Multiple sequence alignment - TraesCS4B01G315400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G315400 chr4B 100.000 4940 0 0 1 4940 604876387 604881326 0.000000e+00 9123.0
1 TraesCS4B01G315400 chr4D 93.001 1686 89 12 1908 3574 478265977 478267652 0.000000e+00 2433.0
2 TraesCS4B01G315400 chr4D 95.589 1315 48 3 3636 4940 478267654 478268968 0.000000e+00 2098.0
3 TraesCS4B01G315400 chr4D 85.166 1537 134 50 117 1601 478264404 478265898 0.000000e+00 1489.0
4 TraesCS4B01G315400 chr4D 84.726 838 83 26 3 826 478262212 478263018 0.000000e+00 797.0
5 TraesCS4B01G315400 chr4D 84.626 722 83 17 117 826 478263703 478264408 0.000000e+00 693.0
6 TraesCS4B01G315400 chr4D 83.518 722 79 23 117 826 478263014 478263707 5.390000e-179 638.0
7 TraesCS4B01G315400 chr4D 76.395 233 41 9 4320 4548 478488221 478488443 4.040000e-21 113.0
8 TraesCS4B01G315400 chr4A 89.885 1394 91 36 3189 4548 684967622 684968999 0.000000e+00 1748.0
9 TraesCS4B01G315400 chr4A 86.906 1283 130 23 1667 2925 684966057 684967325 0.000000e+00 1404.0
10 TraesCS4B01G315400 chr4A 85.647 634 42 24 799 1401 684964990 684965605 5.430000e-174 621.0
11 TraesCS4B01G315400 chr4A 88.177 406 37 3 4544 4940 28561361 28560958 1.610000e-129 473.0
12 TraesCS4B01G315400 chr4A 82.500 80 11 3 1502 1578 684965703 684965782 3.190000e-07 67.6
13 TraesCS4B01G315400 chr1D 88.294 504 40 5 931 1429 416298340 416297851 1.980000e-163 586.0
14 TraesCS4B01G315400 chr1D 90.625 96 5 2 1459 1552 416297850 416297757 1.870000e-24 124.0
15 TraesCS4B01G315400 chr3B 89.901 406 31 3 4544 4940 672534145 672533741 9.480000e-142 514.0
16 TraesCS4B01G315400 chr3B 88.424 406 38 2 4544 4940 814390368 814389963 9.620000e-132 481.0
17 TraesCS4B01G315400 chr3B 87.438 406 42 2 4544 4940 505293632 505293227 4.510000e-125 459.0
18 TraesCS4B01G315400 chr2B 89.630 405 33 5 4544 4940 138534788 138534385 1.590000e-139 507.0
19 TraesCS4B01G315400 chr2B 88.670 406 37 2 4544 4940 760109834 760110239 2.070000e-133 486.0
20 TraesCS4B01G315400 chr2B 87.097 124 12 3 216 336 742653484 742653606 2.400000e-28 137.0
21 TraesCS4B01G315400 chr2B 87.013 77 4 6 3564 3638 644519118 644519046 1.140000e-11 82.4
22 TraesCS4B01G315400 chr1B 85.857 502 37 14 931 1425 680981994 680982468 2.050000e-138 503.0
23 TraesCS4B01G315400 chr1B 87.037 108 10 2 1459 1564 680982473 680982578 8.690000e-23 119.0
24 TraesCS4B01G315400 chr5B 89.163 406 35 2 4544 4940 103331956 103332361 9.550000e-137 497.0
25 TraesCS4B01G315400 chr2D 89.163 406 35 2 4544 4940 82667143 82666738 9.550000e-137 497.0
26 TraesCS4B01G315400 chr2D 86.992 123 15 1 216 337 55750282 55750404 2.400000e-28 137.0
27 TraesCS4B01G315400 chr2D 86.400 125 16 1 217 340 13699008 13699132 8.630000e-28 135.0
28 TraesCS4B01G315400 chr2D 95.556 45 1 1 3600 3644 249894996 249894953 2.470000e-08 71.3
29 TraesCS4B01G315400 chr2D 95.556 45 1 1 3600 3644 296771623 296771580 2.470000e-08 71.3
30 TraesCS4B01G315400 chr7D 88.698 407 35 4 4544 4940 1727650 1727245 2.070000e-133 486.0
31 TraesCS4B01G315400 chr7D 90.612 245 14 2 4544 4779 156031274 156031518 2.870000e-82 316.0
32 TraesCS4B01G315400 chr7D 87.805 123 13 2 216 337 90709620 90709741 5.150000e-30 143.0
33 TraesCS4B01G315400 chr2A 87.931 406 40 2 4544 4940 419032364 419032769 2.080000e-128 470.0
34 TraesCS4B01G315400 chr2A 97.826 46 0 1 3601 3646 139859735 139859691 1.470000e-10 78.7
35 TraesCS4B01G315400 chr2A 97.826 46 0 1 3601 3646 632618639 632618595 1.470000e-10 78.7
36 TraesCS4B01G315400 chr2A 85.714 77 5 6 3564 3638 683558358 683558286 5.300000e-10 76.8
37 TraesCS4B01G315400 chr6A 84.234 444 39 19 931 1366 146495541 146495121 2.140000e-108 403.0
38 TraesCS4B01G315400 chr6A 85.816 141 12 4 1459 1597 146492365 146492231 5.150000e-30 143.0
39 TraesCS4B01G315400 chr1A 87.597 129 15 1 216 343 544640024 544639896 1.110000e-31 148.0
40 TraesCS4B01G315400 chr5A 95.652 46 1 1 3601 3646 180343778 180343822 6.860000e-09 73.1
41 TraesCS4B01G315400 chr5A 85.714 70 6 3 3573 3638 462150534 462150465 2.470000e-08 71.3
42 TraesCS4B01G315400 chr7A 83.562 73 8 4 3570 3638 648428176 648428248 1.150000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G315400 chr4B 604876387 604881326 4939 False 9123.00 9123 100.0000 1 4940 1 chr4B.!!$F1 4939
1 TraesCS4B01G315400 chr4D 478262212 478268968 6756 False 1358.00 2433 87.7710 3 4940 6 chr4D.!!$F2 4937
2 TraesCS4B01G315400 chr4A 684964990 684968999 4009 False 960.15 1748 86.2345 799 4548 4 chr4A.!!$F1 3749
3 TraesCS4B01G315400 chr1D 416297757 416298340 583 True 355.00 586 89.4595 931 1552 2 chr1D.!!$R1 621
4 TraesCS4B01G315400 chr1B 680981994 680982578 584 False 311.00 503 86.4470 931 1564 2 chr1B.!!$F1 633
5 TraesCS4B01G315400 chr6A 146492231 146495541 3310 True 273.00 403 85.0250 931 1597 2 chr6A.!!$R1 666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
282 976 0.174162 GATGGCGCAAAATGCTTCCT 59.826 50.0 10.83 0.0 42.25 3.36 F
1785 6839 0.036952 CAAGGCCTCACGTCACTGAT 60.037 55.0 5.23 0.0 0.00 2.90 F
2629 7702 0.531974 ATGTGGCCCACGCTATTACG 60.532 55.0 9.78 0.0 37.14 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2125 7186 0.032813 CCACCCTGCCCAATCTTGAT 60.033 55.0 0.00 0.00 0.00 2.57 R
3210 8362 0.534427 ATGACCGGCTGATCTGCATG 60.534 55.0 23.84 16.42 34.04 4.06 R
4052 9240 0.674581 CCCATTCACAGCTTCGCAGA 60.675 55.0 0.00 0.00 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.508840 CGGATGCCGCCCACTTTC 61.509 66.667 0.00 0.00 41.17 2.62
30 31 2.044946 GGATGCCGCCCACTTTCT 60.045 61.111 0.00 0.00 0.00 2.52
45 46 0.996762 TTTCTTGGGGGTGTGGTCCT 60.997 55.000 0.00 0.00 0.00 3.85
46 47 0.996762 TTCTTGGGGGTGTGGTCCTT 60.997 55.000 0.00 0.00 0.00 3.36
81 82 2.279069 CCGCTCGATATGGGCCTCT 61.279 63.158 4.53 0.00 0.00 3.69
83 84 1.294780 GCTCGATATGGGCCTCTGG 59.705 63.158 4.53 0.00 0.00 3.86
101 102 0.672401 GGCCGAAAGTCCATTGACGA 60.672 55.000 0.00 0.00 46.51 4.20
195 889 0.726827 ATTGTGTATTGCGCTGTCCG 59.273 50.000 9.73 0.00 40.75 4.79
196 890 0.601576 TTGTGTATTGCGCTGTCCGT 60.602 50.000 9.73 0.00 39.71 4.69
255 949 3.139077 GGTGTTGTCTCGGTTCATCTTT 58.861 45.455 0.00 0.00 0.00 2.52
256 950 3.058914 GGTGTTGTCTCGGTTCATCTTTG 60.059 47.826 0.00 0.00 0.00 2.77
259 953 3.953712 TGTCTCGGTTCATCTTTGCTA 57.046 42.857 0.00 0.00 0.00 3.49
273 967 3.056962 TCTTTGCTAAATGATGGCGCAAA 60.057 39.130 10.83 7.40 45.11 3.68
282 976 0.174162 GATGGCGCAAAATGCTTCCT 59.826 50.000 10.83 0.00 42.25 3.36
300 994 5.121768 GCTTCCTAACTTGCTAATCGTTTCA 59.878 40.000 0.00 0.00 0.00 2.69
301 995 6.348213 GCTTCCTAACTTGCTAATCGTTTCAA 60.348 38.462 0.00 0.00 0.00 2.69
308 1002 4.349663 TGCTAATCGTTTCAATTTCCCG 57.650 40.909 0.00 0.00 0.00 5.14
309 1003 3.105937 GCTAATCGTTTCAATTTCCCGC 58.894 45.455 0.00 0.00 0.00 6.13
332 1026 1.001406 CGGAGCTCTCAGTCAAGGTTT 59.999 52.381 14.64 0.00 0.00 3.27
333 1027 2.421619 GGAGCTCTCAGTCAAGGTTTG 58.578 52.381 14.64 0.00 0.00 2.93
339 1033 4.191544 CTCTCAGTCAAGGTTTGTGTTCA 58.808 43.478 0.00 0.00 0.00 3.18
342 1036 4.780815 TCAGTCAAGGTTTGTGTTCATCT 58.219 39.130 0.00 0.00 0.00 2.90
343 1037 4.816385 TCAGTCAAGGTTTGTGTTCATCTC 59.184 41.667 0.00 0.00 0.00 2.75
344 1038 4.023707 CAGTCAAGGTTTGTGTTCATCTCC 60.024 45.833 0.00 0.00 0.00 3.71
345 1039 4.137543 GTCAAGGTTTGTGTTCATCTCCT 58.862 43.478 0.00 0.00 0.00 3.69
346 1040 4.214332 GTCAAGGTTTGTGTTCATCTCCTC 59.786 45.833 0.00 0.00 0.00 3.71
348 1042 4.278975 AGGTTTGTGTTCATCTCCTCTC 57.721 45.455 0.00 0.00 0.00 3.20
349 1043 3.906846 AGGTTTGTGTTCATCTCCTCTCT 59.093 43.478 0.00 0.00 0.00 3.10
351 1045 4.020662 GGTTTGTGTTCATCTCCTCTCTCT 60.021 45.833 0.00 0.00 0.00 3.10
352 1046 4.797800 TTGTGTTCATCTCCTCTCTCTG 57.202 45.455 0.00 0.00 0.00 3.35
353 1047 3.095332 TGTGTTCATCTCCTCTCTCTGG 58.905 50.000 0.00 0.00 0.00 3.86
354 1048 3.245407 TGTGTTCATCTCCTCTCTCTGGA 60.245 47.826 0.00 0.00 0.00 3.86
377 1751 4.282703 ACTTGCATTGCTCCAATTCTTCTT 59.717 37.500 10.49 0.00 31.05 2.52
411 1785 1.667212 TGCTATGCTGCTCGTTGATTG 59.333 47.619 0.00 0.00 0.00 2.67
412 1786 1.003116 GCTATGCTGCTCGTTGATTGG 60.003 52.381 0.00 0.00 0.00 3.16
434 1808 1.501169 GATGCTTTTGTGTTGCACCC 58.499 50.000 0.00 0.00 39.63 4.61
449 1823 2.107546 CCCCGGGGTTCGAATACG 59.892 66.667 33.25 6.62 42.43 3.06
457 1834 2.881827 TTCGAATACGCACGCCGG 60.882 61.111 0.00 0.00 42.52 6.13
469 1846 0.949397 CACGCCGGTGCTATAGTCTA 59.051 55.000 16.69 0.00 37.35 2.59
473 1850 2.987149 CGCCGGTGCTATAGTCTATTTG 59.013 50.000 0.00 0.00 34.43 2.32
483 1860 8.669243 GTGCTATAGTCTATTTGCAAAGTCTTT 58.331 33.333 18.19 2.63 31.68 2.52
485 1862 8.669243 GCTATAGTCTATTTGCAAAGTCTTTGT 58.331 33.333 23.07 8.83 42.56 2.83
499 1876 7.115378 GCAAAGTCTTTGTTATTGTGATCCTTG 59.885 37.037 23.07 0.00 42.56 3.61
500 1877 6.824305 AGTCTTTGTTATTGTGATCCTTGG 57.176 37.500 0.00 0.00 0.00 3.61
503 1880 5.411361 TCTTTGTTATTGTGATCCTTGGACG 59.589 40.000 0.00 0.00 0.00 4.79
518 1895 2.580966 GGACGACATCCCAAGTCTAC 57.419 55.000 0.00 0.00 42.46 2.59
520 1897 2.099427 GGACGACATCCCAAGTCTACTC 59.901 54.545 0.00 0.00 42.46 2.59
521 1898 2.753452 GACGACATCCCAAGTCTACTCA 59.247 50.000 0.00 0.00 33.89 3.41
522 1899 2.492484 ACGACATCCCAAGTCTACTCAC 59.508 50.000 0.00 0.00 33.89 3.51
530 1907 2.094575 CCAAGTCTACTCACGTCTCTCG 59.905 54.545 0.00 0.00 46.00 4.04
542 1922 1.468224 CGTCTCTCGTGATGTCCCTTG 60.468 57.143 0.00 0.00 34.52 3.61
557 1937 3.257127 GTCCCTTGTATCTGCTAGCTAGG 59.743 52.174 22.10 6.77 0.00 3.02
576 1956 4.798288 CATGCTTTGTCATGGGCG 57.202 55.556 0.00 0.00 39.98 6.13
579 1959 3.064324 GCTTTGTCATGGGCGCCT 61.064 61.111 28.56 3.74 0.00 5.52
619 2715 9.528489 TTCTTCTATTACCCTTGTTATTGCTTT 57.472 29.630 0.00 0.00 0.00 3.51
626 2722 4.234574 CCCTTGTTATTGCTTTTTCGGTC 58.765 43.478 0.00 0.00 0.00 4.79
629 2725 5.983118 CCTTGTTATTGCTTTTTCGGTCTTT 59.017 36.000 0.00 0.00 0.00 2.52
642 2738 2.254471 GTCTTTGGACCGGCTTTCC 58.746 57.895 0.00 0.86 36.53 3.13
643 2739 0.536460 GTCTTTGGACCGGCTTTCCA 60.536 55.000 8.17 8.17 41.64 3.53
684 2780 5.768317 TGTTCAGATTTTCAATCCGGTTTC 58.232 37.500 0.00 0.00 0.00 2.78
685 2781 5.161358 GTTCAGATTTTCAATCCGGTTTCC 58.839 41.667 0.00 0.00 0.00 3.13
688 2784 4.220602 CAGATTTTCAATCCGGTTTCCCTT 59.779 41.667 0.00 0.00 0.00 3.95
689 2785 4.838423 AGATTTTCAATCCGGTTTCCCTTT 59.162 37.500 0.00 0.00 0.00 3.11
696 2792 9.476928 TTTCAATCCGGTTTCCCTTTATATAAA 57.523 29.630 0.00 7.66 0.00 1.40
703 2799 9.174166 CCGGTTTCCCTTTATATAAATGGATAG 57.826 37.037 24.44 17.45 38.93 2.08
738 2835 4.079787 CCTAGATCAAATTCAGGTGGGGAA 60.080 45.833 0.00 0.00 0.00 3.97
752 2849 1.689582 GGGAATCCCTCCTCGGTGT 60.690 63.158 11.95 0.00 44.68 4.16
757 2861 0.252284 ATCCCTCCTCGGTGTCTGTT 60.252 55.000 0.00 0.00 0.00 3.16
810 2915 1.749334 GACATGGGCGAGGGACTAGG 61.749 65.000 0.00 0.00 41.55 3.02
849 2954 1.104630 CACCTCTACGGGTCTTCTCC 58.895 60.000 0.00 0.00 37.52 3.71
853 2958 1.213430 CTCTACGGGTCTTCTCCTCCT 59.787 57.143 0.00 0.00 0.00 3.69
1251 3391 3.649277 CTTCGACGCCTCCCACCAG 62.649 68.421 0.00 0.00 0.00 4.00
1283 3423 2.032681 GCACGCCTTCCCTGAACT 59.967 61.111 0.00 0.00 0.00 3.01
1298 3438 3.217626 CTGAACTTTTTCTCCAGTGGCT 58.782 45.455 3.51 0.00 32.36 4.75
1323 3463 1.144708 TGTGTGCCCTTCTGATCCAAA 59.855 47.619 0.00 0.00 0.00 3.28
1325 3465 2.029918 GTGTGCCCTTCTGATCCAAAAC 60.030 50.000 0.00 0.00 0.00 2.43
1330 3470 1.200020 CCTTCTGATCCAAAACGCCAC 59.800 52.381 0.00 0.00 0.00 5.01
1336 3476 2.690497 TGATCCAAAACGCCACTTTTCA 59.310 40.909 0.00 0.00 0.00 2.69
1339 3479 2.690497 TCCAAAACGCCACTTTTCATCA 59.310 40.909 0.00 0.00 0.00 3.07
1349 3489 6.037610 ACGCCACTTTTCATCATCTTCTAATC 59.962 38.462 0.00 0.00 0.00 1.75
1351 3491 7.518052 CGCCACTTTTCATCATCTTCTAATCTC 60.518 40.741 0.00 0.00 0.00 2.75
1356 3496 8.777865 TTTTCATCATCTTCTAATCTCGTTGT 57.222 30.769 0.00 0.00 0.00 3.32
1361 3501 6.867550 TCATCTTCTAATCTCGTTGTGTGAT 58.132 36.000 0.00 0.00 32.30 3.06
1401 6236 1.635663 CCATTCCTGGTCAACGCGTC 61.636 60.000 14.44 0.00 37.79 5.19
1430 6282 4.319477 GCTTTGTACTCAATTGAACTGCGA 60.319 41.667 9.88 0.00 33.32 5.10
1449 6311 3.429547 GCGACTTCTAGGATCTTTGCAGA 60.430 47.826 0.00 0.00 0.00 4.26
1469 6332 5.738370 CAGAGCACTGTTTTGTGTACTAAC 58.262 41.667 2.59 0.00 39.89 2.34
1471 6334 3.001939 AGCACTGTTTTGTGTACTAACGC 59.998 43.478 0.00 0.00 39.89 4.84
1513 6378 1.257936 CAGTCGCATGTACGGCAATAC 59.742 52.381 9.61 4.81 40.98 1.89
1519 6384 3.182772 CGCATGTACGGCAATACGAATAA 59.817 43.478 9.61 0.00 37.61 1.40
1522 6387 6.140110 GCATGTACGGCAATACGAATAAAAT 58.860 36.000 4.61 0.00 37.61 1.82
1557 6425 6.760770 CCTCTTGAGCCTTAGTTTAATCAGAG 59.239 42.308 0.00 0.00 0.00 3.35
1560 6428 5.734720 TGAGCCTTAGTTTAATCAGAGGTG 58.265 41.667 6.92 0.00 0.00 4.00
1578 6446 3.393089 GTGTGTGACACTCTCTCCATT 57.607 47.619 17.47 0.00 45.27 3.16
1621 6559 2.213499 CGAATTACATGCACTCCCTCC 58.787 52.381 0.00 0.00 0.00 4.30
1625 6563 5.625150 GAATTACATGCACTCCCTCCTATT 58.375 41.667 0.00 0.00 0.00 1.73
1626 6564 5.653255 ATTACATGCACTCCCTCCTATTT 57.347 39.130 0.00 0.00 0.00 1.40
1634 6572 9.911788 CATGCACTCCCTCCTATTTATATTAAT 57.088 33.333 0.00 0.00 0.00 1.40
1636 6574 9.959721 TGCACTCCCTCCTATTTATATTAATTC 57.040 33.333 0.00 0.00 0.00 2.17
1641 6579 9.268282 TCCCTCCTATTTATATTAATTCTCGCT 57.732 33.333 0.00 0.00 0.00 4.93
1642 6580 9.319143 CCCTCCTATTTATATTAATTCTCGCTG 57.681 37.037 0.00 0.00 0.00 5.18
1666 6604 6.589830 ATTTAGCACAGTACTAAATCAGCG 57.410 37.500 11.65 0.00 43.50 5.18
1667 6605 3.868757 AGCACAGTACTAAATCAGCGA 57.131 42.857 0.00 0.00 0.00 4.93
1668 6606 3.512680 AGCACAGTACTAAATCAGCGAC 58.487 45.455 0.00 0.00 0.00 5.19
1669 6607 2.603560 GCACAGTACTAAATCAGCGACC 59.396 50.000 0.00 0.00 0.00 4.79
1670 6608 3.845178 CACAGTACTAAATCAGCGACCA 58.155 45.455 0.00 0.00 0.00 4.02
1671 6609 4.433615 CACAGTACTAAATCAGCGACCAT 58.566 43.478 0.00 0.00 0.00 3.55
1683 6737 1.134098 AGCGACCATAACCCATCTTGG 60.134 52.381 0.00 0.00 37.25 3.61
1684 6738 1.308998 CGACCATAACCCATCTTGGC 58.691 55.000 0.00 0.00 35.79 4.52
1689 6743 2.836981 CCATAACCCATCTTGGCCAAAA 59.163 45.455 20.91 6.85 35.79 2.44
1695 6749 2.568509 CCCATCTTGGCCAAAATGTTCT 59.431 45.455 26.32 0.00 35.79 3.01
1700 6754 5.309323 TCTTGGCCAAAATGTTCTTATCG 57.691 39.130 20.91 2.76 0.00 2.92
1710 6764 8.798153 CCAAAATGTTCTTATCGTTTGCTAATC 58.202 33.333 0.00 0.00 0.00 1.75
1712 6766 6.619801 ATGTTCTTATCGTTTGCTAATCCC 57.380 37.500 0.00 0.00 0.00 3.85
1718 6772 4.762289 ATCGTTTGCTAATCCCTTCTCT 57.238 40.909 0.00 0.00 0.00 3.10
1721 6775 4.162320 TCGTTTGCTAATCCCTTCTCTGAT 59.838 41.667 0.00 0.00 0.00 2.90
1722 6776 4.878397 CGTTTGCTAATCCCTTCTCTGATT 59.122 41.667 0.00 0.00 35.48 2.57
1723 6777 5.355350 CGTTTGCTAATCCCTTCTCTGATTT 59.645 40.000 0.00 0.00 33.46 2.17
1726 6780 5.118990 TGCTAATCCCTTCTCTGATTTTCG 58.881 41.667 0.00 0.00 33.46 3.46
1729 6783 3.417069 TCCCTTCTCTGATTTTCGCAA 57.583 42.857 0.00 0.00 0.00 4.85
1736 6790 6.147821 CCTTCTCTGATTTTCGCAAAGTAAGA 59.852 38.462 0.00 0.00 0.00 2.10
1741 6795 7.476667 TCTGATTTTCGCAAAGTAAGAAAACA 58.523 30.769 4.97 5.39 43.67 2.83
1748 6802 4.319190 CGCAAAGTAAGAAAACACCATCGA 60.319 41.667 0.00 0.00 0.00 3.59
1755 6809 8.617290 AGTAAGAAAACACCATCGAAAAGTAT 57.383 30.769 0.00 0.00 0.00 2.12
1760 6814 8.576442 AGAAAACACCATCGAAAAGTATCATTT 58.424 29.630 0.00 0.00 0.00 2.32
1763 6817 5.415701 ACACCATCGAAAAGTATCATTTGCT 59.584 36.000 0.00 0.00 0.00 3.91
1766 6820 7.429340 CACCATCGAAAAGTATCATTTGCTAAC 59.571 37.037 0.00 0.00 0.00 2.34
1767 6821 7.120579 ACCATCGAAAAGTATCATTTGCTAACA 59.879 33.333 0.00 0.00 0.00 2.41
1768 6822 7.967854 CCATCGAAAAGTATCATTTGCTAACAA 59.032 33.333 0.00 0.00 0.00 2.83
1769 6823 9.003112 CATCGAAAAGTATCATTTGCTAACAAG 57.997 33.333 0.00 0.00 37.04 3.16
1770 6824 7.526608 TCGAAAAGTATCATTTGCTAACAAGG 58.473 34.615 0.00 0.00 37.04 3.61
1771 6825 6.251376 CGAAAAGTATCATTTGCTAACAAGGC 59.749 38.462 0.00 0.00 37.04 4.35
1773 6827 4.860022 AGTATCATTTGCTAACAAGGCCT 58.140 39.130 0.00 0.00 37.04 5.19
1775 6829 3.153369 TCATTTGCTAACAAGGCCTCA 57.847 42.857 5.23 0.00 37.04 3.86
1777 6831 1.234821 TTTGCTAACAAGGCCTCACG 58.765 50.000 5.23 0.00 37.04 4.35
1779 6833 0.320421 TGCTAACAAGGCCTCACGTC 60.320 55.000 5.23 0.00 0.00 4.34
1780 6834 0.320421 GCTAACAAGGCCTCACGTCA 60.320 55.000 5.23 0.00 0.00 4.35
1781 6835 1.429463 CTAACAAGGCCTCACGTCAC 58.571 55.000 5.23 0.00 0.00 3.67
1782 6836 1.000955 CTAACAAGGCCTCACGTCACT 59.999 52.381 5.23 0.00 0.00 3.41
1784 6838 1.367471 CAAGGCCTCACGTCACTGA 59.633 57.895 5.23 0.00 0.00 3.41
1785 6839 0.036952 CAAGGCCTCACGTCACTGAT 60.037 55.000 5.23 0.00 0.00 2.90
1798 6852 2.250924 TCACTGATGACAGCCTCTTGA 58.749 47.619 0.00 0.00 46.95 3.02
1802 6856 2.233186 CTGATGACAGCCTCTTGAGTGA 59.767 50.000 0.00 0.00 37.33 3.41
1807 6861 1.765314 ACAGCCTCTTGAGTGACACTT 59.235 47.619 10.01 0.00 0.00 3.16
1808 6862 2.141517 CAGCCTCTTGAGTGACACTTG 58.858 52.381 10.01 3.90 0.00 3.16
1809 6863 2.042464 AGCCTCTTGAGTGACACTTGA 58.958 47.619 10.01 7.94 0.00 3.02
1818 6872 6.929049 TCTTGAGTGACACTTGAATTCGTTAT 59.071 34.615 10.01 0.00 0.00 1.89
1820 6874 5.408299 TGAGTGACACTTGAATTCGTTATGG 59.592 40.000 10.01 0.00 0.00 2.74
1826 6880 9.256477 TGACACTTGAATTCGTTATGGTATATC 57.744 33.333 0.04 0.00 0.00 1.63
1828 6882 8.429641 ACACTTGAATTCGTTATGGTATATCCT 58.570 33.333 0.04 0.00 37.07 3.24
1829 6883 8.712363 CACTTGAATTCGTTATGGTATATCCTG 58.288 37.037 0.04 0.00 37.07 3.86
1830 6884 7.878127 ACTTGAATTCGTTATGGTATATCCTGG 59.122 37.037 0.04 0.00 37.07 4.45
1831 6885 7.547697 TGAATTCGTTATGGTATATCCTGGA 57.452 36.000 0.00 0.00 37.07 3.86
1832 6886 7.969004 TGAATTCGTTATGGTATATCCTGGAA 58.031 34.615 0.00 0.00 37.07 3.53
1833 6887 8.602424 TGAATTCGTTATGGTATATCCTGGAAT 58.398 33.333 0.00 0.00 37.07 3.01
1835 6889 6.294361 TCGTTATGGTATATCCTGGAATGG 57.706 41.667 0.00 0.00 37.07 3.16
1849 6906 4.823989 CCTGGAATGGAATGGATACTGTTC 59.176 45.833 0.00 0.00 37.61 3.18
1857 6914 7.572523 TGGAATGGATACTGTTCAATTCATC 57.427 36.000 15.56 1.16 37.66 2.92
1859 6916 7.283807 TGGAATGGATACTGTTCAATTCATCAG 59.716 37.037 15.56 0.00 37.66 2.90
1896 6953 5.106555 ACACTTTGCTTACAAGAATCATCGG 60.107 40.000 0.00 0.00 37.04 4.18
1902 6959 5.116882 GCTTACAAGAATCATCGGTTAGGT 58.883 41.667 0.00 0.00 0.00 3.08
2106 7167 2.877300 GCCAGAGATCCAGAAAGCAACA 60.877 50.000 0.00 0.00 0.00 3.33
2125 7186 1.946768 CAAAGAACTTCTCGCCCAACA 59.053 47.619 0.00 0.00 0.00 3.33
2249 7315 9.619316 CTTACTTCTTATGATCGGTTCTCATAG 57.381 37.037 0.00 0.00 37.03 2.23
2275 7341 4.006989 GGTGACTGTTACATAACATGGCA 58.993 43.478 4.98 5.56 44.34 4.92
2276 7342 4.142687 GGTGACTGTTACATAACATGGCAC 60.143 45.833 20.53 20.53 44.34 5.01
2277 7343 4.454161 GTGACTGTTACATAACATGGCACA 59.546 41.667 22.16 10.85 44.05 4.57
2281 7347 5.534654 ACTGTTACATAACATGGCACAGTTT 59.465 36.000 11.71 0.00 46.67 2.66
2293 7359 3.513515 TGGCACAGTTTGTTTCCTTTTCT 59.486 39.130 0.00 0.00 0.00 2.52
2380 7446 0.976641 TCGAGCACCTGAATCTGGTT 59.023 50.000 9.20 0.00 33.44 3.67
2455 7521 1.134946 GTTCCCAATGGCAATCTTCGG 59.865 52.381 0.00 0.00 0.00 4.30
2504 7570 1.221840 CTGCCCGTTGCTCCTATGT 59.778 57.895 0.00 0.00 42.00 2.29
2506 7572 1.078426 GCCCGTTGCTCCTATGTGT 60.078 57.895 0.00 0.00 36.87 3.72
2532 7602 3.936564 TGCCATGGTTTTTGCTAATTCC 58.063 40.909 14.67 0.00 0.00 3.01
2566 7639 2.656560 AGACGTATGCAGGTCTGAAC 57.343 50.000 14.79 0.00 45.71 3.18
2629 7702 0.531974 ATGTGGCCCACGCTATTACG 60.532 55.000 9.78 0.00 37.14 3.18
2702 7775 5.702670 TGCATTTTGGTTTCAAGTTTGTCAA 59.297 32.000 0.00 0.00 33.98 3.18
2714 7787 4.091453 AGTTTGTCAAGTTGTTTGGACG 57.909 40.909 2.11 0.00 37.39 4.79
2794 7868 1.077068 CACACCGGGTGGCCAATAT 60.077 57.895 29.44 5.24 44.04 1.28
2797 7871 1.285373 ACACCGGGTGGCCAATATTTA 59.715 47.619 29.44 0.00 39.70 1.40
2877 7952 4.568152 TTCAGCAGTTCCTTGTTTTAGC 57.432 40.909 0.00 0.00 0.00 3.09
2887 7962 5.401531 TCCTTGTTTTAGCTCAGATACGT 57.598 39.130 0.00 0.00 0.00 3.57
2891 7966 6.313905 CCTTGTTTTAGCTCAGATACGTTGAT 59.686 38.462 0.00 0.00 0.00 2.57
2892 7967 7.491372 CCTTGTTTTAGCTCAGATACGTTGATA 59.509 37.037 0.00 0.00 0.00 2.15
2907 7982 4.081420 ACGTTGATACTGCAGAATCCTTCT 60.081 41.667 23.35 0.00 41.70 2.85
2926 8001 5.932883 CCTTCTGGGAAAAACAGAGTACTAC 59.067 44.000 0.00 0.00 44.91 2.73
2979 8054 8.899427 TTCAGATAGAAGATAAGCTGAAATGG 57.101 34.615 0.00 0.00 38.84 3.16
3028 8108 6.382919 AACTAACAACCAAGCCTAGGATAA 57.617 37.500 14.75 0.00 0.00 1.75
3104 8186 8.306680 TCGAAACCAAATTTAGACTAGAACTG 57.693 34.615 0.00 0.00 28.07 3.16
3116 8198 9.653287 TTTAGACTAGAACTGTAATTGGTGATG 57.347 33.333 0.00 0.00 0.00 3.07
3182 8267 4.339247 AGGGGAAAATATGATTCGTTGCAG 59.661 41.667 0.00 0.00 0.00 4.41
3210 8362 6.441088 AAGACCTGACCATATATTTCTCCC 57.559 41.667 0.00 0.00 0.00 4.30
3317 8469 0.881118 GATTTGCGAAACTGGCTCCA 59.119 50.000 0.00 0.00 0.00 3.86
3329 8481 1.292223 GGCTCCAACTGACGCTACA 59.708 57.895 0.00 0.00 0.00 2.74
3359 8511 3.567478 ACTCAAGTCAAAGGAACAGCT 57.433 42.857 0.00 0.00 0.00 4.24
3425 8577 6.013379 TGAGAAGAGTGATGTCTACTCCTTT 58.987 40.000 0.00 0.00 44.35 3.11
3581 8734 8.924511 TCAATATCAAATGAAATACTCCCTCC 57.075 34.615 0.00 0.00 0.00 4.30
3582 8735 7.661437 TCAATATCAAATGAAATACTCCCTCCG 59.339 37.037 0.00 0.00 0.00 4.63
3583 8736 5.630415 ATCAAATGAAATACTCCCTCCGA 57.370 39.130 0.00 0.00 0.00 4.55
3586 8739 5.366768 TCAAATGAAATACTCCCTCCGATCT 59.633 40.000 0.00 0.00 0.00 2.75
3587 8740 6.553476 TCAAATGAAATACTCCCTCCGATCTA 59.447 38.462 0.00 0.00 0.00 1.98
3588 8741 6.597832 AATGAAATACTCCCTCCGATCTAG 57.402 41.667 0.00 0.00 0.00 2.43
3591 8744 3.818295 ATACTCCCTCCGATCTAGCTT 57.182 47.619 0.00 0.00 0.00 3.74
3593 8746 3.596940 ACTCCCTCCGATCTAGCTTTA 57.403 47.619 0.00 0.00 0.00 1.85
3594 8747 3.912248 ACTCCCTCCGATCTAGCTTTAA 58.088 45.455 0.00 0.00 0.00 1.52
3595 8748 4.484912 ACTCCCTCCGATCTAGCTTTAAT 58.515 43.478 0.00 0.00 0.00 1.40
3596 8749 4.282195 ACTCCCTCCGATCTAGCTTTAATG 59.718 45.833 0.00 0.00 0.00 1.90
3598 8751 3.325135 CCCTCCGATCTAGCTTTAATGGT 59.675 47.826 0.00 0.00 0.00 3.55
3599 8752 4.202367 CCCTCCGATCTAGCTTTAATGGTT 60.202 45.833 0.00 0.00 0.00 3.67
3600 8753 5.011738 CCCTCCGATCTAGCTTTAATGGTTA 59.988 44.000 0.00 0.00 0.00 2.85
3601 8754 5.927115 CCTCCGATCTAGCTTTAATGGTTAC 59.073 44.000 0.00 0.00 0.00 2.50
3605 8758 8.698210 TCCGATCTAGCTTTAATGGTTACTAAA 58.302 33.333 0.00 0.00 0.00 1.85
3606 8759 8.979574 CCGATCTAGCTTTAATGGTTACTAAAG 58.020 37.037 0.00 0.00 37.91 1.85
3613 8766 5.789710 TTAATGGTTACTAAAGCTGCGTC 57.210 39.130 0.00 0.00 34.13 5.19
3614 8767 2.823924 TGGTTACTAAAGCTGCGTCA 57.176 45.000 0.00 0.00 34.13 4.35
3615 8768 3.114668 TGGTTACTAAAGCTGCGTCAA 57.885 42.857 0.00 0.00 34.13 3.18
3616 8769 3.670625 TGGTTACTAAAGCTGCGTCAAT 58.329 40.909 0.00 0.00 34.13 2.57
3619 8800 5.701750 TGGTTACTAAAGCTGCGTCAATTAA 59.298 36.000 0.00 0.00 34.13 1.40
3621 8802 7.094549 TGGTTACTAAAGCTGCGTCAATTAATT 60.095 33.333 0.00 0.00 34.13 1.40
3625 8806 4.782019 AAGCTGCGTCAATTAATTTGGA 57.218 36.364 0.00 0.00 35.92 3.53
3626 8807 4.989279 AGCTGCGTCAATTAATTTGGAT 57.011 36.364 0.00 0.00 35.92 3.41
3628 8809 3.725740 GCTGCGTCAATTAATTTGGATCG 59.274 43.478 0.00 2.97 35.92 3.69
3642 8823 3.605726 TGGATCGGAGGGAGTATGTAA 57.394 47.619 0.00 0.00 0.00 2.41
3738 8921 4.800249 GCACAGGCAATGGAAAAATTCTCA 60.800 41.667 0.00 0.00 40.72 3.27
3774 8957 7.602644 GCGATATTAACACTGGATCCAAATCTA 59.397 37.037 17.00 2.66 32.12 1.98
3801 8984 4.980805 GACGCGACCAACCTGGCA 62.981 66.667 15.93 0.00 42.67 4.92
3804 8987 2.625823 CGCGACCAACCTGGCAATT 61.626 57.895 0.00 0.00 42.67 2.32
3945 9128 2.158608 ACCAACCTCCTCTTGAACCAAG 60.159 50.000 0.51 0.51 42.25 3.61
3953 9136 0.250901 TCTTGAACCAAGGCAGCTCC 60.251 55.000 6.83 0.00 41.33 4.70
3955 9138 0.538057 TTGAACCAAGGCAGCTCCTG 60.538 55.000 5.60 0.00 46.94 3.86
3972 9155 3.415212 TCCTGTGGAGCAATCAAGAAAG 58.585 45.455 0.00 0.00 0.00 2.62
3975 9158 2.957680 TGTGGAGCAATCAAGAAAGCAA 59.042 40.909 0.00 0.00 0.00 3.91
4011 9195 3.255642 GCCAGTTTGCCTCACTTCAATTA 59.744 43.478 0.00 0.00 0.00 1.40
4031 9219 6.906157 ATTAAAAGCATGGAGGTATGGATG 57.094 37.500 0.00 0.00 0.00 3.51
4038 9226 2.689658 TGGAGGTATGGATGAACCGAT 58.310 47.619 0.00 0.00 40.88 4.18
4052 9240 2.716244 CGATCGCTGAGCTACGGT 59.284 61.111 0.26 0.00 0.00 4.83
4057 9245 2.580867 GCTGAGCTACGGTCTGCG 60.581 66.667 0.00 0.00 42.75 5.18
4195 9383 3.310501 AGCAAGCACAAGCAATTTCAAAC 59.689 39.130 0.00 0.00 45.49 2.93
4237 9425 9.469807 GATGGTGTCTGTATGTTATAGAAGAAG 57.530 37.037 0.00 0.00 0.00 2.85
4275 9463 4.652421 AGAGCATGCATTTCCCATGTATTT 59.348 37.500 21.98 0.00 41.56 1.40
4552 9745 2.240921 TCTCTCTGCCTTCTCTGAGCTA 59.759 50.000 0.00 0.00 33.65 3.32
4555 9748 2.760092 CTCTGCCTTCTCTGAGCTACTT 59.240 50.000 0.00 0.00 0.00 2.24
4595 9788 1.688197 TCGAGGAAACGGTACAACCTT 59.312 47.619 0.00 0.00 35.66 3.50
4602 9795 0.881600 ACGGTACAACCTTTGCCGAC 60.882 55.000 8.31 0.00 44.57 4.79
4633 9826 0.458669 CATGCAGGGTTGGATGCTTC 59.541 55.000 0.00 0.00 44.49 3.86
4664 9857 2.823154 ACTTTCTAGAGCGAGCTGAGTT 59.177 45.455 0.84 0.00 0.00 3.01
4671 9864 1.458827 GAGCGAGCTGAGTTTGTTCTG 59.541 52.381 0.84 0.00 0.00 3.02
4784 9985 3.516615 CTTCATGGACGTTTCTCTCCTC 58.483 50.000 0.00 0.00 0.00 3.71
4789 9990 0.241481 GACGTTTCTCTCCTCGTGCT 59.759 55.000 0.00 0.00 36.67 4.40
4832 10033 0.247460 CTCTGAGGGTTCGTGCATCA 59.753 55.000 0.00 0.00 0.00 3.07
4842 10043 0.240678 TCGTGCATCAATGTGGTTGC 59.759 50.000 0.00 0.00 37.74 4.17
4861 10062 0.665670 CGGCTCCGATGCTACAGATG 60.666 60.000 1.35 0.00 42.83 2.90
4868 10069 1.436600 GATGCTACAGATGATGCCCG 58.563 55.000 0.00 0.00 0.00 6.13
4894 10095 1.077429 GGAGCTGTGTGGGGAATCC 60.077 63.158 0.00 0.00 0.00 3.01
4902 10103 4.248908 TGGGGAATCCACTCTGCA 57.751 55.556 2.08 0.00 41.46 4.41
4916 10117 1.875813 CTGCATCTGTCCGTCGAGC 60.876 63.158 0.00 0.00 0.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 0.996762 AGGACCACACCCCCAAGAAA 60.997 55.000 0.00 0.00 0.00 2.52
29 30 0.105709 AAAAGGACCACACCCCCAAG 60.106 55.000 0.00 0.00 0.00 3.61
30 31 0.397816 CAAAAGGACCACACCCCCAA 60.398 55.000 0.00 0.00 0.00 4.12
45 46 1.071071 CGGGTCAGGTACAGGTCAAAA 59.929 52.381 0.00 0.00 0.00 2.44
46 47 0.682852 CGGGTCAGGTACAGGTCAAA 59.317 55.000 0.00 0.00 0.00 2.69
81 82 0.953471 CGTCAATGGACTTTCGGCCA 60.953 55.000 2.24 0.00 42.05 5.36
83 84 0.442699 GTCGTCAATGGACTTTCGGC 59.557 55.000 0.00 0.00 42.05 5.54
84 85 0.713883 CGTCGTCAATGGACTTTCGG 59.286 55.000 0.00 0.00 42.05 4.30
86 87 1.385743 CGACGTCGTCAATGGACTTTC 59.614 52.381 29.08 0.00 42.05 2.62
109 110 3.009301 AGAAGGTAAACGACGTCTGTG 57.991 47.619 14.70 0.15 0.00 3.66
113 114 4.147826 GTCTTCAAGAAGGTAAACGACGTC 59.852 45.833 5.18 5.18 38.88 4.34
195 889 3.696782 CTTGAGCAAGCATCAGCAC 57.303 52.632 0.00 0.00 45.49 4.40
255 949 3.188492 CATTTTGCGCCATCATTTAGCA 58.812 40.909 4.18 0.00 35.90 3.49
256 950 2.033492 GCATTTTGCGCCATCATTTAGC 60.033 45.455 4.18 0.00 31.71 3.09
273 967 5.186198 ACGATTAGCAAGTTAGGAAGCATT 58.814 37.500 0.00 0.00 0.00 3.56
282 976 7.309920 GGGAAATTGAAACGATTAGCAAGTTA 58.690 34.615 0.00 0.00 30.03 2.24
308 1002 4.863925 GACTGAGAGCTCCGCCGC 62.864 72.222 10.93 0.00 0.00 6.53
309 1003 2.880719 CTTGACTGAGAGCTCCGCCG 62.881 65.000 10.93 1.98 0.00 6.46
314 1008 2.805099 CACAAACCTTGACTGAGAGCTC 59.195 50.000 5.27 5.27 0.00 4.09
317 1011 4.191544 TGAACACAAACCTTGACTGAGAG 58.808 43.478 0.00 0.00 0.00 3.20
320 1014 4.780815 AGATGAACACAAACCTTGACTGA 58.219 39.130 0.00 0.00 0.00 3.41
324 1018 4.103153 AGAGGAGATGAACACAAACCTTGA 59.897 41.667 0.00 0.00 0.00 3.02
332 1026 3.095332 CCAGAGAGAGGAGATGAACACA 58.905 50.000 0.00 0.00 0.00 3.72
333 1027 3.130340 GTCCAGAGAGAGGAGATGAACAC 59.870 52.174 0.00 0.00 35.42 3.32
339 1033 2.292126 TGCAAGTCCAGAGAGAGGAGAT 60.292 50.000 0.00 0.00 35.42 2.75
342 1036 2.235650 CAATGCAAGTCCAGAGAGAGGA 59.764 50.000 0.00 0.00 0.00 3.71
343 1037 2.630158 CAATGCAAGTCCAGAGAGAGG 58.370 52.381 0.00 0.00 0.00 3.69
344 1038 2.008329 GCAATGCAAGTCCAGAGAGAG 58.992 52.381 0.00 0.00 0.00 3.20
345 1039 1.627329 AGCAATGCAAGTCCAGAGAGA 59.373 47.619 8.35 0.00 0.00 3.10
346 1040 2.008329 GAGCAATGCAAGTCCAGAGAG 58.992 52.381 8.35 0.00 0.00 3.20
348 1042 1.093159 GGAGCAATGCAAGTCCAGAG 58.907 55.000 8.35 0.00 0.00 3.35
349 1043 0.401356 TGGAGCAATGCAAGTCCAGA 59.599 50.000 10.18 0.00 0.00 3.86
351 1045 1.927487 ATTGGAGCAATGCAAGTCCA 58.073 45.000 10.18 10.18 32.39 4.02
352 1046 2.494870 AGAATTGGAGCAATGCAAGTCC 59.505 45.455 8.35 6.52 34.04 3.85
353 1047 3.863142 AGAATTGGAGCAATGCAAGTC 57.137 42.857 8.35 1.89 34.04 3.01
354 1048 3.830755 AGAAGAATTGGAGCAATGCAAGT 59.169 39.130 8.35 0.00 34.04 3.16
399 1773 1.452110 CATCCACCAATCAACGAGCA 58.548 50.000 0.00 0.00 0.00 4.26
411 1785 1.202510 TGCAACACAAAAGCATCCACC 60.203 47.619 0.00 0.00 32.55 4.61
412 1786 1.860326 GTGCAACACAAAAGCATCCAC 59.140 47.619 0.00 0.00 40.78 4.02
434 1808 2.169146 GTGCGTATTCGAACCCCGG 61.169 63.158 0.00 0.00 39.51 5.73
457 1834 7.778470 AGACTTTGCAAATAGACTATAGCAC 57.222 36.000 13.23 9.55 31.73 4.40
459 1836 8.669243 ACAAAGACTTTGCAAATAGACTATAGC 58.331 33.333 24.63 11.13 44.39 2.97
464 1841 9.683069 CAATAACAAAGACTTTGCAAATAGACT 57.317 29.630 24.63 4.81 44.39 3.24
469 1846 8.891671 ATCACAATAACAAAGACTTTGCAAAT 57.108 26.923 24.63 14.03 44.39 2.32
473 1850 6.681777 AGGATCACAATAACAAAGACTTTGC 58.318 36.000 24.63 7.00 44.39 3.68
483 1860 4.250464 GTCGTCCAAGGATCACAATAACA 58.750 43.478 0.00 0.00 0.00 2.41
485 1862 4.545208 TGTCGTCCAAGGATCACAATAA 57.455 40.909 0.00 0.00 0.00 1.40
500 1877 2.753452 TGAGTAGACTTGGGATGTCGTC 59.247 50.000 0.00 0.00 39.24 4.20
503 1880 2.492484 ACGTGAGTAGACTTGGGATGTC 59.508 50.000 0.00 0.00 46.88 3.06
530 1907 3.550437 AGCAGATACAAGGGACATCAC 57.450 47.619 0.00 0.00 0.00 3.06
533 1910 3.312890 AGCTAGCAGATACAAGGGACAT 58.687 45.455 18.83 0.00 0.00 3.06
542 1922 2.676463 GCATGGCCTAGCTAGCAGATAC 60.676 54.545 18.83 4.64 0.00 2.24
600 1980 6.014925 ACCGAAAAAGCAATAACAAGGGTAAT 60.015 34.615 0.00 0.00 0.00 1.89
626 2722 0.821711 TGTGGAAAGCCGGTCCAAAG 60.822 55.000 13.53 0.00 46.66 2.77
629 2725 0.693622 TTATGTGGAAAGCCGGTCCA 59.306 50.000 8.17 8.17 43.03 4.02
642 2738 4.668576 ACAAGTCGACTGCATTTATGTG 57.331 40.909 20.85 12.49 0.00 3.21
643 2739 4.754618 TGAACAAGTCGACTGCATTTATGT 59.245 37.500 20.85 14.70 0.00 2.29
696 2792 9.620259 GATCTAGGTCAAAGAAAAACTATCCAT 57.380 33.333 0.00 0.00 0.00 3.41
714 2810 3.203040 CCCCACCTGAATTTGATCTAGGT 59.797 47.826 0.00 0.00 42.23 3.08
715 2811 3.459598 TCCCCACCTGAATTTGATCTAGG 59.540 47.826 0.00 0.00 34.70 3.02
738 2835 0.252284 AACAGACACCGAGGAGGGAT 60.252 55.000 0.00 0.00 46.96 3.85
810 2915 3.204827 CCACGGCTGCATGTAGGC 61.205 66.667 24.65 24.65 39.65 3.93
849 2954 2.393271 ATTCAGGACTTGCGAAGGAG 57.607 50.000 0.00 0.00 0.00 3.69
853 2958 3.007506 TGGACTAATTCAGGACTTGCGAA 59.992 43.478 0.00 0.00 0.00 4.70
1283 3423 1.494721 ACAGGAGCCACTGGAGAAAAA 59.505 47.619 9.71 0.00 42.75 1.94
1298 3438 1.053835 TCAGAAGGGCACACACAGGA 61.054 55.000 0.00 0.00 0.00 3.86
1323 3463 4.074970 AGAAGATGATGAAAAGTGGCGTT 58.925 39.130 0.00 0.00 0.00 4.84
1325 3465 5.801350 TTAGAAGATGATGAAAAGTGGCG 57.199 39.130 0.00 0.00 0.00 5.69
1330 3470 8.877779 ACAACGAGATTAGAAGATGATGAAAAG 58.122 33.333 0.00 0.00 0.00 2.27
1336 3476 6.867550 TCACACAACGAGATTAGAAGATGAT 58.132 36.000 0.00 0.00 0.00 2.45
1339 3479 8.001881 ACTATCACACAACGAGATTAGAAGAT 57.998 34.615 0.00 0.00 0.00 2.40
1349 3489 9.731819 AACAATATACTACTATCACACAACGAG 57.268 33.333 0.00 0.00 0.00 4.18
1351 3491 8.679385 CGAACAATATACTACTATCACACAACG 58.321 37.037 0.00 0.00 0.00 4.10
1356 3496 9.726232 GTTGACGAACAATATACTACTATCACA 57.274 33.333 0.00 0.00 40.76 3.58
1361 3501 9.740239 GAATGGTTGACGAACAATATACTACTA 57.260 33.333 0.00 0.00 40.76 1.82
1386 6221 2.430382 GAAGGACGCGTTGACCAGGA 62.430 60.000 15.53 0.00 34.56 3.86
1401 6236 5.947228 TCAATTGAGTACAAAGCTGAAGG 57.053 39.130 3.38 0.00 39.54 3.46
1430 6282 3.517100 TGCTCTGCAAAGATCCTAGAAGT 59.483 43.478 0.00 0.00 34.76 3.01
1449 6311 3.001939 GCGTTAGTACACAAAACAGTGCT 59.998 43.478 0.00 0.00 43.23 4.40
1469 6332 0.688087 AGGGGGACTCTTTCCTAGCG 60.688 60.000 0.00 0.00 45.09 4.26
1471 6334 1.342175 ACGAGGGGGACTCTTTCCTAG 60.342 57.143 0.00 0.00 45.09 3.02
1513 6378 8.777413 TCAAGAGGAGAATGCATATTTTATTCG 58.223 33.333 0.00 0.00 36.27 3.34
1560 6428 4.792521 ACTAATGGAGAGAGTGTCACAC 57.207 45.455 0.00 0.00 34.10 3.82
1597 6535 3.451178 AGGGAGTGCATGTAATTCGTAGT 59.549 43.478 0.00 0.00 0.00 2.73
1598 6536 4.051922 GAGGGAGTGCATGTAATTCGTAG 58.948 47.826 0.00 0.00 0.00 3.51
1599 6537 3.181469 GGAGGGAGTGCATGTAATTCGTA 60.181 47.826 0.00 0.00 0.00 3.43
1600 6538 2.420129 GGAGGGAGTGCATGTAATTCGT 60.420 50.000 0.00 0.00 0.00 3.85
1601 6539 2.158900 AGGAGGGAGTGCATGTAATTCG 60.159 50.000 0.00 0.00 0.00 3.34
1603 6541 5.653255 AATAGGAGGGAGTGCATGTAATT 57.347 39.130 0.00 0.00 0.00 1.40
1604 6542 5.653255 AAATAGGAGGGAGTGCATGTAAT 57.347 39.130 0.00 0.00 0.00 1.89
1606 6544 8.449423 AATATAAATAGGAGGGAGTGCATGTA 57.551 34.615 0.00 0.00 0.00 2.29
1607 6545 6.959606 ATATAAATAGGAGGGAGTGCATGT 57.040 37.500 0.00 0.00 0.00 3.21
1610 6548 9.959721 GAATTAATATAAATAGGAGGGAGTGCA 57.040 33.333 0.00 0.00 0.00 4.57
1644 6582 5.575606 GTCGCTGATTTAGTACTGTGCTAAA 59.424 40.000 25.90 25.90 41.04 1.85
1649 6587 3.845178 TGGTCGCTGATTTAGTACTGTG 58.155 45.455 5.39 0.00 0.00 3.66
1653 6591 4.748600 GGGTTATGGTCGCTGATTTAGTAC 59.251 45.833 0.00 0.00 0.00 2.73
1654 6592 4.406326 TGGGTTATGGTCGCTGATTTAGTA 59.594 41.667 0.00 0.00 0.00 1.82
1655 6593 3.199071 TGGGTTATGGTCGCTGATTTAGT 59.801 43.478 0.00 0.00 0.00 2.24
1656 6594 3.804036 TGGGTTATGGTCGCTGATTTAG 58.196 45.455 0.00 0.00 0.00 1.85
1658 6596 2.799126 TGGGTTATGGTCGCTGATTT 57.201 45.000 0.00 0.00 0.00 2.17
1660 6598 2.050144 AGATGGGTTATGGTCGCTGAT 58.950 47.619 0.00 0.00 0.00 2.90
1661 6599 1.496060 AGATGGGTTATGGTCGCTGA 58.504 50.000 0.00 0.00 0.00 4.26
1662 6600 1.942657 CAAGATGGGTTATGGTCGCTG 59.057 52.381 0.00 0.00 0.00 5.18
1663 6601 1.134098 CCAAGATGGGTTATGGTCGCT 60.134 52.381 0.00 0.00 32.67 4.93
1664 6602 1.308998 CCAAGATGGGTTATGGTCGC 58.691 55.000 0.00 0.00 32.67 5.19
1666 6604 1.064017 TGGCCAAGATGGGTTATGGTC 60.064 52.381 0.61 0.00 38.19 4.02
1667 6605 1.006813 TGGCCAAGATGGGTTATGGT 58.993 50.000 0.61 0.00 38.19 3.55
1668 6606 2.157640 TTGGCCAAGATGGGTTATGG 57.842 50.000 16.05 0.00 38.19 2.74
1669 6607 4.080975 ACATTTTGGCCAAGATGGGTTATG 60.081 41.667 37.98 22.23 38.19 1.90
1670 6608 4.103342 ACATTTTGGCCAAGATGGGTTAT 58.897 39.130 37.98 22.56 38.19 1.89
1671 6609 3.515562 ACATTTTGGCCAAGATGGGTTA 58.484 40.909 37.98 14.83 38.19 2.85
1683 6737 4.923281 AGCAAACGATAAGAACATTTTGGC 59.077 37.500 0.00 0.00 0.00 4.52
1684 6738 8.687824 ATTAGCAAACGATAAGAACATTTTGG 57.312 30.769 0.00 0.00 0.00 3.28
1689 6743 6.357367 AGGGATTAGCAAACGATAAGAACAT 58.643 36.000 0.00 0.00 0.00 2.71
1695 6749 6.049149 CAGAGAAGGGATTAGCAAACGATAA 58.951 40.000 0.00 0.00 0.00 1.75
1700 6754 6.765915 AAATCAGAGAAGGGATTAGCAAAC 57.234 37.500 0.00 0.00 33.57 2.93
1710 6764 3.503748 ACTTTGCGAAAATCAGAGAAGGG 59.496 43.478 0.00 0.00 0.00 3.95
1712 6766 7.121974 TCTTACTTTGCGAAAATCAGAGAAG 57.878 36.000 0.00 0.00 0.00 2.85
1718 6772 6.474102 GGTGTTTTCTTACTTTGCGAAAATCA 59.526 34.615 0.00 0.00 38.45 2.57
1721 6775 5.710984 TGGTGTTTTCTTACTTTGCGAAAA 58.289 33.333 0.00 0.00 35.12 2.29
1722 6776 5.312120 TGGTGTTTTCTTACTTTGCGAAA 57.688 34.783 0.00 0.00 0.00 3.46
1723 6777 4.966965 TGGTGTTTTCTTACTTTGCGAA 57.033 36.364 0.00 0.00 0.00 4.70
1726 6780 5.103290 TCGATGGTGTTTTCTTACTTTGC 57.897 39.130 0.00 0.00 0.00 3.68
1729 6783 7.329588 ACTTTTCGATGGTGTTTTCTTACTT 57.670 32.000 0.00 0.00 0.00 2.24
1736 6790 7.116233 GCAAATGATACTTTTCGATGGTGTTTT 59.884 33.333 0.00 0.00 0.00 2.43
1741 6795 7.120579 TGTTAGCAAATGATACTTTTCGATGGT 59.879 33.333 0.00 0.00 0.00 3.55
1748 6802 6.211384 AGGCCTTGTTAGCAAATGATACTTTT 59.789 34.615 0.00 0.00 33.73 2.27
1755 6809 2.819608 GTGAGGCCTTGTTAGCAAATGA 59.180 45.455 6.77 0.00 33.73 2.57
1760 6814 0.320421 GACGTGAGGCCTTGTTAGCA 60.320 55.000 6.77 0.00 0.00 3.49
1763 6817 1.045407 AGTGACGTGAGGCCTTGTTA 58.955 50.000 6.77 0.00 39.67 2.41
1766 6820 0.036952 ATCAGTGACGTGAGGCCTTG 60.037 55.000 6.77 2.30 39.67 3.61
1767 6821 0.036952 CATCAGTGACGTGAGGCCTT 60.037 55.000 6.77 0.00 39.67 4.35
1768 6822 0.900182 TCATCAGTGACGTGAGGCCT 60.900 55.000 3.86 3.86 39.67 5.19
1769 6823 0.737715 GTCATCAGTGACGTGAGGCC 60.738 60.000 0.00 0.00 44.71 5.19
1770 6824 2.743195 GTCATCAGTGACGTGAGGC 58.257 57.895 0.00 0.00 44.71 4.70
1779 6833 2.028294 ACTCAAGAGGCTGTCATCAGTG 60.028 50.000 0.00 0.00 43.05 3.66
1780 6834 2.028294 CACTCAAGAGGCTGTCATCAGT 60.028 50.000 0.00 0.00 43.05 3.41
1781 6835 2.233186 TCACTCAAGAGGCTGTCATCAG 59.767 50.000 0.00 0.00 43.87 2.90
1782 6836 2.028658 GTCACTCAAGAGGCTGTCATCA 60.029 50.000 0.00 0.00 0.00 3.07
1784 6838 1.973515 TGTCACTCAAGAGGCTGTCAT 59.026 47.619 0.00 0.00 0.00 3.06
1785 6839 1.069204 GTGTCACTCAAGAGGCTGTCA 59.931 52.381 0.00 0.00 0.00 3.58
1788 6842 2.141517 CAAGTGTCACTCAAGAGGCTG 58.858 52.381 5.82 0.00 0.00 4.85
1795 6849 6.073276 CCATAACGAATTCAAGTGTCACTCAA 60.073 38.462 5.82 2.92 0.00 3.02
1798 6852 5.305585 ACCATAACGAATTCAAGTGTCACT 58.694 37.500 6.22 0.00 0.00 3.41
1802 6856 8.429641 AGGATATACCATAACGAATTCAAGTGT 58.570 33.333 6.22 0.00 42.04 3.55
1807 6861 7.547697 TCCAGGATATACCATAACGAATTCA 57.452 36.000 6.22 0.00 42.04 2.57
1808 6862 8.883731 CATTCCAGGATATACCATAACGAATTC 58.116 37.037 0.00 0.00 42.04 2.17
1809 6863 7.829211 CCATTCCAGGATATACCATAACGAATT 59.171 37.037 0.00 0.00 42.04 2.17
1818 6872 5.169438 TCCATTCCATTCCAGGATATACCA 58.831 41.667 0.00 0.00 42.04 3.25
1820 6874 7.989741 CAGTATCCATTCCATTCCAGGATATAC 59.010 40.741 0.00 0.00 41.76 1.47
1826 6880 4.443978 ACAGTATCCATTCCATTCCAGG 57.556 45.455 0.00 0.00 0.00 4.45
1828 6882 5.449297 TGAACAGTATCCATTCCATTCCA 57.551 39.130 0.00 0.00 0.00 3.53
1829 6883 6.966534 ATTGAACAGTATCCATTCCATTCC 57.033 37.500 0.00 0.00 0.00 3.01
1830 6884 7.999679 TGAATTGAACAGTATCCATTCCATTC 58.000 34.615 0.00 0.00 36.09 2.67
1831 6885 7.959658 TGAATTGAACAGTATCCATTCCATT 57.040 32.000 0.00 0.00 32.99 3.16
1832 6886 7.781219 TGATGAATTGAACAGTATCCATTCCAT 59.219 33.333 0.00 0.00 32.99 3.41
1833 6887 7.118060 TGATGAATTGAACAGTATCCATTCCA 58.882 34.615 0.00 0.00 32.99 3.53
1835 6889 8.341173 GTCTGATGAATTGAACAGTATCCATTC 58.659 37.037 2.34 0.00 33.99 2.67
1849 6906 9.229784 GTGTTATTTGCATAGTCTGATGAATTG 57.770 33.333 0.00 0.00 0.00 2.32
1890 6947 5.479375 AGTTTACAGAGAACCTAACCGATGA 59.521 40.000 0.00 0.00 0.00 2.92
1896 6953 7.873505 ACATCTGAAGTTTACAGAGAACCTAAC 59.126 37.037 0.00 0.00 45.49 2.34
1902 6959 5.920840 CGTCACATCTGAAGTTTACAGAGAA 59.079 40.000 0.00 0.00 45.49 2.87
2106 7167 2.341846 TGTTGGGCGAGAAGTTCTTT 57.658 45.000 6.88 0.00 0.00 2.52
2125 7186 0.032813 CCACCCTGCCCAATCTTGAT 60.033 55.000 0.00 0.00 0.00 2.57
2275 7341 6.210584 TCTGGAAAGAAAAGGAAACAAACTGT 59.789 34.615 0.00 0.00 0.00 3.55
2276 7342 6.630071 TCTGGAAAGAAAAGGAAACAAACTG 58.370 36.000 0.00 0.00 0.00 3.16
2277 7343 6.850752 TCTGGAAAGAAAAGGAAACAAACT 57.149 33.333 0.00 0.00 0.00 2.66
2281 7347 8.477419 ACATATTCTGGAAAGAAAAGGAAACA 57.523 30.769 0.00 0.00 0.00 2.83
2286 7352 9.177608 TGTCATACATATTCTGGAAAGAAAAGG 57.822 33.333 0.00 0.00 0.00 3.11
2293 7359 9.797642 ATATGCTTGTCATACATATTCTGGAAA 57.202 29.630 3.41 0.00 40.22 3.13
2349 7415 3.267118 GCTCGATGCATCGCAGCA 61.267 61.111 38.78 27.06 45.92 4.41
2380 7446 2.576191 CTCAAGGAACCCATGGAACCTA 59.424 50.000 15.22 4.01 33.56 3.08
2478 7544 1.523938 GCAACGGGCAGGATCCTAC 60.524 63.158 15.67 9.07 43.97 3.18
2504 7570 3.514706 AGCAAAAACCATGGCATCATACA 59.485 39.130 13.04 0.00 31.33 2.29
2506 7572 5.929058 TTAGCAAAAACCATGGCATCATA 57.071 34.783 13.04 0.00 31.33 2.15
2532 7602 5.398711 GCATACGTCTAAACTCGGTAAGATG 59.601 44.000 0.00 0.00 0.00 2.90
2629 7702 6.770746 TTACCAGAGTAGGTGTGAAGATAC 57.229 41.667 0.00 0.00 43.14 2.24
2702 7775 5.961272 AGAACAAAAATCGTCCAAACAACT 58.039 33.333 0.00 0.00 0.00 3.16
2741 7814 4.378874 GCCGAACCTTTCAGATTCAAGAAG 60.379 45.833 0.00 0.00 0.00 2.85
2761 7834 1.627879 GTGTGCCAACATATTTGCCG 58.372 50.000 0.00 0.00 38.92 5.69
2815 7889 6.266786 TCTTTCTTTAATTTCTTTTCCGGGCT 59.733 34.615 0.00 0.00 0.00 5.19
2816 7890 6.452242 TCTTTCTTTAATTTCTTTTCCGGGC 58.548 36.000 0.00 0.00 0.00 6.13
2857 7932 3.815401 GAGCTAAAACAAGGAACTGCTGA 59.185 43.478 0.00 0.00 40.86 4.26
2863 7938 5.638234 ACGTATCTGAGCTAAAACAAGGAAC 59.362 40.000 0.00 0.00 0.00 3.62
2877 7952 5.175090 TCTGCAGTATCAACGTATCTGAG 57.825 43.478 14.67 0.00 0.00 3.35
2907 7982 5.881923 ACAGTAGTACTCTGTTTTTCCCA 57.118 39.130 17.18 0.00 42.50 4.37
2909 7984 8.305317 ACAGATACAGTAGTACTCTGTTTTTCC 58.695 37.037 23.80 13.50 42.50 3.13
2910 7985 9.694137 AACAGATACAGTAGTACTCTGTTTTTC 57.306 33.333 23.80 18.99 44.83 2.29
2926 8001 3.829948 CAAAAGCAGCCAACAGATACAG 58.170 45.455 0.00 0.00 0.00 2.74
2929 8004 2.517959 AGCAAAAGCAGCCAACAGATA 58.482 42.857 0.00 0.00 0.00 1.98
2961 8036 6.151817 GGTTTCACCATTTCAGCTTATCTTCT 59.848 38.462 0.00 0.00 38.42 2.85
2978 8053 6.813152 CAGAAATATTCAACATGGGTTTCACC 59.187 38.462 0.00 0.00 34.21 4.02
2979 8054 6.813152 CCAGAAATATTCAACATGGGTTTCAC 59.187 38.462 0.00 0.00 34.21 3.18
3104 8186 4.200092 GGTCCTCTTCCATCACCAATTAC 58.800 47.826 0.00 0.00 0.00 1.89
3116 8198 7.110155 TGACATAAAAACTATGGTCCTCTTCC 58.890 38.462 0.00 0.00 0.00 3.46
3151 8235 6.751888 CGAATCATATTTTCCCCTGTTTGAAC 59.248 38.462 0.00 0.00 0.00 3.18
3207 8359 2.507452 CGGCTGATCTGCATGGGA 59.493 61.111 23.84 0.00 34.04 4.37
3210 8362 0.534427 ATGACCGGCTGATCTGCATG 60.534 55.000 23.84 16.42 34.04 4.06
3317 8469 2.558795 AGAGACATGTGTAGCGTCAGTT 59.441 45.455 1.15 0.00 31.92 3.16
3329 8481 5.540337 TCCTTTGACTTGAGTAGAGACATGT 59.460 40.000 0.00 0.00 0.00 3.21
3359 8511 2.642171 ACTCTGGATCAAGGTACCCA 57.358 50.000 8.74 0.00 0.00 4.51
3371 8523 6.265649 GCTGGTATGTTCTTAGATACTCTGGA 59.734 42.308 0.00 0.00 32.56 3.86
3383 8535 3.834813 TCTCAGTGAGCTGGTATGTTCTT 59.165 43.478 15.72 0.00 42.78 2.52
3425 8577 1.717032 ACTCCACTAGCAACACTCCA 58.283 50.000 0.00 0.00 0.00 3.86
3574 8727 4.322349 CCATTAAAGCTAGATCGGAGGGAG 60.322 50.000 0.00 0.00 0.00 4.30
3575 8728 3.578716 CCATTAAAGCTAGATCGGAGGGA 59.421 47.826 0.00 0.00 0.00 4.20
3576 8729 3.325135 ACCATTAAAGCTAGATCGGAGGG 59.675 47.826 0.00 0.00 0.00 4.30
3577 8730 4.608948 ACCATTAAAGCTAGATCGGAGG 57.391 45.455 0.00 0.00 0.00 4.30
3579 8732 6.726490 AGTAACCATTAAAGCTAGATCGGA 57.274 37.500 0.00 0.00 0.00 4.55
3580 8733 8.882415 TTTAGTAACCATTAAAGCTAGATCGG 57.118 34.615 0.00 0.00 0.00 4.18
3591 8744 5.239351 TGACGCAGCTTTAGTAACCATTAA 58.761 37.500 0.00 0.00 0.00 1.40
3593 8746 3.670625 TGACGCAGCTTTAGTAACCATT 58.329 40.909 0.00 0.00 0.00 3.16
3594 8747 3.328382 TGACGCAGCTTTAGTAACCAT 57.672 42.857 0.00 0.00 0.00 3.55
3595 8748 2.823924 TGACGCAGCTTTAGTAACCA 57.176 45.000 0.00 0.00 0.00 3.67
3596 8749 4.680171 AATTGACGCAGCTTTAGTAACC 57.320 40.909 0.00 0.00 0.00 2.85
3598 8751 7.753132 CCAAATTAATTGACGCAGCTTTAGTAA 59.247 33.333 0.39 0.00 41.85 2.24
3599 8752 7.119992 TCCAAATTAATTGACGCAGCTTTAGTA 59.880 33.333 0.39 0.00 41.85 1.82
3600 8753 6.072175 TCCAAATTAATTGACGCAGCTTTAGT 60.072 34.615 0.39 0.00 41.85 2.24
3601 8754 6.321717 TCCAAATTAATTGACGCAGCTTTAG 58.678 36.000 0.39 0.00 41.85 1.85
3605 8758 4.496341 CGATCCAAATTAATTGACGCAGCT 60.496 41.667 0.39 0.00 41.85 4.24
3606 8759 3.725740 CGATCCAAATTAATTGACGCAGC 59.274 43.478 0.39 0.00 41.85 5.25
3607 8760 4.035091 TCCGATCCAAATTAATTGACGCAG 59.965 41.667 0.39 0.00 41.85 5.18
3608 8761 3.942115 TCCGATCCAAATTAATTGACGCA 59.058 39.130 0.39 0.00 41.85 5.24
3610 8763 4.024048 CCCTCCGATCCAAATTAATTGACG 60.024 45.833 0.39 4.11 41.85 4.35
3611 8764 5.130350 TCCCTCCGATCCAAATTAATTGAC 58.870 41.667 0.39 0.00 41.85 3.18
3613 8766 5.133221 ACTCCCTCCGATCCAAATTAATTG 58.867 41.667 0.39 0.00 38.84 2.32
3614 8767 5.388599 ACTCCCTCCGATCCAAATTAATT 57.611 39.130 0.00 0.00 0.00 1.40
3615 8768 6.044404 ACATACTCCCTCCGATCCAAATTAAT 59.956 38.462 0.00 0.00 0.00 1.40
3616 8769 5.368523 ACATACTCCCTCCGATCCAAATTAA 59.631 40.000 0.00 0.00 0.00 1.40
3619 8800 3.318313 ACATACTCCCTCCGATCCAAAT 58.682 45.455 0.00 0.00 0.00 2.32
3621 8802 2.471815 ACATACTCCCTCCGATCCAA 57.528 50.000 0.00 0.00 0.00 3.53
3625 8806 8.656806 TGAATTATTTTACATACTCCCTCCGAT 58.343 33.333 0.00 0.00 0.00 4.18
3626 8807 8.025270 TGAATTATTTTACATACTCCCTCCGA 57.975 34.615 0.00 0.00 0.00 4.55
3738 8921 3.250040 GTGTTAATATCGCATCGCCCTTT 59.750 43.478 0.00 0.00 0.00 3.11
3774 8957 1.371389 GGTCGCGTCGTTCACTTCT 60.371 57.895 5.77 0.00 0.00 2.85
3801 8984 4.437239 CCAGCTCGTACATCTTCTCAATT 58.563 43.478 0.00 0.00 0.00 2.32
3804 8987 1.135139 GCCAGCTCGTACATCTTCTCA 59.865 52.381 0.00 0.00 0.00 3.27
3953 9136 2.555325 TGCTTTCTTGATTGCTCCACAG 59.445 45.455 0.00 0.00 0.00 3.66
3955 9138 3.648339 TTGCTTTCTTGATTGCTCCAC 57.352 42.857 0.00 0.00 0.00 4.02
3972 9155 1.602851 TGGCATGTTGTTGCATTTTGC 59.397 42.857 0.00 0.00 44.59 3.68
3975 9158 2.914695 ACTGGCATGTTGTTGCATTT 57.085 40.000 0.00 0.00 44.59 2.32
3989 9173 1.032014 TTGAAGTGAGGCAAACTGGC 58.968 50.000 0.00 0.00 44.10 4.85
4011 9195 4.524802 TCATCCATACCTCCATGCTTTT 57.475 40.909 0.00 0.00 0.00 2.27
4031 9219 0.930742 CGTAGCTCAGCGATCGGTTC 60.931 60.000 18.67 9.79 0.00 3.62
4038 9226 3.052620 GCAGACCGTAGCTCAGCGA 62.053 63.158 0.00 0.00 0.00 4.93
4052 9240 0.674581 CCCATTCACAGCTTCGCAGA 60.675 55.000 0.00 0.00 0.00 4.26
4057 9245 1.271597 ACAGGTCCCATTCACAGCTTC 60.272 52.381 0.00 0.00 0.00 3.86
4195 9383 6.925718 AGACACCATCGTATATTCAAGTCATG 59.074 38.462 0.00 0.00 0.00 3.07
4237 9425 3.834489 TGCTCTCCTCAGAAATCATCC 57.166 47.619 0.00 0.00 0.00 3.51
4275 9463 5.243730 TCATCATATACAGGAGAACGCATCA 59.756 40.000 0.00 0.00 0.00 3.07
4552 9745 2.154462 CGAAAGGAAGCCATGTCAAGT 58.846 47.619 0.00 0.00 0.00 3.16
4555 9748 1.347707 AGTCGAAAGGAAGCCATGTCA 59.652 47.619 0.00 0.00 0.00 3.58
4595 9788 1.659335 GAGTCAACGACGTCGGCAA 60.659 57.895 37.89 21.37 44.95 4.52
4602 9795 1.354337 CCTGCATGGAGTCAACGACG 61.354 60.000 13.65 0.00 37.67 5.12
4633 9826 3.739519 CGCTCTAGAAAGTTCCCCATCTG 60.740 52.174 0.00 0.00 0.00 2.90
4664 9857 1.188219 AGAGAGCCCGCTCAGAACAA 61.188 55.000 18.44 0.00 44.99 2.83
4671 9864 1.227205 CACATGAGAGAGCCCGCTC 60.227 63.158 8.70 8.70 43.03 5.03
4726 9919 1.888512 GTTGACATCAGGCACAACCAT 59.111 47.619 0.00 0.00 43.14 3.55
4784 9985 2.202797 CGATCTGACCCCAGCACG 60.203 66.667 0.00 0.00 40.20 5.34
4789 9990 1.679680 GATAACGACGATCTGACCCCA 59.320 52.381 0.00 0.00 0.00 4.96
4832 10033 2.819984 ATCGGAGCCGCAACCACATT 62.820 55.000 3.59 0.00 39.59 2.71
4842 10043 0.665670 CATCTGTAGCATCGGAGCCG 60.666 60.000 1.74 1.74 41.35 5.52
4861 10062 1.227497 CTCCAGAAGCTCGGGCATC 60.227 63.158 11.40 7.42 41.70 3.91
4894 10095 0.799917 CGACGGACAGATGCAGAGTG 60.800 60.000 0.00 0.00 0.00 3.51
4899 10100 2.153547 TTGCTCGACGGACAGATGCA 62.154 55.000 0.00 0.00 0.00 3.96
4902 10103 0.109086 CAGTTGCTCGACGGACAGAT 60.109 55.000 0.00 0.00 0.00 2.90
4916 10117 1.074951 GGGGGTCCACCTTCAGTTG 59.925 63.158 1.51 0.00 40.03 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.