Multiple sequence alignment - TraesCS4B01G315600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G315600 chr4B 100.000 4235 0 0 989 5223 605172604 605168370 0.000000e+00 7821.0
1 TraesCS4B01G315600 chr4B 100.000 873 0 0 1 873 605173592 605172720 0.000000e+00 1613.0
2 TraesCS4B01G315600 chr4B 78.626 393 58 13 2015 2394 605171449 605171070 2.430000e-58 237.0
3 TraesCS4B01G315600 chr4B 78.626 393 58 13 2144 2523 605171578 605171199 2.430000e-58 237.0
4 TraesCS4B01G315600 chr4B 79.699 133 27 0 2144 2276 605170942 605170810 4.310000e-16 97.1
5 TraesCS4B01G315600 chr4B 79.699 133 27 0 2651 2783 605171449 605171317 4.310000e-16 97.1
6 TraesCS4B01G315600 chr4B 90.196 51 5 0 424 474 82606901 82606951 3.380000e-07 67.6
7 TraesCS4B01G315600 chr4A 94.687 3670 149 21 996 4642 685000825 684997179 0.000000e+00 5655.0
8 TraesCS4B01G315600 chr4A 80.764 733 116 20 4403 5122 621250439 621249719 2.750000e-152 549.0
9 TraesCS4B01G315600 chr4A 87.366 467 45 9 3869 4332 96741281 96741736 1.670000e-144 523.0
10 TraesCS4B01G315600 chr4A 87.966 349 25 6 518 852 685001624 685001279 3.790000e-106 396.0
11 TraesCS4B01G315600 chr4A 78.827 392 59 11 2144 2523 684999809 684999430 5.230000e-60 243.0
12 TraesCS4B01G315600 chr4A 89.333 75 8 0 2144 2218 684999173 684999099 1.550000e-15 95.3
13 TraesCS4B01G315600 chr4A 77.444 133 28 2 2652 2783 684999679 684999548 1.560000e-10 78.7
14 TraesCS4B01G315600 chr4D 97.263 2302 54 2 2144 4439 478514667 478512369 0.000000e+00 3893.0
15 TraesCS4B01G315600 chr4D 90.102 1374 99 19 1038 2394 478515641 478514288 0.000000e+00 1749.0
16 TraesCS4B01G315600 chr4D 96.168 809 21 9 4421 5223 478512183 478511379 0.000000e+00 1314.0
17 TraesCS4B01G315600 chr4D 93.315 359 12 3 423 770 478516645 478516288 2.160000e-143 520.0
18 TraesCS4B01G315600 chr4D 78.680 197 40 2 2587 2782 478514731 478514536 4.240000e-26 130.0
19 TraesCS4B01G315600 chr2A 90.043 462 37 8 3871 4332 313300215 313300667 1.620000e-164 590.0
20 TraesCS4B01G315600 chr2A 81.863 204 26 10 4935 5133 398458485 398458288 1.510000e-35 161.0
21 TraesCS4B01G315600 chr2A 81.863 204 26 10 4935 5133 398857088 398857285 1.510000e-35 161.0
22 TraesCS4B01G315600 chr2A 95.294 85 4 0 340 424 111412175 111412091 9.120000e-28 135.0
23 TraesCS4B01G315600 chr2A 92.553 94 4 2 5132 5223 313300667 313300759 1.180000e-26 132.0
24 TraesCS4B01G315600 chr2A 84.375 128 18 2 3688 3815 303731709 303731584 1.970000e-24 124.0
25 TraesCS4B01G315600 chr6A 89.871 464 37 4 3869 4332 391865101 391864648 5.830000e-164 588.0
26 TraesCS4B01G315600 chr6A 89.130 92 8 1 5132 5221 391864648 391864557 4.270000e-21 113.0
27 TraesCS4B01G315600 chr5A 89.655 464 37 9 3869 4332 555179526 555179074 9.750000e-162 580.0
28 TraesCS4B01G315600 chr1D 89.610 462 40 7 3871 4332 168956311 168956764 9.750000e-162 580.0
29 TraesCS4B01G315600 chr1D 93.617 94 4 1 5132 5223 168956764 168956857 7.050000e-29 139.0
30 TraesCS4B01G315600 chr1D 94.382 89 4 1 340 427 135048119 135048031 9.120000e-28 135.0
31 TraesCS4B01G315600 chr2D 81.127 710 109 25 4405 5105 106967475 106968168 3.560000e-151 545.0
32 TraesCS4B01G315600 chr2D 94.624 93 4 1 340 432 81771357 81771266 5.450000e-30 143.0
33 TraesCS4B01G315600 chr2D 93.478 92 5 1 337 427 513253122 513253213 9.120000e-28 135.0
34 TraesCS4B01G315600 chr2D 85.385 130 17 2 3688 3817 262449410 262449283 3.280000e-27 134.0
35 TraesCS4B01G315600 chr7D 81.633 686 98 24 4328 4998 104583030 104583702 1.280000e-150 544.0
36 TraesCS4B01G315600 chr7D 94.382 89 5 0 339 427 45680502 45680414 2.540000e-28 137.0
37 TraesCS4B01G315600 chr7D 94.253 87 5 0 340 426 509611651 509611737 3.280000e-27 134.0
38 TraesCS4B01G315600 chr5D 79.130 805 139 26 4329 5119 447190247 447191036 3.580000e-146 529.0
39 TraesCS4B01G315600 chr5D 79.156 806 136 26 4329 5120 514964193 514963406 3.580000e-146 529.0
40 TraesCS4B01G315600 chr5D 79.294 821 118 37 4331 5126 45510795 45510002 1.290000e-145 527.0
41 TraesCS4B01G315600 chr5D 93.478 92 5 1 337 427 347656115 347656206 9.120000e-28 135.0
42 TraesCS4B01G315600 chr6D 79.371 795 116 32 4328 5101 469521976 469522743 2.790000e-142 516.0
43 TraesCS4B01G315600 chr7A 79.156 782 128 22 4331 5099 24862520 24861761 4.670000e-140 508.0
44 TraesCS4B01G315600 chr7A 93.478 46 3 0 429 474 520508077 520508122 9.390000e-08 69.4
45 TraesCS4B01G315600 chr3B 84.768 453 43 9 3881 4332 570210734 570210307 1.040000e-116 431.0
46 TraesCS4B01G315600 chr2B 86.719 128 15 2 3688 3815 286986586 286986711 1.960000e-29 141.0
47 TraesCS4B01G315600 chrUn 93.478 92 5 1 337 427 67634372 67634463 9.120000e-28 135.0
48 TraesCS4B01G315600 chr3D 93.478 92 5 1 340 431 112210175 112210085 9.120000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G315600 chr4B 605168370 605173592 5222 True 1683.7 7821 86.108333 1 5223 6 chr4B.!!$R1 5222
1 TraesCS4B01G315600 chr4A 684997179 685001624 4445 True 1293.6 5655 85.651400 518 4642 5 chr4A.!!$R2 4124
2 TraesCS4B01G315600 chr4A 621249719 621250439 720 True 549.0 549 80.764000 4403 5122 1 chr4A.!!$R1 719
3 TraesCS4B01G315600 chr4D 478511379 478516645 5266 True 1521.2 3893 91.105600 423 5223 5 chr4D.!!$R1 4800
4 TraesCS4B01G315600 chr2A 313300215 313300759 544 False 361.0 590 91.298000 3871 5223 2 chr2A.!!$F2 1352
5 TraesCS4B01G315600 chr6A 391864557 391865101 544 True 350.5 588 89.500500 3869 5221 2 chr6A.!!$R1 1352
6 TraesCS4B01G315600 chr1D 168956311 168956857 546 False 359.5 580 91.613500 3871 5223 2 chr1D.!!$F1 1352
7 TraesCS4B01G315600 chr2D 106967475 106968168 693 False 545.0 545 81.127000 4405 5105 1 chr2D.!!$F1 700
8 TraesCS4B01G315600 chr7D 104583030 104583702 672 False 544.0 544 81.633000 4328 4998 1 chr7D.!!$F1 670
9 TraesCS4B01G315600 chr5D 447190247 447191036 789 False 529.0 529 79.130000 4329 5119 1 chr5D.!!$F2 790
10 TraesCS4B01G315600 chr5D 514963406 514964193 787 True 529.0 529 79.156000 4329 5120 1 chr5D.!!$R2 791
11 TraesCS4B01G315600 chr5D 45510002 45510795 793 True 527.0 527 79.294000 4331 5126 1 chr5D.!!$R1 795
12 TraesCS4B01G315600 chr6D 469521976 469522743 767 False 516.0 516 79.371000 4328 5101 1 chr6D.!!$F1 773
13 TraesCS4B01G315600 chr7A 24861761 24862520 759 True 508.0 508 79.156000 4331 5099 1 chr7A.!!$R1 768

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
203 204 0.028505 TTACGTGTCGCGAGCCTATC 59.971 55.0 10.24 0.0 44.77 2.08 F
1813 2227 0.035630 CTGGGGGAGCTTCTCTTGTG 60.036 60.0 0.00 0.0 0.00 3.33 F
2071 2485 0.034477 CAGGAATTACAACCGGGGCT 60.034 55.0 6.32 0.0 0.00 5.19 F
2103 2517 0.036732 AAAGGCGTTGCAGATCCAGA 59.963 50.0 0.00 0.0 0.00 3.86 F
2686 3229 0.108662 CAGCAGATGTAGTCACCGCA 60.109 55.0 0.00 0.0 0.00 5.69 F
3466 4015 0.987715 CTTGTGAGAGTGCGATGTCG 59.012 55.0 0.00 0.0 43.27 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2052 2466 0.034477 AGCCCCGGTTGTAATTCCTG 60.034 55.000 0.00 0.00 0.00 3.86 R
3466 4015 0.390340 TGTCTGCAGATTCAGCGGTC 60.390 55.000 21.47 3.84 39.38 4.79 R
3730 4279 1.686115 GCCATACTGCAACCTTCCCAT 60.686 52.381 0.00 0.00 0.00 4.00 R
3887 4436 1.740025 AGCAAGATTTTACCTCTGCGC 59.260 47.619 0.00 0.00 0.00 6.09 R
3988 4537 3.565482 TGTCAGAACTCAGAACAATTGGC 59.435 43.478 10.83 1.25 0.00 4.52 R
5167 5967 3.557577 TGATTGAACAACTTCATGGCG 57.442 42.857 0.00 0.00 36.26 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 4.521062 GCAGCTCCTGTCGGCGAT 62.521 66.667 14.79 0.00 33.43 4.58
43 44 2.584418 CAGCTCCTGTCGGCGATG 60.584 66.667 14.79 9.46 0.00 3.84
44 45 3.842923 AGCTCCTGTCGGCGATGG 61.843 66.667 14.79 18.62 0.00 3.51
45 46 4.899239 GCTCCTGTCGGCGATGGG 62.899 72.222 24.41 22.28 0.00 4.00
46 47 4.227134 CTCCTGTCGGCGATGGGG 62.227 72.222 24.41 20.24 0.00 4.96
49 50 4.227134 CTGTCGGCGATGGGGGAG 62.227 72.222 14.79 0.00 0.00 4.30
50 51 4.770362 TGTCGGCGATGGGGGAGA 62.770 66.667 14.79 0.00 0.00 3.71
51 52 3.917760 GTCGGCGATGGGGGAGAG 61.918 72.222 14.79 0.00 0.00 3.20
52 53 4.137615 TCGGCGATGGGGGAGAGA 62.138 66.667 4.99 0.00 0.00 3.10
53 54 3.610669 CGGCGATGGGGGAGAGAG 61.611 72.222 0.00 0.00 0.00 3.20
54 55 3.237741 GGCGATGGGGGAGAGAGG 61.238 72.222 0.00 0.00 0.00 3.69
55 56 3.237741 GCGATGGGGGAGAGAGGG 61.238 72.222 0.00 0.00 0.00 4.30
56 57 2.609339 CGATGGGGGAGAGAGGGA 59.391 66.667 0.00 0.00 0.00 4.20
57 58 1.532794 CGATGGGGGAGAGAGGGAG 60.533 68.421 0.00 0.00 0.00 4.30
58 59 1.942271 GATGGGGGAGAGAGGGAGA 59.058 63.158 0.00 0.00 0.00 3.71
59 60 0.178935 GATGGGGGAGAGAGGGAGAG 60.179 65.000 0.00 0.00 0.00 3.20
60 61 1.673928 ATGGGGGAGAGAGGGAGAGG 61.674 65.000 0.00 0.00 0.00 3.69
61 62 2.123033 GGGGAGAGAGGGAGAGGC 60.123 72.222 0.00 0.00 0.00 4.70
62 63 2.520741 GGGAGAGAGGGAGAGGCG 60.521 72.222 0.00 0.00 0.00 5.52
63 64 2.520741 GGAGAGAGGGAGAGGCGG 60.521 72.222 0.00 0.00 0.00 6.13
64 65 3.223589 GAGAGAGGGAGAGGCGGC 61.224 72.222 0.00 0.00 0.00 6.53
83 84 4.910585 CGGCCACCTATGTCGCCC 62.911 72.222 2.24 0.00 38.19 6.13
84 85 4.910585 GGCCACCTATGTCGCCCG 62.911 72.222 0.00 0.00 35.23 6.13
118 119 2.286962 GGGGGAGGGGCTAAGGTT 60.287 66.667 0.00 0.00 0.00 3.50
119 120 2.690734 GGGGGAGGGGCTAAGGTTG 61.691 68.421 0.00 0.00 0.00 3.77
120 121 2.275748 GGGAGGGGCTAAGGTTGC 59.724 66.667 0.00 0.00 0.00 4.17
129 130 1.897560 GCTAAGGTTGCCAGACTTGT 58.102 50.000 0.00 0.00 0.00 3.16
130 131 1.807142 GCTAAGGTTGCCAGACTTGTC 59.193 52.381 0.00 0.00 0.00 3.18
131 132 2.551071 GCTAAGGTTGCCAGACTTGTCT 60.551 50.000 0.00 0.00 0.00 3.41
132 133 2.262423 AAGGTTGCCAGACTTGTCTC 57.738 50.000 0.00 0.00 0.00 3.36
133 134 0.398318 AGGTTGCCAGACTTGTCTCC 59.602 55.000 0.00 0.00 0.00 3.71
134 135 0.606673 GGTTGCCAGACTTGTCTCCC 60.607 60.000 0.00 0.00 0.00 4.30
135 136 0.951040 GTTGCCAGACTTGTCTCCCG 60.951 60.000 0.00 0.00 0.00 5.14
136 137 2.435059 GCCAGACTTGTCTCCCGC 60.435 66.667 0.00 0.04 0.00 6.13
137 138 2.125912 CCAGACTTGTCTCCCGCG 60.126 66.667 0.00 0.00 0.00 6.46
138 139 2.811317 CAGACTTGTCTCCCGCGC 60.811 66.667 0.00 0.00 0.00 6.86
139 140 2.992114 AGACTTGTCTCCCGCGCT 60.992 61.111 5.56 0.00 0.00 5.92
140 141 1.677966 AGACTTGTCTCCCGCGCTA 60.678 57.895 5.56 0.00 0.00 4.26
141 142 1.516603 GACTTGTCTCCCGCGCTAC 60.517 63.158 5.56 0.00 0.00 3.58
142 143 2.209064 GACTTGTCTCCCGCGCTACA 62.209 60.000 5.56 0.00 0.00 2.74
143 144 1.080093 CTTGTCTCCCGCGCTACAA 60.080 57.895 5.56 7.09 0.00 2.41
144 145 0.669318 CTTGTCTCCCGCGCTACAAA 60.669 55.000 5.56 0.00 31.90 2.83
145 146 0.036765 TTGTCTCCCGCGCTACAAAT 60.037 50.000 5.56 0.00 0.00 2.32
146 147 0.036765 TGTCTCCCGCGCTACAAATT 60.037 50.000 5.56 0.00 0.00 1.82
147 148 1.084289 GTCTCCCGCGCTACAAATTT 58.916 50.000 5.56 0.00 0.00 1.82
148 149 1.467342 GTCTCCCGCGCTACAAATTTT 59.533 47.619 5.56 0.00 0.00 1.82
149 150 2.095415 GTCTCCCGCGCTACAAATTTTT 60.095 45.455 5.56 0.00 0.00 1.94
150 151 3.125658 GTCTCCCGCGCTACAAATTTTTA 59.874 43.478 5.56 0.00 0.00 1.52
151 152 3.752222 TCTCCCGCGCTACAAATTTTTAA 59.248 39.130 5.56 0.00 0.00 1.52
152 153 4.215827 TCTCCCGCGCTACAAATTTTTAAA 59.784 37.500 5.56 0.00 0.00 1.52
153 154 4.228317 TCCCGCGCTACAAATTTTTAAAC 58.772 39.130 5.56 0.00 0.00 2.01
154 155 3.982058 CCCGCGCTACAAATTTTTAAACA 59.018 39.130 5.56 0.00 0.00 2.83
155 156 4.623595 CCCGCGCTACAAATTTTTAAACAT 59.376 37.500 5.56 0.00 0.00 2.71
156 157 5.443955 CCCGCGCTACAAATTTTTAAACATG 60.444 40.000 5.56 0.00 0.00 3.21
157 158 5.443955 CCGCGCTACAAATTTTTAAACATGG 60.444 40.000 5.56 0.00 0.00 3.66
158 159 5.312838 GCGCTACAAATTTTTAAACATGGC 58.687 37.500 0.00 0.00 0.00 4.40
159 160 5.107298 GCGCTACAAATTTTTAAACATGGCA 60.107 36.000 0.00 0.00 0.00 4.92
160 161 6.564873 GCGCTACAAATTTTTAAACATGGCAA 60.565 34.615 0.00 0.00 0.00 4.52
161 162 7.348201 CGCTACAAATTTTTAAACATGGCAAA 58.652 30.769 0.00 0.00 0.00 3.68
162 163 7.852945 CGCTACAAATTTTTAAACATGGCAAAA 59.147 29.630 0.00 0.00 0.00 2.44
163 164 9.676195 GCTACAAATTTTTAAACATGGCAAAAT 57.324 25.926 0.00 0.00 31.57 1.82
165 166 8.779603 ACAAATTTTTAAACATGGCAAAATCG 57.220 26.923 0.00 1.15 30.27 3.34
166 167 8.616076 ACAAATTTTTAAACATGGCAAAATCGA 58.384 25.926 0.00 0.00 30.27 3.59
167 168 9.443283 CAAATTTTTAAACATGGCAAAATCGAA 57.557 25.926 0.00 0.00 30.27 3.71
169 170 9.662545 AATTTTTAAACATGGCAAAATCGAAAG 57.337 25.926 0.00 0.00 30.27 2.62
170 171 7.778470 TTTTAAACATGGCAAAATCGAAAGT 57.222 28.000 0.00 0.00 0.00 2.66
171 172 7.778470 TTTAAACATGGCAAAATCGAAAGTT 57.222 28.000 0.00 0.00 0.00 2.66
172 173 5.905480 AAACATGGCAAAATCGAAAGTTC 57.095 34.783 0.00 0.00 0.00 3.01
184 185 3.806316 CGAAAGTTCGTAGTGGCAAAT 57.194 42.857 5.28 0.00 45.09 2.32
185 186 4.141855 CGAAAGTTCGTAGTGGCAAATT 57.858 40.909 5.28 0.00 45.09 1.82
186 187 5.272167 CGAAAGTTCGTAGTGGCAAATTA 57.728 39.130 5.28 0.00 45.09 1.40
187 188 5.077424 CGAAAGTTCGTAGTGGCAAATTAC 58.923 41.667 5.28 0.00 45.09 1.89
188 189 4.657075 AAGTTCGTAGTGGCAAATTACG 57.343 40.909 16.60 16.60 40.96 3.18
189 190 3.656559 AGTTCGTAGTGGCAAATTACGT 58.343 40.909 19.87 0.00 40.58 3.57
190 191 3.430895 AGTTCGTAGTGGCAAATTACGTG 59.569 43.478 19.87 2.34 40.58 4.49
191 192 3.029320 TCGTAGTGGCAAATTACGTGT 57.971 42.857 19.87 0.00 40.58 4.49
192 193 2.988493 TCGTAGTGGCAAATTACGTGTC 59.012 45.455 19.87 0.00 40.58 3.67
193 194 2.222420 CGTAGTGGCAAATTACGTGTCG 60.222 50.000 15.23 0.00 36.38 4.35
194 195 0.515564 AGTGGCAAATTACGTGTCGC 59.484 50.000 0.00 0.00 0.00 5.19
196 197 0.944788 TGGCAAATTACGTGTCGCGA 60.945 50.000 13.68 3.71 44.77 5.87
197 198 0.247145 GGCAAATTACGTGTCGCGAG 60.247 55.000 10.24 0.00 44.77 5.03
198 199 0.852007 GCAAATTACGTGTCGCGAGC 60.852 55.000 10.24 4.53 44.77 5.03
199 200 0.247145 CAAATTACGTGTCGCGAGCC 60.247 55.000 10.24 1.06 44.77 4.70
200 201 0.389426 AAATTACGTGTCGCGAGCCT 60.389 50.000 10.24 0.00 44.77 4.58
201 202 0.452987 AATTACGTGTCGCGAGCCTA 59.547 50.000 10.24 0.00 44.77 3.93
202 203 0.666913 ATTACGTGTCGCGAGCCTAT 59.333 50.000 10.24 0.00 44.77 2.57
203 204 0.028505 TTACGTGTCGCGAGCCTATC 59.971 55.000 10.24 0.00 44.77 2.08
204 205 1.091197 TACGTGTCGCGAGCCTATCA 61.091 55.000 10.24 0.00 44.77 2.15
205 206 1.226575 CGTGTCGCGAGCCTATCAA 60.227 57.895 10.24 0.00 44.77 2.57
206 207 0.595053 CGTGTCGCGAGCCTATCAAT 60.595 55.000 10.24 0.00 44.77 2.57
207 208 1.571919 GTGTCGCGAGCCTATCAATT 58.428 50.000 10.24 0.00 0.00 2.32
208 209 1.523095 GTGTCGCGAGCCTATCAATTC 59.477 52.381 10.24 0.00 0.00 2.17
209 210 1.409064 TGTCGCGAGCCTATCAATTCT 59.591 47.619 10.24 0.00 0.00 2.40
210 211 2.055100 GTCGCGAGCCTATCAATTCTC 58.945 52.381 10.24 0.00 0.00 2.87
211 212 1.957177 TCGCGAGCCTATCAATTCTCT 59.043 47.619 3.71 0.00 0.00 3.10
212 213 2.362397 TCGCGAGCCTATCAATTCTCTT 59.638 45.455 3.71 0.00 0.00 2.85
213 214 2.728839 CGCGAGCCTATCAATTCTCTTC 59.271 50.000 0.00 0.00 0.00 2.87
214 215 3.722147 GCGAGCCTATCAATTCTCTTCA 58.278 45.455 0.00 0.00 0.00 3.02
215 216 3.740321 GCGAGCCTATCAATTCTCTTCAG 59.260 47.826 0.00 0.00 0.00 3.02
216 217 3.740321 CGAGCCTATCAATTCTCTTCAGC 59.260 47.826 0.00 0.00 0.00 4.26
217 218 4.701765 GAGCCTATCAATTCTCTTCAGCA 58.298 43.478 0.00 0.00 0.00 4.41
218 219 5.108187 AGCCTATCAATTCTCTTCAGCAA 57.892 39.130 0.00 0.00 0.00 3.91
219 220 5.124645 AGCCTATCAATTCTCTTCAGCAAG 58.875 41.667 0.00 0.00 0.00 4.01
220 221 4.880696 GCCTATCAATTCTCTTCAGCAAGT 59.119 41.667 0.00 0.00 0.00 3.16
221 222 6.051717 GCCTATCAATTCTCTTCAGCAAGTA 58.948 40.000 0.00 0.00 0.00 2.24
222 223 6.709846 GCCTATCAATTCTCTTCAGCAAGTAT 59.290 38.462 0.00 0.00 0.00 2.12
223 224 7.307870 GCCTATCAATTCTCTTCAGCAAGTATG 60.308 40.741 0.00 0.00 0.00 2.39
224 225 7.930325 CCTATCAATTCTCTTCAGCAAGTATGA 59.070 37.037 0.00 0.00 0.00 2.15
225 226 6.974932 TCAATTCTCTTCAGCAAGTATGAC 57.025 37.500 0.00 0.00 0.00 3.06
226 227 6.466812 TCAATTCTCTTCAGCAAGTATGACA 58.533 36.000 0.00 0.00 0.00 3.58
227 228 6.936335 TCAATTCTCTTCAGCAAGTATGACAA 59.064 34.615 0.00 0.00 0.00 3.18
228 229 7.445096 TCAATTCTCTTCAGCAAGTATGACAAA 59.555 33.333 0.00 0.00 0.00 2.83
229 230 7.934855 ATTCTCTTCAGCAAGTATGACAAAT 57.065 32.000 0.00 0.00 0.00 2.32
230 231 6.974932 TCTCTTCAGCAAGTATGACAAATC 57.025 37.500 0.00 0.00 0.00 2.17
231 232 5.877012 TCTCTTCAGCAAGTATGACAAATCC 59.123 40.000 0.00 0.00 0.00 3.01
232 233 5.809001 TCTTCAGCAAGTATGACAAATCCT 58.191 37.500 0.00 0.00 0.00 3.24
233 234 5.645067 TCTTCAGCAAGTATGACAAATCCTG 59.355 40.000 0.00 0.00 0.00 3.86
234 235 5.164620 TCAGCAAGTATGACAAATCCTGA 57.835 39.130 0.00 0.00 0.00 3.86
235 236 4.937620 TCAGCAAGTATGACAAATCCTGAC 59.062 41.667 0.00 0.00 0.00 3.51
236 237 4.696877 CAGCAAGTATGACAAATCCTGACA 59.303 41.667 0.00 0.00 34.18 3.58
237 238 5.356190 CAGCAAGTATGACAAATCCTGACAT 59.644 40.000 0.00 0.00 42.13 3.06
238 239 6.539826 CAGCAAGTATGACAAATCCTGACATA 59.460 38.462 0.00 0.00 40.31 2.29
239 240 7.228108 CAGCAAGTATGACAAATCCTGACATAT 59.772 37.037 0.00 0.00 42.18 1.78
240 241 7.776969 AGCAAGTATGACAAATCCTGACATATT 59.223 33.333 0.00 0.00 42.18 1.28
241 242 8.072567 GCAAGTATGACAAATCCTGACATATTC 58.927 37.037 0.00 0.00 42.18 1.75
242 243 9.112725 CAAGTATGACAAATCCTGACATATTCA 57.887 33.333 0.00 0.00 42.18 2.57
288 289 2.476126 TTTTGCCAGGATTTGCCATG 57.524 45.000 0.00 0.00 40.02 3.66
289 290 0.036199 TTTGCCAGGATTTGCCATGC 60.036 50.000 0.00 0.00 40.02 4.06
290 291 0.905809 TTGCCAGGATTTGCCATGCT 60.906 50.000 0.00 0.00 40.02 3.79
291 292 1.324740 TGCCAGGATTTGCCATGCTC 61.325 55.000 0.00 0.00 40.02 4.26
292 293 1.324740 GCCAGGATTTGCCATGCTCA 61.325 55.000 0.00 0.00 40.02 4.26
293 294 0.458669 CCAGGATTTGCCATGCTCAC 59.541 55.000 0.00 0.00 40.02 3.51
294 295 0.458669 CAGGATTTGCCATGCTCACC 59.541 55.000 0.00 0.00 40.02 4.02
295 296 1.033746 AGGATTTGCCATGCTCACCG 61.034 55.000 0.00 0.00 40.02 4.94
296 297 1.031571 GGATTTGCCATGCTCACCGA 61.032 55.000 0.00 0.00 36.34 4.69
297 298 0.810648 GATTTGCCATGCTCACCGAA 59.189 50.000 0.00 0.00 0.00 4.30
298 299 1.406539 GATTTGCCATGCTCACCGAAT 59.593 47.619 0.00 0.00 0.00 3.34
299 300 0.527113 TTTGCCATGCTCACCGAATG 59.473 50.000 0.00 0.00 0.00 2.67
300 301 0.322366 TTGCCATGCTCACCGAATGA 60.322 50.000 0.00 0.00 35.45 2.57
301 302 0.322366 TGCCATGCTCACCGAATGAA 60.322 50.000 0.00 0.00 36.69 2.57
302 303 0.810648 GCCATGCTCACCGAATGAAA 59.189 50.000 0.00 0.00 36.69 2.69
303 304 1.406539 GCCATGCTCACCGAATGAAAT 59.593 47.619 0.00 0.00 36.69 2.17
304 305 2.159198 GCCATGCTCACCGAATGAAATT 60.159 45.455 0.00 0.00 40.93 1.82
305 306 3.441163 CCATGCTCACCGAATGAAATTG 58.559 45.455 0.00 0.00 36.07 2.32
306 307 2.634982 TGCTCACCGAATGAAATTGC 57.365 45.000 0.00 0.00 36.07 3.56
307 308 1.202114 TGCTCACCGAATGAAATTGCC 59.798 47.619 0.00 0.00 36.07 4.52
308 309 1.202114 GCTCACCGAATGAAATTGCCA 59.798 47.619 0.00 0.00 36.07 4.92
309 310 2.159198 GCTCACCGAATGAAATTGCCAT 60.159 45.455 0.00 0.00 36.07 4.40
310 311 3.441163 CTCACCGAATGAAATTGCCATG 58.559 45.455 0.00 0.00 36.07 3.66
311 312 1.928503 CACCGAATGAAATTGCCATGC 59.071 47.619 0.00 0.00 36.07 4.06
312 313 1.826720 ACCGAATGAAATTGCCATGCT 59.173 42.857 0.00 0.00 36.07 3.79
313 314 2.159198 ACCGAATGAAATTGCCATGCTC 60.159 45.455 0.00 0.00 36.07 4.26
314 315 2.159212 CCGAATGAAATTGCCATGCTCA 60.159 45.455 0.00 0.00 36.07 4.26
315 316 2.855963 CGAATGAAATTGCCATGCTCAC 59.144 45.455 0.00 0.00 36.07 3.51
316 317 3.673866 CGAATGAAATTGCCATGCTCACA 60.674 43.478 0.00 0.00 36.07 3.58
317 318 3.965379 ATGAAATTGCCATGCTCACAA 57.035 38.095 0.00 0.00 0.00 3.33
318 319 3.029320 TGAAATTGCCATGCTCACAAC 57.971 42.857 0.00 0.00 0.00 3.32
319 320 2.364647 TGAAATTGCCATGCTCACAACA 59.635 40.909 0.00 0.00 0.00 3.33
320 321 3.181468 TGAAATTGCCATGCTCACAACAA 60.181 39.130 0.00 0.00 0.00 2.83
321 322 2.736144 ATTGCCATGCTCACAACAAG 57.264 45.000 0.00 0.00 0.00 3.16
322 323 1.401761 TTGCCATGCTCACAACAAGT 58.598 45.000 0.00 0.00 0.00 3.16
323 324 1.401761 TGCCATGCTCACAACAAGTT 58.598 45.000 0.00 0.00 0.00 2.66
324 325 2.580962 TGCCATGCTCACAACAAGTTA 58.419 42.857 0.00 0.00 0.00 2.24
325 326 3.156293 TGCCATGCTCACAACAAGTTAT 58.844 40.909 0.00 0.00 0.00 1.89
326 327 3.573538 TGCCATGCTCACAACAAGTTATT 59.426 39.130 0.00 0.00 0.00 1.40
327 328 4.039004 TGCCATGCTCACAACAAGTTATTT 59.961 37.500 0.00 0.00 0.00 1.40
328 329 4.386652 GCCATGCTCACAACAAGTTATTTG 59.613 41.667 0.00 0.00 42.68 2.32
329 330 4.386652 CCATGCTCACAACAAGTTATTTGC 59.613 41.667 0.00 0.00 40.59 3.68
330 331 3.976169 TGCTCACAACAAGTTATTTGCC 58.024 40.909 0.00 0.00 40.59 4.52
331 332 3.382865 TGCTCACAACAAGTTATTTGCCA 59.617 39.130 0.00 0.00 40.59 4.92
332 333 4.039004 TGCTCACAACAAGTTATTTGCCAT 59.961 37.500 0.00 0.00 40.59 4.40
333 334 4.386652 GCTCACAACAAGTTATTTGCCATG 59.613 41.667 0.00 0.00 40.59 3.66
334 335 5.771469 CTCACAACAAGTTATTTGCCATGA 58.229 37.500 0.00 0.00 40.59 3.07
335 336 5.771469 TCACAACAAGTTATTTGCCATGAG 58.229 37.500 0.00 0.00 40.59 2.90
336 337 5.534278 TCACAACAAGTTATTTGCCATGAGA 59.466 36.000 0.00 0.00 40.59 3.27
337 338 6.040278 TCACAACAAGTTATTTGCCATGAGAA 59.960 34.615 0.00 0.00 40.59 2.87
338 339 6.700960 CACAACAAGTTATTTGCCATGAGAAA 59.299 34.615 0.00 0.00 40.59 2.52
339 340 7.385752 CACAACAAGTTATTTGCCATGAGAAAT 59.614 33.333 0.00 0.67 40.59 2.17
340 341 8.584157 ACAACAAGTTATTTGCCATGAGAAATA 58.416 29.630 0.00 0.00 40.59 1.40
341 342 8.863049 CAACAAGTTATTTGCCATGAGAAATAC 58.137 33.333 0.00 0.00 40.59 1.89
342 343 8.353423 ACAAGTTATTTGCCATGAGAAATACT 57.647 30.769 0.00 1.30 40.59 2.12
343 344 8.462016 ACAAGTTATTTGCCATGAGAAATACTC 58.538 33.333 0.00 0.00 41.82 2.59
344 345 7.573968 AGTTATTTGCCATGAGAAATACTCC 57.426 36.000 0.00 0.00 44.34 3.85
345 346 6.547510 AGTTATTTGCCATGAGAAATACTCCC 59.452 38.462 0.00 0.00 44.34 4.30
346 347 4.591321 TTTGCCATGAGAAATACTCCCT 57.409 40.909 0.00 0.00 44.34 4.20
347 348 3.845781 TGCCATGAGAAATACTCCCTC 57.154 47.619 0.00 0.00 44.34 4.30
348 349 3.387962 TGCCATGAGAAATACTCCCTCT 58.612 45.455 0.00 0.00 44.34 3.69
349 350 3.135348 TGCCATGAGAAATACTCCCTCTG 59.865 47.826 0.00 0.00 44.34 3.35
350 351 3.135530 GCCATGAGAAATACTCCCTCTGT 59.864 47.826 0.00 0.00 44.34 3.41
351 352 4.742138 GCCATGAGAAATACTCCCTCTGTC 60.742 50.000 0.00 0.00 44.34 3.51
352 353 4.653341 CCATGAGAAATACTCCCTCTGTCT 59.347 45.833 0.00 0.00 44.34 3.41
353 354 5.221422 CCATGAGAAATACTCCCTCTGTCTC 60.221 48.000 0.00 0.00 44.34 3.36
354 355 4.935578 TGAGAAATACTCCCTCTGTCTCA 58.064 43.478 0.00 0.00 44.34 3.27
355 356 5.333581 TGAGAAATACTCCCTCTGTCTCAA 58.666 41.667 0.00 0.00 44.34 3.02
356 357 5.780282 TGAGAAATACTCCCTCTGTCTCAAA 59.220 40.000 0.00 0.00 44.34 2.69
357 358 6.441924 TGAGAAATACTCCCTCTGTCTCAAAT 59.558 38.462 0.00 0.00 44.34 2.32
358 359 7.038017 TGAGAAATACTCCCTCTGTCTCAAATT 60.038 37.037 0.00 0.00 44.34 1.82
359 360 8.380742 AGAAATACTCCCTCTGTCTCAAATTA 57.619 34.615 0.00 0.00 0.00 1.40
360 361 8.997734 AGAAATACTCCCTCTGTCTCAAATTAT 58.002 33.333 0.00 0.00 0.00 1.28
364 365 7.979786 ACTCCCTCTGTCTCAAATTATAAGA 57.020 36.000 0.00 0.00 0.00 2.10
365 366 8.380742 ACTCCCTCTGTCTCAAATTATAAGAA 57.619 34.615 0.00 0.00 0.00 2.52
366 367 8.261522 ACTCCCTCTGTCTCAAATTATAAGAAC 58.738 37.037 0.00 0.00 0.00 3.01
367 368 7.265673 TCCCTCTGTCTCAAATTATAAGAACG 58.734 38.462 0.00 0.00 0.00 3.95
368 369 7.042335 CCCTCTGTCTCAAATTATAAGAACGT 58.958 38.462 0.00 0.00 0.00 3.99
369 370 7.549488 CCCTCTGTCTCAAATTATAAGAACGTT 59.451 37.037 0.00 0.00 0.00 3.99
370 371 8.936864 CCTCTGTCTCAAATTATAAGAACGTTT 58.063 33.333 0.46 0.00 0.00 3.60
387 388 9.925268 AAGAACGTTTTTAACACTACACTAATG 57.075 29.630 0.46 0.00 0.00 1.90
388 389 9.101655 AGAACGTTTTTAACACTACACTAATGT 57.898 29.630 0.46 0.00 43.30 2.71
389 390 9.361712 GAACGTTTTTAACACTACACTAATGTC 57.638 33.333 0.46 0.00 40.48 3.06
390 391 8.422973 ACGTTTTTAACACTACACTAATGTCA 57.577 30.769 0.00 0.00 40.48 3.58
391 392 8.881743 ACGTTTTTAACACTACACTAATGTCAA 58.118 29.630 0.00 0.00 40.48 3.18
392 393 9.705471 CGTTTTTAACACTACACTAATGTCAAA 57.295 29.630 0.00 0.00 40.48 2.69
396 397 9.705471 TTTAACACTACACTAATGTCAAAAACG 57.295 29.630 0.00 0.00 40.48 3.60
397 398 6.913873 ACACTACACTAATGTCAAAAACGT 57.086 33.333 0.00 0.00 40.48 3.99
398 399 7.311364 ACACTACACTAATGTCAAAAACGTT 57.689 32.000 0.00 0.00 40.48 3.99
399 400 7.754625 ACACTACACTAATGTCAAAAACGTTT 58.245 30.769 7.96 7.96 40.48 3.60
400 401 8.238631 ACACTACACTAATGTCAAAAACGTTTT 58.761 29.630 20.26 20.26 40.48 2.43
401 402 9.068008 CACTACACTAATGTCAAAAACGTTTTT 57.932 29.630 28.62 28.62 40.48 1.94
417 418 9.777575 AAAACGTTTTTATATTATGGAACGGAG 57.222 29.630 20.26 1.61 42.73 4.63
418 419 7.486802 ACGTTTTTATATTATGGAACGGAGG 57.513 36.000 17.40 0.00 42.73 4.30
419 420 6.484308 ACGTTTTTATATTATGGAACGGAGGG 59.516 38.462 17.40 1.16 42.73 4.30
420 421 6.707161 CGTTTTTATATTATGGAACGGAGGGA 59.293 38.462 10.56 0.00 36.99 4.20
421 422 7.095355 CGTTTTTATATTATGGAACGGAGGGAG 60.095 40.741 10.56 0.00 36.99 4.30
452 453 9.076781 TGATTTGTCATCCTTAAAAATCTGACA 57.923 29.630 7.66 0.00 40.69 3.58
473 474 7.592938 TGACATCAGATTTTTAGCATTTTCGT 58.407 30.769 0.00 0.00 0.00 3.85
489 490 0.963355 TCGTAACCAAATGGGCAGGC 60.963 55.000 4.17 0.00 42.05 4.85
788 816 1.010795 CCAGAAAATTCCCTCCCCCT 58.989 55.000 0.00 0.00 0.00 4.79
790 818 2.624293 CCAGAAAATTCCCTCCCCCTTC 60.624 54.545 0.00 0.00 0.00 3.46
794 822 2.165119 AATTCCCTCCCCCTTCCCCT 62.165 60.000 0.00 0.00 0.00 4.79
795 823 2.585523 ATTCCCTCCCCCTTCCCCTC 62.586 65.000 0.00 0.00 0.00 4.30
796 824 3.711782 CCCTCCCCCTTCCCCTCT 61.712 72.222 0.00 0.00 0.00 3.69
797 825 2.040359 CCTCCCCCTTCCCCTCTC 60.040 72.222 0.00 0.00 0.00 3.20
798 826 2.040359 CTCCCCCTTCCCCTCTCC 60.040 72.222 0.00 0.00 0.00 3.71
799 827 3.707189 TCCCCCTTCCCCTCTCCC 61.707 72.222 0.00 0.00 0.00 4.30
800 828 3.711782 CCCCCTTCCCCTCTCCCT 61.712 72.222 0.00 0.00 0.00 4.20
801 829 2.040359 CCCCTTCCCCTCTCCCTC 60.040 72.222 0.00 0.00 0.00 4.30
802 830 2.040359 CCCTTCCCCTCTCCCTCC 60.040 72.222 0.00 0.00 0.00 4.30
803 831 2.040359 CCTTCCCCTCTCCCTCCC 60.040 72.222 0.00 0.00 0.00 4.30
804 832 2.040359 CTTCCCCTCTCCCTCCCC 60.040 72.222 0.00 0.00 0.00 4.81
852 880 0.617535 CCCAAAATTCCCCACCCCTC 60.618 60.000 0.00 0.00 0.00 4.30
853 881 0.617535 CCAAAATTCCCCACCCCTCC 60.618 60.000 0.00 0.00 0.00 4.30
854 882 0.970427 CAAAATTCCCCACCCCTCCG 60.970 60.000 0.00 0.00 0.00 4.63
855 883 2.798445 AAAATTCCCCACCCCTCCGC 62.798 60.000 0.00 0.00 0.00 5.54
1223 1627 3.331293 CCGGCCTATGGGGAAAGT 58.669 61.111 0.00 0.00 37.23 2.66
1404 1813 1.943116 CTCAGCGACCTCCTGTCCTG 61.943 65.000 0.00 0.00 41.18 3.86
1440 1849 1.884075 TACGCTGCCACACCCTACTG 61.884 60.000 0.00 0.00 0.00 2.74
1442 1851 2.045926 CTGCCACACCCTACTGCC 60.046 66.667 0.00 0.00 0.00 4.85
1443 1852 3.628646 CTGCCACACCCTACTGCCC 62.629 68.421 0.00 0.00 0.00 5.36
1445 1854 1.993391 GCCACACCCTACTGCCCTA 60.993 63.158 0.00 0.00 0.00 3.53
1446 1855 1.972660 GCCACACCCTACTGCCCTAG 61.973 65.000 0.00 0.00 0.00 3.02
1447 1856 1.338136 CCACACCCTACTGCCCTAGG 61.338 65.000 0.06 0.06 34.04 3.02
1490 1903 4.822026 ACGTGTAGCTTGCTTCTATTCTT 58.178 39.130 0.00 0.00 0.00 2.52
1597 2011 4.650754 AATGATTCCAGCTCAAGAATGC 57.349 40.909 7.67 2.31 32.91 3.56
1605 2019 2.103373 AGCTCAAGAATGCGAGGTAGA 58.897 47.619 0.00 0.00 38.17 2.59
1612 2026 2.101582 AGAATGCGAGGTAGACCATGAC 59.898 50.000 0.66 0.00 38.89 3.06
1613 2027 1.485124 ATGCGAGGTAGACCATGACA 58.515 50.000 0.66 0.00 38.89 3.58
1614 2028 1.485124 TGCGAGGTAGACCATGACAT 58.515 50.000 0.66 0.00 38.89 3.06
1623 2037 4.202101 GGTAGACCATGACATCTCTGTGAG 60.202 50.000 0.00 0.00 33.74 3.51
1635 2049 4.258702 TCTCTGTGAGTAAAGGTTCTGC 57.741 45.455 0.00 0.00 0.00 4.26
1639 2053 2.364324 TGTGAGTAAAGGTTCTGCGAGT 59.636 45.455 0.00 0.00 0.00 4.18
1672 2086 3.020984 GGAGGAGACTACTCTTGTCAGG 58.979 54.545 14.53 0.00 44.43 3.86
1764 2178 2.549332 GAGTGGCAACTCCTCTTGC 58.451 57.895 10.43 0.00 46.15 4.01
1781 2195 1.375908 GCGAATGGCTCTGTCACCA 60.376 57.895 0.00 0.00 41.06 4.17
1812 2226 0.474660 ACTGGGGGAGCTTCTCTTGT 60.475 55.000 0.00 0.00 0.00 3.16
1813 2227 0.035630 CTGGGGGAGCTTCTCTTGTG 60.036 60.000 0.00 0.00 0.00 3.33
1814 2228 0.473694 TGGGGGAGCTTCTCTTGTGA 60.474 55.000 0.00 0.00 0.00 3.58
1815 2229 0.915364 GGGGGAGCTTCTCTTGTGAT 59.085 55.000 0.00 0.00 0.00 3.06
1816 2230 1.283321 GGGGGAGCTTCTCTTGTGATT 59.717 52.381 0.00 0.00 0.00 2.57
1817 2231 2.363683 GGGGAGCTTCTCTTGTGATTG 58.636 52.381 0.00 0.00 0.00 2.67
1864 2278 7.158021 CAGAAGTTATGAGTGGAGTTTCTCTT 58.842 38.462 0.00 0.00 0.00 2.85
1899 2313 2.254471 GGGGGCGAGAAGTTTCAAC 58.746 57.895 0.00 0.00 0.00 3.18
1927 2341 4.808414 TTCTCTTGTGAGTGGATCGATT 57.192 40.909 0.00 0.00 40.98 3.34
2025 2439 1.942657 TCTTGTGAGTGAAGCTGCAAC 59.057 47.619 0.00 0.00 0.00 4.17
2026 2440 1.945394 CTTGTGAGTGAAGCTGCAACT 59.055 47.619 0.00 2.10 0.00 3.16
2027 2441 1.302366 TGTGAGTGAAGCTGCAACTG 58.698 50.000 0.00 0.00 0.00 3.16
2028 2442 1.134431 TGTGAGTGAAGCTGCAACTGA 60.134 47.619 0.00 0.00 0.00 3.41
2029 2443 1.530293 GTGAGTGAAGCTGCAACTGAG 59.470 52.381 0.00 0.00 0.00 3.35
2030 2444 1.155042 GAGTGAAGCTGCAACTGAGG 58.845 55.000 0.00 0.00 0.00 3.86
2031 2445 0.888285 AGTGAAGCTGCAACTGAGGC 60.888 55.000 0.00 0.00 0.00 4.70
2032 2446 1.148949 TGAAGCTGCAACTGAGGCA 59.851 52.632 1.02 0.00 39.32 4.75
2037 2451 2.831043 TGCAACTGAGGCAGCAGA 59.169 55.556 13.32 0.00 39.20 4.26
2038 2452 1.377612 TGCAACTGAGGCAGCAGAT 59.622 52.632 13.32 0.00 39.20 2.90
2039 2453 0.958876 TGCAACTGAGGCAGCAGATG 60.959 55.000 13.32 12.32 40.42 2.90
2040 2454 0.959372 GCAACTGAGGCAGCAGATGT 60.959 55.000 13.32 0.00 39.85 3.06
2041 2455 1.676916 GCAACTGAGGCAGCAGATGTA 60.677 52.381 13.32 0.00 39.85 2.29
2042 2456 2.277969 CAACTGAGGCAGCAGATGTAG 58.722 52.381 13.32 0.00 39.20 2.74
2043 2457 0.177604 ACTGAGGCAGCAGATGTAGC 59.822 55.000 13.32 0.00 39.20 3.58
2046 2460 3.819188 GGCAGCAGATGTAGCCAC 58.181 61.111 11.25 0.00 46.26 5.01
2047 2461 1.821332 GGCAGCAGATGTAGCCACC 60.821 63.158 11.25 0.00 46.26 4.61
2048 2462 1.222936 GCAGCAGATGTAGCCACCT 59.777 57.895 0.00 0.00 0.00 4.00
2049 2463 0.813210 GCAGCAGATGTAGCCACCTC 60.813 60.000 0.00 0.00 0.00 3.85
2050 2464 0.538584 CAGCAGATGTAGCCACCTCA 59.461 55.000 0.00 0.00 0.00 3.86
2051 2465 1.140452 CAGCAGATGTAGCCACCTCAT 59.860 52.381 0.00 0.00 0.00 2.90
2052 2466 1.415659 AGCAGATGTAGCCACCTCATC 59.584 52.381 0.00 0.00 38.43 2.92
2053 2467 1.139654 GCAGATGTAGCCACCTCATCA 59.860 52.381 0.00 0.00 39.96 3.07
2054 2468 2.806019 GCAGATGTAGCCACCTCATCAG 60.806 54.545 0.00 0.00 39.96 2.90
2055 2469 2.045524 AGATGTAGCCACCTCATCAGG 58.954 52.381 0.00 0.00 46.87 3.86
2056 2470 2.042464 GATGTAGCCACCTCATCAGGA 58.958 52.381 0.00 0.00 43.65 3.86
2057 2471 1.951209 TGTAGCCACCTCATCAGGAA 58.049 50.000 0.00 0.00 43.65 3.36
2058 2472 2.481441 TGTAGCCACCTCATCAGGAAT 58.519 47.619 0.00 0.00 43.65 3.01
2059 2473 2.846206 TGTAGCCACCTCATCAGGAATT 59.154 45.455 0.00 0.00 43.65 2.17
2060 2474 4.037222 TGTAGCCACCTCATCAGGAATTA 58.963 43.478 0.00 0.00 43.65 1.40
2061 2475 3.567478 AGCCACCTCATCAGGAATTAC 57.433 47.619 0.00 0.00 43.65 1.89
2062 2476 2.846206 AGCCACCTCATCAGGAATTACA 59.154 45.455 0.00 0.00 43.65 2.41
2063 2477 3.266772 AGCCACCTCATCAGGAATTACAA 59.733 43.478 0.00 0.00 43.65 2.41
2064 2478 3.378427 GCCACCTCATCAGGAATTACAAC 59.622 47.826 0.00 0.00 43.65 3.32
2065 2479 3.947834 CCACCTCATCAGGAATTACAACC 59.052 47.826 0.00 0.00 43.65 3.77
2066 2480 3.623060 CACCTCATCAGGAATTACAACCG 59.377 47.826 0.00 0.00 43.65 4.44
2067 2481 3.206150 CCTCATCAGGAATTACAACCGG 58.794 50.000 0.00 0.00 43.65 5.28
2068 2482 3.206150 CTCATCAGGAATTACAACCGGG 58.794 50.000 6.32 0.00 0.00 5.73
2069 2483 2.092646 TCATCAGGAATTACAACCGGGG 60.093 50.000 6.32 0.00 0.00 5.73
2070 2484 0.034863 TCAGGAATTACAACCGGGGC 60.035 55.000 6.32 0.00 0.00 5.80
2071 2485 0.034477 CAGGAATTACAACCGGGGCT 60.034 55.000 6.32 0.00 0.00 5.19
2072 2486 0.255033 AGGAATTACAACCGGGGCTC 59.745 55.000 6.32 0.00 0.00 4.70
2073 2487 0.750546 GGAATTACAACCGGGGCTCC 60.751 60.000 6.32 0.00 0.00 4.70
2074 2488 0.750546 GAATTACAACCGGGGCTCCC 60.751 60.000 6.32 0.00 41.09 4.30
2084 2498 2.843545 GGGCTCCCCTTGACAACA 59.156 61.111 0.00 0.00 41.34 3.33
2085 2499 1.152830 GGGCTCCCCTTGACAACAA 59.847 57.895 0.00 0.00 41.34 2.83
2086 2500 0.469144 GGGCTCCCCTTGACAACAAA 60.469 55.000 0.00 0.00 41.34 2.83
2087 2501 0.961753 GGCTCCCCTTGACAACAAAG 59.038 55.000 0.00 0.00 35.49 2.77
2088 2502 0.961753 GCTCCCCTTGACAACAAAGG 59.038 55.000 0.00 0.00 37.36 3.11
2089 2503 0.961753 CTCCCCTTGACAACAAAGGC 59.038 55.000 0.00 0.00 36.56 4.35
2090 2504 0.821711 TCCCCTTGACAACAAAGGCG 60.822 55.000 0.00 0.00 36.56 5.52
2091 2505 1.106944 CCCCTTGACAACAAAGGCGT 61.107 55.000 0.00 0.00 36.56 5.68
2092 2506 0.744281 CCCTTGACAACAAAGGCGTT 59.256 50.000 0.00 0.00 35.49 4.84
2098 2512 3.871775 CAACAAAGGCGTTGCAGAT 57.128 47.368 13.15 0.00 41.31 2.90
2099 2513 1.689959 CAACAAAGGCGTTGCAGATC 58.310 50.000 13.15 0.00 41.31 2.75
2100 2514 0.598065 AACAAAGGCGTTGCAGATCC 59.402 50.000 13.15 0.00 41.31 3.36
2101 2515 0.537143 ACAAAGGCGTTGCAGATCCA 60.537 50.000 13.15 0.00 41.31 3.41
2102 2516 0.169672 CAAAGGCGTTGCAGATCCAG 59.830 55.000 0.00 0.00 0.00 3.86
2103 2517 0.036732 AAAGGCGTTGCAGATCCAGA 59.963 50.000 0.00 0.00 0.00 3.86
2104 2518 0.254178 AAGGCGTTGCAGATCCAGAT 59.746 50.000 0.00 0.00 0.00 2.90
2105 2519 1.123077 AGGCGTTGCAGATCCAGATA 58.877 50.000 0.00 0.00 0.00 1.98
2106 2520 1.202580 AGGCGTTGCAGATCCAGATAC 60.203 52.381 0.00 0.00 0.00 2.24
2107 2521 1.202580 GGCGTTGCAGATCCAGATACT 60.203 52.381 0.00 0.00 0.00 2.12
2108 2522 1.863454 GCGTTGCAGATCCAGATACTG 59.137 52.381 0.00 0.00 35.14 2.74
2109 2523 2.481969 GCGTTGCAGATCCAGATACTGA 60.482 50.000 0.00 0.00 32.44 3.41
2110 2524 3.785486 CGTTGCAGATCCAGATACTGAA 58.215 45.455 0.00 0.00 32.44 3.02
2111 2525 4.183865 CGTTGCAGATCCAGATACTGAAA 58.816 43.478 0.00 0.00 32.44 2.69
2112 2526 4.813161 CGTTGCAGATCCAGATACTGAAAT 59.187 41.667 0.00 0.00 32.76 2.17
2113 2527 5.277202 CGTTGCAGATCCAGATACTGAAATG 60.277 44.000 0.00 0.00 32.76 2.32
2114 2528 4.711399 TGCAGATCCAGATACTGAAATGG 58.289 43.478 0.00 0.00 32.44 3.16
2115 2529 4.070716 GCAGATCCAGATACTGAAATGGG 58.929 47.826 0.00 0.00 32.44 4.00
2116 2530 4.202398 GCAGATCCAGATACTGAAATGGGA 60.202 45.833 0.00 0.00 32.44 4.37
2117 2531 5.549347 CAGATCCAGATACTGAAATGGGAG 58.451 45.833 0.00 0.00 32.44 4.30
2118 2532 3.845781 TCCAGATACTGAAATGGGAGC 57.154 47.619 0.00 0.00 32.44 4.70
2119 2533 3.387962 TCCAGATACTGAAATGGGAGCT 58.612 45.455 0.00 0.00 32.44 4.09
2120 2534 3.389329 TCCAGATACTGAAATGGGAGCTC 59.611 47.826 4.71 4.71 32.44 4.09
2121 2535 3.495806 CCAGATACTGAAATGGGAGCTCC 60.496 52.174 25.59 25.59 32.44 4.70
2122 2536 3.390639 CAGATACTGAAATGGGAGCTCCT 59.609 47.826 31.36 12.70 32.74 3.69
2123 2537 4.590647 CAGATACTGAAATGGGAGCTCCTA 59.409 45.833 31.36 27.17 32.74 2.94
2124 2538 4.591072 AGATACTGAAATGGGAGCTCCTAC 59.409 45.833 31.36 16.92 36.20 3.18
2125 2539 1.840635 ACTGAAATGGGAGCTCCTACC 59.159 52.381 31.36 18.26 34.37 3.18
2129 2543 4.728780 TGGGAGCTCCTACCATCC 57.271 61.111 31.36 13.93 39.99 3.51
2130 2544 1.709711 TGGGAGCTCCTACCATCCA 59.290 57.895 31.36 16.45 39.99 3.41
2131 2545 0.268869 TGGGAGCTCCTACCATCCAT 59.731 55.000 31.36 0.00 39.99 3.41
2132 2546 1.345422 TGGGAGCTCCTACCATCCATT 60.345 52.381 31.36 0.00 39.99 3.16
2133 2547 1.777272 GGGAGCTCCTACCATCCATTT 59.223 52.381 31.36 0.00 33.84 2.32
2134 2548 2.979678 GGGAGCTCCTACCATCCATTTA 59.020 50.000 31.36 0.00 33.84 1.40
2135 2549 3.589288 GGGAGCTCCTACCATCCATTTAT 59.411 47.826 31.36 0.00 33.84 1.40
2136 2550 4.323868 GGGAGCTCCTACCATCCATTTATC 60.324 50.000 31.36 5.75 33.84 1.75
2137 2551 4.534103 GGAGCTCCTACCATCCATTTATCT 59.466 45.833 26.25 0.00 0.00 1.98
2138 2552 5.486526 GAGCTCCTACCATCCATTTATCTG 58.513 45.833 0.87 0.00 0.00 2.90
2139 2553 4.006319 GCTCCTACCATCCATTTATCTGC 58.994 47.826 0.00 0.00 0.00 4.26
2140 2554 4.263243 GCTCCTACCATCCATTTATCTGCT 60.263 45.833 0.00 0.00 0.00 4.24
2141 2555 5.747248 GCTCCTACCATCCATTTATCTGCTT 60.747 44.000 0.00 0.00 0.00 3.91
2142 2556 6.520742 GCTCCTACCATCCATTTATCTGCTTA 60.521 42.308 0.00 0.00 0.00 3.09
2143 2557 7.574021 TCCTACCATCCATTTATCTGCTTAT 57.426 36.000 0.00 0.00 0.00 1.73
2144 2558 7.397221 TCCTACCATCCATTTATCTGCTTATG 58.603 38.462 0.00 0.00 0.00 1.90
2145 2559 7.237471 TCCTACCATCCATTTATCTGCTTATGA 59.763 37.037 0.00 0.00 0.00 2.15
2146 2560 7.884877 CCTACCATCCATTTATCTGCTTATGAA 59.115 37.037 0.00 0.00 0.00 2.57
2147 2561 7.756395 ACCATCCATTTATCTGCTTATGAAG 57.244 36.000 0.00 0.00 0.00 3.02
2176 2590 2.328235 GGCAGCAGATGTAGCCATG 58.672 57.895 11.25 0.00 46.26 3.66
2237 2780 2.286294 GGTGTCGCAGAGCAAGATATTG 59.714 50.000 0.00 0.00 36.95 1.90
2257 2800 0.251341 AAATGGGCGCTTCTCCTGTT 60.251 50.000 7.64 0.00 0.00 3.16
2290 2833 1.909141 CTGAAGCTGCAACTGAGGCG 61.909 60.000 1.02 0.00 0.00 5.52
2434 2977 1.369839 TAGTCGCCGCTCTGAGAGTG 61.370 60.000 15.80 15.80 39.58 3.51
2452 2995 4.101741 AGAGTGACAACTGTAGCTTCCTTT 59.898 41.667 0.00 0.00 36.52 3.11
2509 3052 2.652590 GAAGCTTCTCCTGCCAATGAT 58.347 47.619 19.44 0.00 0.00 2.45
2526 3069 1.475280 TGATTCTGCTGCTGAAATGGC 59.525 47.619 22.78 13.98 0.00 4.40
2540 3083 5.565439 GCTGAAATGGCTTTTGTACACTCAT 60.565 40.000 2.78 0.00 0.00 2.90
2686 3229 0.108662 CAGCAGATGTAGTCACCGCA 60.109 55.000 0.00 0.00 0.00 5.69
2737 3280 1.531259 TGAAGGCACTGCAGAACCA 59.469 52.632 23.35 6.32 40.52 3.67
2911 3454 2.996621 CCTCGACACTGAAGTTTCCATC 59.003 50.000 0.00 0.00 0.00 3.51
2932 3475 2.163815 CGAACCAGAAGATACAGGTCGT 59.836 50.000 0.00 0.00 32.05 4.34
2942 3485 4.345854 AGATACAGGTCGTCCTTCTCTTT 58.654 43.478 0.00 0.00 43.07 2.52
2977 3520 3.011119 CGAATTGGAAATTACACGGGGA 58.989 45.455 0.00 0.00 0.00 4.81
3041 3590 2.012673 GCCAAGCTTGTAGTGGAGATG 58.987 52.381 24.35 6.67 34.05 2.90
3159 3708 2.626266 TGCAACCTTCTAGAGACGACAA 59.374 45.455 0.00 0.00 0.00 3.18
3174 3723 2.635915 ACGACAAGGGAGATGTTGGTTA 59.364 45.455 0.00 0.00 36.65 2.85
3254 3803 2.815211 CACAGGATGACGCACCCG 60.815 66.667 0.00 0.00 39.69 5.28
3308 3857 5.251700 AGAAGTGTTGGTAAATCAGGGAGAT 59.748 40.000 0.00 0.00 39.09 2.75
3466 4015 0.987715 CTTGTGAGAGTGCGATGTCG 59.012 55.000 0.00 0.00 43.27 4.35
3548 4097 2.610479 GCCTCAAGCAAGGGTAAAAAGC 60.610 50.000 2.46 0.00 42.97 3.51
3665 4214 2.676076 AGTCATGCGGCAAACATTTTC 58.324 42.857 6.82 0.00 0.00 2.29
3730 4279 1.071699 GAGGCACCTTACAAGTGTCCA 59.928 52.381 0.00 0.00 40.79 4.02
3887 4436 1.952296 GGCATAGGATGAGGTGCAAAG 59.048 52.381 0.00 0.00 39.27 2.77
3988 4537 5.799827 TTATTTGTTGGAAGTTCCTTGGG 57.200 39.130 22.41 0.00 37.46 4.12
4092 4641 9.726438 TTAGAAGCTTTAACTATGCTTTTCTCT 57.274 29.630 0.00 0.00 44.57 3.10
4133 4682 6.009589 TCCAAAAGCTGTTTGATAAGATCCA 58.990 36.000 17.53 0.00 0.00 3.41
4316 4868 4.460948 AGATGGCCTGTTTATTTTGCTG 57.539 40.909 3.32 0.00 0.00 4.41
4317 4869 2.453983 TGGCCTGTTTATTTTGCTGC 57.546 45.000 3.32 0.00 0.00 5.25
4382 4942 2.656560 TTGGTGTTGTTGGGTTTTCG 57.343 45.000 0.00 0.00 0.00 3.46
4592 5365 2.297701 TGGCTCTGAACTTGGTCAAAC 58.702 47.619 0.00 0.00 0.00 2.93
4680 5455 0.033228 GGCGAGTGGGAGAGATGATG 59.967 60.000 0.00 0.00 0.00 3.07
4790 5572 8.801715 CATAATTGTATGGGGAATTTTTCTCG 57.198 34.615 0.00 0.00 34.54 4.04
4794 5576 4.703093 TGTATGGGGAATTTTTCTCGGTTC 59.297 41.667 0.00 0.00 0.00 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.521062 ATCGCCGACAGGAGCTGC 62.521 66.667 0.00 0.00 41.02 5.25
26 27 2.584418 CATCGCCGACAGGAGCTG 60.584 66.667 0.00 0.00 41.02 4.24
27 28 3.842923 CCATCGCCGACAGGAGCT 61.843 66.667 1.40 0.00 41.02 4.09
28 29 4.899239 CCCATCGCCGACAGGAGC 62.899 72.222 8.83 0.00 41.02 4.70
29 30 4.227134 CCCCATCGCCGACAGGAG 62.227 72.222 8.83 0.00 41.02 3.69
32 33 4.227134 CTCCCCCATCGCCGACAG 62.227 72.222 0.00 0.00 0.00 3.51
33 34 4.770362 TCTCCCCCATCGCCGACA 62.770 66.667 0.00 0.00 0.00 4.35
34 35 3.917760 CTCTCCCCCATCGCCGAC 61.918 72.222 0.00 0.00 0.00 4.79
35 36 4.137615 TCTCTCCCCCATCGCCGA 62.138 66.667 0.00 0.00 0.00 5.54
36 37 3.610669 CTCTCTCCCCCATCGCCG 61.611 72.222 0.00 0.00 0.00 6.46
37 38 3.237741 CCTCTCTCCCCCATCGCC 61.238 72.222 0.00 0.00 0.00 5.54
38 39 3.237741 CCCTCTCTCCCCCATCGC 61.238 72.222 0.00 0.00 0.00 4.58
39 40 1.532794 CTCCCTCTCTCCCCCATCG 60.533 68.421 0.00 0.00 0.00 3.84
40 41 0.178935 CTCTCCCTCTCTCCCCCATC 60.179 65.000 0.00 0.00 0.00 3.51
41 42 1.673928 CCTCTCCCTCTCTCCCCCAT 61.674 65.000 0.00 0.00 0.00 4.00
42 43 2.328589 CCTCTCCCTCTCTCCCCCA 61.329 68.421 0.00 0.00 0.00 4.96
43 44 2.612251 CCTCTCCCTCTCTCCCCC 59.388 72.222 0.00 0.00 0.00 5.40
44 45 2.123033 GCCTCTCCCTCTCTCCCC 60.123 72.222 0.00 0.00 0.00 4.81
45 46 2.520741 CGCCTCTCCCTCTCTCCC 60.521 72.222 0.00 0.00 0.00 4.30
46 47 2.520741 CCGCCTCTCCCTCTCTCC 60.521 72.222 0.00 0.00 0.00 3.71
47 48 3.223589 GCCGCCTCTCCCTCTCTC 61.224 72.222 0.00 0.00 0.00 3.20
101 102 2.286962 AACCTTAGCCCCTCCCCC 60.287 66.667 0.00 0.00 0.00 5.40
102 103 3.007542 CAACCTTAGCCCCTCCCC 58.992 66.667 0.00 0.00 0.00 4.81
103 104 2.275748 GCAACCTTAGCCCCTCCC 59.724 66.667 0.00 0.00 0.00 4.30
104 105 2.275748 GGCAACCTTAGCCCCTCC 59.724 66.667 0.00 0.00 46.50 4.30
110 111 1.807142 GACAAGTCTGGCAACCTTAGC 59.193 52.381 0.00 0.00 0.00 3.09
111 112 3.330267 GAGACAAGTCTGGCAACCTTAG 58.670 50.000 7.57 0.00 40.61 2.18
112 113 2.038557 GGAGACAAGTCTGGCAACCTTA 59.961 50.000 7.57 0.00 40.61 2.69
113 114 1.202818 GGAGACAAGTCTGGCAACCTT 60.203 52.381 7.57 0.00 40.61 3.50
114 115 0.398318 GGAGACAAGTCTGGCAACCT 59.602 55.000 7.57 0.00 40.61 3.50
115 116 0.606673 GGGAGACAAGTCTGGCAACC 60.607 60.000 7.57 2.07 40.61 3.77
116 117 0.951040 CGGGAGACAAGTCTGGCAAC 60.951 60.000 7.57 0.00 40.61 4.17
117 118 1.371183 CGGGAGACAAGTCTGGCAA 59.629 57.895 7.57 0.00 40.61 4.52
118 119 3.059982 CGGGAGACAAGTCTGGCA 58.940 61.111 7.57 0.00 40.61 4.92
119 120 2.435059 GCGGGAGACAAGTCTGGC 60.435 66.667 7.57 4.79 40.61 4.85
120 121 2.125912 CGCGGGAGACAAGTCTGG 60.126 66.667 7.57 0.00 40.61 3.86
121 122 1.934220 TAGCGCGGGAGACAAGTCTG 61.934 60.000 8.83 0.00 40.61 3.51
122 123 1.677966 TAGCGCGGGAGACAAGTCT 60.678 57.895 8.83 1.68 43.78 3.24
123 124 1.516603 GTAGCGCGGGAGACAAGTC 60.517 63.158 8.83 0.00 0.00 3.01
124 125 1.812686 TTGTAGCGCGGGAGACAAGT 61.813 55.000 8.83 0.00 0.00 3.16
125 126 0.669318 TTTGTAGCGCGGGAGACAAG 60.669 55.000 8.83 0.00 33.60 3.16
126 127 0.036765 ATTTGTAGCGCGGGAGACAA 60.037 50.000 8.83 13.31 0.00 3.18
127 128 0.036765 AATTTGTAGCGCGGGAGACA 60.037 50.000 8.83 2.96 0.00 3.41
128 129 1.084289 AAATTTGTAGCGCGGGAGAC 58.916 50.000 8.83 0.00 0.00 3.36
129 130 1.816074 AAAATTTGTAGCGCGGGAGA 58.184 45.000 8.83 0.00 0.00 3.71
130 131 2.629639 AAAAATTTGTAGCGCGGGAG 57.370 45.000 8.83 0.00 0.00 4.30
131 132 4.228317 GTTTAAAAATTTGTAGCGCGGGA 58.772 39.130 8.83 0.00 0.00 5.14
132 133 3.982058 TGTTTAAAAATTTGTAGCGCGGG 59.018 39.130 8.83 0.00 0.00 6.13
133 134 5.443955 CCATGTTTAAAAATTTGTAGCGCGG 60.444 40.000 8.83 0.00 0.00 6.46
134 135 5.537410 CCATGTTTAAAAATTTGTAGCGCG 58.463 37.500 0.00 0.00 0.00 6.86
135 136 5.107298 TGCCATGTTTAAAAATTTGTAGCGC 60.107 36.000 0.00 0.00 0.00 5.92
136 137 6.459257 TGCCATGTTTAAAAATTTGTAGCG 57.541 33.333 0.00 0.00 0.00 4.26
137 138 9.676195 ATTTTGCCATGTTTAAAAATTTGTAGC 57.324 25.926 0.00 0.00 30.10 3.58
139 140 9.869844 CGATTTTGCCATGTTTAAAAATTTGTA 57.130 25.926 0.00 0.00 33.54 2.41
140 141 8.616076 TCGATTTTGCCATGTTTAAAAATTTGT 58.384 25.926 0.00 0.00 33.54 2.83
141 142 9.443283 TTCGATTTTGCCATGTTTAAAAATTTG 57.557 25.926 0.00 0.00 33.54 2.32
143 144 9.662545 CTTTCGATTTTGCCATGTTTAAAAATT 57.337 25.926 0.00 0.00 33.54 1.82
144 145 8.835439 ACTTTCGATTTTGCCATGTTTAAAAAT 58.165 25.926 0.00 0.00 35.50 1.82
145 146 8.202745 ACTTTCGATTTTGCCATGTTTAAAAA 57.797 26.923 0.00 0.00 0.00 1.94
146 147 7.778470 ACTTTCGATTTTGCCATGTTTAAAA 57.222 28.000 0.00 0.00 0.00 1.52
147 148 7.778470 AACTTTCGATTTTGCCATGTTTAAA 57.222 28.000 0.00 0.00 0.00 1.52
148 149 7.401484 GAACTTTCGATTTTGCCATGTTTAA 57.599 32.000 0.00 0.00 0.00 1.52
150 151 5.905480 GAACTTTCGATTTTGCCATGTTT 57.095 34.783 0.00 0.00 0.00 2.83
165 166 5.077424 CGTAATTTGCCACTACGAACTTTC 58.923 41.667 0.00 0.00 40.61 2.62
166 167 4.512571 ACGTAATTTGCCACTACGAACTTT 59.487 37.500 7.76 0.00 40.61 2.66
167 168 4.060205 ACGTAATTTGCCACTACGAACTT 58.940 39.130 7.76 0.00 40.61 2.66
168 169 3.430895 CACGTAATTTGCCACTACGAACT 59.569 43.478 7.76 0.00 40.61 3.01
169 170 3.184986 ACACGTAATTTGCCACTACGAAC 59.815 43.478 7.76 0.00 40.61 3.95
170 171 3.391965 ACACGTAATTTGCCACTACGAA 58.608 40.909 7.76 0.00 40.61 3.85
171 172 2.988493 GACACGTAATTTGCCACTACGA 59.012 45.455 7.76 0.00 40.61 3.43
172 173 2.222420 CGACACGTAATTTGCCACTACG 60.222 50.000 0.00 0.00 43.08 3.51
173 174 2.473376 GCGACACGTAATTTGCCACTAC 60.473 50.000 0.00 0.00 0.00 2.73
174 175 1.727880 GCGACACGTAATTTGCCACTA 59.272 47.619 0.00 0.00 0.00 2.74
175 176 0.515564 GCGACACGTAATTTGCCACT 59.484 50.000 0.00 0.00 0.00 4.00
176 177 0.787908 CGCGACACGTAATTTGCCAC 60.788 55.000 0.00 0.00 36.87 5.01
177 178 0.944788 TCGCGACACGTAATTTGCCA 60.945 50.000 3.71 0.00 44.19 4.92
178 179 0.247145 CTCGCGACACGTAATTTGCC 60.247 55.000 3.71 0.00 44.19 4.52
179 180 0.852007 GCTCGCGACACGTAATTTGC 60.852 55.000 3.71 0.00 44.19 3.68
180 181 0.247145 GGCTCGCGACACGTAATTTG 60.247 55.000 3.71 0.00 44.19 2.32
181 182 0.389426 AGGCTCGCGACACGTAATTT 60.389 50.000 3.71 0.00 44.19 1.82
182 183 0.452987 TAGGCTCGCGACACGTAATT 59.547 50.000 3.71 0.00 44.19 1.40
183 184 0.666913 ATAGGCTCGCGACACGTAAT 59.333 50.000 3.71 0.00 44.19 1.89
184 185 0.028505 GATAGGCTCGCGACACGTAA 59.971 55.000 3.71 0.00 44.19 3.18
185 186 1.091197 TGATAGGCTCGCGACACGTA 61.091 55.000 3.71 7.00 44.19 3.57
186 187 1.929806 TTGATAGGCTCGCGACACGT 61.930 55.000 3.71 4.63 44.19 4.49
187 188 0.595053 ATTGATAGGCTCGCGACACG 60.595 55.000 3.71 0.00 45.62 4.49
188 189 1.523095 GAATTGATAGGCTCGCGACAC 59.477 52.381 3.71 0.00 0.00 3.67
189 190 1.409064 AGAATTGATAGGCTCGCGACA 59.591 47.619 3.71 0.00 0.00 4.35
190 191 2.055100 GAGAATTGATAGGCTCGCGAC 58.945 52.381 3.71 1.87 0.00 5.19
191 192 1.957177 AGAGAATTGATAGGCTCGCGA 59.043 47.619 9.26 9.26 32.80 5.87
192 193 2.430546 AGAGAATTGATAGGCTCGCG 57.569 50.000 0.00 0.00 32.80 5.87
193 194 3.722147 TGAAGAGAATTGATAGGCTCGC 58.278 45.455 0.00 0.00 32.80 5.03
194 195 3.740321 GCTGAAGAGAATTGATAGGCTCG 59.260 47.826 0.00 0.00 32.80 5.03
195 196 4.701765 TGCTGAAGAGAATTGATAGGCTC 58.298 43.478 0.00 0.00 0.00 4.70
196 197 4.767578 TGCTGAAGAGAATTGATAGGCT 57.232 40.909 0.00 0.00 0.00 4.58
197 198 4.880696 ACTTGCTGAAGAGAATTGATAGGC 59.119 41.667 0.00 0.00 32.98 3.93
198 199 7.930325 TCATACTTGCTGAAGAGAATTGATAGG 59.070 37.037 0.00 0.00 32.98 2.57
199 200 8.763356 GTCATACTTGCTGAAGAGAATTGATAG 58.237 37.037 0.00 0.00 32.98 2.08
200 201 8.260114 TGTCATACTTGCTGAAGAGAATTGATA 58.740 33.333 0.00 0.00 32.98 2.15
201 202 7.108194 TGTCATACTTGCTGAAGAGAATTGAT 58.892 34.615 0.00 0.00 32.98 2.57
202 203 6.466812 TGTCATACTTGCTGAAGAGAATTGA 58.533 36.000 0.00 0.00 32.98 2.57
203 204 6.732531 TGTCATACTTGCTGAAGAGAATTG 57.267 37.500 0.00 0.00 32.98 2.32
204 205 7.750229 TTTGTCATACTTGCTGAAGAGAATT 57.250 32.000 0.00 0.00 32.98 2.17
205 206 7.066766 GGATTTGTCATACTTGCTGAAGAGAAT 59.933 37.037 0.00 0.00 32.98 2.40
206 207 6.372659 GGATTTGTCATACTTGCTGAAGAGAA 59.627 38.462 0.00 0.00 32.98 2.87
207 208 5.877012 GGATTTGTCATACTTGCTGAAGAGA 59.123 40.000 0.00 0.00 32.98 3.10
208 209 5.879223 AGGATTTGTCATACTTGCTGAAGAG 59.121 40.000 0.00 0.00 32.98 2.85
209 210 5.645067 CAGGATTTGTCATACTTGCTGAAGA 59.355 40.000 0.00 0.00 32.98 2.87
210 211 5.645067 TCAGGATTTGTCATACTTGCTGAAG 59.355 40.000 0.00 0.00 35.07 3.02
211 212 5.412594 GTCAGGATTTGTCATACTTGCTGAA 59.587 40.000 0.00 0.00 0.00 3.02
212 213 4.937620 GTCAGGATTTGTCATACTTGCTGA 59.062 41.667 0.00 0.00 0.00 4.26
213 214 4.696877 TGTCAGGATTTGTCATACTTGCTG 59.303 41.667 0.00 0.00 0.00 4.41
214 215 4.910195 TGTCAGGATTTGTCATACTTGCT 58.090 39.130 0.00 0.00 0.00 3.91
215 216 5.824904 ATGTCAGGATTTGTCATACTTGC 57.175 39.130 0.00 0.00 34.46 4.01
216 217 9.112725 TGAATATGTCAGGATTTGTCATACTTG 57.887 33.333 0.00 0.00 39.48 3.16
274 275 0.458669 GTGAGCATGGCAAATCCTGG 59.541 55.000 0.00 0.00 35.26 4.45
275 276 0.458669 GGTGAGCATGGCAAATCCTG 59.541 55.000 0.00 0.00 35.26 3.86
276 277 1.033746 CGGTGAGCATGGCAAATCCT 61.034 55.000 0.00 0.00 35.26 3.24
277 278 1.031571 TCGGTGAGCATGGCAAATCC 61.032 55.000 0.00 0.00 0.00 3.01
278 279 0.810648 TTCGGTGAGCATGGCAAATC 59.189 50.000 0.00 0.00 0.00 2.17
279 280 1.135527 CATTCGGTGAGCATGGCAAAT 59.864 47.619 0.00 0.00 0.00 2.32
280 281 0.527113 CATTCGGTGAGCATGGCAAA 59.473 50.000 0.00 0.00 0.00 3.68
281 282 0.322366 TCATTCGGTGAGCATGGCAA 60.322 50.000 0.00 0.00 31.80 4.52
282 283 0.322366 TTCATTCGGTGAGCATGGCA 60.322 50.000 0.00 0.00 38.29 4.92
283 284 0.810648 TTTCATTCGGTGAGCATGGC 59.189 50.000 0.00 0.00 38.29 4.40
284 285 3.441163 CAATTTCATTCGGTGAGCATGG 58.559 45.455 0.00 0.00 38.29 3.66
285 286 2.855963 GCAATTTCATTCGGTGAGCATG 59.144 45.455 0.00 0.00 38.29 4.06
286 287 2.159198 GGCAATTTCATTCGGTGAGCAT 60.159 45.455 0.00 0.00 38.29 3.79
287 288 1.202114 GGCAATTTCATTCGGTGAGCA 59.798 47.619 0.00 0.00 38.29 4.26
288 289 1.202114 TGGCAATTTCATTCGGTGAGC 59.798 47.619 0.00 0.00 38.29 4.26
289 290 3.441163 CATGGCAATTTCATTCGGTGAG 58.559 45.455 0.00 0.00 38.29 3.51
290 291 2.417107 GCATGGCAATTTCATTCGGTGA 60.417 45.455 0.00 0.00 34.25 4.02
291 292 1.928503 GCATGGCAATTTCATTCGGTG 59.071 47.619 0.00 0.00 0.00 4.94
292 293 1.826720 AGCATGGCAATTTCATTCGGT 59.173 42.857 0.00 0.00 0.00 4.69
293 294 2.159212 TGAGCATGGCAATTTCATTCGG 60.159 45.455 0.00 0.00 0.00 4.30
294 295 2.855963 GTGAGCATGGCAATTTCATTCG 59.144 45.455 0.00 0.00 0.00 3.34
295 296 3.852286 TGTGAGCATGGCAATTTCATTC 58.148 40.909 0.00 0.00 0.00 2.67
296 297 3.965379 TGTGAGCATGGCAATTTCATT 57.035 38.095 0.00 0.00 0.00 2.57
297 298 3.007074 TGTTGTGAGCATGGCAATTTCAT 59.993 39.130 0.00 0.00 0.00 2.57
298 299 2.364647 TGTTGTGAGCATGGCAATTTCA 59.635 40.909 0.00 0.00 0.00 2.69
299 300 3.029320 TGTTGTGAGCATGGCAATTTC 57.971 42.857 0.00 0.00 0.00 2.17
300 301 3.181463 ACTTGTTGTGAGCATGGCAATTT 60.181 39.130 0.00 0.00 0.00 1.82
301 302 2.366266 ACTTGTTGTGAGCATGGCAATT 59.634 40.909 0.00 0.00 0.00 2.32
302 303 1.965643 ACTTGTTGTGAGCATGGCAAT 59.034 42.857 0.00 0.00 0.00 3.56
303 304 1.401761 ACTTGTTGTGAGCATGGCAA 58.598 45.000 0.00 0.00 0.00 4.52
304 305 1.401761 AACTTGTTGTGAGCATGGCA 58.598 45.000 0.00 0.00 0.00 4.92
305 306 3.855689 ATAACTTGTTGTGAGCATGGC 57.144 42.857 0.00 0.00 0.00 4.40
306 307 4.386652 GCAAATAACTTGTTGTGAGCATGG 59.613 41.667 0.00 0.00 37.36 3.66
307 308 4.386652 GGCAAATAACTTGTTGTGAGCATG 59.613 41.667 0.00 0.00 37.36 4.06
308 309 4.039004 TGGCAAATAACTTGTTGTGAGCAT 59.961 37.500 0.00 0.00 37.36 3.79
309 310 3.382865 TGGCAAATAACTTGTTGTGAGCA 59.617 39.130 0.00 0.00 37.36 4.26
310 311 3.976169 TGGCAAATAACTTGTTGTGAGC 58.024 40.909 0.00 0.00 37.36 4.26
311 312 5.771469 TCATGGCAAATAACTTGTTGTGAG 58.229 37.500 0.00 0.00 37.36 3.51
312 313 5.534278 TCTCATGGCAAATAACTTGTTGTGA 59.466 36.000 0.00 0.00 37.36 3.58
313 314 5.771469 TCTCATGGCAAATAACTTGTTGTG 58.229 37.500 0.00 0.00 37.36 3.33
314 315 6.403866 TTCTCATGGCAAATAACTTGTTGT 57.596 33.333 0.00 0.00 37.36 3.32
315 316 7.894376 ATTTCTCATGGCAAATAACTTGTTG 57.106 32.000 0.00 0.00 37.36 3.33
316 317 8.806146 AGTATTTCTCATGGCAAATAACTTGTT 58.194 29.630 10.04 0.00 37.36 2.83
317 318 8.353423 AGTATTTCTCATGGCAAATAACTTGT 57.647 30.769 10.04 0.00 37.36 3.16
318 319 7.917505 GGAGTATTTCTCATGGCAAATAACTTG 59.082 37.037 10.04 0.00 44.40 3.16
319 320 7.068716 GGGAGTATTTCTCATGGCAAATAACTT 59.931 37.037 10.04 2.82 44.40 2.66
320 321 6.547510 GGGAGTATTTCTCATGGCAAATAACT 59.452 38.462 10.04 9.72 44.40 2.24
321 322 6.547510 AGGGAGTATTTCTCATGGCAAATAAC 59.452 38.462 10.04 8.27 44.40 1.89
322 323 6.672593 AGGGAGTATTTCTCATGGCAAATAA 58.327 36.000 10.04 0.00 44.40 1.40
323 324 6.101734 AGAGGGAGTATTTCTCATGGCAAATA 59.898 38.462 0.00 0.00 44.40 1.40
324 325 5.103771 AGAGGGAGTATTTCTCATGGCAAAT 60.104 40.000 0.00 0.57 44.40 2.32
325 326 4.228210 AGAGGGAGTATTTCTCATGGCAAA 59.772 41.667 0.00 0.00 44.40 3.68
326 327 3.782523 AGAGGGAGTATTTCTCATGGCAA 59.217 43.478 0.00 0.00 44.40 4.52
327 328 3.135348 CAGAGGGAGTATTTCTCATGGCA 59.865 47.826 0.00 0.00 44.40 4.92
328 329 3.135530 ACAGAGGGAGTATTTCTCATGGC 59.864 47.826 0.00 0.00 44.40 4.40
329 330 4.653341 AGACAGAGGGAGTATTTCTCATGG 59.347 45.833 0.00 0.00 44.40 3.66
330 331 5.362143 TGAGACAGAGGGAGTATTTCTCATG 59.638 44.000 0.00 0.00 44.40 3.07
331 332 5.523588 TGAGACAGAGGGAGTATTTCTCAT 58.476 41.667 0.00 0.00 44.40 2.90
332 333 4.935578 TGAGACAGAGGGAGTATTTCTCA 58.064 43.478 0.00 0.00 44.40 3.27
333 334 5.923733 TTGAGACAGAGGGAGTATTTCTC 57.076 43.478 0.00 0.00 42.07 2.87
334 335 6.882768 ATTTGAGACAGAGGGAGTATTTCT 57.117 37.500 0.00 0.00 0.00 2.52
338 339 9.661954 TCTTATAATTTGAGACAGAGGGAGTAT 57.338 33.333 0.00 0.00 0.00 2.12
339 340 9.488762 TTCTTATAATTTGAGACAGAGGGAGTA 57.511 33.333 0.00 0.00 0.00 2.59
340 341 7.979786 TCTTATAATTTGAGACAGAGGGAGT 57.020 36.000 0.00 0.00 0.00 3.85
341 342 7.436673 CGTTCTTATAATTTGAGACAGAGGGAG 59.563 40.741 0.00 0.00 0.00 4.30
342 343 7.093465 ACGTTCTTATAATTTGAGACAGAGGGA 60.093 37.037 0.00 0.00 0.00 4.20
343 344 7.042335 ACGTTCTTATAATTTGAGACAGAGGG 58.958 38.462 0.00 0.00 0.00 4.30
344 345 8.480643 AACGTTCTTATAATTTGAGACAGAGG 57.519 34.615 0.00 0.00 0.00 3.69
361 362 9.925268 CATTAGTGTAGTGTTAAAAACGTTCTT 57.075 29.630 0.00 0.00 0.00 2.52
362 363 9.101655 ACATTAGTGTAGTGTTAAAAACGTTCT 57.898 29.630 0.00 0.00 36.63 3.01
363 364 9.361712 GACATTAGTGTAGTGTTAAAAACGTTC 57.638 33.333 0.00 0.00 39.09 3.95
364 365 8.881743 TGACATTAGTGTAGTGTTAAAAACGTT 58.118 29.630 0.00 0.00 39.09 3.99
365 366 8.422973 TGACATTAGTGTAGTGTTAAAAACGT 57.577 30.769 0.00 0.00 39.09 3.99
366 367 9.705471 TTTGACATTAGTGTAGTGTTAAAAACG 57.295 29.630 0.00 0.00 39.09 3.60
370 371 9.705471 CGTTTTTGACATTAGTGTAGTGTTAAA 57.295 29.630 0.00 0.00 39.09 1.52
371 372 8.881743 ACGTTTTTGACATTAGTGTAGTGTTAA 58.118 29.630 0.00 0.00 39.09 2.01
372 373 8.422973 ACGTTTTTGACATTAGTGTAGTGTTA 57.577 30.769 0.00 0.00 39.09 2.41
373 374 7.311364 ACGTTTTTGACATTAGTGTAGTGTT 57.689 32.000 0.00 0.00 39.09 3.32
374 375 6.913873 ACGTTTTTGACATTAGTGTAGTGT 57.086 33.333 0.00 0.00 39.09 3.55
375 376 8.609478 AAAACGTTTTTGACATTAGTGTAGTG 57.391 30.769 20.26 0.00 39.09 2.74
391 392 9.777575 CTCCGTTCCATAATATAAAAACGTTTT 57.222 29.630 20.26 20.26 38.17 2.43
392 393 8.400186 CCTCCGTTCCATAATATAAAAACGTTT 58.600 33.333 7.96 7.96 38.17 3.60
393 394 7.012610 CCCTCCGTTCCATAATATAAAAACGTT 59.987 37.037 0.00 0.00 38.17 3.99
394 395 6.484308 CCCTCCGTTCCATAATATAAAAACGT 59.516 38.462 0.00 0.00 38.17 3.99
395 396 6.707161 TCCCTCCGTTCCATAATATAAAAACG 59.293 38.462 0.00 0.00 39.20 3.60
396 397 7.718314 ACTCCCTCCGTTCCATAATATAAAAAC 59.282 37.037 0.00 0.00 0.00 2.43
397 398 7.808218 ACTCCCTCCGTTCCATAATATAAAAA 58.192 34.615 0.00 0.00 0.00 1.94
398 399 7.383156 ACTCCCTCCGTTCCATAATATAAAA 57.617 36.000 0.00 0.00 0.00 1.52
399 400 8.674925 ATACTCCCTCCGTTCCATAATATAAA 57.325 34.615 0.00 0.00 0.00 1.40
400 401 8.674925 AATACTCCCTCCGTTCCATAATATAA 57.325 34.615 0.00 0.00 0.00 0.98
401 402 8.537016 CAAATACTCCCTCCGTTCCATAATATA 58.463 37.037 0.00 0.00 0.00 0.86
402 403 7.236847 TCAAATACTCCCTCCGTTCCATAATAT 59.763 37.037 0.00 0.00 0.00 1.28
403 404 6.555738 TCAAATACTCCCTCCGTTCCATAATA 59.444 38.462 0.00 0.00 0.00 0.98
404 405 5.368523 TCAAATACTCCCTCCGTTCCATAAT 59.631 40.000 0.00 0.00 0.00 1.28
405 406 4.717778 TCAAATACTCCCTCCGTTCCATAA 59.282 41.667 0.00 0.00 0.00 1.90
406 407 4.291792 TCAAATACTCCCTCCGTTCCATA 58.708 43.478 0.00 0.00 0.00 2.74
407 408 3.112263 TCAAATACTCCCTCCGTTCCAT 58.888 45.455 0.00 0.00 0.00 3.41
408 409 2.542550 TCAAATACTCCCTCCGTTCCA 58.457 47.619 0.00 0.00 0.00 3.53
409 410 3.840124 ATCAAATACTCCCTCCGTTCC 57.160 47.619 0.00 0.00 0.00 3.62
410 411 4.941873 ACAAATCAAATACTCCCTCCGTTC 59.058 41.667 0.00 0.00 0.00 3.95
411 412 4.918588 ACAAATCAAATACTCCCTCCGTT 58.081 39.130 0.00 0.00 0.00 4.44
412 413 4.019681 TGACAAATCAAATACTCCCTCCGT 60.020 41.667 0.00 0.00 0.00 4.69
413 414 4.513442 TGACAAATCAAATACTCCCTCCG 58.487 43.478 0.00 0.00 0.00 4.63
414 415 5.532779 GGATGACAAATCAAATACTCCCTCC 59.467 44.000 0.00 0.00 38.69 4.30
415 416 6.360618 AGGATGACAAATCAAATACTCCCTC 58.639 40.000 0.00 0.00 38.69 4.30
416 417 6.332976 AGGATGACAAATCAAATACTCCCT 57.667 37.500 0.00 0.00 38.69 4.20
417 418 8.519799 TTAAGGATGACAAATCAAATACTCCC 57.480 34.615 0.00 0.00 38.69 4.30
452 453 8.519526 TGGTTACGAAAATGCTAAAAATCTGAT 58.480 29.630 0.00 0.00 0.00 2.90
465 466 3.919216 TGCCCATTTGGTTACGAAAATG 58.081 40.909 12.34 12.34 41.41 2.32
473 474 0.116143 AAGGCCTGCCCATTTGGTTA 59.884 50.000 5.69 0.00 36.58 2.85
489 490 0.320946 TTACGTGGAAAGGCGGAAGG 60.321 55.000 0.00 0.00 0.00 3.46
788 816 3.707189 GGGGGAGGGAGAGGGGAA 61.707 72.222 0.00 0.00 0.00 3.97
790 818 4.179599 GAGGGGGAGGGAGAGGGG 62.180 77.778 0.00 0.00 0.00 4.79
1177 1577 3.237741 GCGGATGGGGGAGAGAGG 61.238 72.222 0.00 0.00 0.00 3.69
1179 1579 0.105194 TAATGCGGATGGGGGAGAGA 60.105 55.000 0.00 0.00 0.00 3.10
1223 1627 1.003839 AGCCGAGTCAAAATCGCCA 60.004 52.632 0.00 0.00 38.84 5.69
1404 1813 1.373748 TAGAACGCACGCACCTTCC 60.374 57.895 0.00 0.00 0.00 3.46
1442 1851 2.108970 GTAGTGAAGTGACCCCCTAGG 58.891 57.143 0.06 0.06 43.78 3.02
1443 1852 3.103080 AGTAGTGAAGTGACCCCCTAG 57.897 52.381 0.00 0.00 0.00 3.02
1445 1854 2.417719 AAGTAGTGAAGTGACCCCCT 57.582 50.000 0.00 0.00 0.00 4.79
1446 1855 4.628963 TTTAAGTAGTGAAGTGACCCCC 57.371 45.455 0.00 0.00 0.00 5.40
1447 1856 4.450080 CGTTTTAAGTAGTGAAGTGACCCC 59.550 45.833 0.00 0.00 0.00 4.95
1448 1857 5.050567 CACGTTTTAAGTAGTGAAGTGACCC 60.051 44.000 0.00 0.00 36.79 4.46
1459 1871 5.840940 AGCAAGCTACACGTTTTAAGTAG 57.159 39.130 5.81 5.81 38.54 2.57
1490 1903 4.405116 AAAGCCAAGCATTCTTGTTTCA 57.595 36.364 4.38 0.00 46.33 2.69
1572 1986 6.405065 GCATTCTTGAGCTGGAATCATTTGTA 60.405 38.462 0.00 0.00 30.81 2.41
1597 2011 3.004210 CAGAGATGTCATGGTCTACCTCG 59.996 52.174 0.02 0.00 36.82 4.63
1605 2019 5.337894 CCTTTACTCACAGAGATGTCATGGT 60.338 44.000 0.31 0.00 33.32 3.55
1612 2026 4.629200 GCAGAACCTTTACTCACAGAGATG 59.371 45.833 0.31 0.00 33.32 2.90
1613 2027 4.619394 CGCAGAACCTTTACTCACAGAGAT 60.619 45.833 0.31 0.00 33.32 2.75
1614 2028 3.305403 CGCAGAACCTTTACTCACAGAGA 60.305 47.826 0.31 0.00 33.32 3.10
1623 2037 1.347320 CGGACTCGCAGAACCTTTAC 58.653 55.000 0.00 0.00 34.09 2.01
1635 2049 0.312416 CTCCATAGCTTCCGGACTCG 59.688 60.000 1.83 0.00 0.00 4.18
1639 2053 0.556258 TCTCCTCCATAGCTTCCGGA 59.444 55.000 0.00 0.00 0.00 5.14
1696 2110 1.922447 ACAACATGGGCTCCTTCCATA 59.078 47.619 0.00 0.00 42.63 2.74
1764 2178 0.798776 GTTGGTGACAGAGCCATTCG 59.201 55.000 0.00 0.00 44.54 3.34
1812 2226 3.448660 AGTGATCGATCCACTCACAATCA 59.551 43.478 22.31 0.00 40.55 2.57
1813 2227 3.801050 CAGTGATCGATCCACTCACAATC 59.199 47.826 22.31 0.00 42.44 2.67
1814 2228 3.448660 TCAGTGATCGATCCACTCACAAT 59.551 43.478 22.31 0.00 42.44 2.71
1815 2229 2.825532 TCAGTGATCGATCCACTCACAA 59.174 45.455 22.31 5.23 42.44 3.33
1816 2230 2.424956 CTCAGTGATCGATCCACTCACA 59.575 50.000 22.31 10.34 42.44 3.58
1817 2231 2.685388 TCTCAGTGATCGATCCACTCAC 59.315 50.000 22.31 14.74 42.44 3.51
1899 2313 2.408050 CACTCACAAGAGAAACTCCCG 58.592 52.381 0.00 0.00 44.98 5.14
1927 2341 2.500098 ACTTATAACTTCTGGCTCGGCA 59.500 45.455 0.00 0.00 0.00 5.69
2025 2439 0.532417 GGCTACATCTGCTGCCTCAG 60.532 60.000 0.00 0.00 41.92 3.35
2026 2440 1.266867 TGGCTACATCTGCTGCCTCA 61.267 55.000 12.95 0.00 45.11 3.86
2027 2441 0.813210 GTGGCTACATCTGCTGCCTC 60.813 60.000 12.95 7.58 45.11 4.70
2028 2442 1.222936 GTGGCTACATCTGCTGCCT 59.777 57.895 12.95 0.00 45.11 4.75
2029 2443 1.821332 GGTGGCTACATCTGCTGCC 60.821 63.158 1.52 6.98 45.10 4.85
2030 2444 0.813210 GAGGTGGCTACATCTGCTGC 60.813 60.000 7.69 0.00 38.44 5.25
2031 2445 0.538584 TGAGGTGGCTACATCTGCTG 59.461 55.000 15.96 0.00 38.44 4.41
2032 2446 1.415659 GATGAGGTGGCTACATCTGCT 59.584 52.381 15.96 1.00 38.44 4.24
2033 2447 1.139654 TGATGAGGTGGCTACATCTGC 59.860 52.381 15.96 8.25 38.44 4.26
2034 2448 2.224233 CCTGATGAGGTGGCTACATCTG 60.224 54.545 15.96 7.55 38.44 2.90
2035 2449 2.045524 CCTGATGAGGTGGCTACATCT 58.954 52.381 15.96 1.73 41.88 2.90
2036 2450 2.042464 TCCTGATGAGGTGGCTACATC 58.958 52.381 8.03 8.03 40.76 3.06
2037 2451 2.180946 TCCTGATGAGGTGGCTACAT 57.819 50.000 1.52 0.00 40.76 2.29
2038 2452 1.951209 TTCCTGATGAGGTGGCTACA 58.049 50.000 1.52 0.00 40.76 2.74
2039 2453 3.567478 AATTCCTGATGAGGTGGCTAC 57.433 47.619 0.00 0.00 40.76 3.58
2040 2454 4.037222 TGTAATTCCTGATGAGGTGGCTA 58.963 43.478 0.00 0.00 40.76 3.93
2041 2455 2.846206 TGTAATTCCTGATGAGGTGGCT 59.154 45.455 0.00 0.00 40.76 4.75
2042 2456 3.281727 TGTAATTCCTGATGAGGTGGC 57.718 47.619 0.00 0.00 40.76 5.01
2043 2457 3.947834 GGTTGTAATTCCTGATGAGGTGG 59.052 47.826 0.00 0.00 40.76 4.61
2044 2458 3.623060 CGGTTGTAATTCCTGATGAGGTG 59.377 47.826 0.00 0.00 40.76 4.00
2045 2459 3.370527 CCGGTTGTAATTCCTGATGAGGT 60.371 47.826 0.00 0.00 40.76 3.85
2046 2460 3.206150 CCGGTTGTAATTCCTGATGAGG 58.794 50.000 0.00 0.00 41.39 3.86
2047 2461 3.206150 CCCGGTTGTAATTCCTGATGAG 58.794 50.000 0.00 0.00 0.00 2.90
2048 2462 2.092646 CCCCGGTTGTAATTCCTGATGA 60.093 50.000 0.00 0.00 0.00 2.92
2049 2463 2.297701 CCCCGGTTGTAATTCCTGATG 58.702 52.381 0.00 0.00 0.00 3.07
2050 2464 1.409661 GCCCCGGTTGTAATTCCTGAT 60.410 52.381 0.00 0.00 0.00 2.90
2051 2465 0.034863 GCCCCGGTTGTAATTCCTGA 60.035 55.000 0.00 0.00 0.00 3.86
2052 2466 0.034477 AGCCCCGGTTGTAATTCCTG 60.034 55.000 0.00 0.00 0.00 3.86
2053 2467 0.255033 GAGCCCCGGTTGTAATTCCT 59.745 55.000 0.00 0.00 0.00 3.36
2054 2468 0.750546 GGAGCCCCGGTTGTAATTCC 60.751 60.000 0.00 0.00 0.00 3.01
2055 2469 0.750546 GGGAGCCCCGGTTGTAATTC 60.751 60.000 0.00 0.00 32.13 2.17
2056 2470 1.305287 GGGAGCCCCGGTTGTAATT 59.695 57.895 0.00 0.00 32.13 1.40
2057 2471 2.686572 GGGGAGCCCCGGTTGTAAT 61.687 63.158 9.24 0.00 46.66 1.89
2058 2472 3.332385 GGGGAGCCCCGGTTGTAA 61.332 66.667 9.24 0.00 46.66 2.41
2067 2481 0.469144 TTTGTTGTCAAGGGGAGCCC 60.469 55.000 0.00 0.00 45.90 5.19
2068 2482 0.961753 CTTTGTTGTCAAGGGGAGCC 59.038 55.000 0.00 0.00 34.88 4.70
2069 2483 0.961753 CCTTTGTTGTCAAGGGGAGC 59.038 55.000 1.93 0.00 43.99 4.70
2070 2484 0.961753 GCCTTTGTTGTCAAGGGGAG 59.038 55.000 10.26 0.00 46.57 4.30
2071 2485 0.821711 CGCCTTTGTTGTCAAGGGGA 60.822 55.000 9.57 0.00 46.57 4.81
2072 2486 1.106944 ACGCCTTTGTTGTCAAGGGG 61.107 55.000 12.80 12.80 46.57 4.79
2074 2488 1.838913 CAACGCCTTTGTTGTCAAGG 58.161 50.000 0.00 0.00 43.28 3.61
2081 2495 0.598065 GGATCTGCAACGCCTTTGTT 59.402 50.000 0.00 0.00 37.54 2.83
2082 2496 0.537143 TGGATCTGCAACGCCTTTGT 60.537 50.000 0.00 0.00 37.54 2.83
2083 2497 0.169672 CTGGATCTGCAACGCCTTTG 59.830 55.000 0.00 0.00 38.37 2.77
2084 2498 0.036732 TCTGGATCTGCAACGCCTTT 59.963 50.000 0.00 0.00 0.00 3.11
2085 2499 0.254178 ATCTGGATCTGCAACGCCTT 59.746 50.000 0.00 0.00 0.00 4.35
2086 2500 1.123077 TATCTGGATCTGCAACGCCT 58.877 50.000 0.00 0.00 0.00 5.52
2087 2501 1.202580 AGTATCTGGATCTGCAACGCC 60.203 52.381 0.00 0.00 0.00 5.68
2088 2502 1.863454 CAGTATCTGGATCTGCAACGC 59.137 52.381 0.00 0.00 0.00 4.84
2089 2503 3.443099 TCAGTATCTGGATCTGCAACG 57.557 47.619 0.00 0.00 31.51 4.10
2090 2504 5.008415 CCATTTCAGTATCTGGATCTGCAAC 59.992 44.000 0.00 0.00 31.51 4.17
2091 2505 5.128205 CCATTTCAGTATCTGGATCTGCAA 58.872 41.667 0.00 0.00 31.51 4.08
2092 2506 4.445305 CCCATTTCAGTATCTGGATCTGCA 60.445 45.833 0.00 0.00 31.51 4.41
2093 2507 4.070716 CCCATTTCAGTATCTGGATCTGC 58.929 47.826 0.00 0.00 31.51 4.26
2094 2508 5.549347 CTCCCATTTCAGTATCTGGATCTG 58.451 45.833 0.00 0.00 31.51 2.90
2095 2509 4.041444 GCTCCCATTTCAGTATCTGGATCT 59.959 45.833 0.00 0.00 31.51 2.75
2096 2510 4.041444 AGCTCCCATTTCAGTATCTGGATC 59.959 45.833 0.00 0.00 31.51 3.36
2097 2511 3.979347 AGCTCCCATTTCAGTATCTGGAT 59.021 43.478 0.00 0.00 31.51 3.41
2098 2512 3.387962 AGCTCCCATTTCAGTATCTGGA 58.612 45.455 0.00 0.00 31.51 3.86
2099 2513 3.495806 GGAGCTCCCATTTCAGTATCTGG 60.496 52.174 23.19 0.00 34.14 3.86
2100 2514 3.390639 AGGAGCTCCCATTTCAGTATCTG 59.609 47.826 29.54 0.00 37.41 2.90
2101 2515 3.663198 AGGAGCTCCCATTTCAGTATCT 58.337 45.455 29.54 2.46 37.41 1.98
2102 2516 4.262678 GGTAGGAGCTCCCATTTCAGTATC 60.263 50.000 29.54 8.97 37.41 2.24
2103 2517 3.648545 GGTAGGAGCTCCCATTTCAGTAT 59.351 47.826 29.54 9.11 37.41 2.12
2104 2518 3.039011 GGTAGGAGCTCCCATTTCAGTA 58.961 50.000 29.54 9.57 37.41 2.74
2105 2519 1.840635 GGTAGGAGCTCCCATTTCAGT 59.159 52.381 29.54 10.66 37.41 3.41
2106 2520 1.839994 TGGTAGGAGCTCCCATTTCAG 59.160 52.381 29.54 0.00 37.41 3.02
2107 2521 1.965414 TGGTAGGAGCTCCCATTTCA 58.035 50.000 29.54 16.93 37.41 2.69
2108 2522 2.224646 GGATGGTAGGAGCTCCCATTTC 60.225 54.545 29.54 18.36 39.06 2.17
2109 2523 1.777272 GGATGGTAGGAGCTCCCATTT 59.223 52.381 29.54 13.43 39.06 2.32
2110 2524 1.345422 TGGATGGTAGGAGCTCCCATT 60.345 52.381 29.54 13.83 39.06 3.16
2111 2525 0.268869 TGGATGGTAGGAGCTCCCAT 59.731 55.000 29.54 23.85 41.61 4.00
2112 2526 0.268869 ATGGATGGTAGGAGCTCCCA 59.731 55.000 29.54 20.14 37.41 4.37
2113 2527 1.439543 AATGGATGGTAGGAGCTCCC 58.560 55.000 29.54 14.82 36.42 4.30
2114 2528 4.534103 AGATAAATGGATGGTAGGAGCTCC 59.466 45.833 26.22 26.22 0.00 4.70
2115 2529 5.486526 CAGATAAATGGATGGTAGGAGCTC 58.513 45.833 4.71 4.71 0.00 4.09
2116 2530 4.263243 GCAGATAAATGGATGGTAGGAGCT 60.263 45.833 0.00 0.00 0.00 4.09
2117 2531 4.006319 GCAGATAAATGGATGGTAGGAGC 58.994 47.826 0.00 0.00 0.00 4.70
2118 2532 5.495926 AGCAGATAAATGGATGGTAGGAG 57.504 43.478 0.00 0.00 0.00 3.69
2119 2533 5.912149 AAGCAGATAAATGGATGGTAGGA 57.088 39.130 0.00 0.00 0.00 2.94
2120 2534 7.397221 TCATAAGCAGATAAATGGATGGTAGG 58.603 38.462 0.00 0.00 0.00 3.18
2121 2535 8.853077 TTCATAAGCAGATAAATGGATGGTAG 57.147 34.615 0.00 0.00 0.00 3.18
2122 2536 8.853077 CTTCATAAGCAGATAAATGGATGGTA 57.147 34.615 0.00 0.00 0.00 3.25
2123 2537 7.756395 CTTCATAAGCAGATAAATGGATGGT 57.244 36.000 0.00 0.00 0.00 3.55
2139 2553 2.097142 GCCTCAGTTGCAGCTTCATAAG 59.903 50.000 0.00 0.00 0.00 1.73
2140 2554 2.086869 GCCTCAGTTGCAGCTTCATAA 58.913 47.619 0.00 0.00 0.00 1.90
2141 2555 1.003464 TGCCTCAGTTGCAGCTTCATA 59.997 47.619 0.00 0.00 34.05 2.15
2142 2556 0.251033 TGCCTCAGTTGCAGCTTCAT 60.251 50.000 0.00 0.00 34.05 2.57
2143 2557 1.148949 TGCCTCAGTTGCAGCTTCA 59.851 52.632 0.00 0.00 34.05 3.02
2144 2558 4.069869 TGCCTCAGTTGCAGCTTC 57.930 55.556 0.00 0.00 34.05 3.86
2149 2563 0.958876 CATCTGCTGCCTCAGTTGCA 60.959 55.000 0.00 0.00 35.63 4.08
2150 2564 0.959372 ACATCTGCTGCCTCAGTTGC 60.959 55.000 11.17 0.00 37.32 4.17
2151 2565 2.277969 CTACATCTGCTGCCTCAGTTG 58.722 52.381 0.00 10.18 38.86 3.16
2152 2566 1.406614 GCTACATCTGCTGCCTCAGTT 60.407 52.381 0.00 0.00 35.63 3.16
2153 2567 0.177604 GCTACATCTGCTGCCTCAGT 59.822 55.000 0.00 0.00 35.63 3.41
2176 2590 1.265905 CCAGTTGTAACTTCCAACGCC 59.734 52.381 0.00 0.00 45.31 5.68
2181 2724 2.038557 GGAGCTCCAGTTGTAACTTCCA 59.961 50.000 28.43 0.00 37.08 3.53
2237 2780 0.678048 ACAGGAGAAGCGCCCATTTC 60.678 55.000 2.29 0.36 0.00 2.17
2290 2833 2.084546 GGTGTGGTGACTAAATCTGCC 58.915 52.381 0.00 0.00 0.00 4.85
2434 2977 4.127171 TGTCAAAGGAAGCTACAGTTGTC 58.873 43.478 0.00 0.00 0.00 3.18
2471 3014 6.645790 AGCTTCCATTTTAATATCTGGCTG 57.354 37.500 0.00 0.00 0.00 4.85
2509 3052 1.624336 AAGCCATTTCAGCAGCAGAA 58.376 45.000 0.00 0.00 0.00 3.02
2526 3069 5.299279 ACAAGGGAACATGAGTGTACAAAAG 59.701 40.000 0.00 0.00 37.67 2.27
2540 3083 3.476552 CAGCTTCAGTAACAAGGGAACA 58.523 45.455 0.00 0.00 0.00 3.18
2686 3229 4.327680 GAGCTCCAGTTGTAACTTCCAAT 58.672 43.478 0.87 0.00 37.08 3.16
2737 3280 9.056005 GCAAAAGAAGGTCCAATTTTAATTTCT 57.944 29.630 0.00 0.00 0.00 2.52
2911 3454 2.163815 ACGACCTGTATCTTCTGGTTCG 59.836 50.000 0.00 0.00 39.21 3.95
2932 3475 8.537016 TCGGTAGATTCATTTAAAAGAGAAGGA 58.463 33.333 0.00 0.00 0.00 3.36
2977 3520 4.122776 CAGCATCGGTAGCAATAGAAACT 58.877 43.478 0.00 0.00 0.00 2.66
3041 3590 3.442100 GCTCATTTAAAGCAGCATCACC 58.558 45.455 13.74 0.00 39.61 4.02
3159 3708 4.927267 TTCACATAACCAACATCTCCCT 57.073 40.909 0.00 0.00 0.00 4.20
3254 3803 1.403249 GCCTGATGCACATGAAACACC 60.403 52.381 0.00 0.00 40.77 4.16
3308 3857 6.401394 GCCTAGCATAACATATGACATCAGA 58.599 40.000 10.38 0.00 0.00 3.27
3466 4015 0.390340 TGTCTGCAGATTCAGCGGTC 60.390 55.000 21.47 3.84 39.38 4.79
3548 4097 2.095853 CACATTCAAATCGTCCCTTCCG 59.904 50.000 0.00 0.00 0.00 4.30
3665 4214 3.549019 CGTCTCAGATACTTGTGGGATCG 60.549 52.174 0.00 0.00 26.81 3.69
3730 4279 1.686115 GCCATACTGCAACCTTCCCAT 60.686 52.381 0.00 0.00 0.00 4.00
3887 4436 1.740025 AGCAAGATTTTACCTCTGCGC 59.260 47.619 0.00 0.00 0.00 6.09
3988 4537 3.565482 TGTCAGAACTCAGAACAATTGGC 59.435 43.478 10.83 1.25 0.00 4.52
4092 4641 6.568844 GCTTTTGGAAATGTACACCGATGTTA 60.569 38.462 0.00 0.00 40.48 2.41
4133 4682 5.007682 ACCACTGTAAGAAACAAACACTGT 58.992 37.500 0.00 0.00 37.74 3.55
4206 4755 9.586435 CCTGAAACAGAATAAAAACAACTTCTT 57.414 29.630 0.00 0.00 32.44 2.52
4207 4756 8.966868 TCCTGAAACAGAATAAAAACAACTTCT 58.033 29.630 0.00 0.00 32.44 2.85
4208 4757 9.750125 ATCCTGAAACAGAATAAAAACAACTTC 57.250 29.630 0.00 0.00 32.44 3.01
4316 4868 6.015603 ACCCTTCTAGTATAGGTGAATAACGC 60.016 42.308 7.29 0.00 39.78 4.84
4317 4869 7.521871 ACCCTTCTAGTATAGGTGAATAACG 57.478 40.000 7.29 0.00 39.78 3.18
4382 4942 7.739498 TGAAACAGAGGGAGTACAAAAATAC 57.261 36.000 0.00 0.00 0.00 1.89
4790 5572 4.084013 GCACCAATATAGTACATGCGAACC 60.084 45.833 0.00 0.00 0.00 3.62
4794 5576 7.258441 ACTATAGCACCAATATAGTACATGCG 58.742 38.462 0.00 0.00 42.12 4.73
5167 5967 3.557577 TGATTGAACAACTTCATGGCG 57.442 42.857 0.00 0.00 36.26 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.