 5.36 |
1012 | 1090 | 3.895232 | TGGTAGAGAGATCAAAGTGGC | 57.105 | 47.619 | 0.00 | 0.00 | 0.00 | 5.01 |
1013 | 1091 | 4.187694 | GCTTGGTAGAGAGATCAAAGTGG | 58.812 | 47.826 | 0.00 | 0.00 | 0.00 | 4.00 |
1014 | 1092 | 4.187694 | GGCTTGGTAGAGAGATCAAAGTG | 58.812 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
1015 | 1093 | 3.198853 | GGGCTTGGTAGAGAGATCAAAGT | 59.801 | 47.826 | 0.00 | 0.00 | 0.00 | 2.66 |
1055 | 1136 | 1.450312 | CGCTCCCTTGGTGTCCATC | 60.450 | 63.158 | 0.00 | 0.00 | 31.53 | 3.51 |
1112 | 1193 | 3.160047 | AGCATGGCCTCCTCCTCG | 61.160 | 66.667 | 3.32 | 0.00 | 0.00 | 4.63 |
1267 | 1356 | 3.713615 | CTCGTCGTGTACTCGCCGG | 62.714 | 68.421 | 18.73 | 0.00 | 33.18 | 6.13 |
1268 | 1357 | 2.276493 | CTCGTCGTGTACTCGCCG | 60.276 | 66.667 | 13.81 | 13.81 | 33.62 | 6.46 |
1269 | 1358 | 2.576317 | GCTCGTCGTGTACTCGCC | 60.576 | 66.667 | 12.30 | 0.00 | 0.00 | 5.54 |
1270 | 1359 | 1.396543 | CTTGCTCGTCGTGTACTCGC | 61.397 | 60.000 | 12.30 | 7.00 | 0.00 | 5.03 |
1271 | 1360 | 0.793478 | CCTTGCTCGTCGTGTACTCG | 60.793 | 60.000 | 10.97 | 10.97 | 0.00 | 4.18 |
1272 | 1361 | 1.071567 | GCCTTGCTCGTCGTGTACTC | 61.072 | 60.000 | 0.00 | 0.00 | 0.00 | 2.59 |
1273 | 1362 | 1.080705 | GCCTTGCTCGTCGTGTACT | 60.081 | 57.895 | 0.00 | 0.00 | 0.00 | 2.73 |
1274 | 1363 | 2.092882 | GGCCTTGCTCGTCGTGTAC | 61.093 | 63.158 | 0.00 | 0.00 | 0.00 | 2.90 |
1275 | 1364 | 2.260434 | GGCCTTGCTCGTCGTGTA | 59.740 | 61.111 | 0.00 | 0.00 | 0.00 | 2.90 |
1276 | 1365 | 4.681978 | GGGCCTTGCTCGTCGTGT | 62.682 | 66.667 | 0.84 | 0.00 | 0.00 | 4.49 |
1277 | 1366 | 4.680237 | TGGGCCTTGCTCGTCGTG | 62.680 | 66.667 | 4.53 | 0.00 | 0.00 | 4.35 |
1278 | 1367 | 4.681978 | GTGGGCCTTGCTCGTCGT | 62.682 | 66.667 | 4.53 | 0.00 | 0.00 | 4.34 |
1297 | 1386 | 3.740397 | TCGTGTACTCACCGGCCG | 61.740 | 66.667 | 21.04 | 21.04 | 41.09 | 6.13 |
1298 | 1387 | 2.126189 | GTCGTGTACTCACCGGCC | 60.126 | 66.667 | 0.00 | 0.00 | 41.09 | 6.13 |
1299 | 1388 | 2.503375 | CGTCGTGTACTCACCGGC | 60.503 | 66.667 | 0.00 | 0.00 | 41.09 | 6.13 |
1300 | 1389 | 2.503375 | GCGTCGTGTACTCACCGG | 60.503 | 66.667 | 0.00 | 0.00 | 41.09 | 5.28 |
1301 | 1390 | 1.511464 | GAGCGTCGTGTACTCACCG | 60.511 | 63.158 | 0.00 | 0.00 | 41.09 | 4.94 |
1302 | 1391 | 0.039798 | TTGAGCGTCGTGTACTCACC | 60.040 | 55.000 | 0.47 | 0.00 | 40.03 | 4.02 |
1303 | 1392 | 1.328439 | CTTGAGCGTCGTGTACTCAC | 58.672 | 55.000 | 0.47 | 0.00 | 40.03 | 3.51 |
1304 | 1393 | 0.240145 | CCTTGAGCGTCGTGTACTCA | 59.760 | 55.000 | 0.00 | 0.00 | 38.62 | 3.41 |
1305 | 1394 | 1.071567 | GCCTTGAGCGTCGTGTACTC | 61.072 | 60.000 | 0.00 | 0.00 | 0.00 | 2.59 |
1306 | 1395 | 1.080705 | GCCTTGAGCGTCGTGTACT | 60.081 | 57.895 | 0.00 | 0.00 | 0.00 | 2.73 |
1307 | 1396 | 2.092882 | GGCCTTGAGCGTCGTGTAC | 61.093 | 63.158 | 0.00 | 0.00 | 45.17 | 2.90 |
1308 | 1397 | 2.260434 | GGCCTTGAGCGTCGTGTA | 59.740 | 61.111 | 0.00 | 0.00 | 45.17 | 2.90 |
1309 | 1398 | 4.681978 | GGGCCTTGAGCGTCGTGT | 62.682 | 66.667 | 0.84 | 0.00 | 45.17 | 4.49 |
1330 | 1419 | 3.511595 | TAGTGTACTCGCCGGCGG | 61.512 | 66.667 | 44.95 | 35.79 | 40.25 | 6.13 |
1331 | 1420 | 2.277756 | GTAGTGTACTCGCCGGCG | 60.278 | 66.667 | 42.13 | 42.13 | 41.35 | 6.46 |
1372 | 1461 | 1.374758 | GCCTTGCTCGCAGTGTACT | 60.375 | 57.895 | 0.00 | 0.00 | 0.00 | 2.73 |
1373 | 1462 | 2.391389 | GGCCTTGCTCGCAGTGTAC | 61.391 | 63.158 | 0.00 | 0.00 | 0.00 | 2.90 |
1374 | 1463 | 2.047274 | GGCCTTGCTCGCAGTGTA | 60.047 | 61.111 | 0.00 | 0.00 | 0.00 | 2.90 |
1399 | 1488 | 3.792047 | TCGTCGTGTACTCGCCGG | 61.792 | 66.667 | 18.73 | 0.00 | 33.18 | 6.13 |
1400 | 1489 | 2.572647 | GTCGTCGTGTACTCGCCG | 60.573 | 66.667 | 13.81 | 13.81 | 33.62 | 6.46 |
1401 | 1490 | 2.202401 | GGTCGTCGTGTACTCGCC | 60.202 | 66.667 | 12.30 | 0.00 | 0.00 | 5.54 |
1402 | 1491 | 1.063951 | CTTGGTCGTCGTGTACTCGC | 61.064 | 60.000 | 12.30 | 7.00 | 0.00 | 5.03 |
1403 | 1492 | 0.453950 | CCTTGGTCGTCGTGTACTCG | 60.454 | 60.000 | 10.97 | 10.97 | 0.00 | 4.18 |
1404 | 1493 | 0.731855 | GCCTTGGTCGTCGTGTACTC | 60.732 | 60.000 | 0.00 | 0.00 | 0.00 | 2.59 |
1405 | 1494 | 1.288127 | GCCTTGGTCGTCGTGTACT | 59.712 | 57.895 | 0.00 | 0.00 | 0.00 | 2.73 |
1406 | 1495 | 1.735559 | GGCCTTGGTCGTCGTGTAC | 60.736 | 63.158 | 0.00 | 0.00 | 0.00 | 2.90 |
1407 | 1496 | 2.652530 | GGCCTTGGTCGTCGTGTA | 59.347 | 61.111 | 0.00 | 0.00 | 0.00 | 2.90 |
1408 | 1497 | 4.309950 | GGGCCTTGGTCGTCGTGT | 62.310 | 66.667 | 0.84 | 0.00 | 0.00 | 4.49 |
1430 | 1519 | 4.139234 | GTCGTGTACTCCCCGGCC | 62.139 | 72.222 | 0.00 | 0.00 | 0.00 | 6.13 |
1431 | 1520 | 4.487412 | CGTCGTGTACTCCCCGGC | 62.487 | 72.222 | 0.00 | 0.00 | 0.00 | 6.13 |
1432 | 1521 | 4.487412 | GCGTCGTGTACTCCCCGG | 62.487 | 72.222 | 0.00 | 0.00 | 0.00 | 5.73 |
1433 | 1522 | 3.392595 | GAGCGTCGTGTACTCCCCG | 62.393 | 68.421 | 0.00 | 0.00 | 0.00 | 5.73 |
1434 | 1523 | 1.870055 | TTGAGCGTCGTGTACTCCCC | 61.870 | 60.000 | 0.00 | 0.00 | 0.00 | 4.81 |
1435 | 1524 | 0.456312 | CTTGAGCGTCGTGTACTCCC | 60.456 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1436 | 1525 | 0.456312 | CCTTGAGCGTCGTGTACTCC | 60.456 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1437 | 1526 | 1.071567 | GCCTTGAGCGTCGTGTACTC | 61.072 | 60.000 | 0.00 | 0.00 | 0.00 | 2.59 |
1628 | 1720 | 1.692411 | ACCAACAAAGCCTCAAGTCC | 58.308 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1629 | 1721 | 3.883489 | AGTAACCAACAAAGCCTCAAGTC | 59.117 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
1630 | 1722 | 3.632145 | CAGTAACCAACAAAGCCTCAAGT | 59.368 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
1631 | 1723 | 3.882888 | TCAGTAACCAACAAAGCCTCAAG | 59.117 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
1632 | 1724 | 3.892284 | TCAGTAACCAACAAAGCCTCAA | 58.108 | 40.909 | 0.00 | 0.00 | 0.00 | 3.02 |
1633 | 1725 | 3.569194 | TCAGTAACCAACAAAGCCTCA | 57.431 | 42.857 | 0.00 | 0.00 | 0.00 | 3.86 |
1634 | 1726 | 4.278419 | ACATTCAGTAACCAACAAAGCCTC | 59.722 | 41.667 | 0.00 | 0.00 | 0.00 | 4.70 |
1635 | 1727 | 4.215109 | ACATTCAGTAACCAACAAAGCCT | 58.785 | 39.130 | 0.00 | 0.00 | 0.00 | 4.58 |
1657 | 1749 | 9.391006 | ACCTAAAATAATTATCAGCGACAGAAA | 57.609 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
1701 | 1793 | 1.765904 | TGCCGGGATCAACAGCTAATA | 59.234 | 47.619 | 2.18 | 0.00 | 0.00 | 0.98 |
1702 | 1794 | 0.546122 | TGCCGGGATCAACAGCTAAT | 59.454 | 50.000 | 2.18 | 0.00 | 0.00 | 1.73 |
1780 | 1873 | 9.403583 | TGGAAAGCTTCTAGTAAAAGAAAGAAA | 57.596 | 29.630 | 0.00 | 0.00 | 35.14 | 2.52 |
1838 | 1933 | 2.439409 | TGAAGGTCCAATGCATGTCTG | 58.561 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
1848 | 1943 | 3.073798 | TGGCTAATGAGTTGAAGGTCCAA | 59.926 | 43.478 | 0.00 | 0.00 | 0.00 | 3.53 |
1851 | 1946 | 3.674997 | TGTGGCTAATGAGTTGAAGGTC | 58.325 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
1863 | 1963 | 5.163622 | GCATGTGTTGTAAGATGTGGCTAAT | 60.164 | 40.000 | 0.00 | 0.00 | 0.00 | 1.73 |
1924 | 2038 | 2.203480 | AGCTCCAGGGCGCAAAAA | 60.203 | 55.556 | 10.83 | 0.00 | 37.29 | 1.94 |
1925 | 2039 | 2.985282 | CAGCTCCAGGGCGCAAAA | 60.985 | 61.111 | 10.83 | 0.00 | 37.29 | 2.44 |
1931 | 2045 | 4.459089 | GTCGTCCAGCTCCAGGGC | 62.459 | 72.222 | 0.00 | 0.00 | 0.00 | 5.19 |
1932 | 2046 | 2.303549 | GATGTCGTCCAGCTCCAGGG | 62.304 | 65.000 | 0.00 | 0.00 | 0.00 | 4.45 |
1933 | 2047 | 1.142748 | GATGTCGTCCAGCTCCAGG | 59.857 | 63.158 | 0.00 | 0.00 | 0.00 | 4.45 |
1934 | 2048 | 0.247460 | TTGATGTCGTCCAGCTCCAG | 59.753 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1935 | 2049 | 0.037326 | GTTGATGTCGTCCAGCTCCA | 60.037 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1936 | 2050 | 0.037326 | TGTTGATGTCGTCCAGCTCC | 60.037 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
1937 | 2051 | 1.354040 | CTGTTGATGTCGTCCAGCTC | 58.646 | 55.000 | 0.00 | 0.00 | 0.00 | 4.09 |
1938 | 2052 | 0.671781 | GCTGTTGATGTCGTCCAGCT | 60.672 | 55.000 | 13.23 | 0.00 | 43.89 | 4.24 |
1939 | 2053 | 0.671781 | AGCTGTTGATGTCGTCCAGC | 60.672 | 55.000 | 12.81 | 12.81 | 46.78 | 4.85 |
1940 | 2054 | 1.462283 | CAAGCTGTTGATGTCGTCCAG | 59.538 | 52.381 | 0.00 | 0.00 | 35.46 | 3.86 |
1941 | 2055 | 1.069978 | TCAAGCTGTTGATGTCGTCCA | 59.930 | 47.619 | 0.00 | 0.00 | 37.79 | 4.02 |
1965 | 2079 | 7.664552 | TTGAGGGCAAAGATTATGAATTCAT | 57.335 | 32.000 | 23.75 | 23.75 | 40.22 | 2.57 |
1967 | 2081 | 7.719483 | TGATTGAGGGCAAAGATTATGAATTC | 58.281 | 34.615 | 0.00 | 0.00 | 37.59 | 2.17 |
1982 | 2096 | 0.107214 | TGTCCGGAATGATTGAGGGC | 60.107 | 55.000 | 5.23 | 0.00 | 0.00 | 5.19 |
2001 | 2115 | 3.019564 | GGTGGTAAGAGATGCAAGCATT | 58.980 | 45.455 | 9.16 | 0.00 | 36.70 | 3.56 |
2002 | 2116 | 2.648059 | GGTGGTAAGAGATGCAAGCAT | 58.352 | 47.619 | 7.35 | 7.35 | 39.69 | 3.79 |
2003 | 2117 | 1.675714 | CGGTGGTAAGAGATGCAAGCA | 60.676 | 52.381 | 0.00 | 0.00 | 0.00 | 3.91 |
2013 | 2127 | 0.036164 | AGCAATGCACGGTGGTAAGA | 59.964 | 50.000 | 8.35 | 0.00 | 0.00 | 2.10 |
2014 | 2128 | 0.447801 | GAGCAATGCACGGTGGTAAG | 59.552 | 55.000 | 8.35 | 0.00 | 0.00 | 2.34 |
2016 | 2130 | 1.376683 | GGAGCAATGCACGGTGGTA | 60.377 | 57.895 | 8.35 | 0.00 | 0.00 | 3.25 |
2019 | 2133 | 3.803082 | CCGGAGCAATGCACGGTG | 61.803 | 66.667 | 25.81 | 3.15 | 42.95 | 4.94 |
2020 | 2134 | 3.545124 | TTCCGGAGCAATGCACGGT | 62.545 | 57.895 | 30.05 | 2.92 | 46.09 | 4.83 |
2021 | 2135 | 1.861542 | TTTTCCGGAGCAATGCACGG | 61.862 | 55.000 | 27.40 | 27.40 | 46.87 | 4.94 |
2022 | 2136 | 0.171007 | ATTTTCCGGAGCAATGCACG | 59.829 | 50.000 | 8.35 | 11.66 | 0.00 | 5.34 |
2023 | 2137 | 2.094545 | AGAATTTTCCGGAGCAATGCAC | 60.095 | 45.455 | 15.62 | 0.00 | 0.00 | 4.57 |
2024 | 2138 | 2.170166 | AGAATTTTCCGGAGCAATGCA | 58.830 | 42.857 | 15.62 | 0.00 | 0.00 | 3.96 |
2025 | 2139 | 2.947448 | AGAATTTTCCGGAGCAATGC | 57.053 | 45.000 | 3.34 | 6.28 | 0.00 | 3.56 |
2026 | 2140 | 5.355350 | AGACTTAGAATTTTCCGGAGCAATG | 59.645 | 40.000 | 3.34 | 0.00 | 0.00 | 2.82 |
2027 | 2141 | 5.501156 | AGACTTAGAATTTTCCGGAGCAAT | 58.499 | 37.500 | 3.34 | 4.57 | 0.00 | 3.56 |
2029 | 2143 | 4.553330 | AGACTTAGAATTTTCCGGAGCA | 57.447 | 40.909 | 3.34 | 0.00 | 0.00 | 4.26 |
2030 | 2144 | 5.903810 | TCTAGACTTAGAATTTTCCGGAGC | 58.096 | 41.667 | 3.34 | 0.00 | 33.01 | 4.70 |
2031 | 2145 | 6.097129 | ACCTCTAGACTTAGAATTTTCCGGAG | 59.903 | 42.308 | 3.34 | 0.00 | 35.55 | 4.63 |
2034 | 2226 | 6.757478 | GGAACCTCTAGACTTAGAATTTTCCG | 59.243 | 42.308 | 0.00 | 0.00 | 35.55 | 4.30 |
2036 | 2228 | 9.806203 | GTAGGAACCTCTAGACTTAGAATTTTC | 57.194 | 37.037 | 0.00 | 0.00 | 35.55 | 2.29 |
2039 | 2231 | 8.919145 | CATGTAGGAACCTCTAGACTTAGAATT | 58.081 | 37.037 | 0.00 | 0.00 | 35.55 | 2.17 |
2041 | 2233 | 7.640313 | TCATGTAGGAACCTCTAGACTTAGAA | 58.360 | 38.462 | 0.00 | 0.00 | 35.55 | 2.10 |
2046 | 2238 | 5.128008 | GCTTTCATGTAGGAACCTCTAGACT | 59.872 | 44.000 | 0.00 | 0.00 | 0.00 | 3.24 |
2047 | 2239 | 5.105310 | TGCTTTCATGTAGGAACCTCTAGAC | 60.105 | 44.000 | 0.00 | 0.00 | 0.00 | 2.59 |
2049 | 2241 | 5.344743 | TGCTTTCATGTAGGAACCTCTAG | 57.655 | 43.478 | 0.00 | 0.00 | 0.00 | 2.43 |
2050 | 2242 | 4.383118 | GCTGCTTTCATGTAGGAACCTCTA | 60.383 | 45.833 | 0.00 | 0.00 | 0.00 | 2.43 |
2052 | 2244 | 2.680339 | GCTGCTTTCATGTAGGAACCTC | 59.320 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2054 | 2246 | 2.716217 | AGCTGCTTTCATGTAGGAACC | 58.284 | 47.619 | 0.00 | 0.00 | 0.00 | 3.62 |
2056 | 2248 | 2.489329 | GCAAGCTGCTTTCATGTAGGAA | 59.511 | 45.455 | 13.10 | 0.00 | 40.96 | 3.36 |
2057 | 2249 | 2.086869 | GCAAGCTGCTTTCATGTAGGA | 58.913 | 47.619 | 13.10 | 0.00 | 40.96 | 2.94 |
2058 | 2250 | 2.556534 | GCAAGCTGCTTTCATGTAGG | 57.443 | 50.000 | 13.10 | 0.00 | 40.96 | 3.18 |
2069 | 2261 | 2.489329 | TCTTGTTCCATAAGCAAGCTGC | 59.511 | 45.455 | 0.00 | 0.00 | 45.46 | 5.25 |
2070 | 2262 | 4.771590 | TTCTTGTTCCATAAGCAAGCTG | 57.228 | 40.909 | 0.00 | 0.00 | 39.36 | 4.24 |
2071 | 2263 | 5.012239 | TGATTCTTGTTCCATAAGCAAGCT | 58.988 | 37.500 | 0.00 | 0.00 | 39.36 | 3.74 |
2072 | 2264 | 5.105997 | ACTGATTCTTGTTCCATAAGCAAGC | 60.106 | 40.000 | 0.00 | 0.00 | 39.36 | 4.01 |
2073 | 2265 | 6.506500 | ACTGATTCTTGTTCCATAAGCAAG | 57.493 | 37.500 | 0.00 | 0.00 | 40.47 | 4.01 |
2111 | 2303 | 1.858798 | GCTGCGCTGATGTTGCATAAG | 60.859 | 52.381 | 19.32 | 0.00 | 38.07 | 1.73 |
2138 | 2367 | 7.890515 | TGCATTTTGTTATCCAGATTACAACA | 58.109 | 30.769 | 10.77 | 6.34 | 39.22 | 3.33 |
2139 | 2368 | 8.931385 | ATGCATTTTGTTATCCAGATTACAAC | 57.069 | 30.769 | 10.77 | 2.61 | 39.22 | 3.32 |
2156 | 2400 | 8.140628 | TGCCATAATGTAATAACGATGCATTTT | 58.859 | 29.630 | 0.00 | 0.00 | 32.79 | 1.82 |
2157 | 2401 | 7.656412 | TGCCATAATGTAATAACGATGCATTT | 58.344 | 30.769 | 0.00 | 0.00 | 32.79 | 2.32 |
2161 | 2405 | 6.480524 | TCTGCCATAATGTAATAACGATGC | 57.519 | 37.500 | 0.00 | 0.00 | 0.00 | 3.91 |
2164 | 2408 | 7.201661 | GGTGTTTCTGCCATAATGTAATAACGA | 60.202 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
2166 | 2410 | 6.910433 | CGGTGTTTCTGCCATAATGTAATAAC | 59.090 | 38.462 | 0.00 | 0.00 | 0.00 | 1.89 |
2171 | 2415 | 3.687212 | CACGGTGTTTCTGCCATAATGTA | 59.313 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
2209 | 2453 | 0.391130 | GCTTGGATCGTGTGCACCTA | 60.391 | 55.000 | 15.69 | 0.00 | 0.00 | 3.08 |
2211 | 2455 | 2.690778 | GGCTTGGATCGTGTGCACC | 61.691 | 63.158 | 15.69 | 4.74 | 0.00 | 5.01 |
2213 | 2457 | 1.073025 | AAGGCTTGGATCGTGTGCA | 59.927 | 52.632 | 0.00 | 0.00 | 0.00 | 4.57 |
2297 | 2635 | 6.092670 | CGAGTGAAGATGTGTTGTTTCCATAT | 59.907 | 38.462 | 0.00 | 0.00 | 0.00 | 1.78 |
2298 | 2636 | 5.408299 | CGAGTGAAGATGTGTTGTTTCCATA | 59.592 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
2299 | 2637 | 4.214119 | CGAGTGAAGATGTGTTGTTTCCAT | 59.786 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
2300 | 2638 | 3.559655 | CGAGTGAAGATGTGTTGTTTCCA | 59.440 | 43.478 | 0.00 | 0.00 | 0.00 | 3.53 |
2313 | 2651 | 1.798223 | CATCGGTTTTGCGAGTGAAGA | 59.202 | 47.619 | 0.00 | 0.00 | 0.00 | 2.87 |
2321 | 2659 | 1.001815 | AGACCAAACATCGGTTTTGCG | 60.002 | 47.619 | 0.00 | 0.00 | 44.63 | 4.85 |
2352 | 2690 | 7.959658 | TGGATGTTAACTTCCATTTGATGAT | 57.040 | 32.000 | 29.87 | 3.00 | 42.89 | 2.45 |
2363 | 2701 | 3.153919 | TGGCCTGTTGGATGTTAACTTC | 58.846 | 45.455 | 3.32 | 12.00 | 34.57 | 3.01 |
2460 | 2801 | 7.468141 | AATTCTGAAGGGGTTCATCTAAAAC | 57.532 | 36.000 | 0.00 | 0.00 | 0.00 | 2.43 |
2465 | 2806 | 4.044571 | TCCAAATTCTGAAGGGGTTCATCT | 59.955 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
2539 | 2897 | 4.550076 | AGGAATACATGATAGGAGCTGC | 57.450 | 45.455 | 0.00 | 0.00 | 0.00 | 5.25 |
2541 | 2899 | 4.158764 | GCGTAGGAATACATGATAGGAGCT | 59.841 | 45.833 | 0.00 | 0.00 | 0.00 | 4.09 |
2542 | 2900 | 4.082190 | TGCGTAGGAATACATGATAGGAGC | 60.082 | 45.833 | 0.00 | 0.00 | 0.00 | 4.70 |
2543 | 2901 | 5.416013 | TCTGCGTAGGAATACATGATAGGAG | 59.584 | 44.000 | 0.00 | 0.00 | 0.00 | 3.69 |
2544 | 2902 | 5.321927 | TCTGCGTAGGAATACATGATAGGA | 58.678 | 41.667 | 0.00 | 0.00 | 0.00 | 2.94 |
2545 | 2903 | 5.644977 | TCTGCGTAGGAATACATGATAGG | 57.355 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
2546 | 2904 | 9.242477 | CATATTCTGCGTAGGAATACATGATAG | 57.758 | 37.037 | 0.00 | 0.00 | 38.12 | 2.08 |
2547 | 2905 | 8.966868 | TCATATTCTGCGTAGGAATACATGATA | 58.033 | 33.333 | 0.00 | 0.00 | 38.12 | 2.15 |
2548 | 2906 | 7.840931 | TCATATTCTGCGTAGGAATACATGAT | 58.159 | 34.615 | 0.00 | 0.00 | 38.12 | 2.45 |
2550 | 2908 | 9.242477 | CTATCATATTCTGCGTAGGAATACATG | 57.758 | 37.037 | 0.00 | 0.00 | 38.12 | 3.21 |
2551 | 2909 | 8.972127 | ACTATCATATTCTGCGTAGGAATACAT | 58.028 | 33.333 | 0.00 | 3.51 | 38.12 | 2.29 |
2557 | 2915 | 9.121658 | CCTATTACTATCATATTCTGCGTAGGA | 57.878 | 37.037 | 0.00 | 0.00 | 0.00 | 2.94 |
2559 | 2917 | 9.121658 | TCCCTATTACTATCATATTCTGCGTAG | 57.878 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
2560 | 2918 | 9.121658 | CTCCCTATTACTATCATATTCTGCGTA | 57.878 | 37.037 | 0.00 | 0.00 | 0.00 | 4.42 |
2561 | 2919 | 7.616150 | ACTCCCTATTACTATCATATTCTGCGT | 59.384 | 37.037 | 0.00 | 0.00 | 0.00 | 5.24 |
2562 | 2920 | 8.001881 | ACTCCCTATTACTATCATATTCTGCG | 57.998 | 38.462 | 0.00 | 0.00 | 0.00 | 5.18 |
2580 | 5596 | 7.182026 | TGAATCTGAAACTGGAATTACTCCCTA | 59.818 | 37.037 | 0.00 | 0.00 | 44.69 | 3.53 |
2586 | 5602 | 9.912634 | TTGAATTGAATCTGAAACTGGAATTAC | 57.087 | 29.630 | 0.00 | 0.00 | 0.00 | 1.89 |
2618 | 5634 | 2.555757 | CTGTTCTTGCCTTCCTTGGAAG | 59.444 | 50.000 | 19.53 | 19.53 | 0.00 | 3.46 |
2669 | 5685 | 6.932356 | ACTGATAGTGATTTAGTGCATTGG | 57.068 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.