Multiple sequence alignment - TraesCS4B01G314900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G314900 chr4B 100.000 4664 0 0 1 4664 604207723 604203060 0.000000e+00 8613.0
1 TraesCS4B01G314900 chr4A 91.335 3243 203 42 1479 4664 684663581 684660360 0.000000e+00 4361.0
2 TraesCS4B01G314900 chr4A 78.811 656 48 46 768 1362 684664294 684663669 1.600000e-94 357.0
3 TraesCS4B01G314900 chr4A 93.269 104 6 1 2309 2412 684662640 684662538 8.080000e-33 152.0
4 TraesCS4B01G314900 chr4D 89.051 2813 155 64 338 3110 478039955 478037256 0.000000e+00 3347.0
5 TraesCS4B01G314900 chr4D 93.206 1575 66 15 3103 4664 478033878 478032332 0.000000e+00 2278.0
6 TraesCS4B01G314900 chr4D 96.154 104 4 0 2309 2412 478037953 478037850 2.230000e-38 171.0
7 TraesCS4B01G314900 chr4D 80.952 105 15 5 4192 4291 503174938 503175042 1.390000e-10 78.7
8 TraesCS4B01G314900 chr7D 88.979 1361 110 20 1305 2651 96442548 96441214 0.000000e+00 1646.0
9 TraesCS4B01G314900 chr7D 86.400 1125 115 19 1302 2412 96352016 96350916 0.000000e+00 1195.0
10 TraesCS4B01G314900 chr7D 94.178 292 16 1 49 339 32648099 32648390 1.190000e-120 444.0
11 TraesCS4B01G314900 chr7D 93.603 297 18 1 44 339 82851430 82851134 4.280000e-120 442.0
12 TraesCS4B01G314900 chr7D 92.953 298 19 2 44 339 548022683 548022386 2.580000e-117 433.0
13 TraesCS4B01G314900 chr7D 93.636 220 14 0 2404 2623 96351015 96350796 3.480000e-86 329.0
14 TraesCS4B01G314900 chr7D 93.333 105 7 0 2404 2508 96441552 96441448 6.250000e-34 156.0
15 TraesCS4B01G314900 chr7D 93.269 104 7 0 2309 2412 96441465 96441362 2.250000e-33 154.0
16 TraesCS4B01G314900 chr2D 91.198 943 66 10 1696 2628 635129471 635130406 0.000000e+00 1266.0
17 TraesCS4B01G314900 chr2D 95.858 169 7 0 2624 2792 635135233 635135401 1.650000e-69 274.0
18 TraesCS4B01G314900 chr2D 94.286 105 6 0 2404 2508 635130091 635130195 1.340000e-35 161.0
19 TraesCS4B01G314900 chr2D 92.035 113 9 0 2300 2412 635130169 635130281 4.830000e-35 159.0
20 TraesCS4B01G314900 chr5A 85.185 864 88 16 1302 2151 179927994 179927157 0.000000e+00 850.0
21 TraesCS4B01G314900 chr2A 93.960 298 16 2 44 339 434580258 434579961 2.560000e-122 449.0
22 TraesCS4B01G314900 chr6B 93.624 298 17 2 44 339 680182599 680182302 1.190000e-120 444.0
23 TraesCS4B01G314900 chr1B 93.624 298 18 1 44 340 661438702 661438999 1.190000e-120 444.0
24 TraesCS4B01G314900 chr1B 93.289 298 18 2 44 339 683991877 683992174 5.540000e-119 438.0
25 TraesCS4B01G314900 chr3B 94.158 291 15 2 51 339 776503386 776503096 4.280000e-120 442.0
26 TraesCS4B01G314900 chr5D 93.289 298 16 2 44 340 446037988 446038282 1.990000e-118 436.0
27 TraesCS4B01G314900 chr2B 93.333 45 3 0 4057 4101 197682735 197682779 3.010000e-07 67.6
28 TraesCS4B01G314900 chr6A 100.000 30 0 0 4258 4287 37378687 37378716 6.520000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G314900 chr4B 604203060 604207723 4663 True 8613.000000 8613 100.000000 1 4664 1 chr4B.!!$R1 4663
1 TraesCS4B01G314900 chr4A 684660360 684664294 3934 True 1623.333333 4361 87.805000 768 4664 3 chr4A.!!$R1 3896
2 TraesCS4B01G314900 chr4D 478032332 478039955 7623 True 1932.000000 3347 92.803667 338 4664 3 chr4D.!!$R1 4326
3 TraesCS4B01G314900 chr7D 96350796 96352016 1220 True 762.000000 1195 90.018000 1302 2623 2 chr7D.!!$R3 1321
4 TraesCS4B01G314900 chr7D 96441214 96442548 1334 True 652.000000 1646 91.860333 1305 2651 3 chr7D.!!$R4 1346
5 TraesCS4B01G314900 chr2D 635129471 635130406 935 False 528.666667 1266 92.506333 1696 2628 3 chr2D.!!$F2 932
6 TraesCS4B01G314900 chr5A 179927157 179927994 837 True 850.000000 850 85.185000 1302 2151 1 chr5A.!!$R1 849

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
115 116 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.0 0.00 0.00 0.00 4.73 F
176 177 0.037232 CAGTGGGAGGAGACGTTTCC 60.037 60.0 17.16 17.16 37.52 3.13 F
1221 1300 0.037605 CGGGCCTCAAGAAAGTACGT 60.038 55.0 0.84 0.00 0.00 3.57 F
1744 1853 0.039798 ATTTGTGCGCAGTTGCTCAG 60.040 50.0 12.22 0.00 39.26 3.35 F
2245 2369 0.403655 TAGACATGGTGGCCTTGCAA 59.596 50.0 3.32 0.00 32.73 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1292 1372 0.886490 AACCAGAAGCTGCTGAACGG 60.886 55.0 24.34 8.89 38.14 4.44 R
1405 1490 0.924090 CGCCGCTGTTCTTAAGCTAG 59.076 55.0 0.00 0.00 38.57 3.42 R
2987 3119 0.114168 CAAAACACCCCCTCCCATGA 59.886 55.0 0.00 0.00 0.00 3.07 R
3001 3133 0.240945 CGTCCCATGCTGACCAAAAC 59.759 55.0 7.72 0.00 0.00 2.43 R
3954 7488 0.169672 CAGTTTGGAGCGCAGGAATG 59.830 55.0 11.47 0.00 0.00 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.447025 GAATGGGCGGAGGAGTCGG 62.447 68.421 0.00 0.00 0.00 4.79
39 40 3.691965 CGCGACGCTGATCAATCA 58.308 55.556 19.02 0.00 35.16 2.57
40 41 1.270968 CGCGACGCTGATCAATCAC 59.729 57.895 19.02 0.00 32.50 3.06
41 42 1.413008 CGCGACGCTGATCAATCACA 61.413 55.000 19.02 0.00 32.50 3.58
42 43 0.299895 GCGACGCTGATCAATCACAG 59.700 55.000 13.73 0.00 37.22 3.66
49 50 3.113325 CTGATCAATCACAGCAACGTG 57.887 47.619 0.00 0.00 38.29 4.49
50 51 2.481568 CTGATCAATCACAGCAACGTGT 59.518 45.455 0.00 0.00 38.12 4.49
52 53 0.943673 TCAATCACAGCAACGTGTGG 59.056 50.000 4.21 0.00 46.65 4.17
53 54 0.662619 CAATCACAGCAACGTGTGGT 59.337 50.000 4.21 1.06 46.65 4.16
54 55 1.388547 AATCACAGCAACGTGTGGTT 58.611 45.000 4.21 0.62 45.14 3.67
62 63 3.505835 AACGTGTGGTTGGATGGTT 57.494 47.368 0.00 0.00 37.50 3.67
63 64 2.642154 AACGTGTGGTTGGATGGTTA 57.358 45.000 0.00 0.00 37.50 2.85
64 65 2.178912 ACGTGTGGTTGGATGGTTAG 57.821 50.000 0.00 0.00 0.00 2.34
65 66 1.695242 ACGTGTGGTTGGATGGTTAGA 59.305 47.619 0.00 0.00 0.00 2.10
66 67 2.289444 ACGTGTGGTTGGATGGTTAGAG 60.289 50.000 0.00 0.00 0.00 2.43
67 68 2.711542 GTGTGGTTGGATGGTTAGAGG 58.288 52.381 0.00 0.00 0.00 3.69
68 69 1.633432 TGTGGTTGGATGGTTAGAGGG 59.367 52.381 0.00 0.00 0.00 4.30
69 70 1.913419 GTGGTTGGATGGTTAGAGGGA 59.087 52.381 0.00 0.00 0.00 4.20
70 71 1.913419 TGGTTGGATGGTTAGAGGGAC 59.087 52.381 0.00 0.00 0.00 4.46
72 73 2.092914 GGTTGGATGGTTAGAGGGACTG 60.093 54.545 0.00 0.00 41.55 3.51
73 74 2.572104 GTTGGATGGTTAGAGGGACTGT 59.428 50.000 0.00 0.00 41.55 3.55
74 75 2.187958 TGGATGGTTAGAGGGACTGTG 58.812 52.381 0.00 0.00 41.55 3.66
75 76 1.486726 GGATGGTTAGAGGGACTGTGG 59.513 57.143 0.00 0.00 41.55 4.17
76 77 2.188817 GATGGTTAGAGGGACTGTGGT 58.811 52.381 0.00 0.00 41.55 4.16
77 78 3.371965 GATGGTTAGAGGGACTGTGGTA 58.628 50.000 0.00 0.00 41.55 3.25
78 79 3.484953 TGGTTAGAGGGACTGTGGTAT 57.515 47.619 0.00 0.00 41.55 2.73
79 80 3.371965 TGGTTAGAGGGACTGTGGTATC 58.628 50.000 0.00 0.00 41.55 2.24
80 81 2.699321 GGTTAGAGGGACTGTGGTATCC 59.301 54.545 0.00 0.00 41.55 2.59
90 91 3.844063 TGGTATCCCCAACCCACC 58.156 61.111 0.00 0.00 41.50 4.61
91 92 1.151565 TGGTATCCCCAACCCACCA 60.152 57.895 0.00 0.00 41.50 4.17
92 93 1.211567 TGGTATCCCCAACCCACCAG 61.212 60.000 0.00 0.00 41.50 4.00
93 94 1.613061 GTATCCCCAACCCACCAGG 59.387 63.158 0.00 0.00 43.78 4.45
109 110 3.363787 AGGGTTCAAATCCTGGTGC 57.636 52.632 0.00 0.00 38.36 5.01
110 111 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
111 112 1.177401 GGGTTCAAATCCTGGTGCTC 58.823 55.000 0.00 0.00 0.00 4.26
112 113 0.804989 GGTTCAAATCCTGGTGCTCG 59.195 55.000 0.00 0.00 0.00 5.03
113 114 0.169009 GTTCAAATCCTGGTGCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
114 115 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
115 116 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
116 117 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
117 118 1.203052 CAAATCCTGGTGCTCGCATTT 59.797 47.619 0.00 0.00 0.00 2.32
118 119 2.418368 AATCCTGGTGCTCGCATTTA 57.582 45.000 0.00 0.00 0.00 1.40
119 120 2.645838 ATCCTGGTGCTCGCATTTAT 57.354 45.000 0.00 0.00 0.00 1.40
120 121 2.418368 TCCTGGTGCTCGCATTTATT 57.582 45.000 0.00 0.00 0.00 1.40
121 122 2.722094 TCCTGGTGCTCGCATTTATTT 58.278 42.857 0.00 0.00 0.00 1.40
122 123 2.682856 TCCTGGTGCTCGCATTTATTTC 59.317 45.455 0.00 0.00 0.00 2.17
123 124 2.684881 CCTGGTGCTCGCATTTATTTCT 59.315 45.455 0.00 0.00 0.00 2.52
124 125 3.488047 CCTGGTGCTCGCATTTATTTCTG 60.488 47.826 0.00 0.00 0.00 3.02
125 126 2.423185 TGGTGCTCGCATTTATTTCTGG 59.577 45.455 0.00 0.00 0.00 3.86
126 127 2.682856 GGTGCTCGCATTTATTTCTGGA 59.317 45.455 0.00 0.00 0.00 3.86
127 128 3.316308 GGTGCTCGCATTTATTTCTGGAT 59.684 43.478 0.00 0.00 0.00 3.41
128 129 4.515191 GGTGCTCGCATTTATTTCTGGATA 59.485 41.667 0.00 0.00 0.00 2.59
129 130 5.182001 GGTGCTCGCATTTATTTCTGGATAT 59.818 40.000 0.00 0.00 0.00 1.63
130 131 6.371548 GGTGCTCGCATTTATTTCTGGATATA 59.628 38.462 0.00 0.00 0.00 0.86
131 132 7.066284 GGTGCTCGCATTTATTTCTGGATATAT 59.934 37.037 0.00 0.00 0.00 0.86
132 133 8.454106 GTGCTCGCATTTATTTCTGGATATATT 58.546 33.333 0.00 0.00 0.00 1.28
133 134 9.013229 TGCTCGCATTTATTTCTGGATATATTT 57.987 29.630 0.00 0.00 0.00 1.40
134 135 9.495754 GCTCGCATTTATTTCTGGATATATTTC 57.504 33.333 0.00 0.00 0.00 2.17
137 138 9.778993 CGCATTTATTTCTGGATATATTTCAGG 57.221 33.333 13.57 1.82 0.00 3.86
144 145 8.621532 TTTCTGGATATATTTCAGGATTTCCG 57.378 34.615 13.57 0.00 42.08 4.30
145 146 6.711277 TCTGGATATATTTCAGGATTTCCGG 58.289 40.000 0.00 0.00 42.08 5.14
146 147 6.272324 TCTGGATATATTTCAGGATTTCCGGT 59.728 38.462 0.00 0.00 42.08 5.28
147 148 6.237901 TGGATATATTTCAGGATTTCCGGTG 58.762 40.000 0.00 0.00 42.08 4.94
148 149 6.043822 TGGATATATTTCAGGATTTCCGGTGA 59.956 38.462 0.00 0.00 42.08 4.02
149 150 7.112779 GGATATATTTCAGGATTTCCGGTGAT 58.887 38.462 0.00 0.00 42.08 3.06
150 151 7.066284 GGATATATTTCAGGATTTCCGGTGATG 59.934 40.741 0.00 0.00 42.08 3.07
151 152 1.750193 TTCAGGATTTCCGGTGATGC 58.250 50.000 0.00 2.01 42.08 3.91
152 153 0.461870 TCAGGATTTCCGGTGATGCG 60.462 55.000 0.00 0.00 42.08 4.73
153 154 1.819632 AGGATTTCCGGTGATGCGC 60.820 57.895 0.00 0.00 42.08 6.09
154 155 2.112198 GGATTTCCGGTGATGCGCA 61.112 57.895 14.96 14.96 0.00 6.09
155 156 1.447317 GGATTTCCGGTGATGCGCAT 61.447 55.000 25.66 25.66 0.00 4.73
156 157 0.381801 GATTTCCGGTGATGCGCATT 59.618 50.000 26.12 8.31 0.00 3.56
157 158 0.381801 ATTTCCGGTGATGCGCATTC 59.618 50.000 26.12 19.54 0.00 2.67
158 159 0.957888 TTTCCGGTGATGCGCATTCA 60.958 50.000 26.12 19.83 0.00 2.57
159 160 1.368345 TTCCGGTGATGCGCATTCAG 61.368 55.000 26.12 19.44 0.00 3.02
160 161 2.108514 CCGGTGATGCGCATTCAGT 61.109 57.895 26.12 0.98 0.00 3.41
161 162 1.061411 CGGTGATGCGCATTCAGTG 59.939 57.895 26.12 13.82 0.00 3.66
162 163 1.430632 GGTGATGCGCATTCAGTGG 59.569 57.895 26.12 0.00 0.00 4.00
163 164 1.430632 GTGATGCGCATTCAGTGGG 59.569 57.895 26.12 0.00 43.21 4.61
164 165 1.026182 GTGATGCGCATTCAGTGGGA 61.026 55.000 26.12 0.00 43.02 4.37
165 166 0.745486 TGATGCGCATTCAGTGGGAG 60.745 55.000 26.12 0.00 43.02 4.30
166 167 1.442526 GATGCGCATTCAGTGGGAGG 61.443 60.000 26.12 0.00 43.02 4.30
167 168 1.913951 ATGCGCATTCAGTGGGAGGA 61.914 55.000 19.28 0.00 43.02 3.71
168 169 1.817099 GCGCATTCAGTGGGAGGAG 60.817 63.158 0.30 0.00 43.02 3.69
169 170 1.900351 CGCATTCAGTGGGAGGAGA 59.100 57.895 0.00 0.00 43.02 3.71
170 171 0.460987 CGCATTCAGTGGGAGGAGAC 60.461 60.000 0.00 0.00 43.02 3.36
171 172 0.460987 GCATTCAGTGGGAGGAGACG 60.461 60.000 0.00 0.00 0.00 4.18
172 173 0.898320 CATTCAGTGGGAGGAGACGT 59.102 55.000 0.00 0.00 0.00 4.34
173 174 1.276421 CATTCAGTGGGAGGAGACGTT 59.724 52.381 0.00 0.00 0.00 3.99
174 175 1.420430 TTCAGTGGGAGGAGACGTTT 58.580 50.000 0.00 0.00 0.00 3.60
175 176 0.966920 TCAGTGGGAGGAGACGTTTC 59.033 55.000 0.00 0.00 0.00 2.78
176 177 0.037232 CAGTGGGAGGAGACGTTTCC 60.037 60.000 17.16 17.16 37.52 3.13
177 178 0.471211 AGTGGGAGGAGACGTTTCCA 60.471 55.000 25.51 4.24 39.84 3.53
178 179 0.613777 GTGGGAGGAGACGTTTCCAT 59.386 55.000 25.51 11.65 39.84 3.41
179 180 0.902531 TGGGAGGAGACGTTTCCATC 59.097 55.000 25.51 18.39 39.84 3.51
180 181 0.902531 GGGAGGAGACGTTTCCATCA 59.097 55.000 25.51 0.00 39.84 3.07
181 182 1.278127 GGGAGGAGACGTTTCCATCAA 59.722 52.381 25.51 0.00 39.84 2.57
182 183 2.347731 GGAGGAGACGTTTCCATCAAC 58.652 52.381 25.51 11.46 39.84 3.18
190 191 0.442699 GTTTCCATCAACGACGAGGC 59.557 55.000 0.00 0.00 0.00 4.70
191 192 1.011968 TTTCCATCAACGACGAGGCG 61.012 55.000 0.00 0.00 37.29 5.52
192 193 3.554692 CCATCAACGACGAGGCGC 61.555 66.667 0.00 0.00 33.86 6.53
193 194 3.554692 CATCAACGACGAGGCGCC 61.555 66.667 21.89 21.89 33.86 6.53
194 195 3.760035 ATCAACGACGAGGCGCCT 61.760 61.111 33.48 33.48 33.86 5.52
195 196 2.412323 ATCAACGACGAGGCGCCTA 61.412 57.895 32.97 12.13 33.86 3.93
196 197 2.609183 ATCAACGACGAGGCGCCTAC 62.609 60.000 32.97 22.05 33.86 3.18
197 198 4.471726 AACGACGAGGCGCCTACG 62.472 66.667 32.91 32.91 44.07 3.51
199 200 3.950254 CGACGAGGCGCCTACGAT 61.950 66.667 37.37 26.68 43.93 3.73
200 201 2.353607 GACGAGGCGCCTACGATG 60.354 66.667 37.37 24.97 43.93 3.84
201 202 2.827190 ACGAGGCGCCTACGATGA 60.827 61.111 37.37 0.00 43.93 2.92
202 203 2.353607 CGAGGCGCCTACGATGAC 60.354 66.667 32.97 14.51 43.93 3.06
203 204 2.835705 CGAGGCGCCTACGATGACT 61.836 63.158 32.97 3.02 43.93 3.41
204 205 1.437986 GAGGCGCCTACGATGACTT 59.562 57.895 32.97 2.04 43.93 3.01
205 206 0.595310 GAGGCGCCTACGATGACTTC 60.595 60.000 32.97 9.38 43.93 3.01
220 221 6.861158 CGATGACTTCGTAAATCTCAAGATG 58.139 40.000 2.72 0.00 43.01 2.90
221 222 6.693113 CGATGACTTCGTAAATCTCAAGATGA 59.307 38.462 2.72 0.00 43.01 2.92
222 223 7.380870 CGATGACTTCGTAAATCTCAAGATGAT 59.619 37.037 2.72 0.00 43.01 2.45
223 224 9.684448 GATGACTTCGTAAATCTCAAGATGATA 57.316 33.333 0.00 0.00 34.49 2.15
225 226 9.468532 TGACTTCGTAAATCTCAAGATGATATG 57.531 33.333 0.00 0.00 34.49 1.78
226 227 8.304202 ACTTCGTAAATCTCAAGATGATATGC 57.696 34.615 0.00 0.00 34.49 3.14
227 228 7.386299 ACTTCGTAAATCTCAAGATGATATGCC 59.614 37.037 0.00 0.00 34.49 4.40
228 229 5.863935 TCGTAAATCTCAAGATGATATGCCG 59.136 40.000 0.00 0.00 34.49 5.69
229 230 5.062683 CGTAAATCTCAAGATGATATGCCGG 59.937 44.000 0.00 0.00 34.49 6.13
230 231 2.462456 TCTCAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
231 232 1.973515 TCTCAAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
232 233 2.028658 TCTCAAGATGATATGCCGGCTC 60.029 50.000 29.70 17.89 0.00 4.70
233 234 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
234 235 2.303890 TCAAGATGATATGCCGGCTCAT 59.696 45.455 29.70 27.00 32.46 2.90
235 236 3.079578 CAAGATGATATGCCGGCTCATT 58.920 45.455 29.70 12.21 30.00 2.57
236 237 2.983229 AGATGATATGCCGGCTCATTC 58.017 47.619 29.70 19.41 30.00 2.67
237 238 2.570752 AGATGATATGCCGGCTCATTCT 59.429 45.455 29.70 21.04 30.00 2.40
238 239 2.936919 TGATATGCCGGCTCATTCTT 57.063 45.000 29.70 5.10 0.00 2.52
239 240 3.213206 TGATATGCCGGCTCATTCTTT 57.787 42.857 29.70 3.35 0.00 2.52
240 241 3.141398 TGATATGCCGGCTCATTCTTTC 58.859 45.455 29.70 12.91 0.00 2.62
241 242 1.581934 TATGCCGGCTCATTCTTTCG 58.418 50.000 29.70 0.00 0.00 3.46
242 243 1.097547 ATGCCGGCTCATTCTTTCGG 61.098 55.000 29.70 0.00 43.13 4.30
243 244 1.449601 GCCGGCTCATTCTTTCGGA 60.450 57.895 22.15 0.00 42.94 4.55
244 245 1.432270 GCCGGCTCATTCTTTCGGAG 61.432 60.000 22.15 0.00 42.94 4.63
245 246 0.175760 CCGGCTCATTCTTTCGGAGA 59.824 55.000 0.00 0.00 42.94 3.71
246 247 1.202580 CCGGCTCATTCTTTCGGAGAT 60.203 52.381 0.00 0.00 42.94 2.75
247 248 1.863454 CGGCTCATTCTTTCGGAGATG 59.137 52.381 0.00 0.00 35.04 2.90
248 249 1.601430 GGCTCATTCTTTCGGAGATGC 59.399 52.381 0.00 0.00 35.04 3.91
249 250 2.559440 GCTCATTCTTTCGGAGATGCT 58.441 47.619 0.00 0.00 35.04 3.79
250 251 2.543430 GCTCATTCTTTCGGAGATGCTC 59.457 50.000 0.00 0.00 35.04 4.26
251 252 3.790091 CTCATTCTTTCGGAGATGCTCA 58.210 45.455 0.00 0.00 35.04 4.26
252 253 4.378774 CTCATTCTTTCGGAGATGCTCAT 58.621 43.478 0.00 0.00 35.04 2.90
253 254 5.535753 TCATTCTTTCGGAGATGCTCATA 57.464 39.130 0.00 0.00 35.04 2.15
254 255 5.536260 TCATTCTTTCGGAGATGCTCATAG 58.464 41.667 0.00 0.00 35.04 2.23
255 256 4.327982 TTCTTTCGGAGATGCTCATAGG 57.672 45.455 0.00 0.00 35.04 2.57
256 257 2.630098 TCTTTCGGAGATGCTCATAGGG 59.370 50.000 0.00 0.00 35.04 3.53
257 258 1.342074 TTCGGAGATGCTCATAGGGG 58.658 55.000 0.00 0.00 35.04 4.79
258 259 0.188587 TCGGAGATGCTCATAGGGGT 59.811 55.000 0.00 0.00 31.08 4.95
259 260 1.427753 TCGGAGATGCTCATAGGGGTA 59.572 52.381 0.00 0.00 31.08 3.69
260 261 1.821753 CGGAGATGCTCATAGGGGTAG 59.178 57.143 0.00 0.00 31.08 3.18
261 262 2.183679 GGAGATGCTCATAGGGGTAGG 58.816 57.143 0.00 0.00 31.08 3.18
262 263 2.183679 GAGATGCTCATAGGGGTAGGG 58.816 57.143 0.00 0.00 0.00 3.53
263 264 1.509961 AGATGCTCATAGGGGTAGGGT 59.490 52.381 0.00 0.00 0.00 4.34
264 265 2.728013 AGATGCTCATAGGGGTAGGGTA 59.272 50.000 0.00 0.00 0.00 3.69
265 266 3.341280 AGATGCTCATAGGGGTAGGGTAT 59.659 47.826 0.00 0.00 0.00 2.73
266 267 2.902608 TGCTCATAGGGGTAGGGTATG 58.097 52.381 0.00 0.00 0.00 2.39
267 268 1.555533 GCTCATAGGGGTAGGGTATGC 59.444 57.143 0.00 0.00 0.00 3.14
268 269 1.825474 CTCATAGGGGTAGGGTATGCG 59.175 57.143 0.00 0.00 0.00 4.73
269 270 1.148446 TCATAGGGGTAGGGTATGCGT 59.852 52.381 0.00 0.00 0.00 5.24
270 271 1.275291 CATAGGGGTAGGGTATGCGTG 59.725 57.143 0.00 0.00 0.00 5.34
271 272 0.262580 TAGGGGTAGGGTATGCGTGT 59.737 55.000 0.00 0.00 0.00 4.49
272 273 1.145377 GGGGTAGGGTATGCGTGTG 59.855 63.158 0.00 0.00 0.00 3.82
273 274 1.619807 GGGGTAGGGTATGCGTGTGT 61.620 60.000 0.00 0.00 0.00 3.72
274 275 0.461339 GGGTAGGGTATGCGTGTGTG 60.461 60.000 0.00 0.00 0.00 3.82
275 276 1.087771 GGTAGGGTATGCGTGTGTGC 61.088 60.000 0.00 0.00 0.00 4.57
276 277 1.153726 TAGGGTATGCGTGTGTGCG 60.154 57.895 0.00 0.00 37.81 5.34
277 278 1.879737 TAGGGTATGCGTGTGTGCGT 61.880 55.000 0.00 0.00 37.81 5.24
278 279 2.322081 GGGTATGCGTGTGTGCGTT 61.322 57.895 0.00 0.00 37.81 4.84
279 280 1.131826 GGTATGCGTGTGTGCGTTC 59.868 57.895 0.00 0.00 37.81 3.95
280 281 1.561717 GGTATGCGTGTGTGCGTTCA 61.562 55.000 0.00 0.00 37.81 3.18
281 282 0.442310 GTATGCGTGTGTGCGTTCAT 59.558 50.000 0.00 0.00 37.81 2.57
282 283 1.656594 GTATGCGTGTGTGCGTTCATA 59.343 47.619 0.00 0.00 37.81 2.15
283 284 0.721154 ATGCGTGTGTGCGTTCATAG 59.279 50.000 0.00 0.00 37.81 2.23
284 285 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
285 286 1.966493 GCGTGTGTGCGTTCATAGGG 61.966 60.000 0.00 0.00 0.00 3.53
286 287 1.794222 GTGTGTGCGTTCATAGGGC 59.206 57.895 0.00 0.00 0.00 5.19
287 288 1.739929 TGTGTGCGTTCATAGGGCG 60.740 57.895 0.00 0.00 0.00 6.13
288 289 1.447140 GTGTGCGTTCATAGGGCGA 60.447 57.895 0.00 0.00 0.00 5.54
289 290 1.153647 TGTGCGTTCATAGGGCGAG 60.154 57.895 0.00 0.00 0.00 5.03
290 291 1.153628 GTGCGTTCATAGGGCGAGT 60.154 57.895 0.00 0.00 0.00 4.18
291 292 1.153647 TGCGTTCATAGGGCGAGTG 60.154 57.895 0.00 0.00 0.00 3.51
292 293 1.153628 GCGTTCATAGGGCGAGTGT 60.154 57.895 0.00 0.00 0.00 3.55
293 294 0.101759 GCGTTCATAGGGCGAGTGTA 59.898 55.000 0.00 0.00 0.00 2.90
294 295 1.269621 GCGTTCATAGGGCGAGTGTAT 60.270 52.381 0.00 0.00 0.00 2.29
295 296 2.394708 CGTTCATAGGGCGAGTGTATG 58.605 52.381 0.00 0.00 0.00 2.39
296 297 2.135933 GTTCATAGGGCGAGTGTATGC 58.864 52.381 0.00 0.00 0.00 3.14
297 298 0.313987 TCATAGGGCGAGTGTATGCG 59.686 55.000 0.00 0.00 0.00 4.73
302 303 3.179265 GCGAGTGTATGCGCGTGT 61.179 61.111 13.61 0.00 43.96 4.49
303 304 1.870458 GCGAGTGTATGCGCGTGTA 60.870 57.895 13.61 0.00 43.96 2.90
304 305 1.206745 GCGAGTGTATGCGCGTGTAT 61.207 55.000 13.61 4.63 43.96 2.29
305 306 1.922880 GCGAGTGTATGCGCGTGTATA 60.923 52.381 13.61 2.40 43.96 1.47
306 307 2.581637 CGAGTGTATGCGCGTGTATAT 58.418 47.619 13.61 0.00 0.00 0.86
307 308 2.338520 CGAGTGTATGCGCGTGTATATG 59.661 50.000 13.61 0.00 0.00 1.78
308 309 3.561503 GAGTGTATGCGCGTGTATATGA 58.438 45.455 13.61 0.00 0.00 2.15
309 310 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
310 311 2.090658 GTGTATGCGCGTGTATATGAGC 59.909 50.000 13.61 0.41 38.85 4.26
313 314 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
314 315 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
315 316 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
316 317 0.111089 GCGTGTATATGAGCGCTTGC 60.111 55.000 13.26 0.00 45.48 4.01
317 318 0.159554 CGTGTATATGAGCGCTTGCG 59.840 55.000 13.26 10.90 45.69 4.85
318 319 1.209128 GTGTATATGAGCGCTTGCGT 58.791 50.000 13.26 3.24 45.69 5.24
319 320 1.190323 GTGTATATGAGCGCTTGCGTC 59.810 52.381 13.26 12.36 45.69 5.19
320 321 1.067060 TGTATATGAGCGCTTGCGTCT 59.933 47.619 13.26 13.17 45.69 4.18
321 322 1.453524 GTATATGAGCGCTTGCGTCTG 59.546 52.381 13.26 0.00 45.69 3.51
322 323 0.179100 ATATGAGCGCTTGCGTCTGT 60.179 50.000 13.26 7.66 45.69 3.41
323 324 0.454196 TATGAGCGCTTGCGTCTGTA 59.546 50.000 13.26 6.26 45.69 2.74
324 325 1.078759 ATGAGCGCTTGCGTCTGTAC 61.079 55.000 13.26 0.00 45.69 2.90
325 326 1.444553 GAGCGCTTGCGTCTGTACT 60.445 57.895 13.26 3.73 45.69 2.73
326 327 1.678269 GAGCGCTTGCGTCTGTACTG 61.678 60.000 13.26 0.00 45.69 2.74
327 328 1.733041 GCGCTTGCGTCTGTACTGA 60.733 57.895 16.38 0.00 0.00 3.41
328 329 1.078759 GCGCTTGCGTCTGTACTGAT 61.079 55.000 16.38 0.00 0.00 2.90
329 330 0.642291 CGCTTGCGTCTGTACTGATG 59.358 55.000 15.57 15.57 0.00 3.07
330 331 1.714794 GCTTGCGTCTGTACTGATGT 58.285 50.000 19.48 0.00 0.00 3.06
331 332 2.069273 GCTTGCGTCTGTACTGATGTT 58.931 47.619 19.48 0.00 0.00 2.71
332 333 3.250744 GCTTGCGTCTGTACTGATGTTA 58.749 45.455 19.48 9.40 0.00 2.41
333 334 3.678072 GCTTGCGTCTGTACTGATGTTAA 59.322 43.478 19.48 14.64 0.00 2.01
334 335 4.151689 GCTTGCGTCTGTACTGATGTTAAA 59.848 41.667 19.48 12.39 0.00 1.52
335 336 5.333798 GCTTGCGTCTGTACTGATGTTAAAA 60.334 40.000 19.48 10.58 0.00 1.52
336 337 6.606234 TTGCGTCTGTACTGATGTTAAAAA 57.394 33.333 19.48 7.53 0.00 1.94
372 373 0.680618 TTCTCGGGAGGCGTTGTTTA 59.319 50.000 0.00 0.00 0.00 2.01
379 380 3.083293 GGGAGGCGTTGTTTATTTGGTA 58.917 45.455 0.00 0.00 0.00 3.25
383 384 2.416296 GGCGTTGTTTATTTGGTAGGGC 60.416 50.000 0.00 0.00 0.00 5.19
384 385 2.416296 GCGTTGTTTATTTGGTAGGGCC 60.416 50.000 0.00 0.00 37.90 5.80
417 418 3.297391 GGGATCTTGCCGACAGATC 57.703 57.895 8.99 8.99 38.10 2.75
418 419 0.465705 GGGATCTTGCCGACAGATCA 59.534 55.000 15.89 0.00 39.94 2.92
419 420 1.071385 GGGATCTTGCCGACAGATCAT 59.929 52.381 15.89 0.00 39.94 2.45
424 425 4.685169 TCTTGCCGACAGATCATTTTTC 57.315 40.909 0.00 0.00 0.00 2.29
427 428 1.405463 GCCGACAGATCATTTTTCCCC 59.595 52.381 0.00 0.00 0.00 4.81
428 429 2.024414 CCGACAGATCATTTTTCCCCC 58.976 52.381 0.00 0.00 0.00 5.40
430 431 2.945668 CGACAGATCATTTTTCCCCCTC 59.054 50.000 0.00 0.00 0.00 4.30
473 474 6.404623 GCACTATGATATTGCAACTTTGTGGA 60.405 38.462 0.00 0.00 34.82 4.02
509 510 2.028020 GGACGGATCCACAGAAAACTCT 60.028 50.000 13.41 0.00 45.47 3.24
510 511 2.996621 GACGGATCCACAGAAAACTCTG 59.003 50.000 13.41 0.59 43.03 3.35
524 525 4.492160 TCTGCATCGTCGGCCGTC 62.492 66.667 27.15 19.73 37.94 4.79
531 532 0.601841 ATCGTCGGCCGTCAGTTTTT 60.602 50.000 27.15 0.03 37.94 1.94
532 533 1.083015 CGTCGGCCGTCAGTTTTTG 60.083 57.895 27.15 0.44 0.00 2.44
533 534 1.370051 GTCGGCCGTCAGTTTTTGC 60.370 57.895 27.15 0.06 0.00 3.68
537 538 1.487482 GGCCGTCAGTTTTTGCTTTC 58.513 50.000 0.00 0.00 0.00 2.62
539 540 2.481276 GGCCGTCAGTTTTTGCTTTCTT 60.481 45.455 0.00 0.00 0.00 2.52
540 541 3.186909 GCCGTCAGTTTTTGCTTTCTTT 58.813 40.909 0.00 0.00 0.00 2.52
541 542 4.356289 GCCGTCAGTTTTTGCTTTCTTTA 58.644 39.130 0.00 0.00 0.00 1.85
542 543 4.982295 GCCGTCAGTTTTTGCTTTCTTTAT 59.018 37.500 0.00 0.00 0.00 1.40
543 544 6.146898 GCCGTCAGTTTTTGCTTTCTTTATA 58.853 36.000 0.00 0.00 0.00 0.98
556 557 4.863152 TTCTTTATAAAACGTAGGCCGC 57.137 40.909 0.00 0.00 41.42 6.53
564 565 4.814294 CGTAGGCCGCACTCCACC 62.814 72.222 0.00 0.00 0.00 4.61
570 571 4.394712 CCGCACTCCACCCAGACC 62.395 72.222 0.00 0.00 0.00 3.85
576 577 0.771755 ACTCCACCCAGACCTTTTCC 59.228 55.000 0.00 0.00 0.00 3.13
585 586 2.158310 CCAGACCTTTTCCCCTTTTCCT 60.158 50.000 0.00 0.00 0.00 3.36
586 587 3.576861 CAGACCTTTTCCCCTTTTCCTT 58.423 45.455 0.00 0.00 0.00 3.36
587 588 3.321968 CAGACCTTTTCCCCTTTTCCTTG 59.678 47.826 0.00 0.00 0.00 3.61
588 589 2.037251 GACCTTTTCCCCTTTTCCTTGC 59.963 50.000 0.00 0.00 0.00 4.01
589 590 1.000843 CCTTTTCCCCTTTTCCTTGCG 59.999 52.381 0.00 0.00 0.00 4.85
590 591 0.391228 TTTTCCCCTTTTCCTTGCGC 59.609 50.000 0.00 0.00 0.00 6.09
591 592 1.801309 TTTCCCCTTTTCCTTGCGCG 61.801 55.000 0.00 0.00 0.00 6.86
592 593 4.419939 CCCCTTTTCCTTGCGCGC 62.420 66.667 27.26 27.26 0.00 6.86
593 594 3.669344 CCCTTTTCCTTGCGCGCA 61.669 61.111 33.09 33.09 0.00 6.09
594 595 2.334653 CCTTTTCCTTGCGCGCAA 59.665 55.556 40.42 40.42 0.00 4.85
595 596 2.016165 CCTTTTCCTTGCGCGCAAC 61.016 57.895 40.23 9.10 0.00 4.17
596 597 2.016165 CTTTTCCTTGCGCGCAACC 61.016 57.895 40.23 8.68 0.00 3.77
597 598 3.815569 TTTTCCTTGCGCGCAACCG 62.816 57.895 40.23 30.90 37.57 4.44
601 602 4.012895 CTTGCGCGCAACCGAACT 62.013 61.111 40.23 0.00 36.29 3.01
602 603 3.911155 CTTGCGCGCAACCGAACTC 62.911 63.158 40.23 4.03 36.29 3.01
619 620 0.390860 CTCGGCGAGAGGATTTCCAT 59.609 55.000 32.07 0.00 43.20 3.41
621 622 0.104855 CGGCGAGAGGATTTCCATCA 59.895 55.000 0.00 0.00 38.89 3.07
624 625 3.217626 GGCGAGAGGATTTCCATCAAAT 58.782 45.455 0.00 0.00 37.41 2.32
646 647 5.704217 TTTTGCCACAACAAAATCGTAAC 57.296 34.783 0.00 0.00 42.88 2.50
650 651 4.800993 TGCCACAACAAAATCGTAACAAAG 59.199 37.500 0.00 0.00 0.00 2.77
655 656 6.252441 CACAACAAAATCGTAACAAAGCAGAA 59.748 34.615 0.00 0.00 0.00 3.02
662 663 3.244345 TCGTAACAAAGCAGAAACGTGAG 59.756 43.478 0.00 0.00 0.00 3.51
663 664 2.475200 AACAAAGCAGAAACGTGAGC 57.525 45.000 0.00 0.00 0.00 4.26
676 677 3.580794 ACGTGAGCGAACTTTGTAAAC 57.419 42.857 0.00 0.00 42.00 2.01
677 678 2.931325 ACGTGAGCGAACTTTGTAAACA 59.069 40.909 0.00 0.00 42.00 2.83
678 679 3.371591 ACGTGAGCGAACTTTGTAAACAA 59.628 39.130 0.00 0.00 42.00 2.83
679 680 4.142859 ACGTGAGCGAACTTTGTAAACAAA 60.143 37.500 7.95 7.95 41.20 2.83
681 682 5.108780 CGTGAGCGAACTTTGTAAACAAATG 60.109 40.000 8.62 6.22 41.58 2.32
682 683 5.741982 GTGAGCGAACTTTGTAAACAAATGT 59.258 36.000 8.62 6.75 43.92 2.71
685 686 7.329717 TGAGCGAACTTTGTAAACAAATGTTTT 59.670 29.630 15.92 0.00 45.07 2.43
686 687 7.671827 AGCGAACTTTGTAAACAAATGTTTTC 58.328 30.769 15.92 11.78 45.07 2.29
687 688 6.617923 GCGAACTTTGTAAACAAATGTTTTCG 59.382 34.615 15.92 21.91 45.07 3.46
689 690 7.625309 CGAACTTTGTAAACAAATGTTTTCGTG 59.375 33.333 15.92 8.22 45.07 4.35
690 691 8.522178 AACTTTGTAAACAAATGTTTTCGTGA 57.478 26.923 15.92 0.00 45.07 4.35
691 692 8.168681 ACTTTGTAAACAAATGTTTTCGTGAG 57.831 30.769 15.92 11.76 45.07 3.51
692 693 8.024285 ACTTTGTAAACAAATGTTTTCGTGAGA 58.976 29.630 15.92 0.00 45.07 3.27
693 694 7.962934 TTGTAAACAAATGTTTTCGTGAGAG 57.037 32.000 15.92 0.00 45.07 3.20
694 695 6.491394 TGTAAACAAATGTTTTCGTGAGAGG 58.509 36.000 15.92 0.00 45.07 3.69
695 696 5.828299 AAACAAATGTTTTCGTGAGAGGA 57.172 34.783 5.72 0.00 45.07 3.71
696 697 5.828299 AACAAATGTTTTCGTGAGAGGAA 57.172 34.783 0.00 0.00 43.69 3.36
699 700 6.208644 ACAAATGTTTTCGTGAGAGGAAATG 58.791 36.000 0.00 0.00 43.69 2.32
701 702 6.391227 AATGTTTTCGTGAGAGGAAATGTT 57.609 33.333 0.00 0.00 43.69 2.71
702 703 5.168526 TGTTTTCGTGAGAGGAAATGTTG 57.831 39.130 0.00 0.00 43.69 3.33
703 704 4.638421 TGTTTTCGTGAGAGGAAATGTTGT 59.362 37.500 0.00 0.00 43.69 3.32
704 705 5.205565 GTTTTCGTGAGAGGAAATGTTGTC 58.794 41.667 0.00 0.00 43.69 3.18
705 706 3.744238 TCGTGAGAGGAAATGTTGTCA 57.256 42.857 0.00 0.00 34.84 3.58
706 707 4.066646 TCGTGAGAGGAAATGTTGTCAA 57.933 40.909 0.00 0.00 34.84 3.18
707 708 4.447290 TCGTGAGAGGAAATGTTGTCAAA 58.553 39.130 0.00 0.00 34.84 2.69
708 709 4.878971 TCGTGAGAGGAAATGTTGTCAAAA 59.121 37.500 0.00 0.00 34.84 2.44
709 710 5.530915 TCGTGAGAGGAAATGTTGTCAAAAT 59.469 36.000 0.00 0.00 34.84 1.82
710 711 6.039270 TCGTGAGAGGAAATGTTGTCAAAATT 59.961 34.615 0.00 0.00 34.84 1.82
711 712 6.697019 CGTGAGAGGAAATGTTGTCAAAATTT 59.303 34.615 12.65 12.65 0.00 1.82
712 713 7.222611 CGTGAGAGGAAATGTTGTCAAAATTTT 59.777 33.333 13.76 0.00 0.00 1.82
713 714 8.542953 GTGAGAGGAAATGTTGTCAAAATTTTC 58.457 33.333 13.76 12.13 0.00 2.29
714 715 8.477256 TGAGAGGAAATGTTGTCAAAATTTTCT 58.523 29.630 18.48 18.48 32.86 2.52
715 716 9.317936 GAGAGGAAATGTTGTCAAAATTTTCTT 57.682 29.630 19.17 11.46 30.80 2.52
716 717 9.671279 AGAGGAAATGTTGTCAAAATTTTCTTT 57.329 25.926 19.17 13.03 30.80 2.52
719 720 8.797215 GGAAATGTTGTCAAAATTTTCTTTTGC 58.203 29.630 13.76 2.84 38.79 3.68
720 721 9.339492 GAAATGTTGTCAAAATTTTCTTTTGCA 57.661 25.926 13.76 5.07 38.79 4.08
721 722 8.898983 AATGTTGTCAAAATTTTCTTTTGCAG 57.101 26.923 0.00 0.00 38.79 4.41
722 723 7.664082 TGTTGTCAAAATTTTCTTTTGCAGA 57.336 28.000 0.00 0.00 38.79 4.26
723 724 8.092521 TGTTGTCAAAATTTTCTTTTGCAGAA 57.907 26.923 0.00 0.00 39.99 3.02
724 725 8.229137 TGTTGTCAAAATTTTCTTTTGCAGAAG 58.771 29.630 10.67 10.67 42.76 2.85
725 726 8.442384 GTTGTCAAAATTTTCTTTTGCAGAAGA 58.558 29.630 15.27 15.27 42.76 2.87
739 740 5.122512 TGCAGAAGATAGATAGCGTAACC 57.877 43.478 0.00 0.00 0.00 2.85
745 746 3.334280 AGATAGATAGCGTAACCTCCCCT 59.666 47.826 0.00 0.00 0.00 4.79
783 787 1.789576 TTGGTTCCCTTCCCTCTGCC 61.790 60.000 0.00 0.00 0.00 4.85
813 820 0.170561 CATCGTCCGTCGTCTTCCTT 59.829 55.000 0.00 0.00 40.80 3.36
866 888 2.309504 CCCTGTCCCTTTCCCCTCC 61.310 68.421 0.00 0.00 0.00 4.30
879 912 2.269241 CCTCCGCTTTCCTCACCC 59.731 66.667 0.00 0.00 0.00 4.61
896 929 1.302949 CCCCTTTCCCATCGCAGAA 59.697 57.895 0.00 0.00 43.58 3.02
1123 1198 4.498682 GCGGATTTCCTGATCTGGATTTTG 60.499 45.833 20.77 11.61 35.83 2.44
1124 1199 4.498682 CGGATTTCCTGATCTGGATTTTGC 60.499 45.833 20.77 12.80 35.83 3.68
1125 1200 4.202192 GGATTTCCTGATCTGGATTTTGCC 60.202 45.833 20.77 13.98 35.83 4.52
1208 1287 4.832608 GTCGAATTCCGCGGGCCT 62.833 66.667 27.83 9.66 38.37 5.19
1221 1300 0.037605 CGGGCCTCAAGAAAGTACGT 60.038 55.000 0.84 0.00 0.00 3.57
1222 1301 1.203052 CGGGCCTCAAGAAAGTACGTA 59.797 52.381 0.84 0.00 0.00 3.57
1223 1302 2.614779 GGGCCTCAAGAAAGTACGTAC 58.385 52.381 18.10 18.10 0.00 3.67
1241 1320 2.841442 ACTACCTGCGCTTCTTCTTT 57.159 45.000 9.73 0.00 0.00 2.52
1292 1372 2.121009 GATTCGCTTCTTCTCGCCTAC 58.879 52.381 0.00 0.00 0.00 3.18
1405 1490 3.267860 CCGCTGCTTCTGCCGATC 61.268 66.667 0.00 0.00 38.71 3.69
1466 1555 3.936453 TGTCACTGCTACGTTTTCTTTGT 59.064 39.130 0.00 0.00 0.00 2.83
1467 1556 4.201773 TGTCACTGCTACGTTTTCTTTGTG 60.202 41.667 0.00 0.00 0.00 3.33
1468 1557 3.311322 TCACTGCTACGTTTTCTTTGTGG 59.689 43.478 0.00 0.00 0.00 4.17
1469 1558 3.311322 CACTGCTACGTTTTCTTTGTGGA 59.689 43.478 0.00 0.00 0.00 4.02
1552 1653 0.325933 ATGAGTTGCTGCACTGGCTA 59.674 50.000 0.00 0.00 41.91 3.93
1565 1666 1.293924 CTGGCTAATTGGTGCTCTCG 58.706 55.000 0.00 0.00 0.00 4.04
1668 1775 2.417586 CCCCTCGATTGGTTTCGTTAAC 59.582 50.000 0.00 0.00 40.03 2.01
1692 1799 5.312120 AGATATATCACCCGAATGTCGAC 57.688 43.478 15.08 9.11 43.74 4.20
1711 1820 4.093115 TCGACGAACTGTGAGTATTCTCTC 59.907 45.833 0.00 0.00 40.98 3.20
1732 1841 9.031360 TCTCTCGTATTCAGTATTTATTTGTGC 57.969 33.333 0.00 0.00 0.00 4.57
1733 1842 7.837505 TCTCGTATTCAGTATTTATTTGTGCG 58.162 34.615 0.00 0.00 0.00 5.34
1735 1844 6.036191 TCGTATTCAGTATTTATTTGTGCGCA 59.964 34.615 5.66 5.66 0.00 6.09
1736 1845 6.354362 CGTATTCAGTATTTATTTGTGCGCAG 59.646 38.462 12.22 0.00 0.00 5.18
1738 1847 5.621197 TCAGTATTTATTTGTGCGCAGTT 57.379 34.783 12.22 0.00 0.00 3.16
1739 1848 5.389778 TCAGTATTTATTTGTGCGCAGTTG 58.610 37.500 12.22 0.00 0.00 3.16
1740 1849 4.030529 CAGTATTTATTTGTGCGCAGTTGC 59.969 41.667 12.22 0.00 37.78 4.17
1741 1850 2.791383 TTTATTTGTGCGCAGTTGCT 57.209 40.000 12.22 0.00 39.32 3.91
1742 1851 2.330231 TTATTTGTGCGCAGTTGCTC 57.670 45.000 12.22 0.00 39.32 4.26
1744 1853 0.039798 ATTTGTGCGCAGTTGCTCAG 60.040 50.000 12.22 0.00 39.26 3.35
1745 1854 1.094650 TTTGTGCGCAGTTGCTCAGA 61.095 50.000 12.22 0.00 39.26 3.27
1746 1855 1.775039 TTGTGCGCAGTTGCTCAGAC 61.775 55.000 12.22 0.00 39.26 3.51
1747 1856 2.666190 TGCGCAGTTGCTCAGACC 60.666 61.111 5.66 0.00 39.32 3.85
1748 1857 3.426568 GCGCAGTTGCTCAGACCC 61.427 66.667 0.30 0.00 39.32 4.46
1751 1860 0.957395 CGCAGTTGCTCAGACCCATT 60.957 55.000 2.29 0.00 39.32 3.16
1752 1861 1.675714 CGCAGTTGCTCAGACCCATTA 60.676 52.381 2.29 0.00 39.32 1.90
1756 1865 4.035675 GCAGTTGCTCAGACCCATTATAAC 59.964 45.833 0.00 0.00 38.21 1.89
1767 1881 9.832445 TCAGACCCATTATAACAACTTTCTATC 57.168 33.333 0.00 0.00 0.00 2.08
1822 1936 2.435059 GGCTCCGTCTGCTTGGAC 60.435 66.667 0.00 0.00 0.00 4.02
1940 2060 4.952957 TCTGCATAAACAGAGAGCTCTACT 59.047 41.667 18.25 12.75 41.72 2.57
2191 2315 6.263168 CCATTGGATTATCTTTACGCTCCTTT 59.737 38.462 0.00 0.00 0.00 3.11
2193 2317 5.365619 TGGATTATCTTTACGCTCCTTTCC 58.634 41.667 0.00 0.00 0.00 3.13
2213 2337 5.479124 TCCAACTAGTGTAAAGAGGGAAC 57.521 43.478 0.00 0.00 0.00 3.62
2245 2369 0.403655 TAGACATGGTGGCCTTGCAA 59.596 50.000 3.32 0.00 32.73 4.08
2257 2381 0.954452 CCTTGCAACCTGACTTGTCC 59.046 55.000 0.00 0.00 0.00 4.02
2292 2416 3.785486 TGCCGAGTTCATCTAGACAATG 58.215 45.455 0.00 0.00 0.00 2.82
2299 2423 6.536582 CGAGTTCATCTAGACAATGACCAATT 59.463 38.462 0.00 0.00 33.01 2.32
2357 2481 1.202710 ACTTGTTGTATGGACGTGGCA 60.203 47.619 0.00 0.00 0.00 4.92
2446 2570 2.365941 TGGACTTGTTGTATGGACGTGA 59.634 45.455 0.00 0.00 0.00 4.35
2464 2588 3.063452 CGTGACGGCTTGCTTTATACATT 59.937 43.478 0.00 0.00 0.00 2.71
2566 2690 5.049828 CCTCCAAAGAATGTTGGTTTGTTC 58.950 41.667 4.00 0.00 46.93 3.18
2587 2711 1.950909 CAGGTGTTCTTTTGGGCGTTA 59.049 47.619 0.00 0.00 0.00 3.18
2680 2804 2.526304 TCAGACCCATAAGCGCATAC 57.474 50.000 11.47 0.00 0.00 2.39
2691 2815 3.465122 AAGCGCATACCGTAAGTTTTG 57.535 42.857 11.47 0.00 39.71 2.44
2706 2830 2.497273 AGTTTTGACCTGTTGCTTGCTT 59.503 40.909 0.00 0.00 0.00 3.91
2997 3129 9.401058 GACTATCATTAATTATTCATGGGAGGG 57.599 37.037 0.00 0.00 0.00 4.30
2998 3130 8.339247 ACTATCATTAATTATTCATGGGAGGGG 58.661 37.037 0.00 0.00 0.00 4.79
2999 3131 5.902760 TCATTAATTATTCATGGGAGGGGG 58.097 41.667 0.00 0.00 0.00 5.40
3000 3132 5.378377 TCATTAATTATTCATGGGAGGGGGT 59.622 40.000 0.00 0.00 0.00 4.95
3001 3133 3.618120 AATTATTCATGGGAGGGGGTG 57.382 47.619 0.00 0.00 0.00 4.61
3002 3134 1.994399 TTATTCATGGGAGGGGGTGT 58.006 50.000 0.00 0.00 0.00 4.16
3019 3151 1.000274 GTGTTTTGGTCAGCATGGGAC 60.000 52.381 0.00 0.00 36.16 4.46
3116 6633 3.367992 CAAGCACTTGTGGCATGTTTA 57.632 42.857 2.12 0.00 35.92 2.01
3137 6654 2.482721 ACTAGAAAACATGCCGAAACCG 59.517 45.455 0.00 0.00 0.00 4.44
3169 6686 7.892609 ACAAGAAACAATACTGGTTTTATCCC 58.107 34.615 0.00 0.00 38.50 3.85
3568 7098 0.247736 GCCAGAGGATGCGGGTATAG 59.752 60.000 0.00 0.00 0.00 1.31
3685 7215 3.068873 GTCGATGCAGGACCTATTTCTCT 59.931 47.826 9.02 0.00 0.00 3.10
3700 7230 0.737367 TCTCTGGCTCAATTCGCACG 60.737 55.000 0.00 0.00 0.00 5.34
3720 7250 1.874872 GCCATGTTTTGTTGCAGCAAT 59.125 42.857 17.11 0.00 0.00 3.56
3859 7389 7.772757 ACTTCAATTTACCTTCTGAGATGGATC 59.227 37.037 19.92 0.00 32.18 3.36
3935 7469 2.209273 TCGTCGATTTCGTACGGGATA 58.791 47.619 16.52 0.00 40.47 2.59
3936 7470 2.032894 TCGTCGATTTCGTACGGGATAC 60.033 50.000 16.52 5.95 40.47 2.24
3954 7488 2.613506 CCGGCTGTTTTCGGGTGAC 61.614 63.158 0.00 0.00 42.32 3.67
4070 7604 6.293698 AGTTAGTTTGTACTCCATCCGTTTT 58.706 36.000 0.00 0.00 35.78 2.43
4127 7661 7.870826 TCTACTGAAAAATGTACCAACATGTG 58.129 34.615 0.00 0.00 45.79 3.21
4143 7678 6.524239 CCAACATGTGAACATCAAATAAGTCG 59.476 38.462 0.00 0.00 33.61 4.18
4148 7683 7.490962 TGTGAACATCAAATAAGTCGTCTTT 57.509 32.000 0.00 0.00 35.36 2.52
4199 7742 8.213518 ACTGTATATGGTTGATTGATGTTGAC 57.786 34.615 0.00 0.00 0.00 3.18
4237 7781 8.871686 AAGCTCTGTAAACTTAAAATGTTTGG 57.128 30.769 0.00 0.00 38.02 3.28
4238 7782 8.007405 AGCTCTGTAAACTTAAAATGTTTGGT 57.993 30.769 0.00 0.00 38.02 3.67
4319 7868 6.166984 TGTTGAATTTGTATGCCTCCAAAA 57.833 33.333 0.00 0.00 34.52 2.44
4328 7877 6.662865 TGTATGCCTCCAAAAAGAAAATGA 57.337 33.333 0.00 0.00 0.00 2.57
4381 7931 1.136085 CATTCGTGTAGCGGTTGGTTG 60.136 52.381 0.00 0.00 41.72 3.77
4387 7937 0.820482 GTAGCGGTTGGTTGGTTGGT 60.820 55.000 0.00 0.00 0.00 3.67
4388 7938 0.106619 TAGCGGTTGGTTGGTTGGTT 60.107 50.000 0.00 0.00 0.00 3.67
4389 7939 1.066752 GCGGTTGGTTGGTTGGTTC 59.933 57.895 0.00 0.00 0.00 3.62
4390 7940 1.668101 GCGGTTGGTTGGTTGGTTCA 61.668 55.000 0.00 0.00 0.00 3.18
4404 7954 0.953960 GGTTCAGGTTAGCCACACGG 60.954 60.000 0.00 0.00 37.19 4.94
4435 7985 2.818432 GGAGACTGACAGAAACCGTCTA 59.182 50.000 10.08 0.00 35.29 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.270968 GTGATTGATCAGCGTCGCG 59.729 57.895 12.30 0.00 37.51 5.87
23 24 0.299895 CTGTGATTGATCAGCGTCGC 59.700 55.000 9.80 9.80 37.51 5.19
24 25 0.299895 GCTGTGATTGATCAGCGTCG 59.700 55.000 0.00 0.00 45.42 5.12
29 30 2.481568 ACACGTTGCTGTGATTGATCAG 59.518 45.455 10.55 0.00 42.55 2.90
30 31 2.223845 CACACGTTGCTGTGATTGATCA 59.776 45.455 10.55 0.00 43.77 2.92
31 32 2.413239 CCACACGTTGCTGTGATTGATC 60.413 50.000 5.44 0.00 43.77 2.92
32 33 1.536766 CCACACGTTGCTGTGATTGAT 59.463 47.619 5.44 0.00 43.77 2.57
33 34 0.943673 CCACACGTTGCTGTGATTGA 59.056 50.000 5.44 0.00 43.77 2.57
34 35 0.662619 ACCACACGTTGCTGTGATTG 59.337 50.000 5.44 0.00 43.77 2.67
35 36 1.065401 CAACCACACGTTGCTGTGATT 59.935 47.619 5.44 0.00 45.16 2.57
36 37 0.662619 CAACCACACGTTGCTGTGAT 59.337 50.000 5.44 0.00 45.16 3.06
37 38 2.094060 CAACCACACGTTGCTGTGA 58.906 52.632 5.44 0.00 45.16 3.58
38 39 4.688192 CAACCACACGTTGCTGTG 57.312 55.556 0.00 0.00 45.16 3.66
44 45 2.105134 TCTAACCATCCAACCACACGTT 59.895 45.455 0.00 0.00 33.90 3.99
45 46 1.695242 TCTAACCATCCAACCACACGT 59.305 47.619 0.00 0.00 0.00 4.49
46 47 2.346803 CTCTAACCATCCAACCACACG 58.653 52.381 0.00 0.00 0.00 4.49
47 48 2.618045 CCCTCTAACCATCCAACCACAC 60.618 54.545 0.00 0.00 0.00 3.82
48 49 1.633432 CCCTCTAACCATCCAACCACA 59.367 52.381 0.00 0.00 0.00 4.17
49 50 1.913419 TCCCTCTAACCATCCAACCAC 59.087 52.381 0.00 0.00 0.00 4.16
50 51 1.913419 GTCCCTCTAACCATCCAACCA 59.087 52.381 0.00 0.00 0.00 3.67
51 52 2.092914 CAGTCCCTCTAACCATCCAACC 60.093 54.545 0.00 0.00 0.00 3.77
52 53 2.572104 ACAGTCCCTCTAACCATCCAAC 59.428 50.000 0.00 0.00 0.00 3.77
53 54 2.571653 CACAGTCCCTCTAACCATCCAA 59.428 50.000 0.00 0.00 0.00 3.53
54 55 2.187958 CACAGTCCCTCTAACCATCCA 58.812 52.381 0.00 0.00 0.00 3.41
55 56 1.486726 CCACAGTCCCTCTAACCATCC 59.513 57.143 0.00 0.00 0.00 3.51
56 57 2.188817 ACCACAGTCCCTCTAACCATC 58.811 52.381 0.00 0.00 0.00 3.51
57 58 2.344093 ACCACAGTCCCTCTAACCAT 57.656 50.000 0.00 0.00 0.00 3.55
58 59 3.371965 GATACCACAGTCCCTCTAACCA 58.628 50.000 0.00 0.00 0.00 3.67
59 60 2.699321 GGATACCACAGTCCCTCTAACC 59.301 54.545 0.00 0.00 0.00 2.85
75 76 1.613061 CCTGGTGGGTTGGGGATAC 59.387 63.158 0.00 0.00 0.00 2.24
76 77 4.179896 CCTGGTGGGTTGGGGATA 57.820 61.111 0.00 0.00 0.00 2.59
86 87 1.549203 CAGGATTTGAACCCTGGTGG 58.451 55.000 0.00 0.00 44.68 4.61
91 92 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
92 93 1.177401 GAGCACCAGGATTTGAACCC 58.823 55.000 0.00 0.00 0.00 4.11
93 94 0.804989 CGAGCACCAGGATTTGAACC 59.195 55.000 0.00 0.00 0.00 3.62
94 95 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.000 0.00 0.00 0.00 3.18
95 96 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
96 97 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
97 98 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
98 99 1.549203 AAATGCGAGCACCAGGATTT 58.451 45.000 0.00 0.00 34.37 2.17
99 100 2.418368 TAAATGCGAGCACCAGGATT 57.582 45.000 0.00 0.00 0.00 3.01
100 101 2.645838 ATAAATGCGAGCACCAGGAT 57.354 45.000 0.00 0.00 0.00 3.24
101 102 2.418368 AATAAATGCGAGCACCAGGA 57.582 45.000 0.00 0.00 0.00 3.86
102 103 2.684881 AGAAATAAATGCGAGCACCAGG 59.315 45.455 0.00 0.00 0.00 4.45
103 104 3.488047 CCAGAAATAAATGCGAGCACCAG 60.488 47.826 0.00 0.00 0.00 4.00
104 105 2.423185 CCAGAAATAAATGCGAGCACCA 59.577 45.455 0.00 0.00 0.00 4.17
105 106 2.682856 TCCAGAAATAAATGCGAGCACC 59.317 45.455 0.00 0.00 0.00 5.01
106 107 4.558538 ATCCAGAAATAAATGCGAGCAC 57.441 40.909 0.00 0.00 0.00 4.40
107 108 8.565896 AATATATCCAGAAATAAATGCGAGCA 57.434 30.769 0.00 0.00 0.00 4.26
108 109 9.495754 GAAATATATCCAGAAATAAATGCGAGC 57.504 33.333 0.00 0.00 0.00 5.03
111 112 9.778993 CCTGAAATATATCCAGAAATAAATGCG 57.221 33.333 13.63 0.00 0.00 4.73
118 119 9.236006 CGGAAATCCTGAAATATATCCAGAAAT 57.764 33.333 13.63 6.78 0.00 2.17
119 120 7.665559 CCGGAAATCCTGAAATATATCCAGAAA 59.334 37.037 0.00 5.28 0.00 2.52
120 121 7.168219 CCGGAAATCCTGAAATATATCCAGAA 58.832 38.462 0.00 0.00 0.00 3.02
121 122 6.272324 ACCGGAAATCCTGAAATATATCCAGA 59.728 38.462 9.46 4.34 0.00 3.86
122 123 6.372659 CACCGGAAATCCTGAAATATATCCAG 59.627 42.308 9.46 7.68 0.00 3.86
123 124 6.043822 TCACCGGAAATCCTGAAATATATCCA 59.956 38.462 9.46 0.00 0.00 3.41
124 125 6.472887 TCACCGGAAATCCTGAAATATATCC 58.527 40.000 9.46 0.00 0.00 2.59
125 126 7.414540 GCATCACCGGAAATCCTGAAATATATC 60.415 40.741 9.46 0.00 0.00 1.63
126 127 6.375455 GCATCACCGGAAATCCTGAAATATAT 59.625 38.462 9.46 0.00 0.00 0.86
127 128 5.705441 GCATCACCGGAAATCCTGAAATATA 59.295 40.000 9.46 0.00 0.00 0.86
128 129 4.520492 GCATCACCGGAAATCCTGAAATAT 59.480 41.667 9.46 0.00 0.00 1.28
129 130 3.882888 GCATCACCGGAAATCCTGAAATA 59.117 43.478 9.46 0.00 0.00 1.40
130 131 2.689983 GCATCACCGGAAATCCTGAAAT 59.310 45.455 9.46 0.00 0.00 2.17
131 132 2.091541 GCATCACCGGAAATCCTGAAA 58.908 47.619 9.46 0.00 0.00 2.69
132 133 1.750193 GCATCACCGGAAATCCTGAA 58.250 50.000 9.46 0.00 0.00 3.02
133 134 0.461870 CGCATCACCGGAAATCCTGA 60.462 55.000 9.46 0.00 0.00 3.86
134 135 2.016961 CGCATCACCGGAAATCCTG 58.983 57.895 9.46 0.00 0.00 3.86
135 136 1.819632 GCGCATCACCGGAAATCCT 60.820 57.895 9.46 0.00 0.00 3.24
136 137 1.447317 ATGCGCATCACCGGAAATCC 61.447 55.000 19.28 0.00 30.90 3.01
137 138 0.381801 AATGCGCATCACCGGAAATC 59.618 50.000 25.53 0.00 30.90 2.17
138 139 0.381801 GAATGCGCATCACCGGAAAT 59.618 50.000 25.53 3.87 30.90 2.17
139 140 0.957888 TGAATGCGCATCACCGGAAA 60.958 50.000 25.53 2.10 30.90 3.13
140 141 1.368345 CTGAATGCGCATCACCGGAA 61.368 55.000 25.53 4.46 30.90 4.30
141 142 1.815003 CTGAATGCGCATCACCGGA 60.815 57.895 25.53 4.80 0.00 5.14
142 143 2.108514 ACTGAATGCGCATCACCGG 61.109 57.895 25.53 21.21 0.00 5.28
143 144 1.061411 CACTGAATGCGCATCACCG 59.939 57.895 25.53 18.28 0.00 4.94
144 145 1.430632 CCACTGAATGCGCATCACC 59.569 57.895 25.53 16.03 0.00 4.02
145 146 1.026182 TCCCACTGAATGCGCATCAC 61.026 55.000 25.53 20.34 0.00 3.06
146 147 0.745486 CTCCCACTGAATGCGCATCA 60.745 55.000 25.53 20.60 0.00 3.07
147 148 1.442526 CCTCCCACTGAATGCGCATC 61.443 60.000 25.53 17.12 0.00 3.91
148 149 1.452651 CCTCCCACTGAATGCGCAT 60.453 57.895 19.28 19.28 0.00 4.73
149 150 2.046023 CCTCCCACTGAATGCGCA 60.046 61.111 14.96 14.96 0.00 6.09
150 151 1.817099 CTCCTCCCACTGAATGCGC 60.817 63.158 0.00 0.00 0.00 6.09
151 152 0.460987 GTCTCCTCCCACTGAATGCG 60.461 60.000 0.00 0.00 0.00 4.73
152 153 0.460987 CGTCTCCTCCCACTGAATGC 60.461 60.000 0.00 0.00 0.00 3.56
153 154 0.898320 ACGTCTCCTCCCACTGAATG 59.102 55.000 0.00 0.00 0.00 2.67
154 155 1.645710 AACGTCTCCTCCCACTGAAT 58.354 50.000 0.00 0.00 0.00 2.57
155 156 1.343465 GAAACGTCTCCTCCCACTGAA 59.657 52.381 0.00 0.00 0.00 3.02
156 157 0.966920 GAAACGTCTCCTCCCACTGA 59.033 55.000 0.00 0.00 0.00 3.41
157 158 0.037232 GGAAACGTCTCCTCCCACTG 60.037 60.000 0.00 0.00 32.21 3.66
158 159 0.471211 TGGAAACGTCTCCTCCCACT 60.471 55.000 9.80 0.00 36.35 4.00
159 160 0.613777 ATGGAAACGTCTCCTCCCAC 59.386 55.000 9.80 0.00 36.35 4.61
160 161 0.902531 GATGGAAACGTCTCCTCCCA 59.097 55.000 9.80 1.52 43.31 4.37
161 162 0.902531 TGATGGAAACGTCTCCTCCC 59.097 55.000 9.80 0.00 46.90 4.30
162 163 2.347731 GTTGATGGAAACGTCTCCTCC 58.652 52.381 9.80 4.35 46.90 4.30
163 164 1.993370 CGTTGATGGAAACGTCTCCTC 59.007 52.381 9.80 5.07 46.02 3.71
164 165 2.080286 CGTTGATGGAAACGTCTCCT 57.920 50.000 9.80 0.00 46.02 3.69
171 172 0.442699 GCCTCGTCGTTGATGGAAAC 59.557 55.000 0.00 0.00 0.00 2.78
172 173 1.011968 CGCCTCGTCGTTGATGGAAA 61.012 55.000 0.00 0.00 0.00 3.13
173 174 1.445410 CGCCTCGTCGTTGATGGAA 60.445 57.895 0.00 0.00 0.00 3.53
174 175 2.180769 CGCCTCGTCGTTGATGGA 59.819 61.111 0.00 0.00 0.00 3.41
175 176 3.554692 GCGCCTCGTCGTTGATGG 61.555 66.667 0.00 0.00 0.00 3.51
176 177 2.607668 TAGGCGCCTCGTCGTTGATG 62.608 60.000 36.73 0.00 36.23 3.07
177 178 2.412323 TAGGCGCCTCGTCGTTGAT 61.412 57.895 36.73 7.63 36.23 2.57
178 179 3.057548 TAGGCGCCTCGTCGTTGA 61.058 61.111 36.73 10.36 36.23 3.18
179 180 2.879462 GTAGGCGCCTCGTCGTTG 60.879 66.667 36.73 0.00 36.23 4.10
180 181 4.471726 CGTAGGCGCCTCGTCGTT 62.472 66.667 36.73 10.36 36.23 3.85
182 183 3.950254 ATCGTAGGCGCCTCGTCG 61.950 66.667 36.73 32.16 36.23 5.12
183 184 2.353607 CATCGTAGGCGCCTCGTC 60.354 66.667 36.73 22.80 38.14 4.20
184 185 2.827190 TCATCGTAGGCGCCTCGT 60.827 61.111 36.73 21.23 38.14 4.18
185 186 2.337749 AAGTCATCGTAGGCGCCTCG 62.338 60.000 36.73 32.58 38.14 4.63
186 187 0.595310 GAAGTCATCGTAGGCGCCTC 60.595 60.000 36.73 23.04 38.14 4.70
187 188 1.437986 GAAGTCATCGTAGGCGCCT 59.562 57.895 34.85 34.85 38.14 5.52
188 189 1.944676 CGAAGTCATCGTAGGCGCC 60.945 63.158 21.89 21.89 46.52 6.53
189 190 3.601981 CGAAGTCATCGTAGGCGC 58.398 61.111 0.00 0.00 46.52 6.53
196 197 6.693113 TCATCTTGAGATTTACGAAGTCATCG 59.307 38.462 0.00 0.00 44.39 3.84
197 198 7.993821 TCATCTTGAGATTTACGAAGTCATC 57.006 36.000 0.00 0.00 35.39 2.92
199 200 9.468532 CATATCATCTTGAGATTTACGAAGTCA 57.531 33.333 0.00 0.00 35.39 3.41
200 201 8.431593 GCATATCATCTTGAGATTTACGAAGTC 58.568 37.037 0.00 0.00 35.39 3.01
201 202 7.386299 GGCATATCATCTTGAGATTTACGAAGT 59.614 37.037 0.00 0.00 37.29 3.01
202 203 7.411264 CGGCATATCATCTTGAGATTTACGAAG 60.411 40.741 0.00 0.00 31.21 3.79
203 204 6.366061 CGGCATATCATCTTGAGATTTACGAA 59.634 38.462 0.00 0.00 31.21 3.85
204 205 5.863935 CGGCATATCATCTTGAGATTTACGA 59.136 40.000 0.00 0.00 31.21 3.43
205 206 5.062683 CCGGCATATCATCTTGAGATTTACG 59.937 44.000 0.00 0.00 31.21 3.18
206 207 5.163814 GCCGGCATATCATCTTGAGATTTAC 60.164 44.000 24.80 0.00 31.21 2.01
207 208 4.937620 GCCGGCATATCATCTTGAGATTTA 59.062 41.667 24.80 0.00 31.21 1.40
208 209 3.755378 GCCGGCATATCATCTTGAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
209 210 3.008813 AGCCGGCATATCATCTTGAGATT 59.991 43.478 31.54 0.00 31.21 2.40
210 211 2.570752 AGCCGGCATATCATCTTGAGAT 59.429 45.455 31.54 0.00 34.56 2.75
211 212 1.973515 AGCCGGCATATCATCTTGAGA 59.026 47.619 31.54 0.00 0.00 3.27
212 213 2.289257 TGAGCCGGCATATCATCTTGAG 60.289 50.000 31.54 0.00 0.00 3.02
213 214 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
214 215 2.174363 TGAGCCGGCATATCATCTTG 57.826 50.000 31.54 0.00 0.00 3.02
215 216 3.008813 AGAATGAGCCGGCATATCATCTT 59.991 43.478 31.54 15.40 32.59 2.40
216 217 2.570752 AGAATGAGCCGGCATATCATCT 59.429 45.455 31.54 21.61 32.59 2.90
217 218 2.983229 AGAATGAGCCGGCATATCATC 58.017 47.619 31.54 19.98 32.59 2.92
218 219 3.430042 AAGAATGAGCCGGCATATCAT 57.570 42.857 31.54 25.29 35.21 2.45
219 220 2.936919 AAGAATGAGCCGGCATATCA 57.063 45.000 31.54 24.11 0.00 2.15
220 221 2.158449 CGAAAGAATGAGCCGGCATATC 59.842 50.000 31.54 18.63 0.00 1.63
221 222 2.146342 CGAAAGAATGAGCCGGCATAT 58.854 47.619 31.54 19.46 0.00 1.78
222 223 1.581934 CGAAAGAATGAGCCGGCATA 58.418 50.000 31.54 17.84 0.00 3.14
223 224 1.097547 CCGAAAGAATGAGCCGGCAT 61.098 55.000 31.54 12.05 33.47 4.40
224 225 1.745115 CCGAAAGAATGAGCCGGCA 60.745 57.895 31.54 9.64 33.47 5.69
225 226 1.432270 CTCCGAAAGAATGAGCCGGC 61.432 60.000 21.89 21.89 39.96 6.13
226 227 0.175760 TCTCCGAAAGAATGAGCCGG 59.824 55.000 0.00 0.00 41.36 6.13
227 228 1.863454 CATCTCCGAAAGAATGAGCCG 59.137 52.381 0.00 0.00 37.61 5.52
228 229 1.601430 GCATCTCCGAAAGAATGAGCC 59.399 52.381 0.00 0.00 37.61 4.70
229 230 2.543430 GAGCATCTCCGAAAGAATGAGC 59.457 50.000 0.00 0.00 37.61 4.26
230 231 3.790091 TGAGCATCTCCGAAAGAATGAG 58.210 45.455 0.00 0.00 37.61 2.90
231 232 3.893326 TGAGCATCTCCGAAAGAATGA 57.107 42.857 0.00 0.00 37.61 2.57
232 233 4.689812 CCTATGAGCATCTCCGAAAGAATG 59.310 45.833 0.00 0.00 37.61 2.67
233 234 4.262808 CCCTATGAGCATCTCCGAAAGAAT 60.263 45.833 0.00 0.00 37.61 2.40
234 235 3.070159 CCCTATGAGCATCTCCGAAAGAA 59.930 47.826 0.00 0.00 37.61 2.52
235 236 2.630098 CCCTATGAGCATCTCCGAAAGA 59.370 50.000 0.00 0.00 38.72 2.52
236 237 2.289320 CCCCTATGAGCATCTCCGAAAG 60.289 54.545 0.00 0.00 34.92 2.62
237 238 1.694150 CCCCTATGAGCATCTCCGAAA 59.306 52.381 0.00 0.00 34.92 3.46
238 239 1.342074 CCCCTATGAGCATCTCCGAA 58.658 55.000 0.00 0.00 34.92 4.30
239 240 0.188587 ACCCCTATGAGCATCTCCGA 59.811 55.000 0.00 0.00 34.92 4.55
240 241 1.821753 CTACCCCTATGAGCATCTCCG 59.178 57.143 0.00 0.00 34.92 4.63
241 242 2.183679 CCTACCCCTATGAGCATCTCC 58.816 57.143 0.00 0.00 34.92 3.71
242 243 2.183679 CCCTACCCCTATGAGCATCTC 58.816 57.143 0.00 0.00 34.92 2.75
243 244 1.509961 ACCCTACCCCTATGAGCATCT 59.490 52.381 0.00 0.00 34.92 2.90
244 245 2.031495 ACCCTACCCCTATGAGCATC 57.969 55.000 0.00 0.00 0.00 3.91
245 246 3.454858 CATACCCTACCCCTATGAGCAT 58.545 50.000 0.00 0.00 0.00 3.79
246 247 2.902608 CATACCCTACCCCTATGAGCA 58.097 52.381 0.00 0.00 0.00 4.26
247 248 1.555533 GCATACCCTACCCCTATGAGC 59.444 57.143 0.00 0.00 0.00 4.26
248 249 1.825474 CGCATACCCTACCCCTATGAG 59.175 57.143 0.00 0.00 0.00 2.90
249 250 1.148446 ACGCATACCCTACCCCTATGA 59.852 52.381 0.00 0.00 0.00 2.15
250 251 1.275291 CACGCATACCCTACCCCTATG 59.725 57.143 0.00 0.00 0.00 2.23
251 252 1.132945 ACACGCATACCCTACCCCTAT 60.133 52.381 0.00 0.00 0.00 2.57
252 253 0.262580 ACACGCATACCCTACCCCTA 59.737 55.000 0.00 0.00 0.00 3.53
253 254 1.002533 ACACGCATACCCTACCCCT 59.997 57.895 0.00 0.00 0.00 4.79
254 255 1.145377 CACACGCATACCCTACCCC 59.855 63.158 0.00 0.00 0.00 4.95
255 256 0.461339 CACACACGCATACCCTACCC 60.461 60.000 0.00 0.00 0.00 3.69
256 257 1.087771 GCACACACGCATACCCTACC 61.088 60.000 0.00 0.00 0.00 3.18
257 258 1.418342 CGCACACACGCATACCCTAC 61.418 60.000 0.00 0.00 0.00 3.18
258 259 1.153726 CGCACACACGCATACCCTA 60.154 57.895 0.00 0.00 0.00 3.53
259 260 2.434185 CGCACACACGCATACCCT 60.434 61.111 0.00 0.00 0.00 4.34
260 261 2.235536 GAACGCACACACGCATACCC 62.236 60.000 0.00 0.00 36.19 3.69
261 262 1.131826 GAACGCACACACGCATACC 59.868 57.895 0.00 0.00 36.19 2.73
262 263 0.442310 ATGAACGCACACACGCATAC 59.558 50.000 0.00 0.00 36.19 2.39
263 264 1.923864 CTATGAACGCACACACGCATA 59.076 47.619 0.00 0.00 36.19 3.14
264 265 0.721154 CTATGAACGCACACACGCAT 59.279 50.000 0.00 0.00 36.19 4.73
265 266 1.288419 CCTATGAACGCACACACGCA 61.288 55.000 0.00 0.00 36.19 5.24
266 267 1.419922 CCTATGAACGCACACACGC 59.580 57.895 0.00 0.00 36.19 5.34
267 268 1.966493 GCCCTATGAACGCACACACG 61.966 60.000 0.00 0.00 39.50 4.49
268 269 1.794222 GCCCTATGAACGCACACAC 59.206 57.895 0.00 0.00 0.00 3.82
269 270 1.739929 CGCCCTATGAACGCACACA 60.740 57.895 0.00 0.00 0.00 3.72
270 271 1.421410 CTCGCCCTATGAACGCACAC 61.421 60.000 0.00 0.00 0.00 3.82
271 272 1.153647 CTCGCCCTATGAACGCACA 60.154 57.895 0.00 0.00 0.00 4.57
272 273 1.153628 ACTCGCCCTATGAACGCAC 60.154 57.895 0.00 0.00 0.00 5.34
273 274 1.153647 CACTCGCCCTATGAACGCA 60.154 57.895 0.00 0.00 0.00 5.24
274 275 0.101759 TACACTCGCCCTATGAACGC 59.898 55.000 0.00 0.00 0.00 4.84
275 276 2.394708 CATACACTCGCCCTATGAACG 58.605 52.381 0.00 0.00 0.00 3.95
276 277 2.135933 GCATACACTCGCCCTATGAAC 58.864 52.381 0.00 0.00 0.00 3.18
277 278 1.269569 CGCATACACTCGCCCTATGAA 60.270 52.381 0.00 0.00 0.00 2.57
278 279 0.313987 CGCATACACTCGCCCTATGA 59.686 55.000 0.00 0.00 0.00 2.15
279 280 1.284982 GCGCATACACTCGCCCTATG 61.285 60.000 0.30 0.00 45.01 2.23
280 281 1.006102 GCGCATACACTCGCCCTAT 60.006 57.895 0.30 0.00 45.01 2.57
281 282 2.415843 GCGCATACACTCGCCCTA 59.584 61.111 0.30 0.00 45.01 3.53
285 286 1.206745 ATACACGCGCATACACTCGC 61.207 55.000 5.73 0.00 46.98 5.03
286 287 2.026915 TATACACGCGCATACACTCG 57.973 50.000 5.73 0.00 0.00 4.18
287 288 3.561503 TCATATACACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
288 289 3.565516 CTCATATACACGCGCATACACT 58.434 45.455 5.73 0.00 0.00 3.55
289 290 2.090658 GCTCATATACACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
290 291 2.324860 GCTCATATACACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
291 292 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
292 293 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
293 294 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
294 295 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
298 299 0.159554 CGCAAGCGCTCATATACACG 59.840 55.000 12.06 2.00 35.30 4.49
299 300 1.190323 GACGCAAGCGCTCATATACAC 59.810 52.381 12.06 0.00 44.19 2.90
300 301 1.067060 AGACGCAAGCGCTCATATACA 59.933 47.619 12.06 0.00 44.19 2.29
301 302 1.453524 CAGACGCAAGCGCTCATATAC 59.546 52.381 12.06 1.00 44.19 1.47
302 303 1.067060 ACAGACGCAAGCGCTCATATA 59.933 47.619 12.06 0.00 44.19 0.86
303 304 0.179100 ACAGACGCAAGCGCTCATAT 60.179 50.000 12.06 0.00 44.19 1.78
304 305 0.454196 TACAGACGCAAGCGCTCATA 59.546 50.000 12.06 5.16 44.19 2.15
305 306 1.078759 GTACAGACGCAAGCGCTCAT 61.079 55.000 12.06 0.00 44.19 2.90
306 307 1.733041 GTACAGACGCAAGCGCTCA 60.733 57.895 12.06 0.83 44.19 4.26
307 308 1.444553 AGTACAGACGCAAGCGCTC 60.445 57.895 12.06 11.06 44.19 5.03
308 309 1.734477 CAGTACAGACGCAAGCGCT 60.734 57.895 15.09 2.64 44.19 5.92
309 310 1.078759 ATCAGTACAGACGCAAGCGC 61.079 55.000 15.09 0.00 44.19 5.92
310 311 0.642291 CATCAGTACAGACGCAAGCG 59.358 55.000 13.50 13.50 46.03 4.68
311 312 1.714794 ACATCAGTACAGACGCAAGC 58.285 50.000 0.00 0.00 45.62 4.01
313 314 6.606234 TTTTTAACATCAGTACAGACGCAA 57.394 33.333 0.00 0.00 0.00 4.85
339 340 0.452950 CGAGAAGTGTCACGTCCTCG 60.453 60.000 21.16 21.16 43.34 4.63
340 341 0.109689 CCGAGAAGTGTCACGTCCTC 60.110 60.000 14.34 12.08 36.27 3.71
403 404 3.440173 GGAAAAATGATCTGTCGGCAAGA 59.560 43.478 0.00 0.00 0.00 3.02
449 450 7.087409 TCCACAAAGTTGCAATATCATAGTG 57.913 36.000 0.59 5.94 0.00 2.74
451 452 8.028354 TGTTTCCACAAAGTTGCAATATCATAG 58.972 33.333 0.59 0.00 0.00 2.23
459 460 2.600731 CGTGTTTCCACAAAGTTGCAA 58.399 42.857 0.00 0.00 41.93 4.08
473 474 0.111001 CGTCCGATTTTCGCGTGTTT 60.111 50.000 5.77 0.00 38.82 2.83
531 532 5.163834 CGGCCTACGTTTTATAAAGAAAGCA 60.164 40.000 0.00 0.00 37.93 3.91
532 533 5.260900 CGGCCTACGTTTTATAAAGAAAGC 58.739 41.667 0.00 0.00 37.93 3.51
533 534 5.163834 TGCGGCCTACGTTTTATAAAGAAAG 60.164 40.000 0.00 0.00 46.52 2.62
537 538 3.619929 AGTGCGGCCTACGTTTTATAAAG 59.380 43.478 0.00 0.00 46.52 1.85
539 540 3.189285 GAGTGCGGCCTACGTTTTATAA 58.811 45.455 0.00 0.00 46.52 0.98
540 541 2.481795 GGAGTGCGGCCTACGTTTTATA 60.482 50.000 0.00 0.00 46.52 0.98
541 542 1.648504 GAGTGCGGCCTACGTTTTAT 58.351 50.000 0.00 0.00 46.52 1.40
542 543 0.390209 GGAGTGCGGCCTACGTTTTA 60.390 55.000 0.00 0.00 46.52 1.52
543 544 1.670083 GGAGTGCGGCCTACGTTTT 60.670 57.895 0.00 0.00 46.52 2.43
556 557 1.545651 GGAAAAGGTCTGGGTGGAGTG 60.546 57.143 0.00 0.00 0.00 3.51
564 565 2.158310 AGGAAAAGGGGAAAAGGTCTGG 60.158 50.000 0.00 0.00 0.00 3.86
570 571 1.605457 GCGCAAGGAAAAGGGGAAAAG 60.605 52.381 0.30 0.00 38.28 2.27
576 577 3.206211 TTGCGCGCAAGGAAAAGGG 62.206 57.895 40.23 0.00 38.28 3.95
585 586 4.007940 GAGTTCGGTTGCGCGCAA 62.008 61.111 40.23 40.23 0.00 4.85
596 597 0.179134 AAATCCTCTCGCCGAGTTCG 60.179 55.000 14.64 4.10 38.11 3.95
597 598 1.562017 GAAATCCTCTCGCCGAGTTC 58.438 55.000 14.64 6.34 38.11 3.01
598 599 0.175989 GGAAATCCTCTCGCCGAGTT 59.824 55.000 14.64 0.00 38.11 3.01
599 600 0.970937 TGGAAATCCTCTCGCCGAGT 60.971 55.000 14.64 0.00 38.11 4.18
600 601 0.390860 ATGGAAATCCTCTCGCCGAG 59.609 55.000 8.05 8.05 39.57 4.63
601 602 0.389391 GATGGAAATCCTCTCGCCGA 59.611 55.000 0.44 0.00 36.82 5.54
602 603 0.104855 TGATGGAAATCCTCTCGCCG 59.895 55.000 0.44 0.00 36.82 6.46
603 604 2.332063 TTGATGGAAATCCTCTCGCC 57.668 50.000 0.44 0.00 36.82 5.54
604 605 4.907879 AATTTGATGGAAATCCTCTCGC 57.092 40.909 0.44 0.00 32.76 5.03
605 606 5.517770 GCAAAATTTGATGGAAATCCTCTCG 59.482 40.000 10.26 0.00 32.76 4.04
606 607 5.814188 GGCAAAATTTGATGGAAATCCTCTC 59.186 40.000 10.26 0.00 32.76 3.20
607 608 5.248934 TGGCAAAATTTGATGGAAATCCTCT 59.751 36.000 10.26 0.00 32.76 3.69
608 609 5.352293 GTGGCAAAATTTGATGGAAATCCTC 59.648 40.000 10.26 0.00 32.76 3.71
643 644 2.033236 CGCTCACGTTTCTGCTTTGTTA 60.033 45.455 0.00 0.00 33.53 2.41
644 645 1.268032 CGCTCACGTTTCTGCTTTGTT 60.268 47.619 0.00 0.00 33.53 2.83
645 646 0.304705 CGCTCACGTTTCTGCTTTGT 59.695 50.000 0.00 0.00 33.53 2.83
646 647 0.581529 TCGCTCACGTTTCTGCTTTG 59.418 50.000 0.00 0.00 41.18 2.77
650 651 0.582005 AAGTTCGCTCACGTTTCTGC 59.418 50.000 0.00 0.00 41.18 4.26
655 656 3.371591 TGTTTACAAAGTTCGCTCACGTT 59.628 39.130 0.00 0.00 41.18 3.99
676 677 6.208644 ACATTTCCTCTCACGAAAACATTTG 58.791 36.000 0.00 0.00 33.19 2.32
677 678 6.391227 ACATTTCCTCTCACGAAAACATTT 57.609 33.333 0.00 0.00 33.19 2.32
678 679 6.183360 ACAACATTTCCTCTCACGAAAACATT 60.183 34.615 0.00 0.00 33.19 2.71
679 680 5.299279 ACAACATTTCCTCTCACGAAAACAT 59.701 36.000 0.00 0.00 33.19 2.71
681 682 5.169836 ACAACATTTCCTCTCACGAAAAC 57.830 39.130 0.00 0.00 33.19 2.43
682 683 4.878971 TGACAACATTTCCTCTCACGAAAA 59.121 37.500 0.00 0.00 33.19 2.29
684 685 4.066646 TGACAACATTTCCTCTCACGAA 57.933 40.909 0.00 0.00 0.00 3.85
685 686 3.744238 TGACAACATTTCCTCTCACGA 57.256 42.857 0.00 0.00 0.00 4.35
686 687 4.811555 TTTGACAACATTTCCTCTCACG 57.188 40.909 0.00 0.00 0.00 4.35
687 688 8.424274 AAAATTTTGACAACATTTCCTCTCAC 57.576 30.769 11.66 0.00 0.00 3.51
689 690 8.877808 AGAAAATTTTGACAACATTTCCTCTC 57.122 30.769 8.47 6.85 0.00 3.20
690 691 9.671279 AAAGAAAATTTTGACAACATTTCCTCT 57.329 25.926 8.47 9.44 0.00 3.69
693 694 8.797215 GCAAAAGAAAATTTTGACAACATTTCC 58.203 29.630 8.47 1.01 40.73 3.13
694 695 9.339492 TGCAAAAGAAAATTTTGACAACATTTC 57.661 25.926 8.47 10.60 40.73 2.17
695 696 9.344309 CTGCAAAAGAAAATTTTGACAACATTT 57.656 25.926 8.47 6.50 40.73 2.32
696 697 8.728833 TCTGCAAAAGAAAATTTTGACAACATT 58.271 25.926 8.47 0.00 40.73 2.71
699 700 8.442384 TCTTCTGCAAAAGAAAATTTTGACAAC 58.558 29.630 8.47 0.00 44.38 3.32
701 702 8.721019 ATCTTCTGCAAAAGAAAATTTTGACA 57.279 26.923 6.56 11.50 44.38 3.58
708 709 8.341173 CGCTATCTATCTTCTGCAAAAGAAAAT 58.659 33.333 6.56 3.71 44.38 1.82
709 710 7.334421 ACGCTATCTATCTTCTGCAAAAGAAAA 59.666 33.333 6.56 0.00 44.38 2.29
710 711 6.818644 ACGCTATCTATCTTCTGCAAAAGAAA 59.181 34.615 6.56 0.00 44.38 2.52
711 712 6.341316 ACGCTATCTATCTTCTGCAAAAGAA 58.659 36.000 6.56 0.00 42.83 2.52
712 713 5.907207 ACGCTATCTATCTTCTGCAAAAGA 58.093 37.500 4.65 4.65 39.49 2.52
713 714 7.306866 GGTTACGCTATCTATCTTCTGCAAAAG 60.307 40.741 0.00 0.00 0.00 2.27
714 715 6.479001 GGTTACGCTATCTATCTTCTGCAAAA 59.521 38.462 0.00 0.00 0.00 2.44
715 716 5.983720 GGTTACGCTATCTATCTTCTGCAAA 59.016 40.000 0.00 0.00 0.00 3.68
716 717 5.302059 AGGTTACGCTATCTATCTTCTGCAA 59.698 40.000 0.00 0.00 0.00 4.08
717 718 4.827835 AGGTTACGCTATCTATCTTCTGCA 59.172 41.667 0.00 0.00 0.00 4.41
718 719 5.379732 AGGTTACGCTATCTATCTTCTGC 57.620 43.478 0.00 0.00 0.00 4.26
719 720 5.106078 GGGAGGTTACGCTATCTATCTTCTG 60.106 48.000 0.00 0.00 0.00 3.02
720 721 5.011586 GGGAGGTTACGCTATCTATCTTCT 58.988 45.833 0.00 0.00 0.00 2.85
721 722 4.158209 GGGGAGGTTACGCTATCTATCTTC 59.842 50.000 0.00 0.00 0.00 2.87
722 723 4.087907 GGGGAGGTTACGCTATCTATCTT 58.912 47.826 0.00 0.00 0.00 2.40
723 724 3.334280 AGGGGAGGTTACGCTATCTATCT 59.666 47.826 0.00 0.00 0.00 1.98
724 725 3.699413 AGGGGAGGTTACGCTATCTATC 58.301 50.000 0.00 0.00 0.00 2.08
725 726 3.829728 AGGGGAGGTTACGCTATCTAT 57.170 47.619 0.00 0.00 0.00 1.98
728 729 3.244009 GGTAAAGGGGAGGTTACGCTATC 60.244 52.174 0.00 0.00 32.11 2.08
739 740 0.328258 CTGGTGGTGGTAAAGGGGAG 59.672 60.000 0.00 0.00 0.00 4.30
745 746 1.513858 ACTGGTCTGGTGGTGGTAAA 58.486 50.000 0.00 0.00 0.00 2.01
783 787 0.037882 CGGACGATGGATGGATGGAG 60.038 60.000 0.00 0.00 0.00 3.86
813 820 3.791076 GAGGGGATGGGAGGGGGA 61.791 72.222 0.00 0.00 0.00 4.81
842 864 3.946126 GAAAGGGACAGGGCAGGGC 62.946 68.421 0.00 0.00 0.00 5.19
843 865 2.356667 GAAAGGGACAGGGCAGGG 59.643 66.667 0.00 0.00 0.00 4.45
844 866 2.356667 GGAAAGGGACAGGGCAGG 59.643 66.667 0.00 0.00 0.00 4.85
845 867 2.356667 GGGAAAGGGACAGGGCAG 59.643 66.667 0.00 0.00 0.00 4.85
846 868 3.264845 GGGGAAAGGGACAGGGCA 61.265 66.667 0.00 0.00 0.00 5.36
866 888 0.960861 GAAAGGGGGTGAGGAAAGCG 60.961 60.000 0.00 0.00 0.00 4.68
879 912 1.379642 GCTTCTGCGATGGGAAAGGG 61.380 60.000 0.00 0.00 0.00 3.95
933 980 3.006967 CCTATTGGGGATAAGACGAGGTG 59.993 52.174 0.00 0.00 0.00 4.00
959 1006 1.626654 AATCAAGAACGTGGCGAGCG 61.627 55.000 0.00 0.00 0.00 5.03
960 1007 0.179215 CAATCAAGAACGTGGCGAGC 60.179 55.000 0.00 0.00 0.00 5.03
962 1009 1.144969 GACAATCAAGAACGTGGCGA 58.855 50.000 0.00 0.00 0.00 5.54
1123 1198 4.819761 TCATCCTGCGAGCACGGC 62.820 66.667 5.52 0.00 40.15 5.68
1124 1199 2.107750 ATCATCCTGCGAGCACGG 59.892 61.111 5.52 0.58 40.15 4.94
1125 1200 1.213733 CTCATCATCCTGCGAGCACG 61.214 60.000 0.00 0.00 42.93 5.34
1208 1287 4.378770 CGCAGGTAGTACGTACTTTCTTGA 60.379 45.833 31.58 11.39 37.73 3.02
1221 1300 3.955650 AAAGAAGAAGCGCAGGTAGTA 57.044 42.857 11.47 0.00 37.06 1.82
1222 1301 2.841442 AAAGAAGAAGCGCAGGTAGT 57.159 45.000 11.47 0.00 37.06 2.73
1223 1302 3.498397 TGAAAAAGAAGAAGCGCAGGTAG 59.502 43.478 11.47 0.00 37.06 3.18
1241 1320 2.024022 GCTGTGCGTGCGTTGAAA 59.976 55.556 0.00 0.00 0.00 2.69
1292 1372 0.886490 AACCAGAAGCTGCTGAACGG 60.886 55.000 24.34 8.89 38.14 4.44
1367 1452 1.669795 GCGGGCAATGGCATAATAAGC 60.670 52.381 9.51 0.65 43.71 3.09
1368 1453 1.067635 GGCGGGCAATGGCATAATAAG 60.068 52.381 9.51 0.00 43.71 1.73
1405 1490 0.924090 CGCCGCTGTTCTTAAGCTAG 59.076 55.000 0.00 0.00 38.57 3.42
1466 1555 1.452540 AGGCATCATCCATCCATCCA 58.547 50.000 0.00 0.00 0.00 3.41
1467 1556 2.599408 AAGGCATCATCCATCCATCC 57.401 50.000 0.00 0.00 0.00 3.51
1468 1557 4.660168 ACTAAAGGCATCATCCATCCATC 58.340 43.478 0.00 0.00 0.00 3.51
1469 1558 4.736611 ACTAAAGGCATCATCCATCCAT 57.263 40.909 0.00 0.00 0.00 3.41
1512 1601 7.709613 ACTCATCTTATATTGGTGGTACGAAAC 59.290 37.037 0.00 0.00 0.00 2.78
1552 1653 3.057969 TCATCAACGAGAGCACCAATT 57.942 42.857 0.00 0.00 0.00 2.32
1565 1666 8.451748 GGTAGAGACCTGTTAAAATTCATCAAC 58.548 37.037 0.00 0.00 43.16 3.18
1668 1775 5.573282 GTCGACATTCGGGTGATATATCTTG 59.427 44.000 11.55 1.84 40.88 3.02
1692 1799 4.343811 ACGAGAGAATACTCACAGTTCG 57.656 45.455 0.00 0.00 44.79 3.95
1711 1820 6.188871 TGCGCACAAATAAATACTGAATACG 58.811 36.000 5.66 0.00 0.00 3.06
1727 1836 1.523484 TCTGAGCAACTGCGCACAA 60.523 52.632 5.66 0.00 45.55 3.33
1728 1837 2.108771 TCTGAGCAACTGCGCACA 59.891 55.556 5.66 0.00 45.55 4.57
1729 1838 2.553268 GTCTGAGCAACTGCGCAC 59.447 61.111 5.66 0.00 45.55 5.34
1733 1842 2.113860 TAATGGGTCTGAGCAACTGC 57.886 50.000 9.30 0.00 42.49 4.40
1735 1844 5.435686 TGTTATAATGGGTCTGAGCAACT 57.564 39.130 9.30 0.00 0.00 3.16
1736 1845 5.648092 AGTTGTTATAATGGGTCTGAGCAAC 59.352 40.000 9.30 4.16 34.51 4.17
1738 1847 5.435686 AGTTGTTATAATGGGTCTGAGCA 57.564 39.130 9.30 0.00 0.00 4.26
1739 1848 6.599638 AGAAAGTTGTTATAATGGGTCTGAGC 59.400 38.462 0.00 0.00 0.00 4.26
1740 1849 9.838339 ATAGAAAGTTGTTATAATGGGTCTGAG 57.162 33.333 0.00 0.00 0.00 3.35
1741 1850 9.832445 GATAGAAAGTTGTTATAATGGGTCTGA 57.168 33.333 0.00 0.00 0.00 3.27
1742 1851 9.838339 AGATAGAAAGTTGTTATAATGGGTCTG 57.162 33.333 0.00 0.00 0.00 3.51
1744 1853 9.274206 GGAGATAGAAAGTTGTTATAATGGGTC 57.726 37.037 0.00 0.00 0.00 4.46
1745 1854 9.004231 AGGAGATAGAAAGTTGTTATAATGGGT 57.996 33.333 0.00 0.00 0.00 4.51
1756 1865 8.180267 CACAAGCATTTAGGAGATAGAAAGTTG 58.820 37.037 0.00 0.00 0.00 3.16
1767 1881 5.735354 GCATTCATCCACAAGCATTTAGGAG 60.735 44.000 0.00 0.00 0.00 3.69
1774 1888 3.965379 TTTGCATTCATCCACAAGCAT 57.035 38.095 0.00 0.00 0.00 3.79
1775 1889 3.965379 ATTTGCATTCATCCACAAGCA 57.035 38.095 0.00 0.00 0.00 3.91
1776 1890 3.998341 ACAATTTGCATTCATCCACAAGC 59.002 39.130 0.00 0.00 0.00 4.01
1903 2019 6.881065 TGTTTATGCAGAGAATGTAAGAAGCT 59.119 34.615 0.00 0.00 0.00 3.74
1904 2020 7.065085 TCTGTTTATGCAGAGAATGTAAGAAGC 59.935 37.037 0.00 0.00 40.23 3.86
1905 2021 8.484641 TCTGTTTATGCAGAGAATGTAAGAAG 57.515 34.615 0.00 0.00 40.23 2.85
1921 2037 6.393990 ACAACAGTAGAGCTCTCTGTTTATG 58.606 40.000 34.54 29.77 45.97 1.90
1987 2109 7.864686 TCAAACACATTGACAAGATCTGTAAG 58.135 34.615 0.00 0.00 43.08 2.34
2191 2315 5.152934 AGTTCCCTCTTTACACTAGTTGGA 58.847 41.667 0.00 0.00 0.00 3.53
2193 2317 6.097915 TGAGTTCCCTCTTTACACTAGTTG 57.902 41.667 0.00 0.00 38.61 3.16
2245 2369 6.655930 TGTAAGTTAAAAGGACAAGTCAGGT 58.344 36.000 2.29 0.00 0.00 4.00
2257 2381 6.664515 TGAACTCGGCATTGTAAGTTAAAAG 58.335 36.000 0.00 0.00 32.34 2.27
2326 2450 1.299541 ACAACAAGTCCGAGTGCAAG 58.700 50.000 0.00 0.00 0.00 4.01
2425 2549 2.365941 TCACGTCCATACAACAAGTCCA 59.634 45.455 0.00 0.00 0.00 4.02
2446 2570 5.169836 GCTTAATGTATAAAGCAAGCCGT 57.830 39.130 2.35 0.00 45.89 5.68
2464 2588 4.752879 AGGCTTTCGCGCGGCTTA 62.753 61.111 31.69 7.56 36.88 3.09
2469 2593 0.648441 TAAATACAGGCTTTCGCGCG 59.352 50.000 26.76 26.76 36.88 6.86
2516 2640 9.516546 CTTCTTACCTAAAACCTATCCAAAAGT 57.483 33.333 0.00 0.00 0.00 2.66
2535 2659 5.703876 CAACATTCTTTGGAGGCTTCTTAC 58.296 41.667 0.00 0.00 0.00 2.34
2566 2690 1.106944 ACGCCCAAAAGAACACCTGG 61.107 55.000 0.00 0.00 0.00 4.45
2680 2804 2.616842 AGCAACAGGTCAAAACTTACGG 59.383 45.455 0.00 0.00 0.00 4.02
2691 2815 0.595095 CAGGAAGCAAGCAACAGGTC 59.405 55.000 0.00 0.00 0.00 3.85
2977 3109 5.481473 CACCCCCTCCCATGAATAATTAATG 59.519 44.000 0.00 0.00 0.00 1.90
2981 3113 2.865165 ACACCCCCTCCCATGAATAATT 59.135 45.455 0.00 0.00 0.00 1.40
2984 3116 1.994399 AACACCCCCTCCCATGAATA 58.006 50.000 0.00 0.00 0.00 1.75
2986 3118 0.863956 AAAACACCCCCTCCCATGAA 59.136 50.000 0.00 0.00 0.00 2.57
2987 3119 0.114168 CAAAACACCCCCTCCCATGA 59.886 55.000 0.00 0.00 0.00 3.07
2988 3120 0.904394 CCAAAACACCCCCTCCCATG 60.904 60.000 0.00 0.00 0.00 3.66
2989 3121 1.376249 ACCAAAACACCCCCTCCCAT 61.376 55.000 0.00 0.00 0.00 4.00
2990 3122 2.014033 GACCAAAACACCCCCTCCCA 62.014 60.000 0.00 0.00 0.00 4.37
2993 3125 1.179174 GCTGACCAAAACACCCCCTC 61.179 60.000 0.00 0.00 0.00 4.30
2994 3126 1.152546 GCTGACCAAAACACCCCCT 60.153 57.895 0.00 0.00 0.00 4.79
2995 3127 0.831711 ATGCTGACCAAAACACCCCC 60.832 55.000 0.00 0.00 0.00 5.40
2996 3128 0.318120 CATGCTGACCAAAACACCCC 59.682 55.000 0.00 0.00 0.00 4.95
2997 3129 0.318120 CCATGCTGACCAAAACACCC 59.682 55.000 0.00 0.00 0.00 4.61
2998 3130 0.318120 CCCATGCTGACCAAAACACC 59.682 55.000 0.00 0.00 0.00 4.16
2999 3131 1.000274 GTCCCATGCTGACCAAAACAC 60.000 52.381 2.98 0.00 0.00 3.32
3000 3132 1.327303 GTCCCATGCTGACCAAAACA 58.673 50.000 2.98 0.00 0.00 2.83
3001 3133 0.240945 CGTCCCATGCTGACCAAAAC 59.759 55.000 7.72 0.00 0.00 2.43
3002 3134 0.893270 CCGTCCCATGCTGACCAAAA 60.893 55.000 7.72 0.00 0.00 2.44
3038 3170 1.597854 CACCTGCCAGTTGCTCGAA 60.598 57.895 0.00 0.00 42.00 3.71
3039 3171 2.031012 CACCTGCCAGTTGCTCGA 59.969 61.111 0.00 0.00 42.00 4.04
3055 3187 6.294361 TCAACTTAACTAATAGGCAGAGCA 57.706 37.500 0.00 0.00 0.00 4.26
3116 6633 2.482721 CGGTTTCGGCATGTTTTCTAGT 59.517 45.455 0.00 0.00 0.00 2.57
3137 6654 9.758651 AAACCAGTATTGTTTCTTGTTTATTCC 57.241 29.630 0.00 0.00 31.16 3.01
3169 6686 0.761187 ACCTCATGATCCCACATCCG 59.239 55.000 0.00 0.00 0.00 4.18
3568 7098 2.147150 GCTCGAATTATCTTCTGGGGC 58.853 52.381 0.00 0.00 0.00 5.80
3685 7215 3.430862 GGCGTGCGAATTGAGCCA 61.431 61.111 0.00 0.00 46.48 4.75
3700 7230 1.297664 TTGCTGCAACAAAACATGGC 58.702 45.000 11.69 0.00 0.00 4.40
3720 7250 5.561919 CGAACTACAGGCTGTTTAATTGCAA 60.562 40.000 27.24 0.00 0.00 4.08
3837 7367 6.017275 GCAGATCCATCTCAGAAGGTAAATTG 60.017 42.308 0.00 0.00 34.22 2.32
3859 7389 3.253371 ACTTGTTTTTGATCGACGCAG 57.747 42.857 0.00 0.00 0.00 5.18
3890 7423 4.685169 TTCTCGCTTTTCAACCATGATC 57.315 40.909 0.00 0.00 34.96 2.92
3891 7424 5.416952 AGAATTCTCGCTTTTCAACCATGAT 59.583 36.000 0.88 0.00 34.96 2.45
3892 7425 4.761739 AGAATTCTCGCTTTTCAACCATGA 59.238 37.500 0.88 0.00 0.00 3.07
3893 7426 5.051891 AGAATTCTCGCTTTTCAACCATG 57.948 39.130 0.88 0.00 0.00 3.66
3894 7427 5.302357 GAGAATTCTCGCTTTTCAACCAT 57.698 39.130 19.31 0.00 32.78 3.55
3895 7428 4.749245 GAGAATTCTCGCTTTTCAACCA 57.251 40.909 19.31 0.00 32.78 3.67
3935 7469 2.593436 CACCCGAAAACAGCCGGT 60.593 61.111 1.90 0.00 43.93 5.28
3936 7470 2.281208 TCACCCGAAAACAGCCGG 60.281 61.111 0.00 0.00 44.94 6.13
3937 7471 1.234615 ATGTCACCCGAAAACAGCCG 61.235 55.000 0.00 0.00 0.00 5.52
3938 7472 0.958822 AATGTCACCCGAAAACAGCC 59.041 50.000 0.00 0.00 0.00 4.85
3954 7488 0.169672 CAGTTTGGAGCGCAGGAATG 59.830 55.000 11.47 0.00 0.00 2.67
4101 7635 8.514594 CACATGTTGGTACATTTTTCAGTAGAT 58.485 33.333 0.00 0.00 42.29 1.98
4214 7757 8.642908 AACCAAACATTTTAAGTTTACAGAGC 57.357 30.769 0.00 0.00 37.10 4.09
4309 7858 5.549742 ACATCATTTTCTTTTTGGAGGCA 57.450 34.783 0.00 0.00 0.00 4.75
4319 7868 6.272090 ACCACCCCAAAATACATCATTTTCTT 59.728 34.615 0.00 0.00 43.51 2.52
4328 7877 4.488770 ACTGAAACCACCCCAAAATACAT 58.511 39.130 0.00 0.00 0.00 2.29
4336 7886 1.822425 TTCCTACTGAAACCACCCCA 58.178 50.000 0.00 0.00 0.00 4.96
4381 7931 1.244816 GTGGCTAACCTGAACCAACC 58.755 55.000 0.00 0.00 36.63 3.77
4435 7985 1.375523 GTGGAAGACGCCCGTGATT 60.376 57.895 0.00 0.00 0.00 2.57
4480 8030 4.778415 CGAGGACGAGTGTGCCCG 62.778 72.222 0.00 0.00 42.66 6.13
4510 8063 1.305633 CACAGGAGGAGGAGCAGGA 60.306 63.158 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.