Multiple sequence alignment - TraesCS4B01G316400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G316400 chr4B 100.000 3827 0 0 1 3827 605934060 605930234 0.000000e+00 7068.0
1 TraesCS4B01G316400 chr4B 86.079 431 42 6 2614 3031 605884041 605883616 7.540000e-122 448.0
2 TraesCS4B01G316400 chr4D 90.109 1658 67 43 928 2550 479346781 479345186 0.000000e+00 2063.0
3 TraesCS4B01G316400 chr4D 90.355 705 41 12 1 691 479347813 479347122 0.000000e+00 900.0
4 TraesCS4B01G316400 chr4D 87.810 443 23 10 2608 3031 479345164 479344734 1.240000e-134 490.0
5 TraesCS4B01G316400 chr4D 85.789 190 13 6 715 892 479347037 479346850 5.050000e-44 189.0
6 TraesCS4B01G316400 chr4D 91.139 79 6 1 3019 3096 479344716 479344638 5.230000e-19 106.0
7 TraesCS4B01G316400 chr4D 88.235 51 6 0 3273 3323 445388281 445388231 1.150000e-05 62.1
8 TraesCS4B01G316400 chr4A 84.760 1916 167 73 928 2768 685743053 685741188 0.000000e+00 1805.0
9 TraesCS4B01G316400 chr4A 88.450 658 60 14 1 652 685744161 685743514 0.000000e+00 780.0
10 TraesCS4B01G316400 chr4A 86.792 212 25 3 3474 3683 722192545 722192335 2.300000e-57 233.0
11 TraesCS4B01G316400 chr4A 84.091 176 25 3 2888 3062 685739900 685739727 2.360000e-37 167.0
12 TraesCS4B01G316400 chr4A 95.349 43 2 0 3055 3097 685738131 685738089 6.860000e-08 69.4
13 TraesCS4B01G316400 chr4A 93.182 44 3 0 3280 3323 75881283 75881326 8.870000e-07 65.8
14 TraesCS4B01G316400 chr6B 97.835 508 7 4 3282 3788 377938986 377939490 0.000000e+00 874.0
15 TraesCS4B01G316400 chr6B 96.000 50 1 1 3779 3827 377939511 377939560 3.170000e-11 80.5
16 TraesCS4B01G316400 chr6B 95.349 43 2 0 3270 3312 708279486 708279528 6.860000e-08 69.4
17 TraesCS4B01G316400 chr6B 95.238 42 2 0 3282 3323 72672091 72672050 2.470000e-07 67.6
18 TraesCS4B01G316400 chr3B 85.403 459 43 15 3347 3787 739253676 739254128 4.510000e-124 455.0
19 TraesCS4B01G316400 chr3A 85.153 458 46 13 3347 3787 362666155 362666607 2.100000e-122 449.0
20 TraesCS4B01G316400 chr1A 84.934 458 47 13 3347 3787 101769262 101768810 9.760000e-121 444.0
21 TraesCS4B01G316400 chr5D 84.935 385 42 10 3347 3718 2109142 2109523 3.610000e-100 375.0
22 TraesCS4B01G316400 chr5D 88.608 79 7 2 3709 3787 2115755 2115831 1.130000e-15 95.3
23 TraesCS4B01G316400 chr5D 97.561 41 0 1 208 248 539958356 539958317 6.860000e-08 69.4
24 TraesCS4B01G316400 chr2A 82.857 350 34 12 3454 3787 28445575 28445236 1.340000e-74 291.0
25 TraesCS4B01G316400 chr7B 89.855 69 5 1 3282 3348 531818056 531818124 1.890000e-13 87.9
26 TraesCS4B01G316400 chr5B 95.238 42 2 0 3279 3320 367466311 367466352 2.470000e-07 67.6
27 TraesCS4B01G316400 chr5A 88.462 52 6 0 3282 3333 709157997 709157946 3.190000e-06 63.9
28 TraesCS4B01G316400 chr1B 93.023 43 3 0 3281 3323 217766587 217766545 3.190000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G316400 chr4B 605930234 605934060 3826 True 7068.00 7068 100.0000 1 3827 1 chr4B.!!$R2 3826
1 TraesCS4B01G316400 chr4D 479344638 479347813 3175 True 749.60 2063 89.0404 1 3096 5 chr4D.!!$R2 3095
2 TraesCS4B01G316400 chr4A 685738089 685744161 6072 True 705.35 1805 88.1625 1 3097 4 chr4A.!!$R2 3096
3 TraesCS4B01G316400 chr6B 377938986 377939560 574 False 477.25 874 96.9175 3282 3827 2 chr6B.!!$F2 545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
897 1144 0.251033 ACATCCATGCTGCACACACT 60.251 50.0 3.57 0.00 0.0 3.55 F
1828 2173 0.037326 ACCACCATGACGCTGTACAG 60.037 55.0 18.93 18.93 0.0 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2799 3214 0.034896 TCGCCTTGGTCTGTTCTTCC 59.965 55.0 0.00 0.0 0.0 3.46 R
3110 6380 0.173935 ACGATATGTTCACCCGCGAA 59.826 50.0 8.23 0.0 0.0 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 2.751806 CCTTCCTGCAATGGAAAGAGAC 59.248 50.000 8.62 0.00 44.49 3.36
96 97 4.022589 CGGTGGAAAGTGAGTAGTGACTAA 60.023 45.833 0.00 0.00 35.45 2.24
144 145 1.697982 GGGTTTGAGTAGTGGGTGTCT 59.302 52.381 0.00 0.00 0.00 3.41
170 171 3.135712 TGAAGCTCACTCTGGGTGTTTTA 59.864 43.478 7.67 0.00 45.50 1.52
181 182 8.665685 CACTCTGGGTGTTTTATAGTAATCAAC 58.334 37.037 0.00 0.00 40.79 3.18
218 220 4.899457 TCCCTCTGTCTCTAGTGTCAAAAA 59.101 41.667 0.00 0.00 0.00 1.94
365 376 2.688446 GGGCCCTGCTATTTAGTGTTTC 59.312 50.000 17.04 0.00 0.00 2.78
424 436 0.323360 GGGGTCATTAGGCACTTGCA 60.323 55.000 3.15 0.00 44.36 4.08
454 466 7.272978 TCTCCTGTCCACTAGTTAAATTATGC 58.727 38.462 0.00 0.00 0.00 3.14
511 523 5.130311 GCTCTCCTTAGAAAGAGAAAGGGAT 59.870 44.000 13.33 0.00 41.28 3.85
519 531 3.726837 AAGAGAAAGGGATAGGGGCTA 57.273 47.619 0.00 0.00 0.00 3.93
567 585 2.738643 CGTGACACCTGAACAGACAAGT 60.739 50.000 0.00 0.00 0.00 3.16
570 588 1.754803 ACACCTGAACAGACAAGTCGA 59.245 47.619 3.19 0.00 34.09 4.20
571 589 2.128035 CACCTGAACAGACAAGTCGAC 58.872 52.381 7.70 7.70 34.09 4.20
573 591 0.778815 CTGAACAGACAAGTCGACGC 59.221 55.000 10.46 1.26 34.09 5.19
574 592 0.596600 TGAACAGACAAGTCGACGCC 60.597 55.000 10.46 0.72 34.09 5.68
575 593 1.606350 GAACAGACAAGTCGACGCCG 61.606 60.000 10.46 5.13 34.09 6.46
576 594 2.067091 AACAGACAAGTCGACGCCGA 62.067 55.000 10.46 0.00 43.35 5.54
584 602 3.296836 TCGACGCCGAACTTGGGA 61.297 61.111 0.00 0.00 42.51 4.37
585 603 3.110178 CGACGCCGAACTTGGGAC 61.110 66.667 0.00 0.00 38.22 4.46
586 604 2.342648 GACGCCGAACTTGGGACT 59.657 61.111 0.00 0.00 0.00 3.85
587 605 2.027625 GACGCCGAACTTGGGACTG 61.028 63.158 0.00 0.00 0.00 3.51
588 606 2.742372 CGCCGAACTTGGGACTGG 60.742 66.667 0.00 0.00 0.00 4.00
589 607 3.056328 GCCGAACTTGGGACTGGC 61.056 66.667 0.00 0.00 35.04 4.85
633 655 1.478916 TCATCCGGTGTGCGAGAAATA 59.521 47.619 0.00 0.00 0.00 1.40
640 662 2.029244 GGTGTGCGAGAAATATGTCACG 59.971 50.000 8.23 8.23 35.11 4.35
648 670 4.680110 CGAGAAATATGTCACGGATGGTAC 59.320 45.833 4.93 0.00 0.00 3.34
653 675 5.717078 ATATGTCACGGATGGTACGTTAT 57.283 39.130 0.00 0.00 43.58 1.89
669 691 4.777463 ACGTTATGTAGCAGGGCTATTTT 58.223 39.130 0.78 0.00 43.30 1.82
670 692 4.814771 ACGTTATGTAGCAGGGCTATTTTC 59.185 41.667 0.78 0.00 43.30 2.29
671 693 5.057149 CGTTATGTAGCAGGGCTATTTTCT 58.943 41.667 0.78 0.00 43.30 2.52
672 694 5.050091 CGTTATGTAGCAGGGCTATTTTCTG 60.050 44.000 0.78 0.00 43.30 3.02
674 696 4.568072 TGTAGCAGGGCTATTTTCTGAA 57.432 40.909 0.78 0.00 43.30 3.02
675 697 4.261801 TGTAGCAGGGCTATTTTCTGAAC 58.738 43.478 0.78 0.00 43.30 3.18
676 698 2.359900 AGCAGGGCTATTTTCTGAACG 58.640 47.619 0.00 0.00 36.99 3.95
696 755 2.411069 CGTGACAACTCTCTCTGCATTG 59.589 50.000 0.00 0.00 0.00 2.82
701 760 4.190001 ACAACTCTCTCTGCATTGCATAG 58.810 43.478 12.53 14.42 38.13 2.23
731 937 5.243426 TCTCACTACTGTTTTGTTTTGCC 57.757 39.130 0.00 0.00 0.00 4.52
753 959 4.414852 CTGTGTTGTGTTCTGAAACAAGG 58.585 43.478 14.21 1.20 46.56 3.61
829 1069 0.312729 GCACTAACCACCAAAACCGG 59.687 55.000 0.00 0.00 0.00 5.28
852 1092 1.968017 ATCGGTGCTGCCACTGTTG 60.968 57.895 0.00 0.00 46.30 3.33
863 1103 2.159310 TGCCACTGTTGTTAGTGCAAAC 60.159 45.455 0.00 0.00 45.21 2.93
868 1108 4.024048 CACTGTTGTTAGTGCAAACCTAGG 60.024 45.833 7.41 7.41 41.31 3.02
889 1136 1.514087 GGGCACAACATCCATGCTG 59.486 57.895 0.00 0.00 39.38 4.41
894 1141 0.599558 ACAACATCCATGCTGCACAC 59.400 50.000 3.57 0.00 0.00 3.82
897 1144 0.251033 ACATCCATGCTGCACACACT 60.251 50.000 3.57 0.00 0.00 3.55
916 1206 2.202298 GTCAAATTCCACGCGCCG 60.202 61.111 5.73 0.00 0.00 6.46
917 1207 4.096558 TCAAATTCCACGCGCCGC 62.097 61.111 5.73 0.00 0.00 6.53
918 1208 4.101790 CAAATTCCACGCGCCGCT 62.102 61.111 5.73 0.00 0.00 5.52
919 1209 4.101790 AAATTCCACGCGCCGCTG 62.102 61.111 5.73 4.47 0.00 5.18
959 1249 1.338105 TGGAGCTGTTTCAGACGGATG 60.338 52.381 0.00 0.00 36.72 3.51
961 1251 2.094182 GGAGCTGTTTCAGACGGATGTA 60.094 50.000 0.00 0.00 36.72 2.29
962 1252 3.430929 GGAGCTGTTTCAGACGGATGTAT 60.431 47.826 0.00 0.00 36.72 2.29
963 1253 4.202121 GGAGCTGTTTCAGACGGATGTATA 60.202 45.833 0.00 0.00 36.72 1.47
964 1254 5.509840 GGAGCTGTTTCAGACGGATGTATAT 60.510 44.000 0.00 0.00 36.72 0.86
965 1255 6.294564 GGAGCTGTTTCAGACGGATGTATATA 60.295 42.308 0.00 0.00 36.72 0.86
1059 1349 2.762745 CTATATAACCCACGGCACCAC 58.237 52.381 0.00 0.00 0.00 4.16
1060 1350 0.179067 ATATAACCCACGGCACCACG 60.179 55.000 0.00 0.00 40.31 4.94
1061 1351 2.241479 TATAACCCACGGCACCACGG 62.241 60.000 0.00 0.00 38.39 4.94
1089 1384 3.557595 CCTTTATAAAGACAGGCTCTGCG 59.442 47.826 23.95 1.80 38.28 5.18
1358 1674 3.488890 GCCTACTACCACGAGAAGTAAGC 60.489 52.174 0.00 0.00 0.00 3.09
1359 1675 3.946558 CCTACTACCACGAGAAGTAAGCT 59.053 47.826 0.00 0.00 0.00 3.74
1360 1676 4.035441 CCTACTACCACGAGAAGTAAGCTC 59.965 50.000 0.00 0.00 0.00 4.09
1361 1677 3.418995 ACTACCACGAGAAGTAAGCTCA 58.581 45.455 0.00 0.00 32.67 4.26
1362 1678 4.017808 ACTACCACGAGAAGTAAGCTCAT 58.982 43.478 0.00 0.00 32.67 2.90
1364 1680 5.828859 ACTACCACGAGAAGTAAGCTCATAT 59.171 40.000 0.00 0.00 32.67 1.78
1365 1681 4.938080 ACCACGAGAAGTAAGCTCATATG 58.062 43.478 0.00 0.00 32.67 1.78
1367 1683 5.105310 ACCACGAGAAGTAAGCTCATATGTT 60.105 40.000 1.90 0.00 32.67 2.71
1368 1684 5.460419 CCACGAGAAGTAAGCTCATATGTTC 59.540 44.000 1.90 0.00 32.67 3.18
1394 1729 3.069586 ACACCACGAGATTCAGACTTTGA 59.930 43.478 0.00 0.00 0.00 2.69
1398 1733 3.362237 CACGAGATTCAGACTTTGACGAC 59.638 47.826 0.00 0.00 34.94 4.34
1399 1734 2.590276 CGAGATTCAGACTTTGACGACG 59.410 50.000 0.00 0.00 34.94 5.12
1400 1735 2.917971 GAGATTCAGACTTTGACGACGG 59.082 50.000 0.00 0.00 34.94 4.79
1404 1739 3.482722 TCAGACTTTGACGACGGTATC 57.517 47.619 0.00 0.00 0.00 2.24
1406 1741 2.915463 CAGACTTTGACGACGGTATCAC 59.085 50.000 0.00 0.00 0.00 3.06
1416 1751 3.227147 CGACGGTATCACGATGAATCTC 58.773 50.000 0.00 0.00 37.61 2.75
1421 1756 5.298527 ACGGTATCACGATGAATCTCTGTTA 59.701 40.000 0.00 0.00 37.61 2.41
1425 1760 9.692749 GGTATCACGATGAATCTCTGTTAATTA 57.307 33.333 0.00 0.00 0.00 1.40
1427 1762 8.594881 ATCACGATGAATCTCTGTTAATTACC 57.405 34.615 0.00 0.00 0.00 2.85
1428 1763 7.782049 TCACGATGAATCTCTGTTAATTACCT 58.218 34.615 0.00 0.00 0.00 3.08
1429 1764 8.258007 TCACGATGAATCTCTGTTAATTACCTT 58.742 33.333 0.00 0.00 0.00 3.50
1430 1765 8.331022 CACGATGAATCTCTGTTAATTACCTTG 58.669 37.037 0.00 0.00 0.00 3.61
1431 1766 7.011482 ACGATGAATCTCTGTTAATTACCTTGC 59.989 37.037 0.00 0.00 0.00 4.01
1432 1767 7.225538 CGATGAATCTCTGTTAATTACCTTGCT 59.774 37.037 0.00 0.00 0.00 3.91
1433 1768 7.849804 TGAATCTCTGTTAATTACCTTGCTC 57.150 36.000 0.00 0.00 0.00 4.26
1434 1769 7.394016 TGAATCTCTGTTAATTACCTTGCTCA 58.606 34.615 0.00 0.00 0.00 4.26
1435 1770 8.049117 TGAATCTCTGTTAATTACCTTGCTCAT 58.951 33.333 0.00 0.00 0.00 2.90
1436 1771 8.814038 AATCTCTGTTAATTACCTTGCTCATT 57.186 30.769 0.00 0.00 0.00 2.57
1437 1772 7.849804 TCTCTGTTAATTACCTTGCTCATTC 57.150 36.000 0.00 0.00 0.00 2.67
1438 1773 7.624549 TCTCTGTTAATTACCTTGCTCATTCT 58.375 34.615 0.00 0.00 0.00 2.40
1439 1774 7.550551 TCTCTGTTAATTACCTTGCTCATTCTG 59.449 37.037 0.00 0.00 0.00 3.02
1440 1775 6.094048 TCTGTTAATTACCTTGCTCATTCTGC 59.906 38.462 0.00 0.00 0.00 4.26
1441 1776 5.945784 TGTTAATTACCTTGCTCATTCTGCT 59.054 36.000 0.00 0.00 0.00 4.24
1442 1777 6.434028 TGTTAATTACCTTGCTCATTCTGCTT 59.566 34.615 0.00 0.00 0.00 3.91
1443 1778 5.573337 AATTACCTTGCTCATTCTGCTTC 57.427 39.130 0.00 0.00 0.00 3.86
1444 1779 1.446907 ACCTTGCTCATTCTGCTTCG 58.553 50.000 0.00 0.00 0.00 3.79
1445 1780 1.271054 ACCTTGCTCATTCTGCTTCGT 60.271 47.619 0.00 0.00 0.00 3.85
1446 1781 1.808945 CCTTGCTCATTCTGCTTCGTT 59.191 47.619 0.00 0.00 0.00 3.85
1447 1782 2.227388 CCTTGCTCATTCTGCTTCGTTT 59.773 45.455 0.00 0.00 0.00 3.60
1448 1783 3.304928 CCTTGCTCATTCTGCTTCGTTTT 60.305 43.478 0.00 0.00 0.00 2.43
1449 1784 3.272439 TGCTCATTCTGCTTCGTTTTG 57.728 42.857 0.00 0.00 0.00 2.44
1450 1785 2.618241 TGCTCATTCTGCTTCGTTTTGT 59.382 40.909 0.00 0.00 0.00 2.83
1451 1786 2.975851 GCTCATTCTGCTTCGTTTTGTG 59.024 45.455 0.00 0.00 0.00 3.33
1452 1787 2.975851 CTCATTCTGCTTCGTTTTGTGC 59.024 45.455 0.00 0.00 0.00 4.57
1482 1817 1.067295 AGTTGAGGCCCAAGATGACA 58.933 50.000 0.00 0.00 35.03 3.58
1531 1866 4.463186 TGCTCTCACTTCTAGGGTAAGAAC 59.537 45.833 0.00 0.00 32.18 3.01
1537 1872 7.455008 TCTCACTTCTAGGGTAAGAACAAGAAT 59.545 37.037 0.00 0.00 32.18 2.40
1549 1891 5.083533 AGAACAAGAATCGCTGAGAAGAT 57.916 39.130 0.00 0.00 0.00 2.40
1561 1903 6.924111 TCGCTGAGAAGATTGCATATATACA 58.076 36.000 0.00 0.00 0.00 2.29
1562 1904 7.550712 TCGCTGAGAAGATTGCATATATACAT 58.449 34.615 0.00 0.00 0.00 2.29
1563 1905 8.686334 TCGCTGAGAAGATTGCATATATACATA 58.314 33.333 0.00 0.00 0.00 2.29
1564 1906 8.750416 CGCTGAGAAGATTGCATATATACATAC 58.250 37.037 0.00 0.00 0.00 2.39
1565 1907 8.750416 GCTGAGAAGATTGCATATATACATACG 58.250 37.037 0.00 0.00 0.00 3.06
1566 1908 9.794685 CTGAGAAGATTGCATATATACATACGT 57.205 33.333 0.00 0.00 0.00 3.57
1574 1916 9.926751 ATTGCATATATACATACGTACGTAGAC 57.073 33.333 29.65 11.66 33.77 2.59
1575 1917 7.909267 TGCATATATACATACGTACGTAGACC 58.091 38.462 29.65 11.34 33.77 3.85
1585 1927 4.370917 ACGTACGTAGACCAACATTTGTT 58.629 39.130 21.41 0.00 39.12 2.83
1754 2099 2.105128 GAGATCGTGGACCTGCGG 59.895 66.667 8.69 0.00 0.00 5.69
1828 2173 0.037326 ACCACCATGACGCTGTACAG 60.037 55.000 18.93 18.93 0.00 2.74
1832 2177 1.153369 CATGACGCTGTACAGGGGG 60.153 63.158 34.83 21.10 44.60 5.40
1970 2318 0.179076 TCTGGTACATCATGCAGGCG 60.179 55.000 0.00 0.00 38.20 5.52
2159 2530 0.905337 CTTGTCTTCTCCCCCGTCCT 60.905 60.000 0.00 0.00 0.00 3.85
2160 2531 0.903454 TTGTCTTCTCCCCCGTCCTC 60.903 60.000 0.00 0.00 0.00 3.71
2161 2532 2.059190 GTCTTCTCCCCCGTCCTCC 61.059 68.421 0.00 0.00 0.00 4.30
2162 2533 2.038975 CTTCTCCCCCGTCCTCCA 59.961 66.667 0.00 0.00 0.00 3.86
2163 2534 1.383248 CTTCTCCCCCGTCCTCCAT 60.383 63.158 0.00 0.00 0.00 3.41
2164 2535 1.689233 TTCTCCCCCGTCCTCCATG 60.689 63.158 0.00 0.00 0.00 3.66
2166 2537 4.731853 TCCCCCGTCCTCCATGCA 62.732 66.667 0.00 0.00 0.00 3.96
2169 2540 4.082523 CCCGTCCTCCATGCACGT 62.083 66.667 0.00 0.00 0.00 4.49
2172 2543 2.094659 CGTCCTCCATGCACGTCAC 61.095 63.158 0.00 0.00 0.00 3.67
2173 2544 1.741770 GTCCTCCATGCACGTCACC 60.742 63.158 0.00 0.00 0.00 4.02
2174 2545 2.213513 TCCTCCATGCACGTCACCA 61.214 57.895 0.00 0.00 0.00 4.17
2175 2546 2.034879 CCTCCATGCACGTCACCAC 61.035 63.158 0.00 0.00 0.00 4.16
2181 2552 1.236616 ATGCACGTCACCACCATGTG 61.237 55.000 0.00 0.00 37.59 3.21
2205 2576 1.239296 GCCAGTGCTCATGAACTGCA 61.239 55.000 18.37 12.06 46.20 4.41
2221 2592 2.248140 CATGCGTGCACGAACGTT 59.752 55.556 41.19 15.40 45.32 3.99
2222 2593 2.068716 CATGCGTGCACGAACGTTG 61.069 57.895 41.19 23.33 45.32 4.10
2223 2594 2.530497 ATGCGTGCACGAACGTTGT 61.530 52.632 41.19 14.54 45.32 3.32
2224 2595 2.694175 ATGCGTGCACGAACGTTGTG 62.694 55.000 41.19 19.84 45.32 3.33
2225 2596 2.698616 CGTGCACGAACGTTGTGT 59.301 55.556 34.93 12.85 43.02 3.72
2226 2597 1.059681 CGTGCACGAACGTTGTGTT 59.940 52.632 34.93 0.00 45.61 3.32
2227 2598 0.519586 CGTGCACGAACGTTGTGTTT 60.520 50.000 34.93 0.00 42.09 2.83
2293 2664 3.391382 ACGGAGAAGAAGGGGCCG 61.391 66.667 0.00 0.00 46.83 6.13
2386 2757 4.723309 AGAACCTATACGTCGGAAGGTAT 58.277 43.478 13.68 4.02 41.51 2.73
2387 2758 4.518211 AGAACCTATACGTCGGAAGGTATG 59.482 45.833 13.68 1.84 41.51 2.39
2388 2759 3.825328 ACCTATACGTCGGAAGGTATGT 58.175 45.455 12.18 2.30 40.57 2.29
2389 2760 4.973168 ACCTATACGTCGGAAGGTATGTA 58.027 43.478 12.18 0.00 40.57 2.29
2390 2761 4.757149 ACCTATACGTCGGAAGGTATGTAC 59.243 45.833 12.18 0.00 40.57 2.90
2391 2762 4.999950 CCTATACGTCGGAAGGTATGTACT 59.000 45.833 11.26 0.00 37.14 2.73
2392 2763 5.121454 CCTATACGTCGGAAGGTATGTACTC 59.879 48.000 11.26 0.00 37.14 2.59
2393 2764 2.019984 ACGTCGGAAGGTATGTACTCC 58.980 52.381 0.00 0.00 0.00 3.85
2394 2765 2.295885 CGTCGGAAGGTATGTACTCCT 58.704 52.381 0.00 0.00 35.34 3.69
2395 2766 3.118261 ACGTCGGAAGGTATGTACTCCTA 60.118 47.826 0.00 0.00 33.27 2.94
2444 2829 2.414559 CCCGCTGTTGCTCAACTAAATG 60.415 50.000 13.16 0.87 41.67 2.32
2482 2867 3.345808 CACGGCAACCTGGACACG 61.346 66.667 0.00 1.91 0.00 4.49
2488 2873 0.602638 GCAACCTGGACACGACATGA 60.603 55.000 0.00 0.00 0.00 3.07
2506 2891 3.197790 GCATGAGCGTCCGTGCAT 61.198 61.111 15.24 0.00 45.68 3.96
2507 2892 2.705220 CATGAGCGTCCGTGCATG 59.295 61.111 0.00 0.00 37.31 4.06
2509 2894 3.670637 ATGAGCGTCCGTGCATGCT 62.671 57.895 20.33 0.00 41.58 3.79
2510 2895 3.558411 GAGCGTCCGTGCATGCTC 61.558 66.667 20.33 14.84 45.77 4.26
2511 2896 4.074526 AGCGTCCGTGCATGCTCT 62.075 61.111 20.33 1.79 32.94 4.09
2512 2897 3.857854 GCGTCCGTGCATGCTCTG 61.858 66.667 20.33 12.05 34.15 3.35
2551 2944 3.044305 GTGTGTCTCACCAGCCGC 61.044 66.667 0.00 0.00 40.84 6.53
2552 2945 3.545574 TGTGTCTCACCAGCCGCA 61.546 61.111 0.00 0.00 32.73 5.69
2553 2946 2.046892 GTGTCTCACCAGCCGCAT 60.047 61.111 0.00 0.00 0.00 4.73
2554 2947 1.218047 GTGTCTCACCAGCCGCATA 59.782 57.895 0.00 0.00 0.00 3.14
2555 2948 0.391130 GTGTCTCACCAGCCGCATAA 60.391 55.000 0.00 0.00 0.00 1.90
2556 2949 0.541392 TGTCTCACCAGCCGCATAAT 59.459 50.000 0.00 0.00 0.00 1.28
2557 2950 1.065491 TGTCTCACCAGCCGCATAATT 60.065 47.619 0.00 0.00 0.00 1.40
2558 2951 1.331756 GTCTCACCAGCCGCATAATTG 59.668 52.381 0.00 0.00 0.00 2.32
2559 2952 0.664761 CTCACCAGCCGCATAATTGG 59.335 55.000 0.00 0.00 36.76 3.16
2560 2953 0.751277 TCACCAGCCGCATAATTGGG 60.751 55.000 0.00 0.00 34.99 4.12
2572 2965 4.381505 CGCATAATTGGGGGCATAATTACC 60.382 45.833 0.00 0.00 33.15 2.85
2584 2977 7.140705 GGGGCATAATTACCGTTGTTAATTAC 58.859 38.462 0.00 0.00 31.15 1.89
2594 2987 7.605410 ACCGTTGTTAATTACTAATGACTGG 57.395 36.000 0.00 0.00 0.00 4.00
2595 2988 6.093082 ACCGTTGTTAATTACTAATGACTGGC 59.907 38.462 0.00 0.00 0.00 4.85
2596 2989 6.092944 CCGTTGTTAATTACTAATGACTGGCA 59.907 38.462 0.00 0.00 0.00 4.92
2597 2990 7.201696 CCGTTGTTAATTACTAATGACTGGCAT 60.202 37.037 0.00 0.00 39.43 4.40
2598 2991 7.639850 CGTTGTTAATTACTAATGACTGGCATG 59.360 37.037 0.00 0.00 37.28 4.06
2599 2992 7.026631 TGTTAATTACTAATGACTGGCATGC 57.973 36.000 9.90 9.90 37.28 4.06
2600 2993 6.601217 TGTTAATTACTAATGACTGGCATGCA 59.399 34.615 21.36 4.79 37.28 3.96
2793 3208 2.435059 GTCTCCTTGGCGCAGGAC 60.435 66.667 12.23 1.48 38.11 3.85
2854 4483 2.344981 GCCATCAGTGTGCATGCCA 61.345 57.895 16.68 10.08 0.00 4.92
2860 4489 1.379443 AGTGTGCATGCCATCCAGG 60.379 57.895 16.68 0.00 41.84 4.45
2884 4513 4.432741 GGCCTGCCTGAACCCCTC 62.433 72.222 0.00 0.00 0.00 4.30
2885 4514 4.432741 GCCTGCCTGAACCCCTCC 62.433 72.222 0.00 0.00 0.00 4.30
2886 4515 2.612115 CCTGCCTGAACCCCTCCT 60.612 66.667 0.00 0.00 0.00 3.69
2887 4516 1.306997 CCTGCCTGAACCCCTCCTA 60.307 63.158 0.00 0.00 0.00 2.94
2888 4517 1.627297 CCTGCCTGAACCCCTCCTAC 61.627 65.000 0.00 0.00 0.00 3.18
2889 4518 1.615424 TGCCTGAACCCCTCCTACC 60.615 63.158 0.00 0.00 0.00 3.18
2901 4530 0.179062 CTCCTACCATGGCTCTGCAC 60.179 60.000 13.04 0.00 0.00 4.57
2907 4536 0.963962 CCATGGCTCTGCACTTGTTT 59.036 50.000 0.00 0.00 0.00 2.83
2908 4537 2.161855 CCATGGCTCTGCACTTGTTTA 58.838 47.619 0.00 0.00 0.00 2.01
2909 4538 2.163010 CCATGGCTCTGCACTTGTTTAG 59.837 50.000 0.00 0.00 0.00 1.85
2910 4539 2.638480 TGGCTCTGCACTTGTTTAGT 57.362 45.000 0.00 0.00 37.68 2.24
2911 4540 3.762407 TGGCTCTGCACTTGTTTAGTA 57.238 42.857 0.00 0.00 34.56 1.82
2912 4541 3.399330 TGGCTCTGCACTTGTTTAGTAC 58.601 45.455 0.00 0.00 34.56 2.73
2915 4544 5.221561 TGGCTCTGCACTTGTTTAGTACTTA 60.222 40.000 0.00 0.00 34.56 2.24
2916 4545 5.120363 GGCTCTGCACTTGTTTAGTACTTAC 59.880 44.000 0.00 0.44 34.56 2.34
2917 4546 5.927115 GCTCTGCACTTGTTTAGTACTTACT 59.073 40.000 0.00 0.00 40.24 2.24
2918 4547 6.089685 GCTCTGCACTTGTTTAGTACTTACTC 59.910 42.308 0.00 0.00 37.73 2.59
2919 4548 6.453092 TCTGCACTTGTTTAGTACTTACTCC 58.547 40.000 0.00 0.00 37.73 3.85
2920 4549 6.267014 TCTGCACTTGTTTAGTACTTACTCCT 59.733 38.462 0.00 0.00 37.73 3.69
2921 4550 6.220930 TGCACTTGTTTAGTACTTACTCCTG 58.779 40.000 0.00 0.00 37.73 3.86
2923 4552 6.704937 GCACTTGTTTAGTACTTACTCCTGTT 59.295 38.462 0.00 0.00 37.73 3.16
2924 4553 7.095732 GCACTTGTTTAGTACTTACTCCTGTTC 60.096 40.741 0.00 0.00 37.73 3.18
2988 4624 3.728373 GGATCCACCAACGGGGCT 61.728 66.667 6.95 0.00 42.05 5.19
2990 4626 2.035626 ATCCACCAACGGGGCTTG 59.964 61.111 0.00 0.00 42.05 4.01
2993 4629 3.977244 CACCAACGGGGCTTGCAC 61.977 66.667 0.00 0.00 42.05 4.57
3002 4638 1.527433 GGGGCTTGCACCTGAACTTC 61.527 60.000 6.65 0.00 0.00 3.01
3032 4668 3.825308 CATCAGTATGTGCGCTGTTTTT 58.175 40.909 9.73 0.00 37.40 1.94
3053 4720 2.627004 CGAGACGCGCGTATCTCT 59.373 61.111 42.40 32.43 39.43 3.10
3097 6367 8.183536 TGTATGACAAAACAGCATGAACATATC 58.816 33.333 0.00 0.00 39.69 1.63
3098 6368 5.630061 TGACAAAACAGCATGAACATATCG 58.370 37.500 0.00 0.00 39.69 2.92
3099 6369 5.181056 TGACAAAACAGCATGAACATATCGT 59.819 36.000 0.00 0.00 39.69 3.73
3100 6370 6.012658 ACAAAACAGCATGAACATATCGTT 57.987 33.333 0.00 0.00 39.69 3.85
3127 6397 3.750639 TTTTTCGCGGGTGAACATATC 57.249 42.857 6.13 0.00 0.00 1.63
3128 6398 1.282817 TTTCGCGGGTGAACATATCG 58.717 50.000 6.13 0.00 0.00 2.92
3129 6399 0.173935 TTCGCGGGTGAACATATCGT 59.826 50.000 6.13 0.00 0.00 3.73
3130 6400 0.173935 TCGCGGGTGAACATATCGTT 59.826 50.000 6.13 0.00 41.86 3.85
3141 6411 3.821421 ACATATCGTTCTTCCAGGGAC 57.179 47.619 0.00 0.00 0.00 4.46
3142 6412 2.100916 ACATATCGTTCTTCCAGGGACG 59.899 50.000 0.00 0.00 0.00 4.79
3143 6413 2.133281 TATCGTTCTTCCAGGGACGA 57.867 50.000 9.61 9.61 0.00 4.20
3144 6414 0.818296 ATCGTTCTTCCAGGGACGAG 59.182 55.000 11.86 0.00 33.13 4.18
3145 6415 0.538977 TCGTTCTTCCAGGGACGAGT 60.539 55.000 0.00 0.00 0.00 4.18
3146 6416 0.388649 CGTTCTTCCAGGGACGAGTG 60.389 60.000 0.00 0.00 0.00 3.51
3147 6417 0.680061 GTTCTTCCAGGGACGAGTGT 59.320 55.000 0.00 0.00 0.00 3.55
3148 6418 1.070289 GTTCTTCCAGGGACGAGTGTT 59.930 52.381 0.00 0.00 0.00 3.32
3149 6419 1.420430 TCTTCCAGGGACGAGTGTTT 58.580 50.000 0.00 0.00 0.00 2.83
3150 6420 1.766496 TCTTCCAGGGACGAGTGTTTT 59.234 47.619 0.00 0.00 0.00 2.43
3151 6421 2.143925 CTTCCAGGGACGAGTGTTTTC 58.856 52.381 0.00 0.00 0.00 2.29
3152 6422 1.420430 TCCAGGGACGAGTGTTTTCT 58.580 50.000 0.00 0.00 0.00 2.52
3153 6423 1.343465 TCCAGGGACGAGTGTTTTCTC 59.657 52.381 0.00 0.00 0.00 2.87
3154 6424 1.608283 CCAGGGACGAGTGTTTTCTCC 60.608 57.143 0.00 0.00 0.00 3.71
3155 6425 1.344763 CAGGGACGAGTGTTTTCTCCT 59.655 52.381 0.00 0.00 0.00 3.69
3156 6426 2.047830 AGGGACGAGTGTTTTCTCCTT 58.952 47.619 0.00 0.00 0.00 3.36
3157 6427 2.438392 AGGGACGAGTGTTTTCTCCTTT 59.562 45.455 0.00 0.00 0.00 3.11
3158 6428 3.118000 AGGGACGAGTGTTTTCTCCTTTT 60.118 43.478 0.00 0.00 0.00 2.27
3159 6429 3.003378 GGGACGAGTGTTTTCTCCTTTTG 59.997 47.826 0.00 0.00 0.00 2.44
3160 6430 3.875134 GGACGAGTGTTTTCTCCTTTTGA 59.125 43.478 0.00 0.00 0.00 2.69
3161 6431 4.024809 GGACGAGTGTTTTCTCCTTTTGAG 60.025 45.833 0.00 0.00 42.90 3.02
3162 6432 3.877508 ACGAGTGTTTTCTCCTTTTGAGG 59.122 43.478 0.00 0.00 41.76 3.86
3163 6433 4.127171 CGAGTGTTTTCTCCTTTTGAGGA 58.873 43.478 0.00 0.00 41.76 3.71
3164 6434 4.024809 CGAGTGTTTTCTCCTTTTGAGGAC 60.025 45.833 0.00 0.00 41.76 3.85
3165 6435 5.117406 AGTGTTTTCTCCTTTTGAGGACT 57.883 39.130 0.00 0.00 41.76 3.85
3166 6436 5.126779 AGTGTTTTCTCCTTTTGAGGACTC 58.873 41.667 0.00 0.00 41.76 3.36
3167 6437 4.881850 GTGTTTTCTCCTTTTGAGGACTCA 59.118 41.667 0.00 0.00 41.76 3.41
3168 6438 5.532779 GTGTTTTCTCCTTTTGAGGACTCAT 59.467 40.000 2.42 0.00 41.76 2.90
3169 6439 5.532406 TGTTTTCTCCTTTTGAGGACTCATG 59.468 40.000 2.42 0.00 41.76 3.07
3170 6440 5.567037 TTTCTCCTTTTGAGGACTCATGA 57.433 39.130 2.42 0.00 41.76 3.07
3171 6441 4.543590 TCTCCTTTTGAGGACTCATGAC 57.456 45.455 2.42 0.00 41.76 3.06
3172 6442 4.163427 TCTCCTTTTGAGGACTCATGACT 58.837 43.478 2.42 0.00 41.76 3.41
3173 6443 4.221703 TCTCCTTTTGAGGACTCATGACTC 59.778 45.833 2.42 5.14 41.76 3.36
3174 6444 3.903714 TCCTTTTGAGGACTCATGACTCA 59.096 43.478 9.76 9.76 39.64 3.41
3175 6445 4.533707 TCCTTTTGAGGACTCATGACTCAT 59.466 41.667 13.53 2.67 40.56 2.90
3176 6446 4.634883 CCTTTTGAGGACTCATGACTCATG 59.365 45.833 13.53 12.25 40.56 3.07
3177 6447 5.485620 CTTTTGAGGACTCATGACTCATGA 58.514 41.667 18.74 18.74 46.84 3.07
3187 6457 4.763073 TCATGACTCATGAGCACTTTAGG 58.237 43.478 22.83 2.04 44.60 2.69
3188 6458 3.616956 TGACTCATGAGCACTTTAGGG 57.383 47.619 22.83 0.00 0.00 3.53
3189 6459 2.906389 TGACTCATGAGCACTTTAGGGT 59.094 45.455 22.83 0.00 0.00 4.34
3190 6460 3.327757 TGACTCATGAGCACTTTAGGGTT 59.672 43.478 22.83 0.00 0.00 4.11
3191 6461 4.202461 TGACTCATGAGCACTTTAGGGTTT 60.202 41.667 22.83 0.00 0.00 3.27
3192 6462 4.729868 ACTCATGAGCACTTTAGGGTTTT 58.270 39.130 22.83 0.00 0.00 2.43
3193 6463 5.140454 ACTCATGAGCACTTTAGGGTTTTT 58.860 37.500 22.83 0.00 0.00 1.94
3223 6493 7.925703 CTCATGAGCAATTTAATGAACCATC 57.074 36.000 10.38 0.00 0.00 3.51
3224 6494 7.649533 TCATGAGCAATTTAATGAACCATCT 57.350 32.000 0.00 0.00 0.00 2.90
3225 6495 8.070034 TCATGAGCAATTTAATGAACCATCTT 57.930 30.769 0.00 0.00 0.00 2.40
3226 6496 7.977293 TCATGAGCAATTTAATGAACCATCTTG 59.023 33.333 0.00 0.00 0.00 3.02
3227 6497 7.230849 TGAGCAATTTAATGAACCATCTTGT 57.769 32.000 0.00 0.00 0.00 3.16
3228 6498 7.092079 TGAGCAATTTAATGAACCATCTTGTG 58.908 34.615 0.00 0.00 0.00 3.33
3229 6499 5.870978 AGCAATTTAATGAACCATCTTGTGC 59.129 36.000 0.00 0.00 0.00 4.57
3230 6500 5.870978 GCAATTTAATGAACCATCTTGTGCT 59.129 36.000 0.00 0.00 0.00 4.40
3231 6501 6.183360 GCAATTTAATGAACCATCTTGTGCTG 60.183 38.462 0.00 0.00 0.00 4.41
3232 6502 4.439305 TTAATGAACCATCTTGTGCTGC 57.561 40.909 0.00 0.00 0.00 5.25
3233 6503 2.211250 ATGAACCATCTTGTGCTGCT 57.789 45.000 0.00 0.00 0.00 4.24
3234 6504 2.857186 TGAACCATCTTGTGCTGCTA 57.143 45.000 0.00 0.00 0.00 3.49
3235 6505 3.354948 TGAACCATCTTGTGCTGCTAT 57.645 42.857 0.00 0.00 0.00 2.97
3236 6506 3.011818 TGAACCATCTTGTGCTGCTATG 58.988 45.455 0.00 0.00 0.00 2.23
3237 6507 1.386533 ACCATCTTGTGCTGCTATGC 58.613 50.000 0.00 0.00 0.00 3.14
3238 6508 0.666913 CCATCTTGTGCTGCTATGCC 59.333 55.000 0.00 0.00 0.00 4.40
3239 6509 1.676746 CATCTTGTGCTGCTATGCCT 58.323 50.000 0.00 0.00 0.00 4.75
3240 6510 1.333931 CATCTTGTGCTGCTATGCCTG 59.666 52.381 0.00 0.00 0.00 4.85
3241 6511 1.028330 TCTTGTGCTGCTATGCCTGC 61.028 55.000 0.00 0.00 0.00 4.85
3242 6512 1.303480 TTGTGCTGCTATGCCTGCA 60.303 52.632 0.00 0.00 38.81 4.41
3243 6513 0.681887 TTGTGCTGCTATGCCTGCAT 60.682 50.000 9.87 9.87 38.65 3.96
3244 6514 0.681887 TGTGCTGCTATGCCTGCATT 60.682 50.000 10.27 0.00 38.65 3.56
3245 6515 1.311859 GTGCTGCTATGCCTGCATTA 58.688 50.000 10.27 0.00 38.65 1.90
3246 6516 1.002033 GTGCTGCTATGCCTGCATTAC 60.002 52.381 10.27 3.74 38.65 1.89
3247 6517 0.236711 GCTGCTATGCCTGCATTACG 59.763 55.000 10.27 1.20 39.86 3.18
3248 6518 0.870393 CTGCTATGCCTGCATTACGG 59.130 55.000 10.27 4.44 39.86 4.02
3250 6520 1.237285 GCTATGCCTGCATTACGGGG 61.237 60.000 10.27 0.00 46.10 5.73
3251 6521 0.606401 CTATGCCTGCATTACGGGGG 60.606 60.000 10.27 0.00 46.10 5.40
3265 6535 3.001406 GGGGGCGCGGATATACCT 61.001 66.667 8.83 0.00 36.31 3.08
3266 6536 2.577593 GGGGCGCGGATATACCTC 59.422 66.667 8.83 0.00 36.31 3.85
3268 6538 2.181021 GGCGCGGATATACCTCGG 59.819 66.667 8.83 0.00 45.61 4.63
3269 6539 2.633509 GGCGCGGATATACCTCGGT 61.634 63.158 8.83 0.00 45.61 4.69
3270 6540 1.288127 GCGCGGATATACCTCGGTT 59.712 57.895 8.83 0.00 45.61 4.44
3271 6541 0.731855 GCGCGGATATACCTCGGTTC 60.732 60.000 8.83 0.00 45.61 3.62
3272 6542 0.879765 CGCGGATATACCTCGGTTCT 59.120 55.000 0.00 0.00 42.35 3.01
3273 6543 1.268899 CGCGGATATACCTCGGTTCTT 59.731 52.381 0.00 0.00 42.35 2.52
3274 6544 2.288030 CGCGGATATACCTCGGTTCTTT 60.288 50.000 0.00 0.00 42.35 2.52
3275 6545 3.058016 CGCGGATATACCTCGGTTCTTTA 60.058 47.826 0.00 0.00 42.35 1.85
3276 6546 4.557296 CGCGGATATACCTCGGTTCTTTAA 60.557 45.833 0.00 0.00 42.35 1.52
3277 6547 4.683320 GCGGATATACCTCGGTTCTTTAAC 59.317 45.833 0.00 0.00 36.31 2.01
3278 6548 5.225642 CGGATATACCTCGGTTCTTTAACC 58.774 45.833 0.00 0.00 43.17 2.85
3279 6549 5.221303 CGGATATACCTCGGTTCTTTAACCA 60.221 44.000 7.96 0.00 45.02 3.67
3280 6550 6.517864 CGGATATACCTCGGTTCTTTAACCAT 60.518 42.308 7.96 0.00 45.02 3.55
3505 6776 0.103208 CACTGATCTGTAGTCGGCCC 59.897 60.000 4.78 0.00 0.00 5.80
3526 6797 2.490903 CCAGGAGGTGCAGAATTTCTTG 59.509 50.000 0.00 0.00 0.00 3.02
3622 6893 7.561021 TCACATGCAAACACTCTAAACTAAA 57.439 32.000 0.00 0.00 0.00 1.85
3636 6907 2.135664 ACTAAAGATCGATTCGGCCG 57.864 50.000 22.12 22.12 0.00 6.13
3640 6911 4.944372 GATCGATTCGGCCGCGGT 62.944 66.667 28.70 15.74 0.00 5.68
3761 7032 6.493458 AGCCTTGAAACTTCCAAAGCTTAATA 59.507 34.615 0.00 0.00 37.88 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 2.296471 AGTCACTACTCACTTTCCACCG 59.704 50.000 0.00 0.00 0.00 4.94
96 97 5.683876 TGCTAACCTTATCTTGCTCTCTT 57.316 39.130 0.00 0.00 0.00 2.85
144 145 1.980765 ACCCAGAGTGAGCTTCAATGA 59.019 47.619 0.00 0.00 0.00 2.57
181 182 5.186797 AGACAGAGGGAGTACAATTCTTCAG 59.813 44.000 0.00 0.00 0.00 3.02
190 191 3.587951 ACACTAGAGACAGAGGGAGTACA 59.412 47.826 0.00 0.00 0.00 2.90
230 232 4.505808 TCTAGTACTCACTCCGTCTCAAG 58.494 47.826 0.00 0.00 36.14 3.02
238 240 4.828387 CCCCTGTAATCTAGTACTCACTCC 59.172 50.000 0.00 0.00 36.14 3.85
242 244 3.206866 AGCCCCCTGTAATCTAGTACTCA 59.793 47.826 0.00 0.00 0.00 3.41
454 466 3.449528 TCTCAAATGGCTGATCGAGAG 57.550 47.619 0.00 0.00 0.00 3.20
496 508 2.780592 GCCCCTATCCCTTTCTCTTTCT 59.219 50.000 0.00 0.00 0.00 2.52
511 523 3.138283 CCTTGAAATCATGGTAGCCCCTA 59.862 47.826 7.08 0.00 36.67 3.53
519 531 2.092212 AGGATCGCCTTGAAATCATGGT 60.092 45.455 14.62 0.00 43.90 3.55
567 585 3.296836 TCCCAAGTTCGGCGTCGA 61.297 61.111 8.66 8.66 44.44 4.20
570 588 2.030562 CAGTCCCAAGTTCGGCGT 59.969 61.111 6.85 0.00 0.00 5.68
571 589 2.742372 CCAGTCCCAAGTTCGGCG 60.742 66.667 0.00 0.00 0.00 6.46
573 591 1.966451 GTGCCAGTCCCAAGTTCGG 60.966 63.158 0.00 0.00 0.00 4.30
574 592 1.071471 AGTGCCAGTCCCAAGTTCG 59.929 57.895 0.00 0.00 0.00 3.95
575 593 1.518903 GCAGTGCCAGTCCCAAGTTC 61.519 60.000 2.85 0.00 0.00 3.01
576 594 1.529244 GCAGTGCCAGTCCCAAGTT 60.529 57.895 2.85 0.00 0.00 2.66
577 595 2.113986 GCAGTGCCAGTCCCAAGT 59.886 61.111 2.85 0.00 0.00 3.16
588 606 0.179089 ACTCATGATCGAGGCAGTGC 60.179 55.000 6.55 6.55 37.34 4.40
589 607 1.537776 GGACTCATGATCGAGGCAGTG 60.538 57.143 5.90 0.00 43.43 3.66
633 655 3.131577 ACATAACGTACCATCCGTGACAT 59.868 43.478 0.00 0.00 38.77 3.06
640 662 3.554337 CCCTGCTACATAACGTACCATCC 60.554 52.174 0.00 0.00 0.00 3.51
648 670 5.050091 CAGAAAATAGCCCTGCTACATAACG 60.050 44.000 0.00 0.00 44.24 3.18
653 675 4.261801 GTTCAGAAAATAGCCCTGCTACA 58.738 43.478 0.00 0.00 44.24 2.74
660 682 3.071479 TGTCACGTTCAGAAAATAGCCC 58.929 45.455 0.00 0.00 0.00 5.19
662 684 5.177696 AGAGTTGTCACGTTCAGAAAATAGC 59.822 40.000 0.00 0.00 0.00 2.97
669 691 3.003793 CAGAGAGAGTTGTCACGTTCAGA 59.996 47.826 0.00 0.00 0.00 3.27
670 692 3.304257 CAGAGAGAGTTGTCACGTTCAG 58.696 50.000 0.00 0.00 0.00 3.02
671 693 2.543861 GCAGAGAGAGTTGTCACGTTCA 60.544 50.000 0.00 0.00 0.00 3.18
672 694 2.055100 GCAGAGAGAGTTGTCACGTTC 58.945 52.381 0.00 0.00 0.00 3.95
674 696 1.032794 TGCAGAGAGAGTTGTCACGT 58.967 50.000 0.00 0.00 0.00 4.49
675 697 2.360553 ATGCAGAGAGAGTTGTCACG 57.639 50.000 0.00 0.00 0.00 4.35
676 698 2.159234 GCAATGCAGAGAGAGTTGTCAC 59.841 50.000 0.00 0.00 0.00 3.67
696 755 5.067153 ACAGTAGTGAGATGTCAGTCTATGC 59.933 44.000 2.98 0.00 37.53 3.14
701 760 5.986135 ACAAAACAGTAGTGAGATGTCAGTC 59.014 40.000 2.98 0.00 37.53 3.51
731 937 4.414852 CCTTGTTTCAGAACACAACACAG 58.585 43.478 6.75 0.45 45.01 3.66
753 959 6.204495 GGAATCAGAATTAAGTGATGAGCTCC 59.796 42.308 12.15 0.00 33.58 4.70
840 1080 0.040067 GCACTAACAACAGTGGCAGC 60.040 55.000 5.49 0.00 45.03 5.25
852 1092 2.355818 CCCCTCCTAGGTTTGCACTAAC 60.356 54.545 9.08 0.00 31.93 2.34
863 1103 0.181350 GATGTTGTGCCCCTCCTAGG 59.819 60.000 0.82 0.82 34.30 3.02
868 1108 1.669999 GCATGGATGTTGTGCCCCTC 61.670 60.000 0.00 0.00 32.88 4.30
889 1136 3.115554 GTGGAATTTGACAAGTGTGTGC 58.884 45.455 0.00 0.00 38.41 4.57
894 1141 1.673760 CGCGTGGAATTTGACAAGTG 58.326 50.000 0.00 0.00 0.00 3.16
897 1144 1.284408 GGCGCGTGGAATTTGACAA 59.716 52.632 8.43 0.00 0.00 3.18
920 1210 3.789858 CTGAGCAGCAGCACGCAG 61.790 66.667 3.17 7.12 46.13 5.18
923 1213 3.420606 CACCTGAGCAGCAGCACG 61.421 66.667 3.17 0.00 45.49 5.34
924 1214 3.054503 CCACCTGAGCAGCAGCAC 61.055 66.667 3.17 0.00 45.49 4.40
925 1215 3.243816 TCCACCTGAGCAGCAGCA 61.244 61.111 3.17 0.00 45.49 4.41
926 1216 2.436292 CTCCACCTGAGCAGCAGC 60.436 66.667 0.00 0.00 43.50 5.25
948 1238 9.610705 GTACTCCTATATATACATCCGTCTGAA 57.389 37.037 0.00 0.00 0.00 3.02
990 1280 0.887836 CCTGATGCATGGGGATGTCG 60.888 60.000 2.46 0.00 0.00 4.35
1059 1349 3.264104 TGTCTTTATAAAGGCGGTTCCG 58.736 45.455 21.58 6.90 43.38 4.30
1060 1350 3.626217 CCTGTCTTTATAAAGGCGGTTCC 59.374 47.826 28.40 9.93 43.71 3.62
1061 1351 3.064958 GCCTGTCTTTATAAAGGCGGTTC 59.935 47.826 28.40 19.24 45.30 3.62
1062 1352 3.014623 GCCTGTCTTTATAAAGGCGGTT 58.985 45.455 28.40 0.00 45.30 4.44
1063 1353 2.640184 GCCTGTCTTTATAAAGGCGGT 58.360 47.619 28.40 0.00 45.30 5.68
1089 1384 1.061276 GATCGAAGAAGAACGCCAAGC 59.939 52.381 0.00 0.00 43.58 4.01
1358 1674 6.273071 TCTCGTGGTGTAATGAACATATGAG 58.727 40.000 10.38 0.00 41.10 2.90
1359 1675 6.215495 TCTCGTGGTGTAATGAACATATGA 57.785 37.500 10.38 0.00 41.10 2.15
1360 1676 7.224557 TGAATCTCGTGGTGTAATGAACATATG 59.775 37.037 0.00 0.00 41.10 1.78
1361 1677 7.272244 TGAATCTCGTGGTGTAATGAACATAT 58.728 34.615 0.00 0.00 41.10 1.78
1362 1678 6.635755 TGAATCTCGTGGTGTAATGAACATA 58.364 36.000 0.00 0.00 41.10 2.29
1364 1680 4.888917 TGAATCTCGTGGTGTAATGAACA 58.111 39.130 0.00 0.00 35.06 3.18
1365 1681 5.062308 GTCTGAATCTCGTGGTGTAATGAAC 59.938 44.000 0.00 0.00 0.00 3.18
1367 1683 4.462834 AGTCTGAATCTCGTGGTGTAATGA 59.537 41.667 0.00 0.00 0.00 2.57
1368 1684 4.748892 AGTCTGAATCTCGTGGTGTAATG 58.251 43.478 0.00 0.00 0.00 1.90
1394 1729 2.617308 AGATTCATCGTGATACCGTCGT 59.383 45.455 0.00 0.00 0.00 4.34
1398 1733 4.230314 ACAGAGATTCATCGTGATACCG 57.770 45.455 0.63 0.00 0.00 4.02
1399 1734 8.594881 AATTAACAGAGATTCATCGTGATACC 57.405 34.615 0.63 0.00 0.00 2.73
1404 1739 8.331022 CAAGGTAATTAACAGAGATTCATCGTG 58.669 37.037 2.78 0.00 0.00 4.35
1406 1741 7.225538 AGCAAGGTAATTAACAGAGATTCATCG 59.774 37.037 2.78 0.00 0.00 3.84
1416 1751 6.094603 AGCAGAATGAGCAAGGTAATTAACAG 59.905 38.462 2.78 0.00 39.69 3.16
1421 1756 4.095483 CGAAGCAGAATGAGCAAGGTAATT 59.905 41.667 0.00 0.00 39.69 1.40
1425 1760 1.271054 ACGAAGCAGAATGAGCAAGGT 60.271 47.619 0.00 0.00 39.69 3.50
1426 1761 1.446907 ACGAAGCAGAATGAGCAAGG 58.553 50.000 0.00 0.00 39.69 3.61
1427 1762 3.549299 AAACGAAGCAGAATGAGCAAG 57.451 42.857 0.00 0.00 39.69 4.01
1428 1763 3.066621 ACAAAACGAAGCAGAATGAGCAA 59.933 39.130 0.00 0.00 39.69 3.91
1429 1764 2.618241 ACAAAACGAAGCAGAATGAGCA 59.382 40.909 0.00 0.00 39.69 4.26
1430 1765 2.975851 CACAAAACGAAGCAGAATGAGC 59.024 45.455 0.00 0.00 39.69 4.26
1431 1766 2.975851 GCACAAAACGAAGCAGAATGAG 59.024 45.455 0.00 0.00 39.69 2.90
1432 1767 2.601979 CGCACAAAACGAAGCAGAATGA 60.602 45.455 0.00 0.00 39.69 2.57
1433 1768 1.710249 CGCACAAAACGAAGCAGAATG 59.290 47.619 0.00 0.00 40.87 2.67
1434 1769 1.334960 CCGCACAAAACGAAGCAGAAT 60.335 47.619 0.00 0.00 0.00 2.40
1435 1770 0.028770 CCGCACAAAACGAAGCAGAA 59.971 50.000 0.00 0.00 0.00 3.02
1436 1771 1.646540 CCGCACAAAACGAAGCAGA 59.353 52.632 0.00 0.00 0.00 4.26
1437 1772 2.010817 GCCGCACAAAACGAAGCAG 61.011 57.895 0.00 0.00 0.00 4.24
1438 1773 2.025441 GCCGCACAAAACGAAGCA 59.975 55.556 0.00 0.00 0.00 3.91
1439 1774 3.091022 CGCCGCACAAAACGAAGC 61.091 61.111 0.00 0.00 0.00 3.86
1440 1775 1.721133 GACGCCGCACAAAACGAAG 60.721 57.895 0.00 0.00 0.00 3.79
1441 1776 2.325166 GACGCCGCACAAAACGAA 59.675 55.556 0.00 0.00 0.00 3.85
1442 1777 2.876879 CTGACGCCGCACAAAACGA 61.877 57.895 0.00 0.00 0.00 3.85
1443 1778 2.425124 CTGACGCCGCACAAAACG 60.425 61.111 0.00 0.00 0.00 3.60
1444 1779 2.051345 CCTGACGCCGCACAAAAC 60.051 61.111 0.00 0.00 0.00 2.43
1445 1780 1.781025 CTTCCTGACGCCGCACAAAA 61.781 55.000 0.00 0.00 0.00 2.44
1446 1781 2.203084 TTCCTGACGCCGCACAAA 60.203 55.556 0.00 0.00 0.00 2.83
1447 1782 2.664851 CTTCCTGACGCCGCACAA 60.665 61.111 0.00 0.00 0.00 3.33
1448 1783 3.454587 AACTTCCTGACGCCGCACA 62.455 57.895 0.00 0.00 0.00 4.57
1449 1784 2.665185 AACTTCCTGACGCCGCAC 60.665 61.111 0.00 0.00 0.00 5.34
1450 1785 2.664851 CAACTTCCTGACGCCGCA 60.665 61.111 0.00 0.00 0.00 5.69
1451 1786 2.357034 TCAACTTCCTGACGCCGC 60.357 61.111 0.00 0.00 0.00 6.53
1452 1787 1.738099 CCTCAACTTCCTGACGCCG 60.738 63.158 0.00 0.00 0.00 6.46
1482 1817 1.588239 TCTCCAGGAACAGCATCCAT 58.412 50.000 6.07 0.00 42.27 3.41
1531 1866 3.373130 TGCAATCTTCTCAGCGATTCTTG 59.627 43.478 0.00 0.00 0.00 3.02
1537 1872 6.924111 TGTATATATGCAATCTTCTCAGCGA 58.076 36.000 0.45 0.00 0.00 4.93
1549 1891 8.390354 GGTCTACGTACGTATGTATATATGCAA 58.610 37.037 26.98 3.15 32.11 4.08
1561 1903 5.713025 ACAAATGTTGGTCTACGTACGTAT 58.287 37.500 26.98 9.28 34.12 3.06
1562 1904 5.119931 ACAAATGTTGGTCTACGTACGTA 57.880 39.130 25.41 25.41 34.12 3.57
1563 1905 3.981211 ACAAATGTTGGTCTACGTACGT 58.019 40.909 25.98 25.98 34.12 3.57
1564 1906 4.977741 AACAAATGTTGGTCTACGTACG 57.022 40.909 15.01 15.01 36.80 3.67
1565 1907 7.169645 TCACTAAACAAATGTTGGTCTACGTAC 59.830 37.037 0.00 0.00 38.44 3.67
1566 1908 7.208777 TCACTAAACAAATGTTGGTCTACGTA 58.791 34.615 0.00 0.00 38.44 3.57
1567 1909 6.050432 TCACTAAACAAATGTTGGTCTACGT 58.950 36.000 0.00 0.00 38.44 3.57
1568 1910 6.533819 TCACTAAACAAATGTTGGTCTACG 57.466 37.500 0.00 0.00 38.44 3.51
1574 1916 6.430925 TCTCAGGATCACTAAACAAATGTTGG 59.569 38.462 0.00 0.00 38.44 3.77
1575 1917 7.361542 CCTCTCAGGATCACTAAACAAATGTTG 60.362 40.741 0.00 0.00 37.67 3.33
1585 1927 3.449018 GCAGTTCCTCTCAGGATCACTAA 59.551 47.826 0.00 0.00 45.34 2.24
1606 1948 0.389426 CAAGCTCACCCTGCAATTGC 60.389 55.000 23.69 23.69 42.50 3.56
1607 1949 1.068055 GTCAAGCTCACCCTGCAATTG 60.068 52.381 0.00 0.00 0.00 2.32
1608 1950 1.251251 GTCAAGCTCACCCTGCAATT 58.749 50.000 0.00 0.00 0.00 2.32
1940 2288 1.116536 TGTACCAGACGGACCAGCAA 61.117 55.000 0.00 0.00 35.59 3.91
2159 2530 2.031919 GGTGGTGACGTGCATGGA 59.968 61.111 11.36 0.00 0.00 3.41
2160 2531 1.675310 ATGGTGGTGACGTGCATGG 60.675 57.895 11.36 0.00 0.00 3.66
2161 2532 1.236616 ACATGGTGGTGACGTGCATG 61.237 55.000 3.82 3.82 0.00 4.06
2162 2533 1.073025 ACATGGTGGTGACGTGCAT 59.927 52.632 0.00 0.00 0.00 3.96
2163 2534 1.891449 CACATGGTGGTGACGTGCA 60.891 57.895 0.00 0.00 41.32 4.57
2164 2535 2.945984 CACATGGTGGTGACGTGC 59.054 61.111 0.00 0.00 41.32 5.34
2173 2544 3.066190 CTGGCTGGCCACATGGTG 61.066 66.667 10.55 0.00 41.89 4.17
2174 2545 3.583380 ACTGGCTGGCCACATGGT 61.583 61.111 10.55 4.37 41.89 3.55
2175 2546 3.066190 CACTGGCTGGCCACATGG 61.066 66.667 10.55 3.72 41.89 3.66
2205 2576 2.248140 CAACGTTCGTGCACGCAT 59.752 55.556 33.63 15.68 44.37 4.73
2221 2592 2.281484 GCGAGCCCCTGAAACACA 60.281 61.111 0.00 0.00 0.00 3.72
2222 2593 3.423154 CGCGAGCCCCTGAAACAC 61.423 66.667 0.00 0.00 0.00 3.32
2223 2594 3.936203 ACGCGAGCCCCTGAAACA 61.936 61.111 15.93 0.00 0.00 2.83
2224 2595 3.423154 CACGCGAGCCCCTGAAAC 61.423 66.667 15.93 0.00 0.00 2.78
2388 2759 4.984785 CGCATGTACTACTACGTAGGAGTA 59.015 45.833 34.20 34.20 45.47 2.59
2390 2761 3.806521 ACGCATGTACTACTACGTAGGAG 59.193 47.826 29.57 29.57 40.13 3.69
2391 2762 3.557185 CACGCATGTACTACTACGTAGGA 59.443 47.826 25.63 17.52 40.13 2.94
2392 2763 3.310774 ACACGCATGTACTACTACGTAGG 59.689 47.826 25.63 11.92 40.13 3.18
2393 2764 4.269312 CACACGCATGTACTACTACGTAG 58.731 47.826 20.97 20.97 38.35 3.51
2394 2765 3.063861 CCACACGCATGTACTACTACGTA 59.936 47.826 0.00 0.00 36.72 3.57
2395 2766 2.159476 CCACACGCATGTACTACTACGT 60.159 50.000 0.00 0.00 36.72 3.57
2414 2794 4.972733 AACAGCGGGCATGCACCA 62.973 61.111 21.36 0.00 37.31 4.17
2424 2804 2.414559 CCATTTAGTTGAGCAACAGCGG 60.415 50.000 14.99 4.95 43.47 5.52
2429 2809 2.558359 AGCACCCATTTAGTTGAGCAAC 59.442 45.455 5.24 5.24 41.45 4.17
2430 2810 2.819608 GAGCACCCATTTAGTTGAGCAA 59.180 45.455 0.00 0.00 0.00 3.91
2444 2829 3.721370 ATGCCGGAATGGAGCACCC 62.721 63.158 5.05 0.00 42.00 4.61
2482 2867 1.485838 CGGACGCTCATGCTCATGTC 61.486 60.000 9.41 0.76 39.72 3.06
2488 2873 3.670637 ATGCACGGACGCTCATGCT 62.671 57.895 0.00 0.00 38.90 3.79
2551 2944 4.770010 ACGGTAATTATGCCCCCAATTATG 59.230 41.667 0.00 0.00 31.29 1.90
2552 2945 5.005628 ACGGTAATTATGCCCCCAATTAT 57.994 39.130 0.00 0.00 31.29 1.28
2553 2946 4.456662 ACGGTAATTATGCCCCCAATTA 57.543 40.909 0.00 0.00 0.00 1.40
2554 2947 3.322191 ACGGTAATTATGCCCCCAATT 57.678 42.857 0.00 0.00 0.00 2.32
2555 2948 2.962421 CAACGGTAATTATGCCCCCAAT 59.038 45.455 0.00 0.00 0.00 3.16
2556 2949 2.291670 ACAACGGTAATTATGCCCCCAA 60.292 45.455 0.00 0.00 0.00 4.12
2557 2950 1.285373 ACAACGGTAATTATGCCCCCA 59.715 47.619 0.00 0.00 0.00 4.96
2558 2951 2.061509 ACAACGGTAATTATGCCCCC 57.938 50.000 0.00 0.00 0.00 5.40
2559 2952 5.777850 ATTAACAACGGTAATTATGCCCC 57.222 39.130 0.00 0.00 0.00 5.80
2560 2953 7.933396 AGTAATTAACAACGGTAATTATGCCC 58.067 34.615 7.33 0.00 31.11 5.36
2572 2965 7.067532 TGCCAGTCATTAGTAATTAACAACG 57.932 36.000 0.00 0.00 0.00 4.10
2754 3169 0.905357 CGACCATCTTCTTCCCCTGT 59.095 55.000 0.00 0.00 0.00 4.00
2789 3204 1.878656 CTGTTCTTCCGAGGCGTCCT 61.879 60.000 0.00 0.00 36.03 3.85
2793 3208 1.446272 GGTCTGTTCTTCCGAGGCG 60.446 63.158 0.00 0.00 0.00 5.52
2795 3210 1.338200 CCTTGGTCTGTTCTTCCGAGG 60.338 57.143 0.00 0.00 43.74 4.63
2799 3214 0.034896 TCGCCTTGGTCTGTTCTTCC 59.965 55.000 0.00 0.00 0.00 3.46
2854 4483 2.366167 AGGCCGCTTCTCCTGGAT 60.366 61.111 0.00 0.00 0.00 3.41
2860 4489 3.612247 TTCAGGCAGGCCGCTTCTC 62.612 63.158 17.07 3.22 41.91 2.87
2881 4510 1.340399 TGCAGAGCCATGGTAGGAGG 61.340 60.000 14.67 0.00 0.00 4.30
2882 4511 0.179062 GTGCAGAGCCATGGTAGGAG 60.179 60.000 14.67 1.29 0.00 3.69
2883 4512 0.618680 AGTGCAGAGCCATGGTAGGA 60.619 55.000 14.67 0.00 0.00 2.94
2884 4513 0.254178 AAGTGCAGAGCCATGGTAGG 59.746 55.000 14.67 2.00 0.00 3.18
2885 4514 1.339438 ACAAGTGCAGAGCCATGGTAG 60.339 52.381 14.67 2.04 0.00 3.18
2886 4515 0.692476 ACAAGTGCAGAGCCATGGTA 59.308 50.000 14.67 0.00 0.00 3.25
2887 4516 0.178981 AACAAGTGCAGAGCCATGGT 60.179 50.000 14.67 0.00 0.00 3.55
2888 4517 0.963962 AAACAAGTGCAGAGCCATGG 59.036 50.000 7.63 7.63 0.00 3.66
2889 4518 2.816087 ACTAAACAAGTGCAGAGCCATG 59.184 45.455 0.00 0.00 36.93 3.66
2901 4530 7.365741 TCGAACAGGAGTAAGTACTAAACAAG 58.634 38.462 0.00 0.00 36.50 3.16
2934 4570 2.225491 GCCACGAACAACTGCAGAATTA 59.775 45.455 23.35 0.00 0.00 1.40
2942 4578 3.705604 AGAATTTTGCCACGAACAACTG 58.294 40.909 0.00 0.00 0.00 3.16
2948 4584 4.377839 TGTCAAAGAATTTTGCCACGAA 57.622 36.364 0.00 0.00 42.71 3.85
2988 4624 1.405105 GCAACAGAAGTTCAGGTGCAA 59.595 47.619 27.67 0.00 44.65 4.08
2990 4626 1.002033 CTGCAACAGAAGTTCAGGTGC 60.002 52.381 26.39 26.39 45.36 5.01
2993 4629 1.311859 TGCTGCAACAGAAGTTCAGG 58.688 50.000 0.00 0.00 35.28 3.86
3002 4638 2.477357 GCACATACTGATGCTGCAACAG 60.477 50.000 30.57 30.57 39.60 3.16
3036 4672 1.719425 CAGAGATACGCGCGTCTCG 60.719 63.158 41.35 27.51 44.30 4.04
3037 4673 1.369448 CCAGAGATACGCGCGTCTC 60.369 63.158 41.35 35.96 40.88 3.36
3039 4675 3.025176 GCCAGAGATACGCGCGTC 61.025 66.667 41.35 26.37 0.00 5.19
3041 4677 3.323136 GTGCCAGAGATACGCGCG 61.323 66.667 30.96 30.96 0.00 6.86
3042 4678 1.756375 CTTGTGCCAGAGATACGCGC 61.756 60.000 5.73 0.00 0.00 6.86
3107 6377 2.094575 CGATATGTTCACCCGCGAAAAA 59.905 45.455 8.23 0.00 0.00 1.94
3108 6378 1.661617 CGATATGTTCACCCGCGAAAA 59.338 47.619 8.23 0.00 0.00 2.29
3109 6379 1.282817 CGATATGTTCACCCGCGAAA 58.717 50.000 8.23 0.00 0.00 3.46
3110 6380 0.173935 ACGATATGTTCACCCGCGAA 59.826 50.000 8.23 0.00 0.00 4.70
3111 6381 0.173935 AACGATATGTTCACCCGCGA 59.826 50.000 8.23 0.00 35.27 5.87
3112 6382 2.673074 AACGATATGTTCACCCGCG 58.327 52.632 0.00 0.00 35.27 6.46
3120 6390 3.430374 CGTCCCTGGAAGAACGATATGTT 60.430 47.826 0.00 0.00 45.61 2.71
3121 6391 2.100916 CGTCCCTGGAAGAACGATATGT 59.899 50.000 0.00 0.00 37.31 2.29
3122 6392 2.361119 TCGTCCCTGGAAGAACGATATG 59.639 50.000 0.00 0.00 39.04 1.78
3123 6393 2.623889 CTCGTCCCTGGAAGAACGATAT 59.376 50.000 11.83 0.00 42.55 1.63
3124 6394 2.022195 CTCGTCCCTGGAAGAACGATA 58.978 52.381 11.83 0.00 42.55 2.92
3125 6395 0.818296 CTCGTCCCTGGAAGAACGAT 59.182 55.000 11.83 0.00 42.55 3.73
3126 6396 0.538977 ACTCGTCCCTGGAAGAACGA 60.539 55.000 3.46 4.46 41.40 3.85
3127 6397 0.388649 CACTCGTCCCTGGAAGAACG 60.389 60.000 3.46 0.00 34.07 3.95
3128 6398 0.680061 ACACTCGTCCCTGGAAGAAC 59.320 55.000 3.46 0.00 34.07 3.01
3129 6399 1.420430 AACACTCGTCCCTGGAAGAA 58.580 50.000 3.46 0.00 34.07 2.52
3130 6400 1.420430 AAACACTCGTCCCTGGAAGA 58.580 50.000 0.00 1.87 34.07 2.87
3131 6401 2.143925 GAAAACACTCGTCCCTGGAAG 58.856 52.381 0.00 0.00 0.00 3.46
3132 6402 1.766496 AGAAAACACTCGTCCCTGGAA 59.234 47.619 0.00 0.00 0.00 3.53
3133 6403 1.343465 GAGAAAACACTCGTCCCTGGA 59.657 52.381 0.00 0.00 0.00 3.86
3134 6404 1.608283 GGAGAAAACACTCGTCCCTGG 60.608 57.143 0.00 0.00 37.74 4.45
3135 6405 1.344763 AGGAGAAAACACTCGTCCCTG 59.655 52.381 0.00 0.00 37.74 4.45
3136 6406 1.718280 AGGAGAAAACACTCGTCCCT 58.282 50.000 0.00 0.00 37.74 4.20
3137 6407 2.545537 AAGGAGAAAACACTCGTCCC 57.454 50.000 0.00 0.00 37.74 4.46
3138 6408 3.875134 TCAAAAGGAGAAAACACTCGTCC 59.125 43.478 0.00 0.00 37.74 4.79
3150 6420 9.413081 CATGAGTCATGAGTCCTCAAAAGGAGA 62.413 44.444 26.07 4.92 46.79 3.71
3151 6421 7.345958 CATGAGTCATGAGTCCTCAAAAGGAG 61.346 46.154 26.07 5.97 46.79 3.69
3152 6422 5.570236 CATGAGTCATGAGTCCTCAAAAGGA 60.570 44.000 26.07 6.06 45.44 3.36
3153 6423 4.277515 TGAGTCATGAGTCCTCAAAAGG 57.722 45.455 24.53 0.00 43.58 3.11
3154 6424 5.485620 TCATGAGTCATGAGTCCTCAAAAG 58.514 41.667 28.18 13.95 44.60 2.27
3155 6425 5.488262 TCATGAGTCATGAGTCCTCAAAA 57.512 39.130 28.18 8.08 44.60 2.44
3165 6435 4.383444 CCCTAAAGTGCTCATGAGTCATGA 60.383 45.833 29.39 29.39 46.84 3.07
3166 6436 3.875727 CCCTAAAGTGCTCATGAGTCATG 59.124 47.826 24.60 24.60 42.60 3.07
3167 6437 3.521126 ACCCTAAAGTGCTCATGAGTCAT 59.479 43.478 23.38 0.00 0.00 3.06
3168 6438 2.906389 ACCCTAAAGTGCTCATGAGTCA 59.094 45.455 23.38 18.03 0.00 3.41
3169 6439 3.618690 ACCCTAAAGTGCTCATGAGTC 57.381 47.619 23.38 15.78 0.00 3.36
3170 6440 4.373156 AAACCCTAAAGTGCTCATGAGT 57.627 40.909 23.38 6.31 0.00 3.41
3171 6441 5.712152 AAAAACCCTAAAGTGCTCATGAG 57.288 39.130 18.84 18.84 0.00 2.90
3199 6469 7.713750 AGATGGTTCATTAAATTGCTCATGAG 58.286 34.615 18.84 18.84 0.00 2.90
3200 6470 7.649533 AGATGGTTCATTAAATTGCTCATGA 57.350 32.000 0.00 0.00 0.00 3.07
3201 6471 7.762615 ACAAGATGGTTCATTAAATTGCTCATG 59.237 33.333 0.00 0.00 0.00 3.07
3202 6472 7.762615 CACAAGATGGTTCATTAAATTGCTCAT 59.237 33.333 0.00 0.00 0.00 2.90
3203 6473 7.092079 CACAAGATGGTTCATTAAATTGCTCA 58.908 34.615 0.00 0.00 0.00 4.26
3204 6474 6.035327 GCACAAGATGGTTCATTAAATTGCTC 59.965 38.462 0.00 0.00 0.00 4.26
3205 6475 5.870978 GCACAAGATGGTTCATTAAATTGCT 59.129 36.000 0.00 0.00 0.00 3.91
3206 6476 5.870978 AGCACAAGATGGTTCATTAAATTGC 59.129 36.000 0.00 0.00 34.57 3.56
3207 6477 6.183360 GCAGCACAAGATGGTTCATTAAATTG 60.183 38.462 0.00 0.00 36.72 2.32
3208 6478 5.870978 GCAGCACAAGATGGTTCATTAAATT 59.129 36.000 0.00 0.00 36.72 1.82
3209 6479 5.186409 AGCAGCACAAGATGGTTCATTAAAT 59.814 36.000 0.00 0.00 39.04 1.40
3210 6480 4.523943 AGCAGCACAAGATGGTTCATTAAA 59.476 37.500 0.00 0.00 39.04 1.52
3211 6481 4.081406 AGCAGCACAAGATGGTTCATTAA 58.919 39.130 0.00 0.00 39.04 1.40
3212 6482 3.689347 AGCAGCACAAGATGGTTCATTA 58.311 40.909 0.00 0.00 39.04 1.90
3213 6483 2.522185 AGCAGCACAAGATGGTTCATT 58.478 42.857 0.00 0.00 39.04 2.57
3214 6484 2.211250 AGCAGCACAAGATGGTTCAT 57.789 45.000 0.00 0.00 39.04 2.57
3215 6485 2.857186 TAGCAGCACAAGATGGTTCA 57.143 45.000 0.00 0.00 39.04 3.18
3216 6486 2.223433 GCATAGCAGCACAAGATGGTTC 60.223 50.000 0.00 0.00 39.04 3.62
3217 6487 1.747355 GCATAGCAGCACAAGATGGTT 59.253 47.619 0.00 0.00 39.04 3.67
3218 6488 1.386533 GCATAGCAGCACAAGATGGT 58.613 50.000 0.00 0.00 44.94 3.55
3219 6489 0.666913 GGCATAGCAGCACAAGATGG 59.333 55.000 0.00 0.00 35.83 3.51
3220 6490 1.333931 CAGGCATAGCAGCACAAGATG 59.666 52.381 0.00 0.00 35.83 2.90
3221 6491 1.676746 CAGGCATAGCAGCACAAGAT 58.323 50.000 0.00 0.00 35.83 2.40
3222 6492 1.028330 GCAGGCATAGCAGCACAAGA 61.028 55.000 0.00 0.00 35.83 3.02
3223 6493 1.310216 TGCAGGCATAGCAGCACAAG 61.310 55.000 0.00 0.00 36.51 3.16
3224 6494 0.681887 ATGCAGGCATAGCAGCACAA 60.682 50.000 4.68 0.00 46.36 3.33
3225 6495 0.681887 AATGCAGGCATAGCAGCACA 60.682 50.000 7.26 0.00 46.36 4.57
3226 6496 1.002033 GTAATGCAGGCATAGCAGCAC 60.002 52.381 7.26 2.65 46.36 4.40
3227 6497 1.311859 GTAATGCAGGCATAGCAGCA 58.688 50.000 7.26 10.02 46.36 4.41
3228 6498 0.236711 CGTAATGCAGGCATAGCAGC 59.763 55.000 7.26 0.00 46.36 5.25
3229 6499 0.870393 CCGTAATGCAGGCATAGCAG 59.130 55.000 7.26 0.29 46.36 4.24
3231 6501 1.237285 CCCCGTAATGCAGGCATAGC 61.237 60.000 7.26 2.90 35.31 2.97
3232 6502 0.606401 CCCCCGTAATGCAGGCATAG 60.606 60.000 7.26 2.66 35.31 2.23
3233 6503 1.454104 CCCCCGTAATGCAGGCATA 59.546 57.895 7.26 0.00 35.31 3.14
3234 6504 2.195683 CCCCCGTAATGCAGGCAT 59.804 61.111 0.00 0.00 38.46 4.40
3248 6518 3.001406 AGGTATATCCGCGCCCCC 61.001 66.667 0.00 0.00 41.99 5.40
3249 6519 2.577593 GAGGTATATCCGCGCCCC 59.422 66.667 0.00 0.00 41.99 5.80
3254 6524 3.382048 AAAGAACCGAGGTATATCCGC 57.618 47.619 0.00 0.00 41.99 5.54
3255 6525 5.225642 GGTTAAAGAACCGAGGTATATCCG 58.774 45.833 0.00 0.00 45.73 4.18
3268 6538 8.618677 GGCAATTACCTAGTATGGTTAAAGAAC 58.381 37.037 0.00 0.00 41.22 3.01
3269 6539 7.776500 GGGCAATTACCTAGTATGGTTAAAGAA 59.224 37.037 0.00 0.00 41.22 2.52
3270 6540 7.284820 GGGCAATTACCTAGTATGGTTAAAGA 58.715 38.462 0.00 0.00 41.22 2.52
3271 6541 6.204108 CGGGCAATTACCTAGTATGGTTAAAG 59.796 42.308 0.00 0.00 41.22 1.85
3272 6542 6.056884 CGGGCAATTACCTAGTATGGTTAAA 58.943 40.000 0.00 0.00 41.22 1.52
3273 6543 5.130809 ACGGGCAATTACCTAGTATGGTTAA 59.869 40.000 0.00 0.00 41.22 2.01
3274 6544 4.655186 ACGGGCAATTACCTAGTATGGTTA 59.345 41.667 0.00 0.00 41.22 2.85
3275 6545 3.457012 ACGGGCAATTACCTAGTATGGTT 59.543 43.478 0.00 0.00 41.22 3.67
3276 6546 3.043418 ACGGGCAATTACCTAGTATGGT 58.957 45.455 0.00 0.00 43.66 3.55
3277 6547 3.399330 CACGGGCAATTACCTAGTATGG 58.601 50.000 0.00 0.00 0.00 2.74
3278 6548 2.806244 GCACGGGCAATTACCTAGTATG 59.194 50.000 3.77 0.00 40.72 2.39
3279 6549 2.547218 CGCACGGGCAATTACCTAGTAT 60.547 50.000 11.77 0.00 41.24 2.12
3280 6550 1.202440 CGCACGGGCAATTACCTAGTA 60.202 52.381 11.77 0.00 41.24 1.82
3505 6776 2.490903 CAAGAAATTCTGCACCTCCTGG 59.509 50.000 0.00 0.00 39.83 4.45
3622 6893 4.647615 CCGCGGCCGAATCGATCT 62.648 66.667 33.48 0.00 36.29 2.75
3724 6995 4.523173 AGTTTCAAGGCTAAGCTTTTACCC 59.477 41.667 3.20 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.