Multiple sequence alignment - TraesCS4B01G317000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G317000 chr4B 100.000 3566 0 0 1 3566 606819442 606815877 0.000000e+00 6586
1 TraesCS4B01G317000 chr4B 96.136 1760 65 2 791 2550 606828670 606826914 0.000000e+00 2870
2 TraesCS4B01G317000 chr4B 94.547 1779 89 5 777 2550 606867922 606866147 0.000000e+00 2741
3 TraesCS4B01G317000 chr4B 90.635 2093 136 31 472 2550 606909646 606907600 0.000000e+00 2724
4 TraesCS4B01G317000 chr4B 97.610 795 17 1 1 795 606829553 606828761 0.000000e+00 1362
5 TraesCS4B01G317000 chr4B 80.285 492 43 29 324 777 606869429 606868954 4.440000e-84 322
6 TraesCS4B01G317000 chr4A 94.581 2694 136 7 1 2691 685942000 685939314 0.000000e+00 4157
7 TraesCS4B01G317000 chr4A 94.205 1812 98 6 884 2691 685998868 685997060 0.000000e+00 2758
8 TraesCS4B01G317000 chr4A 94.577 1678 70 4 878 2552 686140235 686138576 0.000000e+00 2575
9 TraesCS4B01G317000 chr4A 83.920 199 27 3 2690 2887 685997031 685996837 6.080000e-43 185
10 TraesCS4B01G317000 chr4D 95.069 2596 91 7 974 3566 479637325 479634764 0.000000e+00 4050
11 TraesCS4B01G317000 chr4D 92.067 2080 103 33 290 2328 479639486 479637428 0.000000e+00 2870
12 TraesCS4B01G317000 chr4D 91.178 2097 125 36 472 2550 479676951 479674897 0.000000e+00 2793
13 TraesCS4B01G317000 chrUn 94.393 2354 93 17 1 2328 61735398 61733058 0.000000e+00 3579
14 TraesCS4B01G317000 chrUn 96.449 1577 56 0 974 2550 61732955 61731379 0.000000e+00 2603


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G317000 chr4B 606815877 606819442 3565 True 6586.0 6586 100.0000 1 3566 1 chr4B.!!$R1 3565
1 TraesCS4B01G317000 chr4B 606907600 606909646 2046 True 2724.0 2724 90.6350 472 2550 1 chr4B.!!$R2 2078
2 TraesCS4B01G317000 chr4B 606826914 606829553 2639 True 2116.0 2870 96.8730 1 2550 2 chr4B.!!$R3 2549
3 TraesCS4B01G317000 chr4B 606866147 606869429 3282 True 1531.5 2741 87.4160 324 2550 2 chr4B.!!$R4 2226
4 TraesCS4B01G317000 chr4A 685939314 685942000 2686 True 4157.0 4157 94.5810 1 2691 1 chr4A.!!$R1 2690
5 TraesCS4B01G317000 chr4A 686138576 686140235 1659 True 2575.0 2575 94.5770 878 2552 1 chr4A.!!$R2 1674
6 TraesCS4B01G317000 chr4A 685996837 685998868 2031 True 1471.5 2758 89.0625 884 2887 2 chr4A.!!$R3 2003
7 TraesCS4B01G317000 chr4D 479634764 479639486 4722 True 3460.0 4050 93.5680 290 3566 2 chr4D.!!$R2 3276
8 TraesCS4B01G317000 chr4D 479674897 479676951 2054 True 2793.0 2793 91.1780 472 2550 1 chr4D.!!$R1 2078
9 TraesCS4B01G317000 chrUn 61731379 61735398 4019 True 3091.0 3579 95.4210 1 2550 2 chrUn.!!$R1 2549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
887 2092 1.133025 CTTGCCTTTATGCCTTCACCG 59.867 52.381 0.0 0.0 0.0 4.94 F
2250 4928 0.320421 TCTTCTTCGCCAACTTCGGG 60.320 55.000 0.0 0.0 0.0 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2409 6544 1.179152 TGCCGATTCCTCGTGAGTAA 58.821 50.0 0.00 0.0 43.49 2.24 R
3375 7550 0.110486 GGTGGGTGACATGTCCTGTT 59.890 55.0 22.85 0.0 38.54 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
142 144 3.055312 GGACCAACGAGACCCTTAATCTT 60.055 47.826 0.00 0.00 0.00 2.40
584 640 6.477033 CAGTCTGTTCCTTTCAGGTATATTCG 59.523 42.308 0.00 0.00 36.53 3.34
598 654 4.094887 GGTATATTCGCAGCATAACCATGG 59.905 45.833 11.19 11.19 32.36 3.66
748 820 1.273327 GGCAAGACATTTGACCCTTGG 59.727 52.381 0.00 0.00 37.18 3.61
762 835 7.948034 TTGACCCTTGGGTATATTTTTGTAG 57.052 36.000 11.86 0.00 0.00 2.74
855 2060 4.581824 ACTAGCAATGTTGGATTGGCATAG 59.418 41.667 0.00 0.00 0.00 2.23
860 2065 5.221303 GCAATGTTGGATTGGCATAGTACAT 60.221 40.000 0.00 0.00 0.00 2.29
887 2092 1.133025 CTTGCCTTTATGCCTTCACCG 59.867 52.381 0.00 0.00 0.00 4.94
1317 2538 0.530744 TCTACGGCTTCACGCTCATT 59.469 50.000 0.00 0.00 39.13 2.57
1383 2604 3.527427 GCCAAGGGCGTAATGGGC 61.527 66.667 0.55 0.00 39.62 5.36
1449 2670 2.283604 TACCCTCTGAGCGCCACA 60.284 61.111 2.29 3.92 0.00 4.17
1548 2769 5.779529 TCCTATTTGGTACTATCGTCACC 57.220 43.478 0.00 0.00 37.07 4.02
1563 2784 1.402259 GTCACCATCATCGTCTCGTCT 59.598 52.381 0.00 0.00 0.00 4.18
1611 2832 1.006086 CATTCTACATTGACGCCGCA 58.994 50.000 0.00 0.00 0.00 5.69
1836 3057 2.986290 CGGGCCACTGGTGATACA 59.014 61.111 4.39 0.00 0.00 2.29
1869 3090 0.670546 CCCGACAGTTCATGAAGCGT 60.671 55.000 8.80 8.90 0.00 5.07
1929 3150 1.069823 CTGCTCGATGTGGCCTTCTAT 59.930 52.381 3.32 0.00 0.00 1.98
2121 3342 1.272704 GGGAGGTTTTGGATCCAGCTT 60.273 52.381 15.53 5.98 34.62 3.74
2250 4928 0.320421 TCTTCTTCGCCAACTTCGGG 60.320 55.000 0.00 0.00 0.00 5.14
2355 6490 1.146041 TAAGGCAGGCGCGATCATT 59.854 52.632 12.10 1.08 39.92 2.57
2382 6517 1.520787 CGGGTTCCTGTATGCGTCC 60.521 63.158 0.00 0.00 0.00 4.79
2418 6553 2.165380 CGAGACCGGTTACTCACGA 58.835 57.895 19.97 0.00 33.86 4.35
2514 6649 1.761174 GGAGTCCAAGGGCAAGTCA 59.239 57.895 3.60 0.00 0.00 3.41
2609 6746 2.620115 AGAGTCATGCACAAGTGTTTGG 59.380 45.455 1.79 0.00 38.66 3.28
2610 6747 2.618241 GAGTCATGCACAAGTGTTTGGA 59.382 45.455 1.79 0.00 38.66 3.53
2736 6903 8.984891 TGTATTCATTTGTAAAGAATTGCCAG 57.015 30.769 0.00 0.00 34.19 4.85
2741 6908 9.474920 TTCATTTGTAAAGAATTGCCAGTAAAG 57.525 29.630 0.00 0.00 0.00 1.85
2832 7004 3.652869 TGGCCTGGAAGAAAGATATAGGG 59.347 47.826 3.32 0.00 34.07 3.53
2927 7099 0.962356 AAGTTTATGCGCTGCTGGCT 60.962 50.000 9.73 0.00 39.13 4.75
2948 7120 3.212682 CGCTCGCTGAGGCCTCTA 61.213 66.667 32.28 17.97 34.44 2.43
2997 7169 4.043200 GCTGGCGTTGGTTGGCTC 62.043 66.667 0.00 0.00 0.00 4.70
3043 7218 3.842923 CTCCTCCCGTGCGCATCT 61.843 66.667 15.91 0.00 0.00 2.90
3090 7265 1.663074 GCGCACTCTCGATCCCATC 60.663 63.158 0.30 0.00 0.00 3.51
3125 7300 2.418910 ATGACCGAGCTCCTCACCG 61.419 63.158 8.47 0.00 0.00 4.94
3132 7307 4.021925 GCTCCTCACCGTTGGCCT 62.022 66.667 3.32 0.00 0.00 5.19
3133 7308 2.266055 CTCCTCACCGTTGGCCTC 59.734 66.667 3.32 0.00 0.00 4.70
3134 7309 2.203788 TCCTCACCGTTGGCCTCT 60.204 61.111 3.32 0.00 0.00 3.69
3135 7310 2.232298 CTCCTCACCGTTGGCCTCTC 62.232 65.000 3.32 0.00 0.00 3.20
3136 7311 2.266055 CTCACCGTTGGCCTCTCC 59.734 66.667 3.32 0.00 0.00 3.71
3137 7312 2.525629 TCACCGTTGGCCTCTCCA 60.526 61.111 3.32 0.00 44.85 3.86
3140 7315 1.026718 CACCGTTGGCCTCTCCATTC 61.027 60.000 3.32 0.00 46.04 2.67
3141 7316 1.815421 CCGTTGGCCTCTCCATTCG 60.815 63.158 3.32 0.00 46.04 3.34
3142 7317 2.464459 CGTTGGCCTCTCCATTCGC 61.464 63.158 3.32 0.00 46.04 4.70
3143 7318 1.377202 GTTGGCCTCTCCATTCGCA 60.377 57.895 3.32 0.00 46.04 5.10
3144 7319 1.377202 TTGGCCTCTCCATTCGCAC 60.377 57.895 3.32 0.00 46.04 5.34
3145 7320 2.123248 TTGGCCTCTCCATTCGCACA 62.123 55.000 3.32 0.00 46.04 4.57
3146 7321 1.153086 GGCCTCTCCATTCGCACAT 60.153 57.895 0.00 0.00 34.01 3.21
3147 7322 0.749454 GGCCTCTCCATTCGCACATT 60.749 55.000 0.00 0.00 34.01 2.71
3148 7323 0.659957 GCCTCTCCATTCGCACATTC 59.340 55.000 0.00 0.00 0.00 2.67
3149 7324 1.745141 GCCTCTCCATTCGCACATTCT 60.745 52.381 0.00 0.00 0.00 2.40
3150 7325 2.636830 CCTCTCCATTCGCACATTCTT 58.363 47.619 0.00 0.00 0.00 2.52
3151 7326 2.611292 CCTCTCCATTCGCACATTCTTC 59.389 50.000 0.00 0.00 0.00 2.87
3152 7327 2.611292 CTCTCCATTCGCACATTCTTCC 59.389 50.000 0.00 0.00 0.00 3.46
3153 7328 1.672881 CTCCATTCGCACATTCTTCCC 59.327 52.381 0.00 0.00 0.00 3.97
3154 7329 0.378257 CCATTCGCACATTCTTCCCG 59.622 55.000 0.00 0.00 0.00 5.14
3155 7330 0.378257 CATTCGCACATTCTTCCCGG 59.622 55.000 0.00 0.00 0.00 5.73
3156 7331 1.376609 ATTCGCACATTCTTCCCGGC 61.377 55.000 0.00 0.00 0.00 6.13
3157 7332 3.508840 CGCACATTCTTCCCGGCC 61.509 66.667 0.00 0.00 0.00 6.13
3158 7333 2.361104 GCACATTCTTCCCGGCCA 60.361 61.111 2.24 0.00 0.00 5.36
3159 7334 1.976474 GCACATTCTTCCCGGCCAA 60.976 57.895 2.24 0.00 0.00 4.52
3160 7335 1.531739 GCACATTCTTCCCGGCCAAA 61.532 55.000 2.24 0.00 0.00 3.28
3161 7336 0.965439 CACATTCTTCCCGGCCAAAA 59.035 50.000 2.24 0.00 0.00 2.44
3162 7337 1.067635 CACATTCTTCCCGGCCAAAAG 60.068 52.381 2.24 2.71 0.00 2.27
3163 7338 1.256812 CATTCTTCCCGGCCAAAAGT 58.743 50.000 2.24 0.00 0.00 2.66
3164 7339 1.618343 CATTCTTCCCGGCCAAAAGTT 59.382 47.619 2.24 0.00 0.00 2.66
3165 7340 1.783071 TTCTTCCCGGCCAAAAGTTT 58.217 45.000 2.24 0.00 0.00 2.66
3166 7341 1.324383 TCTTCCCGGCCAAAAGTTTC 58.676 50.000 2.24 0.00 0.00 2.78
3205 7380 3.007940 TGCCACTACTTTCATACAGCTGT 59.992 43.478 25.12 25.12 0.00 4.40
3213 7388 2.887568 ATACAGCTGTGCGCGCTC 60.888 61.111 33.29 29.03 45.59 5.03
3229 7404 1.300620 CTCGCCGTGGTGTTCTTGA 60.301 57.895 0.00 0.00 0.00 3.02
3237 7412 1.865340 GTGGTGTTCTTGACGGACTTC 59.135 52.381 0.00 0.00 0.00 3.01
3247 7422 1.067060 TGACGGACTTCGGATGCATAG 59.933 52.381 0.00 0.00 44.45 2.23
3248 7423 0.249489 ACGGACTTCGGATGCATAGC 60.249 55.000 0.00 0.00 44.45 2.97
3249 7424 1.278172 CGGACTTCGGATGCATAGCG 61.278 60.000 0.00 0.00 34.75 4.26
3278 7453 1.905512 GACTATGCCGGGTTCCTGT 59.094 57.895 2.18 0.00 0.00 4.00
3290 7465 1.680249 GGTTCCTGTGATCTTGGAGCC 60.680 57.143 15.02 15.02 42.40 4.70
3291 7466 0.250234 TTCCTGTGATCTTGGAGCCG 59.750 55.000 0.00 0.00 0.00 5.52
3309 7484 4.873129 CGCCGTCATCCCCGACAG 62.873 72.222 0.00 0.00 35.54 3.51
3356 7531 7.283329 CCATTACTGGAAAAAGCTCTATAGGT 58.717 38.462 0.00 0.00 46.37 3.08
3357 7532 7.227512 CCATTACTGGAAAAAGCTCTATAGGTG 59.772 40.741 0.00 0.00 46.37 4.00
3387 7562 2.440539 AGTGACGAACAGGACATGTC 57.559 50.000 17.91 17.91 43.00 3.06
3394 7569 0.110486 AACAGGACATGTCACCCACC 59.890 55.000 26.47 9.47 43.00 4.61
3396 7571 0.606401 CAGGACATGTCACCCACCAC 60.606 60.000 26.47 7.23 0.00 4.16
3413 7588 5.169295 CCACCACGGTTACTTTTTCAAAAA 58.831 37.500 0.00 0.00 0.00 1.94
3508 7683 3.802685 CGCAGTTAGGCTCCTACAAATAC 59.197 47.826 0.00 0.00 0.00 1.89
3516 7691 2.803492 GCTCCTACAAATACTCCCGCTG 60.803 54.545 0.00 0.00 0.00 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
584 640 1.027357 CCAGACCATGGTTATGCTGC 58.973 55.000 20.85 3.87 44.91 5.25
598 654 5.181433 GTGGAGGAAAATACTGAAACCAGAC 59.819 44.000 0.00 0.00 35.67 3.51
719 791 1.985473 AATGTCTTGCCTTGACAGCA 58.015 45.000 8.93 0.00 45.88 4.41
762 835 5.940470 GGATTGTACATATCAGGATGGTTCC 59.060 44.000 15.37 0.00 42.96 3.62
855 2060 6.072452 GGCATAAAGGCAAGGAGATAATGTAC 60.072 42.308 0.00 0.00 43.51 2.90
887 2092 9.961265 TGCTACGTATATATAGGCATAATTCAC 57.039 33.333 11.48 0.00 0.00 3.18
1317 2538 0.041684 TGGAGCAGAGGACCATGAGA 59.958 55.000 0.00 0.00 0.00 3.27
1383 2604 1.359848 AGCGGAAGAAACATAGCGTG 58.640 50.000 0.00 0.00 0.00 5.34
1428 2649 2.052690 GGCGCTCAGAGGGTAGTCA 61.053 63.158 15.53 0.00 0.00 3.41
1449 2670 5.276461 TGTTAGCATACTCCGACATGATT 57.724 39.130 0.00 0.00 0.00 2.57
1548 2769 2.131281 ATGCAGACGAGACGATGATG 57.869 50.000 0.00 0.00 0.00 3.07
1611 2832 3.329889 TCTGGGCCAATGGACGCT 61.330 61.111 8.04 0.00 0.00 5.07
1626 2847 2.341101 CCACACGTAGTCGGCCTCT 61.341 63.158 0.00 1.36 41.61 3.69
1836 3057 2.770048 CGGGAGAAGAGGCCCCAT 60.770 66.667 0.00 0.00 41.50 4.00
1869 3090 2.449031 CTAGCAAGTGCACCCCGTGA 62.449 60.000 14.63 0.00 45.16 4.35
1983 3204 3.635373 CCAATGCATTCATAGTCTTGGCT 59.365 43.478 9.53 0.00 31.46 4.75
2121 3342 3.721050 TGGTCATCATGGTGAATCCCATA 59.279 43.478 11.02 0.00 43.46 2.74
2250 4928 2.594592 AAGGTCGTGCTGTTGGGC 60.595 61.111 0.00 0.00 0.00 5.36
2262 4940 1.885871 GGCTGGCACAATGAAGGTC 59.114 57.895 0.00 0.00 38.70 3.85
2382 6517 1.301293 GGGCTTCTTCTGGTCCTGG 59.699 63.158 0.00 0.00 0.00 4.45
2409 6544 1.179152 TGCCGATTCCTCGTGAGTAA 58.821 50.000 0.00 0.00 43.49 2.24
2418 6553 2.438254 TTGCGCATGCCGATTCCT 60.438 55.556 12.75 0.00 41.78 3.36
2609 6746 5.580911 AAAGAAACGCTGCAATGAAAATC 57.419 34.783 0.00 0.00 0.00 2.17
2610 6747 5.754890 AGAAAAGAAACGCTGCAATGAAAAT 59.245 32.000 0.00 0.00 0.00 1.82
2736 6903 8.455682 TCAAATCAAATGAACGGGATACTTTAC 58.544 33.333 0.00 0.00 0.00 2.01
2741 6908 6.918022 GGAATCAAATCAAATGAACGGGATAC 59.082 38.462 0.00 0.00 0.00 2.24
2874 7046 6.892658 TGATGTGGTAAGTAATTTGCTTGT 57.107 33.333 9.67 0.00 0.00 3.16
2878 7050 6.756542 GGGATTTGATGTGGTAAGTAATTTGC 59.243 38.462 0.00 0.00 0.00 3.68
2883 7055 5.789574 AGGGGATTTGATGTGGTAAGTAA 57.210 39.130 0.00 0.00 0.00 2.24
2884 7056 5.727279 TGTAGGGGATTTGATGTGGTAAGTA 59.273 40.000 0.00 0.00 0.00 2.24
2885 7057 4.538490 TGTAGGGGATTTGATGTGGTAAGT 59.462 41.667 0.00 0.00 0.00 2.24
2886 7058 5.110814 TGTAGGGGATTTGATGTGGTAAG 57.889 43.478 0.00 0.00 0.00 2.34
2979 7151 4.892965 AGCCAACCAACGCCAGCA 62.893 61.111 0.00 0.00 0.00 4.41
3043 7218 2.749839 GCGTGGGCCTGCATGTTA 60.750 61.111 15.09 0.00 0.00 2.41
3078 7253 1.838846 GGGCCAGATGGGATCGAGA 60.839 63.158 4.39 0.00 40.01 4.04
3132 7307 2.632377 GGAAGAATGTGCGAATGGAGA 58.368 47.619 0.00 0.00 0.00 3.71
3133 7308 1.672881 GGGAAGAATGTGCGAATGGAG 59.327 52.381 0.00 0.00 0.00 3.86
3134 7309 1.750193 GGGAAGAATGTGCGAATGGA 58.250 50.000 0.00 0.00 0.00 3.41
3135 7310 0.378257 CGGGAAGAATGTGCGAATGG 59.622 55.000 0.00 0.00 0.00 3.16
3136 7311 0.378257 CCGGGAAGAATGTGCGAATG 59.622 55.000 0.00 0.00 0.00 2.67
3137 7312 1.376609 GCCGGGAAGAATGTGCGAAT 61.377 55.000 2.18 0.00 0.00 3.34
3140 7315 3.508840 GGCCGGGAAGAATGTGCG 61.509 66.667 2.18 0.00 0.00 5.34
3141 7316 1.531739 TTTGGCCGGGAAGAATGTGC 61.532 55.000 2.18 0.00 0.00 4.57
3142 7317 0.965439 TTTTGGCCGGGAAGAATGTG 59.035 50.000 2.18 0.00 0.00 3.21
3143 7318 1.256812 CTTTTGGCCGGGAAGAATGT 58.743 50.000 2.18 0.00 0.00 2.71
3144 7319 1.256812 ACTTTTGGCCGGGAAGAATG 58.743 50.000 16.61 2.64 0.00 2.67
3145 7320 2.009681 AACTTTTGGCCGGGAAGAAT 57.990 45.000 16.61 5.19 0.00 2.40
3146 7321 1.684450 GAAACTTTTGGCCGGGAAGAA 59.316 47.619 16.61 0.00 0.00 2.52
3147 7322 1.133606 AGAAACTTTTGGCCGGGAAGA 60.134 47.619 16.61 0.00 0.00 2.87
3148 7323 1.328279 AGAAACTTTTGGCCGGGAAG 58.672 50.000 2.18 4.56 0.00 3.46
3149 7324 1.684450 GAAGAAACTTTTGGCCGGGAA 59.316 47.619 2.18 0.00 0.00 3.97
3150 7325 1.324383 GAAGAAACTTTTGGCCGGGA 58.676 50.000 2.18 0.00 0.00 5.14
3151 7326 0.317160 GGAAGAAACTTTTGGCCGGG 59.683 55.000 2.18 0.00 0.00 5.73
3152 7327 1.328279 AGGAAGAAACTTTTGGCCGG 58.672 50.000 0.00 0.00 0.00 6.13
3153 7328 2.360801 TCAAGGAAGAAACTTTTGGCCG 59.639 45.455 0.00 0.00 0.00 6.13
3154 7329 4.400529 TTCAAGGAAGAAACTTTTGGCC 57.599 40.909 0.00 0.00 0.00 5.36
3155 7330 5.466728 GGAATTCAAGGAAGAAACTTTTGGC 59.533 40.000 7.93 0.00 0.00 4.52
3156 7331 5.991606 GGGAATTCAAGGAAGAAACTTTTGG 59.008 40.000 7.93 0.00 0.00 3.28
3157 7332 6.479990 GTGGGAATTCAAGGAAGAAACTTTTG 59.520 38.462 7.93 0.00 0.00 2.44
3158 7333 6.384015 AGTGGGAATTCAAGGAAGAAACTTTT 59.616 34.615 7.93 0.00 0.00 2.27
3159 7334 5.899547 AGTGGGAATTCAAGGAAGAAACTTT 59.100 36.000 7.93 0.00 0.00 2.66
3160 7335 5.302823 CAGTGGGAATTCAAGGAAGAAACTT 59.697 40.000 7.93 0.00 0.00 2.66
3161 7336 4.829492 CAGTGGGAATTCAAGGAAGAAACT 59.171 41.667 7.93 0.00 0.00 2.66
3162 7337 4.559502 GCAGTGGGAATTCAAGGAAGAAAC 60.560 45.833 7.93 0.00 0.00 2.78
3163 7338 3.573967 GCAGTGGGAATTCAAGGAAGAAA 59.426 43.478 7.93 0.00 0.00 2.52
3164 7339 3.157087 GCAGTGGGAATTCAAGGAAGAA 58.843 45.455 7.93 0.00 0.00 2.52
3165 7340 2.555227 GGCAGTGGGAATTCAAGGAAGA 60.555 50.000 7.93 0.00 0.00 2.87
3166 7341 1.821136 GGCAGTGGGAATTCAAGGAAG 59.179 52.381 7.93 0.00 0.00 3.46
3213 7388 2.935955 GTCAAGAACACCACGGCG 59.064 61.111 4.80 4.80 0.00 6.46
3229 7404 0.249489 GCTATGCATCCGAAGTCCGT 60.249 55.000 0.19 0.00 36.31 4.69
3262 7437 0.469917 ATCACAGGAACCCGGCATAG 59.530 55.000 0.00 0.00 0.00 2.23
3278 7453 4.838152 GGCGCGGCTCCAAGATCA 62.838 66.667 27.05 0.00 0.00 2.92
3305 7480 1.079336 GGACGGGGTACTTGCTGTC 60.079 63.158 0.00 0.00 0.00 3.51
3309 7484 3.654173 GACCGGACGGGGTACTTGC 62.654 68.421 9.46 0.00 41.40 4.01
3356 7531 7.972277 GTCCTGTTCGTCACTATTTATAGTTCA 59.028 37.037 0.00 0.00 41.44 3.18
3357 7532 7.972277 TGTCCTGTTCGTCACTATTTATAGTTC 59.028 37.037 0.00 0.00 41.44 3.01
3375 7550 0.110486 GGTGGGTGACATGTCCTGTT 59.890 55.000 22.85 0.00 38.54 3.16
3376 7551 1.059584 TGGTGGGTGACATGTCCTGT 61.060 55.000 22.85 0.00 42.15 4.00
3387 7562 1.682740 AAAAGTAACCGTGGTGGGTG 58.317 50.000 0.00 0.00 38.98 4.61
3475 7650 2.449031 CTAACTGCGGTGGGTGCTGA 62.449 60.000 0.00 0.00 35.53 4.26
3484 7659 0.613853 TGTAGGAGCCTAACTGCGGT 60.614 55.000 0.00 0.00 42.62 5.68
3516 7691 1.066430 TCGCCACTACAGTTTCCATCC 60.066 52.381 0.00 0.00 0.00 3.51
3542 7717 2.017559 CTAGTGGCGGGCACTAGGTC 62.018 65.000 41.83 18.49 44.95 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.