Multiple sequence alignment - TraesCS4B01G315900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G315900 chr4B 100.000 3285 0 0 1 3285 605516216 605519500 0.000000e+00 6067.0
1 TraesCS4B01G315900 chr4B 82.473 639 103 8 195 828 183522745 183523379 4.790000e-153 551.0
2 TraesCS4B01G315900 chr4A 89.982 1637 105 26 860 2462 685338915 685340526 0.000000e+00 2060.0
3 TraesCS4B01G315900 chr4A 77.923 1069 196 30 1104 2164 743383572 743384608 5.980000e-177 630.0
4 TraesCS4B01G315900 chr4A 82.882 701 98 16 2596 3285 685342488 685343177 7.790000e-171 610.0
5 TraesCS4B01G315900 chr4A 92.414 145 5 4 3 142 591690573 591690716 5.560000e-48 202.0
6 TraesCS4B01G315900 chr7D 84.211 627 93 5 206 829 628135128 628134505 3.630000e-169 604.0
7 TraesCS4B01G315900 chr7D 79.785 465 83 10 1104 1564 2052241 2052698 8.790000e-86 327.0
8 TraesCS4B01G315900 chr7D 85.000 80 12 0 1292 1371 219847772 219847851 7.550000e-12 82.4
9 TraesCS4B01G315900 chr3D 83.488 648 100 6 195 838 562513970 562514614 6.070000e-167 597.0
10 TraesCS4B01G315900 chr3D 97.500 40 1 0 1330 1369 537023553 537023592 5.880000e-08 69.4
11 TraesCS4B01G315900 chr3D 95.000 40 2 0 1330 1369 536952575 536952614 2.740000e-06 63.9
12 TraesCS4B01G315900 chr7B 83.463 641 99 6 204 840 104298966 104298329 1.020000e-164 590.0
13 TraesCS4B01G315900 chr7B 83.814 624 92 8 209 828 339618933 339619551 4.720000e-163 584.0
14 TraesCS4B01G315900 chr7B 91.391 151 7 4 4 149 714502607 714502756 5.560000e-48 202.0
15 TraesCS4B01G315900 chr7B 91.391 151 6 5 4 147 7258930 7258780 2.000000e-47 200.0
16 TraesCS4B01G315900 chr7B 92.908 141 5 3 3 138 651346791 651346931 2.000000e-47 200.0
17 TraesCS4B01G315900 chr7B 87.838 74 9 0 1298 1371 179902113 179902040 1.620000e-13 87.9
18 TraesCS4B01G315900 chr1D 83.518 631 99 4 201 828 306222268 306222896 4.720000e-163 584.0
19 TraesCS4B01G315900 chr1D 83.553 608 96 3 204 808 426443622 426443016 1.710000e-157 566.0
20 TraesCS4B01G315900 chr1D 83.412 639 70 23 990 1603 12337326 12336699 7.960000e-156 560.0
21 TraesCS4B01G315900 chr1D 81.690 639 78 27 990 1599 12066672 12067300 2.280000e-136 496.0
22 TraesCS4B01G315900 chr1D 84.725 491 69 5 1661 2148 12336490 12336003 1.370000e-133 486.0
23 TraesCS4B01G315900 chr1D 78.014 141 27 4 1309 1447 445222340 445222478 5.840000e-13 86.1
24 TraesCS4B01G315900 chr6D 83.175 630 97 8 204 828 20134461 20135086 4.760000e-158 568.0
25 TraesCS4B01G315900 chr6D 88.333 60 7 0 1310 1369 121300824 121300765 4.550000e-09 73.1
26 TraesCS4B01G315900 chr5D 83.175 630 96 8 204 828 505372198 505371574 4.760000e-158 568.0
27 TraesCS4B01G315900 chr2A 82.407 648 103 10 200 841 66767835 66767193 3.700000e-154 555.0
28 TraesCS4B01G315900 chr2A 78.828 529 98 12 1079 1600 750551419 750550898 8.730000e-91 344.0
29 TraesCS4B01G315900 chr2A 91.781 146 6 4 3 143 718981740 718981884 7.190000e-47 198.0
30 TraesCS4B01G315900 chr2A 96.970 33 1 0 1097 1129 41996080 41996112 4.580000e-04 56.5
31 TraesCS4B01G315900 chr2D 78.505 535 96 15 1077 1600 649467558 649468084 1.890000e-87 333.0
32 TraesCS4B01G315900 chr2D 79.739 153 31 0 1310 1462 7203682 7203530 9.640000e-21 111.0
33 TraesCS4B01G315900 chr1B 84.880 291 42 2 1308 1597 14128138 14128427 3.210000e-75 292.0
34 TraesCS4B01G315900 chr1B 88.272 162 12 4 3 158 421460261 421460421 1.560000e-43 187.0
35 TraesCS4B01G315900 chr1B 88.272 162 12 4 3 158 421509219 421509379 1.560000e-43 187.0
36 TraesCS4B01G315900 chr3A 92.517 147 6 3 3 144 30349047 30348901 4.300000e-49 206.0
37 TraesCS4B01G315900 chr2B 92.000 150 6 4 3 148 320107 320254 4.300000e-49 206.0
38 TraesCS4B01G315900 chr7A 87.500 80 10 0 1292 1371 232388937 232389016 3.490000e-15 93.5
39 TraesCS4B01G315900 chr1A 78.571 140 26 4 1310 1447 540413928 540414065 4.510000e-14 89.8
40 TraesCS4B01G315900 chr5B 90.323 62 6 0 2234 2295 455491663 455491602 7.550000e-12 82.4
41 TraesCS4B01G315900 chr6A 92.500 40 3 0 1332 1371 162728587 162728626 1.270000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G315900 chr4B 605516216 605519500 3284 False 6067 6067 100.0000 1 3285 1 chr4B.!!$F2 3284
1 TraesCS4B01G315900 chr4B 183522745 183523379 634 False 551 551 82.4730 195 828 1 chr4B.!!$F1 633
2 TraesCS4B01G315900 chr4A 685338915 685343177 4262 False 1335 2060 86.4320 860 3285 2 chr4A.!!$F3 2425
3 TraesCS4B01G315900 chr4A 743383572 743384608 1036 False 630 630 77.9230 1104 2164 1 chr4A.!!$F2 1060
4 TraesCS4B01G315900 chr7D 628134505 628135128 623 True 604 604 84.2110 206 829 1 chr7D.!!$R1 623
5 TraesCS4B01G315900 chr3D 562513970 562514614 644 False 597 597 83.4880 195 838 1 chr3D.!!$F3 643
6 TraesCS4B01G315900 chr7B 104298329 104298966 637 True 590 590 83.4630 204 840 1 chr7B.!!$R2 636
7 TraesCS4B01G315900 chr7B 339618933 339619551 618 False 584 584 83.8140 209 828 1 chr7B.!!$F1 619
8 TraesCS4B01G315900 chr1D 306222268 306222896 628 False 584 584 83.5180 201 828 1 chr1D.!!$F2 627
9 TraesCS4B01G315900 chr1D 426443016 426443622 606 True 566 566 83.5530 204 808 1 chr1D.!!$R1 604
10 TraesCS4B01G315900 chr1D 12336003 12337326 1323 True 523 560 84.0685 990 2148 2 chr1D.!!$R2 1158
11 TraesCS4B01G315900 chr1D 12066672 12067300 628 False 496 496 81.6900 990 1599 1 chr1D.!!$F1 609
12 TraesCS4B01G315900 chr6D 20134461 20135086 625 False 568 568 83.1750 204 828 1 chr6D.!!$F1 624
13 TraesCS4B01G315900 chr5D 505371574 505372198 624 True 568 568 83.1750 204 828 1 chr5D.!!$R1 624
14 TraesCS4B01G315900 chr2A 66767193 66767835 642 True 555 555 82.4070 200 841 1 chr2A.!!$R1 641
15 TraesCS4B01G315900 chr2A 750550898 750551419 521 True 344 344 78.8280 1079 1600 1 chr2A.!!$R2 521
16 TraesCS4B01G315900 chr2D 649467558 649468084 526 False 333 333 78.5050 1077 1600 1 chr2D.!!$F1 523

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
466 472 0.109458 GTGTGTAGCATCGTCGGTCA 60.109 55.0 0.0 0.0 0.0 4.02 F
1031 1055 0.040067 GAAGTTTCAAGCAGCCACCG 60.040 55.0 0.0 0.0 0.0 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2181 2391 0.034059 CGGTCTTGCCAAGTGAGAGT 59.966 55.0 4.04 0.0 36.97 3.24 R
2917 5016 0.251916 ATTTGGCCGGAATCGAGACA 59.748 50.0 5.05 0.0 39.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.420725 AAGAGTAGTGGCATATGTTGTCA 57.579 39.130 4.29 0.00 37.70 3.58
23 24 5.420725 AGAGTAGTGGCATATGTTGTCAA 57.579 39.130 4.29 0.00 42.79 3.18
24 25 5.423015 AGAGTAGTGGCATATGTTGTCAAG 58.577 41.667 4.29 0.00 42.79 3.02
25 26 5.187772 AGAGTAGTGGCATATGTTGTCAAGA 59.812 40.000 4.29 0.00 42.79 3.02
26 27 5.994250 AGTAGTGGCATATGTTGTCAAGAT 58.006 37.500 4.29 0.37 42.79 2.40
27 28 5.819379 AGTAGTGGCATATGTTGTCAAGATG 59.181 40.000 5.49 2.30 42.79 2.90
28 29 4.847198 AGTGGCATATGTTGTCAAGATGA 58.153 39.130 5.49 0.00 42.79 2.92
29 30 4.637534 AGTGGCATATGTTGTCAAGATGAC 59.362 41.667 5.49 3.58 42.79 3.06
39 40 1.936547 GTCAAGATGACGGATTCAGGC 59.063 52.381 0.00 0.00 37.67 4.85
40 41 1.554617 TCAAGATGACGGATTCAGGCA 59.445 47.619 0.00 0.00 37.77 4.75
41 42 2.171237 TCAAGATGACGGATTCAGGCAT 59.829 45.455 4.70 4.70 40.62 4.40
42 43 3.387699 TCAAGATGACGGATTCAGGCATA 59.612 43.478 5.04 0.00 37.49 3.14
43 44 4.040829 TCAAGATGACGGATTCAGGCATAT 59.959 41.667 5.04 0.00 37.49 1.78
44 45 4.630644 AGATGACGGATTCAGGCATATT 57.369 40.909 5.04 0.00 37.49 1.28
45 46 4.321718 AGATGACGGATTCAGGCATATTG 58.678 43.478 5.04 0.00 37.49 1.90
46 47 3.558931 TGACGGATTCAGGCATATTGT 57.441 42.857 0.00 0.00 0.00 2.71
47 48 3.884895 TGACGGATTCAGGCATATTGTT 58.115 40.909 0.00 0.00 0.00 2.83
48 49 3.627123 TGACGGATTCAGGCATATTGTTG 59.373 43.478 0.00 0.00 0.00 3.33
49 50 3.620488 ACGGATTCAGGCATATTGTTGT 58.380 40.909 0.00 0.00 0.00 3.32
50 51 4.776349 ACGGATTCAGGCATATTGTTGTA 58.224 39.130 0.00 0.00 0.00 2.41
51 52 5.189928 ACGGATTCAGGCATATTGTTGTAA 58.810 37.500 0.00 0.00 0.00 2.41
52 53 5.827797 ACGGATTCAGGCATATTGTTGTAAT 59.172 36.000 0.00 0.00 0.00 1.89
53 54 6.995686 ACGGATTCAGGCATATTGTTGTAATA 59.004 34.615 0.00 0.00 0.00 0.98
54 55 7.665559 ACGGATTCAGGCATATTGTTGTAATAT 59.334 33.333 0.00 0.00 0.00 1.28
55 56 8.514594 CGGATTCAGGCATATTGTTGTAATATT 58.485 33.333 0.00 0.00 0.00 1.28
70 71 9.575868 TGTTGTAATATTTTGTAAGGTCCTTGA 57.424 29.630 14.84 0.00 0.00 3.02
79 80 9.753674 ATTTTGTAAGGTCCTTGAGAATAATCA 57.246 29.630 14.84 0.00 0.00 2.57
80 81 9.581289 TTTTGTAAGGTCCTTGAGAATAATCAA 57.419 29.630 14.84 3.52 34.02 2.57
81 82 9.753674 TTTGTAAGGTCCTTGAGAATAATCAAT 57.246 29.630 14.84 0.00 34.02 2.57
86 87 9.981460 AAGGTCCTTGAGAATAATCAATAAAGT 57.019 29.630 2.38 0.00 34.02 2.66
87 88 9.401058 AGGTCCTTGAGAATAATCAATAAAGTG 57.599 33.333 0.00 0.00 34.02 3.16
88 89 8.131731 GGTCCTTGAGAATAATCAATAAAGTGC 58.868 37.037 0.00 0.00 34.02 4.40
89 90 8.677300 GTCCTTGAGAATAATCAATAAAGTGCA 58.323 33.333 0.00 0.00 34.02 4.57
90 91 9.412460 TCCTTGAGAATAATCAATAAAGTGCAT 57.588 29.630 0.00 0.00 34.02 3.96
91 92 9.459640 CCTTGAGAATAATCAATAAAGTGCATG 57.540 33.333 0.00 0.00 34.02 4.06
92 93 8.861033 TTGAGAATAATCAATAAAGTGCATGC 57.139 30.769 11.82 11.82 34.02 4.06
93 94 7.998580 TGAGAATAATCAATAAAGTGCATGCA 58.001 30.769 18.46 18.46 0.00 3.96
94 95 8.635328 TGAGAATAATCAATAAAGTGCATGCAT 58.365 29.630 25.64 10.90 0.00 3.96
95 96 9.125906 GAGAATAATCAATAAAGTGCATGCATC 57.874 33.333 25.64 17.07 0.00 3.91
96 97 8.857098 AGAATAATCAATAAAGTGCATGCATCT 58.143 29.630 25.64 19.06 0.00 2.90
97 98 9.125906 GAATAATCAATAAAGTGCATGCATCTC 57.874 33.333 25.64 11.44 0.00 2.75
98 99 4.906065 TCAATAAAGTGCATGCATCTCC 57.094 40.909 25.64 11.03 0.00 3.71
99 100 3.633525 TCAATAAAGTGCATGCATCTCCC 59.366 43.478 25.64 10.61 0.00 4.30
100 101 2.804986 TAAAGTGCATGCATCTCCCA 57.195 45.000 25.64 4.61 0.00 4.37
101 102 1.471119 AAAGTGCATGCATCTCCCAG 58.529 50.000 25.64 0.00 0.00 4.45
102 103 0.622136 AAGTGCATGCATCTCCCAGA 59.378 50.000 25.64 0.00 0.00 3.86
103 104 0.844660 AGTGCATGCATCTCCCAGAT 59.155 50.000 25.64 0.00 34.74 2.90
111 112 0.250381 CATCTCCCAGATGCAGAGGC 60.250 60.000 0.61 0.00 44.69 4.70
112 113 1.417288 ATCTCCCAGATGCAGAGGCC 61.417 60.000 0.00 0.00 40.13 5.19
113 114 2.285592 TCCCAGATGCAGAGGCCA 60.286 61.111 5.01 0.00 40.13 5.36
114 115 1.918467 CTCCCAGATGCAGAGGCCAA 61.918 60.000 5.01 0.00 40.13 4.52
115 116 1.453379 CCCAGATGCAGAGGCCAAG 60.453 63.158 5.01 0.00 40.13 3.61
116 117 1.453379 CCAGATGCAGAGGCCAAGG 60.453 63.158 5.01 0.00 40.13 3.61
117 118 1.453379 CAGATGCAGAGGCCAAGGG 60.453 63.158 5.01 0.00 40.13 3.95
118 119 1.927527 AGATGCAGAGGCCAAGGGT 60.928 57.895 5.01 0.00 40.13 4.34
119 120 1.452833 GATGCAGAGGCCAAGGGTC 60.453 63.158 5.01 0.00 40.13 4.46
120 121 2.202236 GATGCAGAGGCCAAGGGTCA 62.202 60.000 5.01 0.00 40.13 4.02
121 122 1.578215 ATGCAGAGGCCAAGGGTCAT 61.578 55.000 5.01 0.00 40.13 3.06
122 123 1.452833 GCAGAGGCCAAGGGTCATC 60.453 63.158 5.01 0.00 0.00 2.92
123 124 1.225704 CAGAGGCCAAGGGTCATCC 59.774 63.158 5.01 0.00 0.00 3.51
136 137 5.860648 AGGGTCATCCTCCTTTCTAAAAA 57.139 39.130 0.00 0.00 44.06 1.94
184 185 8.698973 TTAATGAGTTAATGAAAACACCTGGA 57.301 30.769 0.00 0.00 0.00 3.86
185 186 7.595819 AATGAGTTAATGAAAACACCTGGAA 57.404 32.000 0.00 0.00 0.00 3.53
186 187 7.595819 ATGAGTTAATGAAAACACCTGGAAA 57.404 32.000 0.00 0.00 0.00 3.13
187 188 7.411486 TGAGTTAATGAAAACACCTGGAAAA 57.589 32.000 0.00 0.00 0.00 2.29
188 189 8.017418 TGAGTTAATGAAAACACCTGGAAAAT 57.983 30.769 0.00 0.00 0.00 1.82
189 190 8.141268 TGAGTTAATGAAAACACCTGGAAAATC 58.859 33.333 0.00 0.00 0.00 2.17
190 191 7.145323 AGTTAATGAAAACACCTGGAAAATCG 58.855 34.615 0.00 0.00 0.00 3.34
191 192 3.363341 TGAAAACACCTGGAAAATCGC 57.637 42.857 0.00 0.00 0.00 4.58
192 193 2.690497 TGAAAACACCTGGAAAATCGCA 59.310 40.909 0.00 0.00 0.00 5.10
193 194 2.793278 AAACACCTGGAAAATCGCAC 57.207 45.000 0.00 0.00 0.00 5.34
194 195 0.591170 AACACCTGGAAAATCGCACG 59.409 50.000 0.00 0.00 0.00 5.34
195 196 1.154225 CACCTGGAAAATCGCACGC 60.154 57.895 0.00 0.00 0.00 5.34
196 197 1.599518 ACCTGGAAAATCGCACGCA 60.600 52.632 0.00 0.00 0.00 5.24
197 198 1.169661 ACCTGGAAAATCGCACGCAA 61.170 50.000 0.00 0.00 0.00 4.85
198 199 0.729140 CCTGGAAAATCGCACGCAAC 60.729 55.000 0.00 0.00 0.00 4.17
202 203 0.385974 GAAAATCGCACGCAACAGCT 60.386 50.000 0.00 0.00 0.00 4.24
211 212 2.759795 GCAACAGCTTCCTCCCCT 59.240 61.111 0.00 0.00 0.00 4.79
356 358 7.696453 TGTTTTCAGATGTTTCTTCGAGTTTTC 59.304 33.333 0.00 0.00 0.00 2.29
361 363 7.012358 CAGATGTTTCTTCGAGTTTTCTTAGC 58.988 38.462 0.00 0.00 0.00 3.09
385 387 1.228894 TGTCCTGCTCGGGAAGACT 60.229 57.895 0.00 0.00 37.10 3.24
394 396 1.811359 CTCGGGAAGACTAGACAACGT 59.189 52.381 0.00 0.00 0.00 3.99
426 428 7.071824 CCCTGGAGATAGAATAAAGTTCTTCCT 59.928 40.741 0.00 1.88 0.00 3.36
445 449 2.901042 CCTAGCCCCTGTTCCGAC 59.099 66.667 0.00 0.00 0.00 4.79
465 471 0.801067 GGTGTGTAGCATCGTCGGTC 60.801 60.000 0.00 0.00 0.00 4.79
466 472 0.109458 GTGTGTAGCATCGTCGGTCA 60.109 55.000 0.00 0.00 0.00 4.02
468 474 1.138883 TGTAGCATCGTCGGTCAGC 59.861 57.895 0.00 0.00 0.00 4.26
503 509 2.681848 GTCTTCGACGGATCTGTCCTTA 59.318 50.000 25.58 11.18 42.73 2.69
565 571 3.253432 GTGTGTTTTCAGGTTGGATCCTC 59.747 47.826 14.23 6.14 35.37 3.71
569 575 1.271840 TTCAGGTTGGATCCTCCCGG 61.272 60.000 14.23 12.96 35.03 5.73
574 580 1.041437 GTTGGATCCTCCCGGTCTAG 58.959 60.000 14.23 0.00 35.03 2.43
606 613 2.205152 GGCGGCGGGACCTATTCTA 61.205 63.158 9.78 0.00 35.61 2.10
608 615 1.180029 GCGGCGGGACCTATTCTATA 58.820 55.000 9.78 0.00 35.61 1.31
643 651 0.171903 GGCCTTAGCACGACGACTTA 59.828 55.000 0.00 0.00 42.56 2.24
648 656 0.723414 TAGCACGACGACTTACCGAG 59.277 55.000 0.00 0.00 0.00 4.63
653 661 0.514255 CGACGACTTACCGAGTGTCA 59.486 55.000 0.00 0.00 39.19 3.58
670 678 6.569179 AGTGTCAACTACAACAAGTTTTGT 57.431 33.333 8.02 8.02 40.63 2.83
796 804 5.918426 TTTTTCGGGTGTTCCTTTTACTT 57.082 34.783 0.00 0.00 0.00 2.24
822 830 9.866798 TTCATGATTGAAGATAATAGATCGGAG 57.133 33.333 0.00 0.00 36.94 4.63
823 831 8.473219 TCATGATTGAAGATAATAGATCGGAGG 58.527 37.037 0.00 0.00 0.00 4.30
824 832 7.782897 TGATTGAAGATAATAGATCGGAGGT 57.217 36.000 0.00 0.00 0.00 3.85
825 833 8.195165 TGATTGAAGATAATAGATCGGAGGTT 57.805 34.615 0.00 0.00 0.00 3.50
826 834 8.651389 TGATTGAAGATAATAGATCGGAGGTTT 58.349 33.333 0.00 0.00 0.00 3.27
827 835 9.495572 GATTGAAGATAATAGATCGGAGGTTTT 57.504 33.333 0.00 0.00 0.00 2.43
828 836 9.853177 ATTGAAGATAATAGATCGGAGGTTTTT 57.147 29.630 0.00 0.00 0.00 1.94
840 848 9.687210 AGATCGGAGGTTTTTAAAATAAAACAC 57.313 29.630 0.55 0.00 45.41 3.32
841 849 9.465985 GATCGGAGGTTTTTAAAATAAAACACA 57.534 29.630 0.55 0.00 45.41 3.72
842 850 9.990360 ATCGGAGGTTTTTAAAATAAAACACAT 57.010 25.926 0.55 0.00 45.41 3.21
843 851 9.250624 TCGGAGGTTTTTAAAATAAAACACATG 57.749 29.630 0.55 0.00 45.41 3.21
844 852 8.491950 CGGAGGTTTTTAAAATAAAACACATGG 58.508 33.333 0.55 0.00 45.41 3.66
845 853 9.549078 GGAGGTTTTTAAAATAAAACACATGGA 57.451 29.630 0.55 0.00 45.41 3.41
855 863 8.606040 AAATAAAACACATGGAAAATCTGTGG 57.394 30.769 0.00 0.00 43.53 4.17
856 864 5.867903 AAAACACATGGAAAATCTGTGGA 57.132 34.783 0.00 0.00 43.53 4.02
857 865 4.853924 AACACATGGAAAATCTGTGGAC 57.146 40.909 0.00 0.00 43.53 4.02
858 866 3.831323 ACACATGGAAAATCTGTGGACA 58.169 40.909 0.00 0.00 43.53 4.02
872 880 4.058124 CTGTGGACAGATTCAACGAAGAA 58.942 43.478 0.04 0.00 46.59 2.52
875 883 4.058124 TGGACAGATTCAACGAAGAACAG 58.942 43.478 0.00 0.00 0.00 3.16
878 886 5.236478 GGACAGATTCAACGAAGAACAGAAA 59.764 40.000 0.00 0.00 0.00 2.52
879 887 6.292389 ACAGATTCAACGAAGAACAGAAAG 57.708 37.500 0.00 0.00 0.00 2.62
880 888 5.237344 ACAGATTCAACGAAGAACAGAAAGG 59.763 40.000 0.00 0.00 0.00 3.11
881 889 4.757149 AGATTCAACGAAGAACAGAAAGGG 59.243 41.667 0.00 0.00 0.00 3.95
885 893 3.336138 ACGAAGAACAGAAAGGGATCC 57.664 47.619 1.92 1.92 0.00 3.36
886 894 2.271800 CGAAGAACAGAAAGGGATCCG 58.728 52.381 5.45 0.00 0.00 4.18
912 920 4.247781 GGATGTCCGACCCTACGA 57.752 61.111 0.00 0.00 35.09 3.43
916 924 2.159000 GGATGTCCGACCCTACGAATTT 60.159 50.000 0.00 0.00 35.09 1.82
917 925 3.068590 GGATGTCCGACCCTACGAATTTA 59.931 47.826 0.00 0.00 35.09 1.40
919 927 4.049546 TGTCCGACCCTACGAATTTATG 57.950 45.455 0.00 0.00 35.09 1.90
921 929 2.696707 TCCGACCCTACGAATTTATGCT 59.303 45.455 0.00 0.00 35.09 3.79
937 947 1.527034 TGCTCCTCAGTTGCATGTTC 58.473 50.000 0.00 0.00 0.00 3.18
975 985 8.992349 AGGAATCAAGATTAAAATAAAAGGGGG 58.008 33.333 0.00 0.00 0.00 5.40
1023 1046 2.666619 CGTGCATGGAGAAGTTTCAAGC 60.667 50.000 0.00 0.00 0.00 4.01
1031 1055 0.040067 GAAGTTTCAAGCAGCCACCG 60.040 55.000 0.00 0.00 0.00 4.94
1045 1073 2.359478 ACCGAACATCAACCCCGC 60.359 61.111 0.00 0.00 0.00 6.13
1046 1074 3.496131 CCGAACATCAACCCCGCG 61.496 66.667 0.00 0.00 0.00 6.46
1048 1076 3.053291 GAACATCAACCCCGCGCA 61.053 61.111 8.75 0.00 0.00 6.09
1049 1077 3.322706 GAACATCAACCCCGCGCAC 62.323 63.158 8.75 0.00 0.00 5.34
1050 1078 3.842925 AACATCAACCCCGCGCACT 62.843 57.895 8.75 0.00 0.00 4.40
1051 1079 3.803082 CATCAACCCCGCGCACTG 61.803 66.667 8.75 0.00 0.00 3.66
1098 1135 1.930251 TGGCTGCTCTAGACAAGTCT 58.070 50.000 7.96 7.96 42.98 3.24
1513 1569 3.962421 CGCTACCGTCGCCTAGGG 61.962 72.222 11.72 0.44 39.17 3.53
1714 1921 1.067199 GGCACTTCATCAAAAGCGCG 61.067 55.000 0.00 0.00 35.61 6.86
1722 1929 4.107051 CAAAAGCGCGGGAGGCAG 62.107 66.667 8.83 0.00 43.84 4.85
1964 2171 0.462937 CGGGTTGCCGATGGACATTA 60.463 55.000 0.00 0.00 34.88 1.90
1968 2175 1.092921 TTGCCGATGGACATTACCGC 61.093 55.000 0.00 0.00 0.00 5.68
2013 2220 1.439644 GCCTGGACGCCAACAAAAA 59.560 52.632 0.00 0.00 30.80 1.94
2170 2380 2.579738 GGCCTCACCTTCTCGTCC 59.420 66.667 0.00 0.00 34.51 4.79
2176 2386 1.470890 CTCACCTTCTCGTCCTGAGTC 59.529 57.143 0.00 0.00 45.46 3.36
2177 2387 1.074084 TCACCTTCTCGTCCTGAGTCT 59.926 52.381 0.00 0.00 45.46 3.24
2178 2388 1.470890 CACCTTCTCGTCCTGAGTCTC 59.529 57.143 0.00 0.00 45.46 3.36
2179 2389 1.074084 ACCTTCTCGTCCTGAGTCTCA 59.926 52.381 1.78 1.78 45.46 3.27
2180 2390 1.470890 CCTTCTCGTCCTGAGTCTCAC 59.529 57.143 0.00 0.00 45.46 3.51
2181 2391 2.155279 CTTCTCGTCCTGAGTCTCACA 58.845 52.381 0.00 0.00 45.46 3.58
2182 2392 1.524848 TCTCGTCCTGAGTCTCACAC 58.475 55.000 0.00 0.00 45.46 3.82
2183 2393 1.072489 TCTCGTCCTGAGTCTCACACT 59.928 52.381 0.00 0.00 45.46 3.55
2224 2434 2.431954 ATGATCAAGTTGAGCCCAGG 57.568 50.000 17.99 0.00 30.48 4.45
2249 2459 0.179059 TGGTGTGTGCTCATCGTGTT 60.179 50.000 0.00 0.00 0.00 3.32
2302 2512 9.346725 GTCAATAAAATTCATTCTTGGTCAGAC 57.653 33.333 0.00 0.00 0.00 3.51
2317 2527 8.621286 TCTTGGTCAGACAAAGAAAAGTATTTC 58.379 33.333 16.99 0.00 44.34 2.17
2335 2545 7.813645 AGTATTTCGTGAAAAACCTTCATACC 58.186 34.615 0.00 0.00 33.56 2.73
2339 2549 3.680937 CGTGAAAAACCTTCATACCGCTA 59.319 43.478 0.00 0.00 0.00 4.26
2365 2577 2.057922 ACTTGAGGGAAAAGCTCCTGA 58.942 47.619 0.00 0.00 44.68 3.86
2366 2578 2.646798 ACTTGAGGGAAAAGCTCCTGAT 59.353 45.455 0.00 0.00 44.68 2.90
2367 2579 3.277715 CTTGAGGGAAAAGCTCCTGATC 58.722 50.000 0.00 0.00 44.68 2.92
2369 2581 1.482593 GAGGGAAAAGCTCCTGATCGA 59.517 52.381 0.00 0.00 44.68 3.59
2370 2582 1.909302 AGGGAAAAGCTCCTGATCGAA 59.091 47.619 0.00 0.00 44.68 3.71
2372 2584 2.615912 GGGAAAAGCTCCTGATCGAATG 59.384 50.000 0.00 0.00 44.68 2.67
2373 2585 2.032675 GGAAAAGCTCCTGATCGAATGC 59.967 50.000 0.00 0.00 41.61 3.56
2374 2586 1.293924 AAAGCTCCTGATCGAATGCG 58.706 50.000 0.00 0.00 39.35 4.73
2375 2587 0.176680 AAGCTCCTGATCGAATGCGT 59.823 50.000 0.00 0.00 38.98 5.24
2376 2588 0.176680 AGCTCCTGATCGAATGCGTT 59.823 50.000 0.00 0.00 38.98 4.84
2377 2589 0.302890 GCTCCTGATCGAATGCGTTG 59.697 55.000 0.00 0.00 38.98 4.10
2386 2598 1.950909 TCGAATGCGTTGGTTCCTTTT 59.049 42.857 0.00 0.00 38.98 2.27
2414 2626 9.914131 ATGTTTTCTCTTATTTTGCTTTAGTCC 57.086 29.630 0.00 0.00 0.00 3.85
2421 2633 8.635765 TCTTATTTTGCTTTAGTCCAGTTGAT 57.364 30.769 0.00 0.00 0.00 2.57
2439 2651 3.378512 TGATGAGACCTGGTGCTCTAAT 58.621 45.455 19.82 10.91 32.44 1.73
2448 2660 3.443037 CTGGTGCTCTAATCTTCGTCTG 58.557 50.000 0.00 0.00 0.00 3.51
2452 2664 3.489047 GTGCTCTAATCTTCGTCTGATGC 59.511 47.826 0.00 0.00 0.00 3.91
2457 2669 1.107114 ATCTTCGTCTGATGCGAGGT 58.893 50.000 0.00 0.00 39.61 3.85
2458 2670 0.888619 TCTTCGTCTGATGCGAGGTT 59.111 50.000 0.00 0.00 39.61 3.50
2459 2671 0.994995 CTTCGTCTGATGCGAGGTTG 59.005 55.000 0.00 0.00 39.61 3.77
2460 2672 0.389817 TTCGTCTGATGCGAGGTTGG 60.390 55.000 0.00 0.00 39.61 3.77
2461 2673 1.811266 CGTCTGATGCGAGGTTGGG 60.811 63.158 0.00 0.00 0.00 4.12
2462 2674 2.109126 GTCTGATGCGAGGTTGGGC 61.109 63.158 0.00 0.00 0.00 5.36
2463 2675 2.825836 CTGATGCGAGGTTGGGCC 60.826 66.667 0.00 0.00 37.58 5.80
2464 2676 4.776322 TGATGCGAGGTTGGGCCG 62.776 66.667 0.00 0.00 43.70 6.13
2465 2677 4.778143 GATGCGAGGTTGGGCCGT 62.778 66.667 0.00 0.00 43.70 5.68
2486 2698 5.123344 CCGTTGGGGTAGTTTCTATTTTCAG 59.877 44.000 0.00 0.00 0.00 3.02
2487 2699 5.704053 CGTTGGGGTAGTTTCTATTTTCAGT 59.296 40.000 0.00 0.00 0.00 3.41
2489 2701 6.195600 TGGGGTAGTTTCTATTTTCAGTGT 57.804 37.500 0.00 0.00 0.00 3.55
2543 4638 0.461339 ATCGCCCGGTGTGTTGATAC 60.461 55.000 0.00 0.00 0.00 2.24
2544 4639 1.079405 CGCCCGGTGTGTTGATACT 60.079 57.895 0.00 0.00 0.00 2.12
2548 4643 2.613474 GCCCGGTGTGTTGATACTTGTA 60.613 50.000 0.00 0.00 0.00 2.41
2549 4644 3.259064 CCCGGTGTGTTGATACTTGTAG 58.741 50.000 0.00 0.00 0.00 2.74
2550 4645 3.306502 CCCGGTGTGTTGATACTTGTAGT 60.307 47.826 0.00 0.00 0.00 2.73
2551 4646 4.312443 CCGGTGTGTTGATACTTGTAGTT 58.688 43.478 0.00 0.00 0.00 2.24
2552 4647 4.753107 CCGGTGTGTTGATACTTGTAGTTT 59.247 41.667 0.00 0.00 0.00 2.66
2553 4648 5.107220 CCGGTGTGTTGATACTTGTAGTTTC 60.107 44.000 0.00 0.00 0.00 2.78
2554 4649 5.107220 CGGTGTGTTGATACTTGTAGTTTCC 60.107 44.000 0.00 0.00 0.00 3.13
2555 4650 5.995897 GGTGTGTTGATACTTGTAGTTTCCT 59.004 40.000 0.00 0.00 0.00 3.36
2556 4651 7.156673 GGTGTGTTGATACTTGTAGTTTCCTA 58.843 38.462 0.00 0.00 0.00 2.94
2557 4652 7.658575 GGTGTGTTGATACTTGTAGTTTCCTAA 59.341 37.037 0.00 0.00 0.00 2.69
2558 4653 8.709646 GTGTGTTGATACTTGTAGTTTCCTAAG 58.290 37.037 0.00 0.00 0.00 2.18
2559 4654 8.426489 TGTGTTGATACTTGTAGTTTCCTAAGT 58.574 33.333 0.00 0.00 37.21 2.24
2560 4655 9.918630 GTGTTGATACTTGTAGTTTCCTAAGTA 57.081 33.333 0.00 0.00 39.22 2.24
2568 4663 9.052759 ACTTGTAGTTTCCTAAGTATGTTTGTG 57.947 33.333 0.00 0.00 32.05 3.33
2569 4664 9.268268 CTTGTAGTTTCCTAAGTATGTTTGTGA 57.732 33.333 0.00 0.00 0.00 3.58
2570 4665 9.616156 TTGTAGTTTCCTAAGTATGTTTGTGAA 57.384 29.630 0.00 0.00 0.00 3.18
2571 4666 9.787435 TGTAGTTTCCTAAGTATGTTTGTGAAT 57.213 29.630 0.00 0.00 0.00 2.57
2574 4669 8.576442 AGTTTCCTAAGTATGTTTGTGAATTGG 58.424 33.333 0.00 0.00 0.00 3.16
2575 4670 8.573035 GTTTCCTAAGTATGTTTGTGAATTGGA 58.427 33.333 0.00 0.00 0.00 3.53
2576 4671 8.877864 TTCCTAAGTATGTTTGTGAATTGGAT 57.122 30.769 0.00 0.00 0.00 3.41
2577 4672 8.279970 TCCTAAGTATGTTTGTGAATTGGATG 57.720 34.615 0.00 0.00 0.00 3.51
2578 4673 8.106462 TCCTAAGTATGTTTGTGAATTGGATGA 58.894 33.333 0.00 0.00 0.00 2.92
2579 4674 8.906867 CCTAAGTATGTTTGTGAATTGGATGAT 58.093 33.333 0.00 0.00 0.00 2.45
2582 4677 9.643693 AAGTATGTTTGTGAATTGGATGATTTC 57.356 29.630 0.00 0.00 0.00 2.17
2583 4678 8.805175 AGTATGTTTGTGAATTGGATGATTTCA 58.195 29.630 0.00 0.00 0.00 2.69
2584 4679 9.590451 GTATGTTTGTGAATTGGATGATTTCAT 57.410 29.630 0.00 0.00 39.70 2.57
2587 4682 9.993454 TGTTTGTGAATTGGATGATTTCATTAA 57.007 25.926 0.00 0.00 36.57 1.40
2632 4727 0.031994 GCGTTGACCCTGCATTGTTT 59.968 50.000 0.00 0.00 0.00 2.83
2652 4747 6.093404 TGTTTCTCGTGTCATAGAACATCTC 58.907 40.000 1.23 0.00 31.62 2.75
2660 4755 6.293900 CGTGTCATAGAACATCTCTAGCAGAT 60.294 42.308 0.00 0.44 43.33 2.90
2662 4757 6.774656 TGTCATAGAACATCTCTAGCAGATCA 59.225 38.462 0.00 0.00 40.20 2.92
2713 4810 1.455248 TTTTTACGGGGATTGAGCGG 58.545 50.000 0.00 0.00 0.00 5.52
2723 4821 3.119602 GGGGATTGAGCGGAAAAACTTAC 60.120 47.826 0.00 0.00 0.00 2.34
2725 4823 3.756963 GGATTGAGCGGAAAAACTTACCT 59.243 43.478 0.00 0.00 0.00 3.08
2736 4834 4.302559 AAAACTTACCTGACCTGATCCC 57.697 45.455 0.00 0.00 0.00 3.85
2741 4839 2.044793 ACCTGACCTGATCCCTCAAA 57.955 50.000 0.00 0.00 0.00 2.69
2742 4840 2.566746 ACCTGACCTGATCCCTCAAAT 58.433 47.619 0.00 0.00 0.00 2.32
2743 4841 2.507471 ACCTGACCTGATCCCTCAAATC 59.493 50.000 0.00 0.00 0.00 2.17
2744 4842 2.484417 CCTGACCTGATCCCTCAAATCG 60.484 54.545 0.00 0.00 0.00 3.34
2745 4843 1.486310 TGACCTGATCCCTCAAATCGG 59.514 52.381 0.00 0.00 0.00 4.18
2746 4844 0.181350 ACCTGATCCCTCAAATCGGC 59.819 55.000 0.00 0.00 0.00 5.54
2750 4848 3.774599 ATCCCTCAAATCGGCCGGC 62.775 63.158 27.83 21.18 0.00 6.13
2756 4854 4.796495 AAATCGGCCGGCTGACCC 62.796 66.667 39.38 15.27 33.73 4.46
2773 4871 5.423704 TGACCCGTACATATTTTTGAGGA 57.576 39.130 0.00 0.00 0.00 3.71
2817 4915 2.092968 TCCCTTGGATGTTCAGGATTCG 60.093 50.000 0.00 0.00 0.00 3.34
2818 4916 2.292267 CCTTGGATGTTCAGGATTCGG 58.708 52.381 0.00 0.00 0.00 4.30
2821 4919 0.819666 GGATGTTCAGGATTCGGGGC 60.820 60.000 0.00 0.00 0.00 5.80
2822 4920 0.107214 GATGTTCAGGATTCGGGGCA 60.107 55.000 0.00 0.00 0.00 5.36
2823 4921 0.331278 ATGTTCAGGATTCGGGGCAA 59.669 50.000 0.00 0.00 0.00 4.52
2824 4922 0.111446 TGTTCAGGATTCGGGGCAAA 59.889 50.000 0.00 0.00 0.00 3.68
2866 4965 0.251209 GGTTGGTGGGAGGGAAGTTC 60.251 60.000 0.00 0.00 0.00 3.01
2877 4976 2.573915 GAGGGAAGTTCCAGATCCAACT 59.426 50.000 23.33 8.39 38.64 3.16
2890 4989 4.036518 AGATCCAACTGCCAGAATAGTCT 58.963 43.478 0.00 0.00 32.85 3.24
2891 4990 5.069648 CAGATCCAACTGCCAGAATAGTCTA 59.930 44.000 0.00 0.00 30.85 2.59
2892 4991 5.843421 AGATCCAACTGCCAGAATAGTCTAT 59.157 40.000 0.00 0.00 30.85 1.98
2895 4994 5.189736 TCCAACTGCCAGAATAGTCTATGTT 59.810 40.000 0.00 0.00 30.85 2.71
2908 5007 3.385111 AGTCTATGTTCCGACCAAGATCC 59.615 47.826 0.00 0.00 0.00 3.36
2912 5011 1.134818 TGTTCCGACCAAGATCCATCG 60.135 52.381 0.00 0.00 0.00 3.84
2914 5013 0.459899 TCCGACCAAGATCCATCGTG 59.540 55.000 0.00 0.00 36.29 4.35
2916 5015 1.560923 CGACCAAGATCCATCGTGTC 58.439 55.000 2.43 0.67 35.02 3.67
2917 5016 1.135139 CGACCAAGATCCATCGTGTCT 59.865 52.381 2.43 0.00 35.02 3.41
2931 5030 0.802607 GTGTCTGTCTCGATTCCGGC 60.803 60.000 0.00 0.00 36.24 6.13
2940 5039 1.065551 CTCGATTCCGGCCAAATTTCC 59.934 52.381 2.24 0.00 36.24 3.13
2942 5041 0.527600 GATTCCGGCCAAATTTCCGC 60.528 55.000 11.77 5.66 44.01 5.54
2943 5042 0.970427 ATTCCGGCCAAATTTCCGCT 60.970 50.000 11.77 0.00 44.01 5.52
2946 5045 2.578664 GGCCAAATTTCCGCTGGG 59.421 61.111 0.00 0.00 0.00 4.45
2963 5062 1.078918 GGCAGGCCCAATTCAAAGC 60.079 57.895 0.00 0.00 0.00 3.51
2964 5063 1.446618 GCAGGCCCAATTCAAAGCG 60.447 57.895 0.00 0.00 0.00 4.68
2977 5076 7.012327 CCCAATTCAAAGCGATTCTAGTTGATA 59.988 37.037 5.23 0.00 0.00 2.15
2979 5078 9.591404 CAATTCAAAGCGATTCTAGTTGATATC 57.409 33.333 0.00 0.00 0.00 1.63
2980 5079 8.893219 ATTCAAAGCGATTCTAGTTGATATCA 57.107 30.769 0.00 0.00 0.00 2.15
2981 5080 7.936950 TCAAAGCGATTCTAGTTGATATCAG 57.063 36.000 5.39 0.00 0.00 2.90
2988 5087 2.297315 TCTAGTTGATATCAGCAGGCCG 59.703 50.000 20.08 5.17 0.00 6.13
2990 5089 0.179045 GTTGATATCAGCAGGCCGGT 60.179 55.000 14.07 0.00 0.00 5.28
2991 5090 0.179048 TTGATATCAGCAGGCCGGTG 60.179 55.000 17.14 17.14 44.83 4.94
3022 5121 1.213296 TGCTATTCCTTGGGAGGGAC 58.787 55.000 0.00 0.00 43.72 4.46
3032 5131 2.660064 GGGAGGGACAGCGACATGT 61.660 63.158 0.00 0.00 35.68 3.21
3033 5132 1.448540 GGAGGGACAGCGACATGTG 60.449 63.158 1.15 0.00 32.25 3.21
3036 5135 2.046892 GGACAGCGACATGTGGCT 60.047 61.111 27.41 27.41 45.59 4.75
3059 5159 2.660552 CGCGGTTGTTCGTGGACT 60.661 61.111 0.00 0.00 37.05 3.85
3068 5168 0.963962 GTTCGTGGACTGGAGGTACA 59.036 55.000 0.00 0.00 36.22 2.90
3078 5178 1.757118 CTGGAGGTACATCGGTGTCAT 59.243 52.381 3.56 0.00 39.77 3.06
3089 5189 1.585006 GGTGTCATCGACGAGGTGT 59.415 57.895 9.58 0.00 34.95 4.16
3122 5222 1.517832 AGCAGTCGCGGCTTCTATT 59.482 52.632 12.14 0.00 45.49 1.73
3140 5240 2.887568 GATGCTCCACCGCACGAG 60.888 66.667 0.00 0.00 43.61 4.18
3156 5256 3.966930 GAGCGGGAGAGGGTGAGGT 62.967 68.421 0.00 0.00 0.00 3.85
3169 5269 0.613260 GTGAGGTGGCATGTGAGGTA 59.387 55.000 0.00 0.00 0.00 3.08
3172 5272 1.486310 GAGGTGGCATGTGAGGTATGA 59.514 52.381 0.00 0.00 0.00 2.15
3178 5279 1.481240 CATGTGAGGTATGAGCGACG 58.519 55.000 0.00 0.00 0.00 5.12
3187 5288 2.607668 TATGAGCGACGCCTGGTTCG 62.608 60.000 17.79 13.50 0.00 3.95
3194 5295 2.256158 CGCCTGGTTCGTCGTGTA 59.744 61.111 0.00 0.00 0.00 2.90
3195 5296 1.153901 CGCCTGGTTCGTCGTGTAT 60.154 57.895 0.00 0.00 0.00 2.29
3201 5302 0.804933 GGTTCGTCGTGTATGGAGGC 60.805 60.000 0.00 0.00 0.00 4.70
3202 5303 1.138036 TTCGTCGTGTATGGAGGCG 59.862 57.895 0.00 0.00 0.00 5.52
3206 5307 2.106332 CGTGTATGGAGGCGGACC 59.894 66.667 0.00 0.00 0.00 4.46
3227 5328 2.821810 CGGTGTGTGTGGTGTGCA 60.822 61.111 0.00 0.00 0.00 4.57
3229 5330 1.451207 GGTGTGTGTGGTGTGCAGA 60.451 57.895 0.00 0.00 0.00 4.26
3243 5344 3.393472 GCAGAGGCAAGGATACAGG 57.607 57.895 0.00 0.00 40.72 4.00
3249 5350 1.204146 GGCAAGGATACAGGGAGACA 58.796 55.000 0.00 0.00 41.41 3.41
3271 5372 3.587498 TGGGTGAGAGGAAGAAGAAGAA 58.413 45.455 0.00 0.00 0.00 2.52
3278 5379 3.580895 AGAGGAAGAAGAAGAAGACCACC 59.419 47.826 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.420725 TGACAACATATGCCACTACTCTT 57.579 39.130 1.58 0.00 0.00 2.85
1 2 5.187772 TCTTGACAACATATGCCACTACTCT 59.812 40.000 1.58 0.00 0.00 3.24
2 3 5.419542 TCTTGACAACATATGCCACTACTC 58.580 41.667 1.58 0.00 0.00 2.59
4 5 5.817296 TCATCTTGACAACATATGCCACTAC 59.183 40.000 1.58 0.00 0.00 2.73
5 6 5.817296 GTCATCTTGACAACATATGCCACTA 59.183 40.000 1.58 0.00 46.22 2.74
6 7 4.637534 GTCATCTTGACAACATATGCCACT 59.362 41.667 1.58 0.00 46.22 4.00
7 8 4.913376 GTCATCTTGACAACATATGCCAC 58.087 43.478 1.58 0.00 46.22 5.01
19 20 1.936547 GCCTGAATCCGTCATCTTGAC 59.063 52.381 0.00 0.00 43.65 3.18
20 21 1.554617 TGCCTGAATCCGTCATCTTGA 59.445 47.619 0.00 0.00 35.07 3.02
21 22 2.028420 TGCCTGAATCCGTCATCTTG 57.972 50.000 0.00 0.00 35.07 3.02
22 23 4.630644 ATATGCCTGAATCCGTCATCTT 57.369 40.909 0.00 0.00 35.07 2.40
23 24 4.202398 ACAATATGCCTGAATCCGTCATCT 60.202 41.667 0.00 0.00 35.07 2.90
24 25 4.067896 ACAATATGCCTGAATCCGTCATC 58.932 43.478 0.00 0.00 35.07 2.92
25 26 4.090761 ACAATATGCCTGAATCCGTCAT 57.909 40.909 0.00 0.00 35.07 3.06
26 27 3.558931 ACAATATGCCTGAATCCGTCA 57.441 42.857 0.00 0.00 34.17 4.35
27 28 3.627577 ACAACAATATGCCTGAATCCGTC 59.372 43.478 0.00 0.00 0.00 4.79
28 29 3.620488 ACAACAATATGCCTGAATCCGT 58.380 40.909 0.00 0.00 0.00 4.69
29 30 5.749596 TTACAACAATATGCCTGAATCCG 57.250 39.130 0.00 0.00 0.00 4.18
44 45 9.575868 TCAAGGACCTTACAAAATATTACAACA 57.424 29.630 6.38 0.00 0.00 3.33
53 54 9.753674 TGATTATTCTCAAGGACCTTACAAAAT 57.246 29.630 6.38 7.35 0.00 1.82
54 55 9.581289 TTGATTATTCTCAAGGACCTTACAAAA 57.419 29.630 6.38 0.00 31.65 2.44
55 56 9.753674 ATTGATTATTCTCAAGGACCTTACAAA 57.246 29.630 6.38 1.75 38.47 2.83
60 61 9.981460 ACTTTATTGATTATTCTCAAGGACCTT 57.019 29.630 0.00 0.00 38.47 3.50
61 62 9.401058 CACTTTATTGATTATTCTCAAGGACCT 57.599 33.333 0.00 0.00 38.47 3.85
62 63 8.131731 GCACTTTATTGATTATTCTCAAGGACC 58.868 37.037 0.00 0.00 38.47 4.46
63 64 8.677300 TGCACTTTATTGATTATTCTCAAGGAC 58.323 33.333 0.00 0.00 38.47 3.85
64 65 8.806429 TGCACTTTATTGATTATTCTCAAGGA 57.194 30.769 0.00 0.00 38.47 3.36
65 66 9.459640 CATGCACTTTATTGATTATTCTCAAGG 57.540 33.333 0.00 0.00 38.47 3.61
66 67 8.965172 GCATGCACTTTATTGATTATTCTCAAG 58.035 33.333 14.21 0.00 38.47 3.02
67 68 8.468399 TGCATGCACTTTATTGATTATTCTCAA 58.532 29.630 18.46 0.00 39.35 3.02
68 69 7.998580 TGCATGCACTTTATTGATTATTCTCA 58.001 30.769 18.46 0.00 0.00 3.27
69 70 9.125906 GATGCATGCACTTTATTGATTATTCTC 57.874 33.333 25.37 6.37 0.00 2.87
70 71 8.857098 AGATGCATGCACTTTATTGATTATTCT 58.143 29.630 25.37 13.50 0.00 2.40
71 72 9.125906 GAGATGCATGCACTTTATTGATTATTC 57.874 33.333 25.37 11.25 0.00 1.75
72 73 8.086522 GGAGATGCATGCACTTTATTGATTATT 58.913 33.333 25.37 0.52 0.00 1.40
73 74 7.309621 GGGAGATGCATGCACTTTATTGATTAT 60.310 37.037 25.37 1.05 0.00 1.28
74 75 6.016024 GGGAGATGCATGCACTTTATTGATTA 60.016 38.462 25.37 0.00 0.00 1.75
75 76 5.221382 GGGAGATGCATGCACTTTATTGATT 60.221 40.000 25.37 1.94 0.00 2.57
76 77 4.280174 GGGAGATGCATGCACTTTATTGAT 59.720 41.667 25.37 2.84 0.00 2.57
77 78 3.633525 GGGAGATGCATGCACTTTATTGA 59.366 43.478 25.37 0.00 0.00 2.57
78 79 3.382227 TGGGAGATGCATGCACTTTATTG 59.618 43.478 25.37 0.00 0.00 1.90
79 80 3.634504 TGGGAGATGCATGCACTTTATT 58.365 40.909 25.37 5.55 0.00 1.40
80 81 3.117776 TCTGGGAGATGCATGCACTTTAT 60.118 43.478 25.37 6.46 0.00 1.40
81 82 2.239402 TCTGGGAGATGCATGCACTTTA 59.761 45.455 25.37 6.77 0.00 1.85
82 83 1.005097 TCTGGGAGATGCATGCACTTT 59.995 47.619 25.37 11.56 0.00 2.66
83 84 0.622136 TCTGGGAGATGCATGCACTT 59.378 50.000 25.37 14.44 0.00 3.16
84 85 0.844660 ATCTGGGAGATGCATGCACT 59.155 50.000 25.37 21.29 32.80 4.40
85 86 0.952280 CATCTGGGAGATGCATGCAC 59.048 55.000 25.37 16.77 44.69 4.57
86 87 3.414486 CATCTGGGAGATGCATGCA 57.586 52.632 25.04 25.04 44.69 3.96
93 94 1.417288 GGCCTCTGCATCTGGGAGAT 61.417 60.000 0.00 0.00 43.58 2.75
94 95 2.068821 GGCCTCTGCATCTGGGAGA 61.069 63.158 0.00 0.00 42.24 3.71
95 96 1.918467 TTGGCCTCTGCATCTGGGAG 61.918 60.000 3.32 0.00 40.13 4.30
96 97 1.918467 CTTGGCCTCTGCATCTGGGA 61.918 60.000 3.32 0.00 40.13 4.37
97 98 1.453379 CTTGGCCTCTGCATCTGGG 60.453 63.158 3.32 0.00 40.13 4.45
98 99 1.453379 CCTTGGCCTCTGCATCTGG 60.453 63.158 3.32 0.00 40.13 3.86
99 100 1.453379 CCCTTGGCCTCTGCATCTG 60.453 63.158 3.32 0.00 40.13 2.90
100 101 1.919600 GACCCTTGGCCTCTGCATCT 61.920 60.000 3.32 0.00 40.13 2.90
101 102 1.452833 GACCCTTGGCCTCTGCATC 60.453 63.158 3.32 0.00 40.13 3.91
102 103 1.578215 ATGACCCTTGGCCTCTGCAT 61.578 55.000 3.32 0.00 40.13 3.96
103 104 2.202236 GATGACCCTTGGCCTCTGCA 62.202 60.000 3.32 0.00 40.13 4.41
104 105 1.452833 GATGACCCTTGGCCTCTGC 60.453 63.158 3.32 0.00 0.00 4.26
105 106 1.225704 GGATGACCCTTGGCCTCTG 59.774 63.158 3.32 0.00 0.00 3.35
106 107 1.083706 AGGATGACCCTTGGCCTCT 59.916 57.895 3.32 0.00 44.85 3.69
107 108 3.746957 AGGATGACCCTTGGCCTC 58.253 61.111 3.32 0.00 44.85 4.70
158 159 9.308000 TCCAGGTGTTTTCATTAACTCATTAAT 57.692 29.630 0.00 0.00 40.91 1.40
159 160 8.698973 TCCAGGTGTTTTCATTAACTCATTAA 57.301 30.769 0.00 0.00 34.78 1.40
160 161 8.698973 TTCCAGGTGTTTTCATTAACTCATTA 57.301 30.769 0.00 0.00 0.00 1.90
161 162 7.595819 TTCCAGGTGTTTTCATTAACTCATT 57.404 32.000 0.00 0.00 0.00 2.57
162 163 7.595819 TTTCCAGGTGTTTTCATTAACTCAT 57.404 32.000 0.00 0.00 0.00 2.90
163 164 7.411486 TTTTCCAGGTGTTTTCATTAACTCA 57.589 32.000 0.00 0.00 0.00 3.41
164 165 7.326063 CGATTTTCCAGGTGTTTTCATTAACTC 59.674 37.037 0.00 0.00 0.00 3.01
165 166 7.145323 CGATTTTCCAGGTGTTTTCATTAACT 58.855 34.615 0.00 0.00 0.00 2.24
166 167 6.128929 GCGATTTTCCAGGTGTTTTCATTAAC 60.129 38.462 0.00 0.00 0.00 2.01
167 168 5.923684 GCGATTTTCCAGGTGTTTTCATTAA 59.076 36.000 0.00 0.00 0.00 1.40
168 169 5.010112 TGCGATTTTCCAGGTGTTTTCATTA 59.990 36.000 0.00 0.00 0.00 1.90
169 170 4.202202 TGCGATTTTCCAGGTGTTTTCATT 60.202 37.500 0.00 0.00 0.00 2.57
170 171 3.320541 TGCGATTTTCCAGGTGTTTTCAT 59.679 39.130 0.00 0.00 0.00 2.57
171 172 2.690497 TGCGATTTTCCAGGTGTTTTCA 59.310 40.909 0.00 0.00 0.00 2.69
172 173 3.049912 GTGCGATTTTCCAGGTGTTTTC 58.950 45.455 0.00 0.00 0.00 2.29
173 174 2.542824 CGTGCGATTTTCCAGGTGTTTT 60.543 45.455 0.00 0.00 0.00 2.43
174 175 1.001815 CGTGCGATTTTCCAGGTGTTT 60.002 47.619 0.00 0.00 0.00 2.83
175 176 0.591170 CGTGCGATTTTCCAGGTGTT 59.409 50.000 0.00 0.00 0.00 3.32
176 177 1.852067 GCGTGCGATTTTCCAGGTGT 61.852 55.000 0.00 0.00 0.00 4.16
177 178 1.154225 GCGTGCGATTTTCCAGGTG 60.154 57.895 0.00 0.00 0.00 4.00
178 179 1.169661 TTGCGTGCGATTTTCCAGGT 61.170 50.000 0.00 0.00 0.00 4.00
179 180 0.729140 GTTGCGTGCGATTTTCCAGG 60.729 55.000 0.00 0.00 0.00 4.45
180 181 0.040514 TGTTGCGTGCGATTTTCCAG 60.041 50.000 0.00 0.00 0.00 3.86
181 182 0.040514 CTGTTGCGTGCGATTTTCCA 60.041 50.000 0.00 0.00 0.00 3.53
182 183 1.337110 GCTGTTGCGTGCGATTTTCC 61.337 55.000 0.00 0.00 0.00 3.13
183 184 0.385974 AGCTGTTGCGTGCGATTTTC 60.386 50.000 0.00 0.00 45.42 2.29
184 185 0.030638 AAGCTGTTGCGTGCGATTTT 59.969 45.000 0.00 0.00 45.42 1.82
185 186 0.385974 GAAGCTGTTGCGTGCGATTT 60.386 50.000 0.00 0.00 45.42 2.17
186 187 1.207593 GAAGCTGTTGCGTGCGATT 59.792 52.632 0.00 0.00 45.42 3.34
187 188 2.680913 GGAAGCTGTTGCGTGCGAT 61.681 57.895 0.00 0.00 45.42 4.58
188 189 3.345808 GGAAGCTGTTGCGTGCGA 61.346 61.111 0.00 0.00 45.42 5.10
189 190 3.300667 GAGGAAGCTGTTGCGTGCG 62.301 63.158 0.00 0.00 42.88 5.34
190 191 2.558313 GAGGAAGCTGTTGCGTGC 59.442 61.111 0.00 0.00 45.42 5.34
191 192 2.328099 GGGAGGAAGCTGTTGCGTG 61.328 63.158 0.00 0.00 45.42 5.34
192 193 2.032681 GGGAGGAAGCTGTTGCGT 59.967 61.111 0.00 0.00 45.42 5.24
193 194 1.899437 TAGGGGAGGAAGCTGTTGCG 61.899 60.000 0.00 0.00 45.42 4.85
194 195 0.328258 TTAGGGGAGGAAGCTGTTGC 59.672 55.000 0.00 0.00 40.05 4.17
195 196 2.879103 TTTAGGGGAGGAAGCTGTTG 57.121 50.000 0.00 0.00 0.00 3.33
196 197 3.895704 TTTTTAGGGGAGGAAGCTGTT 57.104 42.857 0.00 0.00 0.00 3.16
259 260 4.803426 CCACTGGAGACGAGGCGC 62.803 72.222 0.00 0.00 0.00 6.53
356 358 1.461127 GAGCAGGACACAAACGCTAAG 59.539 52.381 0.00 0.00 31.86 2.18
361 363 2.317609 CCCGAGCAGGACACAAACG 61.318 63.158 0.00 0.00 45.00 3.60
385 387 0.320374 CAGGGAGCCAACGTTGTCTA 59.680 55.000 25.63 0.00 0.00 2.59
394 396 2.568546 TTCTATCTCCAGGGAGCCAA 57.431 50.000 10.55 0.00 41.71 4.52
426 428 3.399181 CGGAACAGGGGCTAGGCA 61.399 66.667 19.14 0.00 0.00 4.75
445 449 1.872234 CCGACGATGCTACACACCG 60.872 63.158 0.00 0.00 0.00 4.94
503 509 1.134280 CCAGATCCGAGCAAATCCACT 60.134 52.381 0.00 0.00 0.00 4.00
565 571 2.731572 TGAAGAGTAACCTAGACCGGG 58.268 52.381 6.32 0.00 0.00 5.73
569 575 3.548415 CGCCGATGAAGAGTAACCTAGAC 60.548 52.174 0.00 0.00 0.00 2.59
574 580 1.152383 GCCGCCGATGAAGAGTAACC 61.152 60.000 0.00 0.00 0.00 2.85
596 603 3.119424 GGACCAGCGCTATAGAATAGGTC 60.119 52.174 23.84 23.84 42.63 3.85
597 604 2.826725 GGACCAGCGCTATAGAATAGGT 59.173 50.000 10.99 11.10 0.00 3.08
598 605 3.093057 AGGACCAGCGCTATAGAATAGG 58.907 50.000 10.99 7.17 0.00 2.57
606 613 1.194781 CCCCATAGGACCAGCGCTAT 61.195 60.000 10.99 0.00 38.24 2.97
608 615 3.164269 CCCCATAGGACCAGCGCT 61.164 66.667 2.64 2.64 38.24 5.92
643 651 3.118884 ACTTGTTGTAGTTGACACTCGGT 60.119 43.478 0.00 0.00 37.96 4.69
648 656 5.798434 GGACAAAACTTGTTGTAGTTGACAC 59.202 40.000 0.00 0.00 45.52 3.67
653 661 3.181494 GCCGGACAAAACTTGTTGTAGTT 60.181 43.478 5.05 0.00 45.52 2.24
713 721 0.033366 TACAAGCACTGAAGCGAGCA 59.967 50.000 0.00 0.00 40.15 4.26
747 755 9.927081 ATAAAAGTTACATCCAGATCCAAAGAT 57.073 29.630 0.00 0.00 34.57 2.40
775 783 5.418209 TGAAAGTAAAAGGAACACCCGAAAA 59.582 36.000 0.00 0.00 40.87 2.29
780 788 6.590234 ATCATGAAAGTAAAAGGAACACCC 57.410 37.500 0.00 0.00 0.00 4.61
796 804 9.866798 CTCCGATCTATTATCTTCAATCATGAA 57.133 33.333 0.00 0.00 43.18 2.57
814 822 9.687210 GTGTTTTATTTTAAAAACCTCCGATCT 57.313 29.630 4.44 0.00 44.89 2.75
815 823 9.465985 TGTGTTTTATTTTAAAAACCTCCGATC 57.534 29.630 4.44 0.00 44.89 3.69
816 824 9.990360 ATGTGTTTTATTTTAAAAACCTCCGAT 57.010 25.926 4.44 0.00 44.89 4.18
817 825 9.250624 CATGTGTTTTATTTTAAAAACCTCCGA 57.749 29.630 4.44 0.00 44.89 4.55
818 826 8.491950 CCATGTGTTTTATTTTAAAAACCTCCG 58.508 33.333 4.44 0.00 44.89 4.63
819 827 9.549078 TCCATGTGTTTTATTTTAAAAACCTCC 57.451 29.630 4.44 0.00 44.89 4.30
829 837 9.054922 CCACAGATTTTCCATGTGTTTTATTTT 57.945 29.630 4.10 0.00 42.17 1.82
830 838 8.428063 TCCACAGATTTTCCATGTGTTTTATTT 58.572 29.630 4.10 0.00 42.17 1.40
831 839 7.872483 GTCCACAGATTTTCCATGTGTTTTATT 59.128 33.333 4.10 0.00 42.17 1.40
832 840 7.015098 TGTCCACAGATTTTCCATGTGTTTTAT 59.985 33.333 4.10 0.00 42.17 1.40
833 841 6.322456 TGTCCACAGATTTTCCATGTGTTTTA 59.678 34.615 4.10 0.00 42.17 1.52
834 842 5.128499 TGTCCACAGATTTTCCATGTGTTTT 59.872 36.000 4.10 0.00 42.17 2.43
835 843 4.648762 TGTCCACAGATTTTCCATGTGTTT 59.351 37.500 4.10 0.00 42.17 2.83
836 844 4.214310 TGTCCACAGATTTTCCATGTGTT 58.786 39.130 4.10 0.00 42.17 3.32
837 845 3.822735 CTGTCCACAGATTTTCCATGTGT 59.177 43.478 0.00 0.00 46.59 3.72
838 846 4.430137 CTGTCCACAGATTTTCCATGTG 57.570 45.455 0.00 0.00 46.59 3.21
850 858 3.653344 TCTTCGTTGAATCTGTCCACAG 58.347 45.455 0.00 0.00 45.08 3.66
851 859 3.744238 TCTTCGTTGAATCTGTCCACA 57.256 42.857 0.00 0.00 0.00 4.17
852 860 3.807622 TGTTCTTCGTTGAATCTGTCCAC 59.192 43.478 0.00 0.00 0.00 4.02
853 861 4.058124 CTGTTCTTCGTTGAATCTGTCCA 58.942 43.478 0.00 0.00 0.00 4.02
854 862 4.307432 TCTGTTCTTCGTTGAATCTGTCC 58.693 43.478 0.00 0.00 0.00 4.02
855 863 5.907197 TTCTGTTCTTCGTTGAATCTGTC 57.093 39.130 0.00 0.00 0.00 3.51
856 864 5.237344 CCTTTCTGTTCTTCGTTGAATCTGT 59.763 40.000 0.00 0.00 0.00 3.41
857 865 5.334414 CCCTTTCTGTTCTTCGTTGAATCTG 60.334 44.000 0.00 0.00 0.00 2.90
858 866 4.757149 CCCTTTCTGTTCTTCGTTGAATCT 59.243 41.667 0.00 0.00 0.00 2.40
866 874 2.271800 CGGATCCCTTTCTGTTCTTCG 58.728 52.381 6.06 0.00 0.00 3.79
867 875 3.003480 CACGGATCCCTTTCTGTTCTTC 58.997 50.000 6.06 0.00 32.86 2.87
872 880 0.400213 TTGCACGGATCCCTTTCTGT 59.600 50.000 6.06 0.00 35.59 3.41
875 883 1.064060 CGAATTGCACGGATCCCTTTC 59.936 52.381 6.06 0.15 0.00 2.62
878 886 4.540153 CGAATTGCACGGATCCCT 57.460 55.556 6.06 0.00 0.00 4.20
902 910 3.057734 GGAGCATAAATTCGTAGGGTCG 58.942 50.000 0.00 0.00 34.09 4.79
908 916 4.570772 GCAACTGAGGAGCATAAATTCGTA 59.429 41.667 0.00 0.00 0.00 3.43
912 920 4.708421 ACATGCAACTGAGGAGCATAAATT 59.292 37.500 12.38 0.00 46.39 1.82
916 924 3.273434 GAACATGCAACTGAGGAGCATA 58.727 45.455 12.38 0.00 46.39 3.14
919 927 1.527034 TGAACATGCAACTGAGGAGC 58.473 50.000 0.00 0.00 0.00 4.70
921 929 3.490439 TCTTGAACATGCAACTGAGGA 57.510 42.857 0.00 0.00 0.00 3.71
949 959 8.992349 CCCCCTTTTATTTTAATCTTGATTCCT 58.008 33.333 0.00 0.00 0.00 3.36
962 972 4.175172 AGTCCAATGCCCCCTTTTATTTT 58.825 39.130 0.00 0.00 0.00 1.82
963 973 3.802132 AGTCCAATGCCCCCTTTTATTT 58.198 40.909 0.00 0.00 0.00 1.40
966 976 4.405756 TTTAGTCCAATGCCCCCTTTTA 57.594 40.909 0.00 0.00 0.00 1.52
968 978 3.490060 ATTTAGTCCAATGCCCCCTTT 57.510 42.857 0.00 0.00 0.00 3.11
971 981 5.685520 TTTAAATTTAGTCCAATGCCCCC 57.314 39.130 0.00 0.00 0.00 5.40
1009 1027 1.268079 GTGGCTGCTTGAAACTTCTCC 59.732 52.381 0.00 0.00 0.00 3.71
1023 1046 1.586154 GGGTTGATGTTCGGTGGCTG 61.586 60.000 0.00 0.00 0.00 4.85
1031 1055 3.053291 TGCGCGGGGTTGATGTTC 61.053 61.111 8.83 0.00 0.00 3.18
1058 1086 0.798776 GGCTATGTCTGTGTGTGCAC 59.201 55.000 10.75 10.75 45.44 4.57
1059 1087 0.396060 TGGCTATGTCTGTGTGTGCA 59.604 50.000 0.00 0.00 0.00 4.57
1149 1189 4.770362 TCCGGCGGGGAGATCACA 62.770 66.667 27.98 0.00 40.94 3.58
1216 1271 2.103042 GGTAGAGCCGCAAGTGCAG 61.103 63.158 3.87 0.00 42.21 4.41
1332 1387 2.906897 CAGGTGGTGCCGCACTTT 60.907 61.111 22.41 3.93 43.70 2.66
1500 1556 4.057943 AGGACCCTAGGCGACGGT 62.058 66.667 2.05 0.00 0.00 4.83
1714 1921 2.749441 GAGTTGCTGCTGCCTCCC 60.749 66.667 13.47 0.00 38.71 4.30
1722 1929 1.377536 GGAGAAGGATGAGTTGCTGC 58.622 55.000 0.00 0.00 0.00 5.25
2013 2220 0.250338 GAACGTCCCACTGCTTCCTT 60.250 55.000 0.00 0.00 0.00 3.36
2176 2386 2.141517 CTTGCCAAGTGAGAGTGTGAG 58.858 52.381 0.00 0.00 0.00 3.51
2177 2387 1.762370 TCTTGCCAAGTGAGAGTGTGA 59.238 47.619 4.04 0.00 0.00 3.58
2178 2388 1.869767 GTCTTGCCAAGTGAGAGTGTG 59.130 52.381 4.04 0.00 0.00 3.82
2179 2389 1.202698 GGTCTTGCCAAGTGAGAGTGT 60.203 52.381 4.04 0.00 37.17 3.55
2180 2390 1.517242 GGTCTTGCCAAGTGAGAGTG 58.483 55.000 4.04 0.00 37.17 3.51
2181 2391 0.034059 CGGTCTTGCCAAGTGAGAGT 59.966 55.000 4.04 0.00 36.97 3.24
2182 2392 1.294659 GCGGTCTTGCCAAGTGAGAG 61.295 60.000 4.04 0.00 36.97 3.20
2183 2393 1.301716 GCGGTCTTGCCAAGTGAGA 60.302 57.895 4.04 0.00 36.97 3.27
2224 2434 1.181098 ATGAGCACACACCAAAGCCC 61.181 55.000 0.00 0.00 0.00 5.19
2228 2438 0.943673 CACGATGAGCACACACCAAA 59.056 50.000 0.00 0.00 0.00 3.28
2232 2442 1.330521 ACAAACACGATGAGCACACAC 59.669 47.619 0.00 0.00 0.00 3.82
2235 2445 3.000041 GGATACAAACACGATGAGCACA 59.000 45.455 0.00 0.00 0.00 4.57
2292 2502 7.587757 CGAAATACTTTTCTTTGTCTGACCAAG 59.412 37.037 13.78 13.78 39.30 3.61
2295 2505 6.851330 CACGAAATACTTTTCTTTGTCTGACC 59.149 38.462 5.17 0.00 39.30 4.02
2302 2512 9.083080 AGGTTTTTCACGAAATACTTTTCTTTG 57.917 29.630 11.27 0.00 39.30 2.77
2317 2527 2.482721 AGCGGTATGAAGGTTTTTCACG 59.517 45.455 0.00 0.00 0.00 4.35
2321 2531 5.557866 AGAACTAGCGGTATGAAGGTTTTT 58.442 37.500 0.00 0.00 0.00 1.94
2330 2540 4.261656 CCCTCAAGTAGAACTAGCGGTATG 60.262 50.000 0.00 0.00 0.00 2.39
2335 2545 4.451629 TTTCCCTCAAGTAGAACTAGCG 57.548 45.455 0.00 0.00 0.00 4.26
2339 2549 4.263112 GGAGCTTTTCCCTCAAGTAGAACT 60.263 45.833 0.00 0.00 40.37 3.01
2365 2577 1.821216 AAGGAACCAACGCATTCGAT 58.179 45.000 0.00 0.00 39.41 3.59
2366 2578 1.600023 AAAGGAACCAACGCATTCGA 58.400 45.000 0.00 0.00 39.41 3.71
2367 2579 2.050691 CAAAAGGAACCAACGCATTCG 58.949 47.619 0.00 0.00 42.43 3.34
2369 2581 3.069443 ACATCAAAAGGAACCAACGCATT 59.931 39.130 0.00 0.00 0.00 3.56
2370 2582 2.627699 ACATCAAAAGGAACCAACGCAT 59.372 40.909 0.00 0.00 0.00 4.73
2372 2584 2.793278 ACATCAAAAGGAACCAACGC 57.207 45.000 0.00 0.00 0.00 4.84
2373 2585 5.348164 AGAAAACATCAAAAGGAACCAACG 58.652 37.500 0.00 0.00 0.00 4.10
2374 2586 6.573434 AGAGAAAACATCAAAAGGAACCAAC 58.427 36.000 0.00 0.00 0.00 3.77
2375 2587 6.790232 AGAGAAAACATCAAAAGGAACCAA 57.210 33.333 0.00 0.00 0.00 3.67
2376 2588 6.790232 AAGAGAAAACATCAAAAGGAACCA 57.210 33.333 0.00 0.00 0.00 3.67
2377 2589 9.764363 AAATAAGAGAAAACATCAAAAGGAACC 57.236 29.630 0.00 0.00 0.00 3.62
2414 2626 1.002888 AGCACCAGGTCTCATCAACTG 59.997 52.381 0.00 0.00 0.00 3.16
2439 2651 0.888619 AACCTCGCATCAGACGAAGA 59.111 50.000 0.00 0.00 39.39 2.87
2448 2660 4.778143 ACGGCCCAACCTCGCATC 62.778 66.667 0.00 0.00 35.61 3.91
2457 2669 2.009208 AAACTACCCCAACGGCCCAA 62.009 55.000 0.00 0.00 33.26 4.12
2458 2670 2.414658 GAAACTACCCCAACGGCCCA 62.415 60.000 0.00 0.00 33.26 5.36
2459 2671 1.676635 GAAACTACCCCAACGGCCC 60.677 63.158 0.00 0.00 33.26 5.80
2460 2672 0.614812 TAGAAACTACCCCAACGGCC 59.385 55.000 0.00 0.00 33.26 6.13
2461 2673 2.704464 ATAGAAACTACCCCAACGGC 57.296 50.000 0.00 0.00 33.26 5.68
2462 2674 5.005094 TGAAAATAGAAACTACCCCAACGG 58.995 41.667 0.00 0.00 37.81 4.44
2463 2675 5.704053 ACTGAAAATAGAAACTACCCCAACG 59.296 40.000 0.00 0.00 0.00 4.10
2464 2676 6.489022 ACACTGAAAATAGAAACTACCCCAAC 59.511 38.462 0.00 0.00 0.00 3.77
2465 2677 6.607019 ACACTGAAAATAGAAACTACCCCAA 58.393 36.000 0.00 0.00 0.00 4.12
2506 3986 4.859798 GGCGATCATTACATGACTACTAGC 59.140 45.833 0.00 0.00 43.01 3.42
2521 4616 1.745115 CAACACACCGGGCGATCAT 60.745 57.895 6.32 0.00 0.00 2.45
2526 4621 0.672401 AAGTATCAACACACCGGGCG 60.672 55.000 6.32 0.00 0.00 6.13
2527 4622 0.802494 CAAGTATCAACACACCGGGC 59.198 55.000 6.32 0.00 0.00 6.13
2528 4623 2.178912 ACAAGTATCAACACACCGGG 57.821 50.000 6.32 0.00 0.00 5.73
2530 4625 5.107220 GGAAACTACAAGTATCAACACACCG 60.107 44.000 0.00 0.00 0.00 4.94
2531 4626 5.995897 AGGAAACTACAAGTATCAACACACC 59.004 40.000 0.00 0.00 40.61 4.16
2543 4638 9.268268 TCACAAACATACTTAGGAAACTACAAG 57.732 33.333 0.00 0.00 44.30 3.16
2544 4639 9.616156 TTCACAAACATACTTAGGAAACTACAA 57.384 29.630 0.00 0.00 44.30 2.41
2549 4644 8.573035 TCCAATTCACAAACATACTTAGGAAAC 58.427 33.333 0.00 0.00 0.00 2.78
2550 4645 8.698973 TCCAATTCACAAACATACTTAGGAAA 57.301 30.769 0.00 0.00 0.00 3.13
2551 4646 8.739039 CATCCAATTCACAAACATACTTAGGAA 58.261 33.333 0.00 0.00 0.00 3.36
2552 4647 8.106462 TCATCCAATTCACAAACATACTTAGGA 58.894 33.333 0.00 0.00 0.00 2.94
2553 4648 8.279970 TCATCCAATTCACAAACATACTTAGG 57.720 34.615 0.00 0.00 0.00 2.69
2556 4651 9.643693 GAAATCATCCAATTCACAAACATACTT 57.356 29.630 0.00 0.00 0.00 2.24
2557 4652 8.805175 TGAAATCATCCAATTCACAAACATACT 58.195 29.630 0.00 0.00 0.00 2.12
2558 4653 8.984891 TGAAATCATCCAATTCACAAACATAC 57.015 30.769 0.00 0.00 0.00 2.39
2561 4656 9.993454 TTAATGAAATCATCCAATTCACAAACA 57.007 25.926 0.00 0.00 36.03 2.83
2600 4695 2.752903 GGTCAACGCCCACTTGATTATT 59.247 45.455 0.00 0.00 30.46 1.40
2603 4698 2.641197 GGTCAACGCCCACTTGATT 58.359 52.632 0.00 0.00 30.46 2.57
2614 4709 1.608590 AGAAACAATGCAGGGTCAACG 59.391 47.619 0.00 0.00 0.00 4.10
2617 4712 1.202758 ACGAGAAACAATGCAGGGTCA 60.203 47.619 0.00 0.00 0.00 4.02
2624 4719 5.107104 TGTTCTATGACACGAGAAACAATGC 60.107 40.000 3.73 0.00 33.59 3.56
2632 4727 5.237561 GCTAGAGATGTTCTATGACACGAGA 59.762 44.000 0.00 0.00 37.75 4.04
2701 4798 1.545841 AGTTTTTCCGCTCAATCCCC 58.454 50.000 0.00 0.00 0.00 4.81
2710 4807 2.225727 CAGGTCAGGTAAGTTTTTCCGC 59.774 50.000 0.00 0.00 0.00 5.54
2713 4810 4.700692 GGGATCAGGTCAGGTAAGTTTTTC 59.299 45.833 0.00 0.00 0.00 2.29
2723 4821 2.484417 CGATTTGAGGGATCAGGTCAGG 60.484 54.545 0.00 0.00 0.00 3.86
2725 4823 1.486310 CCGATTTGAGGGATCAGGTCA 59.514 52.381 0.00 0.00 0.00 4.02
2736 4834 2.125147 TCAGCCGGCCGATTTGAG 60.125 61.111 30.73 10.02 0.00 3.02
2745 4843 2.095978 ATATGTACGGGTCAGCCGGC 62.096 60.000 21.89 21.89 38.51 6.13
2746 4844 0.391597 AATATGTACGGGTCAGCCGG 59.608 55.000 21.57 0.00 40.51 6.13
2750 4848 5.424757 TCCTCAAAAATATGTACGGGTCAG 58.575 41.667 0.00 0.00 0.00 3.51
2756 4854 7.153217 AGGGTTTTCCTCAAAAATATGTACG 57.847 36.000 0.00 0.00 44.06 3.67
2767 4865 3.320826 GCTTGCTTTAGGGTTTTCCTCAA 59.679 43.478 0.00 0.00 44.06 3.02
2773 4871 2.248248 GGAGGCTTGCTTTAGGGTTTT 58.752 47.619 0.00 0.00 0.00 2.43
2817 4915 2.630580 TGGTGAACTGTAAATTTGCCCC 59.369 45.455 0.00 0.00 0.00 5.80
2818 4916 4.329462 TTGGTGAACTGTAAATTTGCCC 57.671 40.909 0.00 0.00 0.00 5.36
2846 4945 2.064242 AACTTCCCTCCCACCAACCG 62.064 60.000 0.00 0.00 0.00 4.44
2853 4952 1.584724 GATCTGGAACTTCCCTCCCA 58.415 55.000 5.30 0.00 35.03 4.37
2854 4953 0.840617 GGATCTGGAACTTCCCTCCC 59.159 60.000 5.30 0.00 35.03 4.30
2866 4965 2.431954 ATTCTGGCAGTTGGATCTGG 57.568 50.000 15.27 0.00 36.12 3.86
2877 4976 3.958147 TCGGAACATAGACTATTCTGGCA 59.042 43.478 5.28 0.00 32.75 4.92
2890 4989 3.243737 CGATGGATCTTGGTCGGAACATA 60.244 47.826 0.00 0.00 0.00 2.29
2891 4990 2.483714 CGATGGATCTTGGTCGGAACAT 60.484 50.000 0.00 0.00 0.00 2.71
2892 4991 1.134818 CGATGGATCTTGGTCGGAACA 60.135 52.381 0.00 0.00 0.00 3.18
2895 4994 0.459899 CACGATGGATCTTGGTCGGA 59.540 55.000 11.86 0.00 38.33 4.55
2912 5011 0.802607 GCCGGAATCGAGACAGACAC 60.803 60.000 5.05 0.00 39.00 3.67
2914 5013 1.227002 GGCCGGAATCGAGACAGAC 60.227 63.158 5.05 0.00 39.00 3.51
2916 5015 0.391130 TTTGGCCGGAATCGAGACAG 60.391 55.000 5.05 0.00 39.00 3.51
2917 5016 0.251916 ATTTGGCCGGAATCGAGACA 59.748 50.000 5.05 0.00 39.00 3.41
2931 5030 1.216178 CTGCCCAGCGGAAATTTGG 59.784 57.895 0.00 0.00 37.02 3.28
2946 5045 1.446618 CGCTTTGAATTGGGCCTGC 60.447 57.895 4.53 0.00 0.00 4.85
2952 5051 6.182039 TCAACTAGAATCGCTTTGAATTGG 57.818 37.500 0.00 0.00 0.00 3.16
2959 5058 6.283694 TGCTGATATCAACTAGAATCGCTTT 58.716 36.000 6.90 0.00 0.00 3.51
2963 5062 4.624882 GCCTGCTGATATCAACTAGAATCG 59.375 45.833 6.90 0.00 0.00 3.34
2964 5063 4.934602 GGCCTGCTGATATCAACTAGAATC 59.065 45.833 6.90 0.00 0.00 2.52
3001 5100 1.776667 TCCCTCCCAAGGAATAGCATG 59.223 52.381 0.00 0.00 46.67 4.06
3002 5101 1.777272 GTCCCTCCCAAGGAATAGCAT 59.223 52.381 0.00 0.00 46.67 3.79
3003 5102 1.213296 GTCCCTCCCAAGGAATAGCA 58.787 55.000 0.00 0.00 46.67 3.49
3005 5104 1.141858 GCTGTCCCTCCCAAGGAATAG 59.858 57.143 0.00 0.00 46.67 1.73
3007 5106 1.915078 CGCTGTCCCTCCCAAGGAAT 61.915 60.000 0.00 0.00 46.67 3.01
3008 5107 2.592993 CGCTGTCCCTCCCAAGGAA 61.593 63.158 0.00 0.00 46.67 3.36
3043 5142 2.604174 CCAGTCCACGAACAACCGC 61.604 63.158 0.00 0.00 0.00 5.68
3044 5143 0.944311 CTCCAGTCCACGAACAACCG 60.944 60.000 0.00 0.00 0.00 4.44
3047 5146 1.342174 GTACCTCCAGTCCACGAACAA 59.658 52.381 0.00 0.00 0.00 2.83
3048 5147 0.963962 GTACCTCCAGTCCACGAACA 59.036 55.000 0.00 0.00 0.00 3.18
3052 5152 0.100682 CGATGTACCTCCAGTCCACG 59.899 60.000 0.00 0.00 0.00 4.94
3059 5159 1.754803 GATGACACCGATGTACCTCCA 59.245 52.381 0.00 0.00 39.95 3.86
3068 5168 1.030488 ACCTCGTCGATGACACCGAT 61.030 55.000 2.39 0.00 38.38 4.18
3117 5217 0.829990 TGCGGTGGAGCATCAATAGA 59.170 50.000 0.00 0.00 42.92 1.98
3118 5218 3.384816 TGCGGTGGAGCATCAATAG 57.615 52.632 0.00 0.00 42.92 1.73
3140 5240 3.775654 CACCTCACCCTCTCCCGC 61.776 72.222 0.00 0.00 0.00 6.13
3147 5247 1.845627 CTCACATGCCACCTCACCCT 61.846 60.000 0.00 0.00 0.00 4.34
3151 5251 1.210234 CATACCTCACATGCCACCTCA 59.790 52.381 0.00 0.00 0.00 3.86
3156 5256 0.179076 CGCTCATACCTCACATGCCA 60.179 55.000 0.00 0.00 0.00 4.92
3169 5269 2.125512 GAACCAGGCGTCGCTCAT 60.126 61.111 18.11 0.40 0.00 2.90
3172 5272 4.719369 GACGAACCAGGCGTCGCT 62.719 66.667 18.11 0.00 46.85 4.93
3178 5279 1.082117 CCATACACGACGAACCAGGC 61.082 60.000 0.00 0.00 0.00 4.85
3187 5288 1.226888 GTCCGCCTCCATACACGAC 60.227 63.158 0.00 0.00 0.00 4.34
3190 5291 2.106332 CGGTCCGCCTCCATACAC 59.894 66.667 0.00 0.00 0.00 2.90
3212 5313 1.439353 CCTCTGCACACCACACACAC 61.439 60.000 0.00 0.00 0.00 3.82
3227 5328 1.292242 TCTCCCTGTATCCTTGCCTCT 59.708 52.381 0.00 0.00 0.00 3.69
3229 5330 1.273838 TGTCTCCCTGTATCCTTGCCT 60.274 52.381 0.00 0.00 0.00 4.75
3239 5340 0.117140 TCTCACCCATGTCTCCCTGT 59.883 55.000 0.00 0.00 0.00 4.00
3243 5344 1.484240 CTTCCTCTCACCCATGTCTCC 59.516 57.143 0.00 0.00 0.00 3.71
3249 5350 3.796111 TCTTCTTCTTCCTCTCACCCAT 58.204 45.455 0.00 0.00 0.00 4.00
3251 5352 3.835395 TCTTCTTCTTCTTCCTCTCACCC 59.165 47.826 0.00 0.00 0.00 4.61
3253 5354 4.282195 TGGTCTTCTTCTTCTTCCTCTCAC 59.718 45.833 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.