Multiple sequence alignment - TraesCS4B01G313900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G313900 chr4B 100.000 6391 0 0 1 6391 603999910 604006300 0.000000e+00 11803.0
1 TraesCS4B01G313900 chr4B 81.529 314 48 8 6027 6335 659535451 659535759 3.830000e-62 250.0
2 TraesCS4B01G313900 chr4B 82.353 85 13 2 800 883 627254990 627254907 8.890000e-09 73.1
3 TraesCS4B01G313900 chr4D 95.102 5513 193 43 893 6391 477863725 477869174 0.000000e+00 8613.0
4 TraesCS4B01G313900 chr4D 85.315 715 28 17 1 676 477863009 477863685 0.000000e+00 667.0
5 TraesCS4B01G313900 chr4D 80.000 90 14 4 800 887 214971782 214971869 5.350000e-06 63.9
6 TraesCS4B01G313900 chr1B 79.843 1146 186 20 983 2088 1713010 1711870 0.000000e+00 795.0
7 TraesCS4B01G313900 chr1B 77.034 1450 259 49 3777 5186 1781985 1783400 0.000000e+00 765.0
8 TraesCS4B01G313900 chr1B 76.881 1462 264 50 3777 5186 1730507 1729068 0.000000e+00 760.0
9 TraesCS4B01G313900 chr1B 76.780 1447 274 44 3777 5186 1845844 1844423 0.000000e+00 754.0
10 TraesCS4B01G313900 chr1B 77.700 1278 231 35 951 2202 1953257 1954506 0.000000e+00 732.0
11 TraesCS4B01G313900 chr1B 76.021 1518 294 50 3777 5248 723321 721828 0.000000e+00 723.0
12 TraesCS4B01G313900 chr1B 75.138 1448 290 49 3777 5174 1971382 1972809 3.270000e-172 616.0
13 TraesCS4B01G313900 chr1B 74.898 1470 272 56 3777 5187 2754294 2752863 1.190000e-161 580.0
14 TraesCS4B01G313900 chr1B 78.078 926 146 39 1012 1885 2064762 2063842 3.390000e-147 532.0
15 TraesCS4B01G313900 chr1B 77.719 938 154 37 999 1885 2087402 2086469 2.040000e-144 523.0
16 TraesCS4B01G313900 chr1B 75.887 1128 210 47 3777 4861 2303446 2302338 2.640000e-143 520.0
17 TraesCS4B01G313900 chr1B 72.608 1526 323 69 3776 5239 2005528 2004036 1.280000e-111 414.0
18 TraesCS4B01G313900 chr1B 82.500 120 9 9 689 807 645366986 645367094 1.900000e-15 95.3
19 TraesCS4B01G313900 chr1B 76.374 182 33 7 2029 2202 2109130 2108951 8.830000e-14 89.8
20 TraesCS4B01G313900 chr1B 80.899 89 13 4 800 886 310825910 310825824 4.140000e-07 67.6
21 TraesCS4B01G313900 chr3A 76.145 1463 245 57 3777 5174 737799756 737801179 0.000000e+00 673.0
22 TraesCS4B01G313900 chr3A 85.464 571 70 8 948 1507 737796961 737797529 3.320000e-162 582.0
23 TraesCS4B01G313900 chr3A 75.991 908 175 31 4306 5186 52196898 52196007 4.580000e-116 429.0
24 TraesCS4B01G313900 chr3A 77.888 502 93 13 3777 4263 692467847 692468345 4.840000e-76 296.0
25 TraesCS4B01G313900 chr3A 74.566 692 148 22 3777 4448 692412818 692413501 1.750000e-70 278.0
26 TraesCS4B01G313900 chr3B 75.709 1305 257 41 925 2199 801304398 801305672 3.300000e-167 599.0
27 TraesCS4B01G313900 chr3B 85.577 520 67 5 1015 1526 815476533 815477052 7.290000e-149 538.0
28 TraesCS4B01G313900 chr3B 74.143 1458 284 55 3777 5180 801315827 801317245 9.500000e-143 518.0
29 TraesCS4B01G313900 chr3B 80.410 439 74 7 937 1364 815503202 815503639 2.220000e-84 324.0
30 TraesCS4B01G313900 chr3B 81.759 307 46 8 1599 1897 815477227 815477531 1.380000e-61 248.0
31 TraesCS4B01G313900 chr3B 76.267 434 69 15 4758 5174 815479575 815479991 3.910000e-47 200.0
32 TraesCS4B01G313900 chr3B 85.577 104 13 2 689 790 820350897 820351000 2.440000e-19 108.0
33 TraesCS4B01G313900 chr3B 83.654 104 17 0 4599 4702 738283931 738284034 1.470000e-16 99.0
34 TraesCS4B01G313900 chr1A 74.932 1464 262 71 3777 5189 3616314 3614905 2.000000e-159 573.0
35 TraesCS4B01G313900 chr1A 80.256 547 86 15 999 1526 1657113 1657656 6.010000e-105 392.0
36 TraesCS4B01G313900 chrUn 74.420 1380 273 56 3849 5173 21801 23155 2.640000e-143 520.0
37 TraesCS4B01G313900 chrUn 78.516 256 51 3 1237 1490 252520813 252520560 1.430000e-36 165.0
38 TraesCS4B01G313900 chrUn 89.394 66 4 3 5492 5554 91676007 91675942 5.310000e-11 80.5
39 TraesCS4B01G313900 chrUn 89.394 66 4 3 5492 5554 441250198 441250263 5.310000e-11 80.5
40 TraesCS4B01G313900 chrUn 80.460 87 11 6 800 883 27746579 27746662 1.920000e-05 62.1
41 TraesCS4B01G313900 chr7D 73.032 1461 306 65 3786 5196 18918496 18917074 9.840000e-118 435.0
42 TraesCS4B01G313900 chr7D 80.573 314 54 6 6032 6341 19589265 19588955 1.070000e-57 235.0
43 TraesCS4B01G313900 chr7D 81.250 240 42 3 6097 6335 568186266 568186503 2.350000e-44 191.0
44 TraesCS4B01G313900 chr7D 89.610 77 6 2 729 805 626199910 626199984 5.270000e-16 97.1
45 TraesCS4B01G313900 chr7D 91.045 67 5 1 734 800 401541990 401542055 8.830000e-14 89.8
46 TraesCS4B01G313900 chr7D 84.615 78 10 2 5489 5565 9703806 9703730 6.870000e-10 76.8
47 TraesCS4B01G313900 chr7D 82.558 86 11 4 800 883 637887942 637888025 8.890000e-09 73.1
48 TraesCS4B01G313900 chr7D 83.333 78 11 2 5489 5565 9461349 9461273 3.200000e-08 71.3
49 TraesCS4B01G313900 chr7D 80.220 91 11 5 797 883 588084786 588084699 1.920000e-05 62.1
50 TraesCS4B01G313900 chr2B 76.444 883 158 27 1270 2128 1395585 1394729 3.540000e-117 433.0
51 TraesCS4B01G313900 chr5D 83.784 333 48 5 6005 6334 474702440 474702111 1.730000e-80 311.0
52 TraesCS4B01G313900 chr5D 74.639 485 98 19 1031 1506 449040702 449040234 2.350000e-44 191.0
53 TraesCS4B01G313900 chr5D 76.636 428 50 25 6005 6386 549507876 549508299 2.350000e-44 191.0
54 TraesCS4B01G313900 chr5D 88.571 70 8 0 729 798 122981955 122981886 1.140000e-12 86.1
55 TraesCS4B01G313900 chr5D 86.957 69 3 4 5503 5570 459929831 459929768 8.890000e-09 73.1
56 TraesCS4B01G313900 chr7B 82.991 341 47 11 6005 6341 622617089 622616756 1.350000e-76 298.0
57 TraesCS4B01G313900 chr7B 73.333 510 97 32 4614 5096 695371871 695371374 1.110000e-32 152.0
58 TraesCS4B01G313900 chr7B 90.476 105 5 4 689 788 131372020 131371916 4.020000e-27 134.0
59 TraesCS4B01G313900 chr7B 86.957 115 13 2 4983 5096 697521333 697521446 1.870000e-25 128.0
60 TraesCS4B01G313900 chr7B 84.426 122 17 2 4976 5096 695914012 695913892 1.130000e-22 119.0
61 TraesCS4B01G313900 chr7B 87.500 104 6 7 691 787 573942460 573942357 5.240000e-21 113.0
62 TraesCS4B01G313900 chr7B 91.549 71 5 1 729 799 648245168 648245099 5.270000e-16 97.1
63 TraesCS4B01G313900 chr1D 81.953 338 56 5 6005 6341 345274274 345273941 1.360000e-71 281.0
64 TraesCS4B01G313900 chr1D 86.275 102 12 2 689 788 463867561 463867662 6.770000e-20 110.0
65 TraesCS4B01G313900 chr1D 90.000 70 7 0 729 798 160423912 160423843 2.450000e-14 91.6
66 TraesCS4B01G313900 chr1D 91.667 60 5 0 6332 6391 389247094 389247153 4.110000e-12 84.2
67 TraesCS4B01G313900 chr5A 81.232 341 56 8 6005 6341 593740574 593740238 1.060000e-67 268.0
68 TraesCS4B01G313900 chr5A 72.741 664 144 27 1239 1881 567925899 567925252 8.460000e-44 189.0
69 TraesCS4B01G313900 chr5A 82.500 120 17 3 6003 6120 169806562 169806445 1.130000e-17 102.0
70 TraesCS4B01G313900 chr5A 88.889 72 7 1 5493 5563 706502403 706502474 3.170000e-13 87.9
71 TraesCS4B01G313900 chr3D 75.200 625 114 29 3777 4378 555239653 555240259 2.290000e-64 257.0
72 TraesCS4B01G313900 chr2D 81.579 304 45 7 6096 6391 185354351 185354651 2.300000e-59 241.0
73 TraesCS4B01G313900 chr2D 81.557 244 40 5 6147 6388 344345729 344345489 5.050000e-46 196.0
74 TraesCS4B01G313900 chr2D 88.350 103 10 2 688 789 526157377 526157478 8.700000e-24 122.0
75 TraesCS4B01G313900 chr7A 77.586 348 50 14 6069 6391 655452455 655452799 1.090000e-42 185.0
76 TraesCS4B01G313900 chr7A 86.087 115 8 6 681 788 20672678 20672791 4.050000e-22 117.0
77 TraesCS4B01G313900 chr2A 77.135 363 51 17 6005 6341 194664667 194664311 1.420000e-41 182.0
78 TraesCS4B01G313900 chr2A 87.387 111 10 3 681 788 601704602 601704711 2.420000e-24 124.0
79 TraesCS4B01G313900 chr4A 89.109 101 9 2 689 788 726401264 726401165 2.420000e-24 124.0
80 TraesCS4B01G313900 chr5B 92.683 82 6 0 800 881 348582400 348582481 1.130000e-22 119.0
81 TraesCS4B01G313900 chr5B 87.379 103 11 2 689 790 626254265 626254164 4.050000e-22 117.0
82 TraesCS4B01G313900 chr5B 89.189 74 7 1 5493 5566 62043056 62042984 2.450000e-14 91.6
83 TraesCS4B01G313900 chr5B 87.179 78 10 0 730 807 249556607 249556530 8.830000e-14 89.8
84 TraesCS4B01G313900 chr5B 86.111 72 7 2 650 720 635514831 635514900 2.470000e-09 75.0
85 TraesCS4B01G313900 chr5B 82.759 87 9 6 800 883 352488633 352488716 8.890000e-09 73.1
86 TraesCS4B01G313900 chr6B 90.411 73 7 0 731 803 277620767 277620839 5.270000e-16 97.1
87 TraesCS4B01G313900 chr6B 91.803 61 5 0 729 789 6187660 6187600 1.140000e-12 86.1
88 TraesCS4B01G313900 chr6B 89.855 69 4 3 731 798 317112850 317112916 1.140000e-12 86.1
89 TraesCS4B01G313900 chr6B 86.420 81 7 2 5489 5565 583191510 583191430 1.140000e-12 86.1
90 TraesCS4B01G313900 chr6B 80.233 86 15 2 800 884 441220575 441220491 5.350000e-06 63.9
91 TraesCS4B01G313900 chr6D 83.529 85 12 2 800 883 25888994 25889077 1.910000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G313900 chr4B 603999910 604006300 6390 False 11803.000000 11803 100.0000 1 6391 1 chr4B.!!$F1 6390
1 TraesCS4B01G313900 chr4D 477863009 477869174 6165 False 4640.000000 8613 90.2085 1 6391 2 chr4D.!!$F2 6390
2 TraesCS4B01G313900 chr1B 1711870 1713010 1140 True 795.000000 795 79.8430 983 2088 1 chr1B.!!$R2 1105
3 TraesCS4B01G313900 chr1B 1781985 1783400 1415 False 765.000000 765 77.0340 3777 5186 1 chr1B.!!$F1 1409
4 TraesCS4B01G313900 chr1B 1729068 1730507 1439 True 760.000000 760 76.8810 3777 5186 1 chr1B.!!$R3 1409
5 TraesCS4B01G313900 chr1B 1844423 1845844 1421 True 754.000000 754 76.7800 3777 5186 1 chr1B.!!$R4 1409
6 TraesCS4B01G313900 chr1B 1953257 1954506 1249 False 732.000000 732 77.7000 951 2202 1 chr1B.!!$F2 1251
7 TraesCS4B01G313900 chr1B 721828 723321 1493 True 723.000000 723 76.0210 3777 5248 1 chr1B.!!$R1 1471
8 TraesCS4B01G313900 chr1B 1971382 1972809 1427 False 616.000000 616 75.1380 3777 5174 1 chr1B.!!$F3 1397
9 TraesCS4B01G313900 chr1B 2752863 2754294 1431 True 580.000000 580 74.8980 3777 5187 1 chr1B.!!$R10 1410
10 TraesCS4B01G313900 chr1B 2063842 2064762 920 True 532.000000 532 78.0780 1012 1885 1 chr1B.!!$R6 873
11 TraesCS4B01G313900 chr1B 2086469 2087402 933 True 523.000000 523 77.7190 999 1885 1 chr1B.!!$R7 886
12 TraesCS4B01G313900 chr1B 2302338 2303446 1108 True 520.000000 520 75.8870 3777 4861 1 chr1B.!!$R9 1084
13 TraesCS4B01G313900 chr1B 2004036 2005528 1492 True 414.000000 414 72.6080 3776 5239 1 chr1B.!!$R5 1463
14 TraesCS4B01G313900 chr3A 737796961 737801179 4218 False 627.500000 673 80.8045 948 5174 2 chr3A.!!$F3 4226
15 TraesCS4B01G313900 chr3A 52196007 52196898 891 True 429.000000 429 75.9910 4306 5186 1 chr3A.!!$R1 880
16 TraesCS4B01G313900 chr3A 692412818 692413501 683 False 278.000000 278 74.5660 3777 4448 1 chr3A.!!$F1 671
17 TraesCS4B01G313900 chr3B 801304398 801305672 1274 False 599.000000 599 75.7090 925 2199 1 chr3B.!!$F2 1274
18 TraesCS4B01G313900 chr3B 801315827 801317245 1418 False 518.000000 518 74.1430 3777 5180 1 chr3B.!!$F3 1403
19 TraesCS4B01G313900 chr3B 815476533 815479991 3458 False 328.666667 538 81.2010 1015 5174 3 chr3B.!!$F6 4159
20 TraesCS4B01G313900 chr1A 3614905 3616314 1409 True 573.000000 573 74.9320 3777 5189 1 chr1A.!!$R1 1412
21 TraesCS4B01G313900 chr1A 1657113 1657656 543 False 392.000000 392 80.2560 999 1526 1 chr1A.!!$F1 527
22 TraesCS4B01G313900 chrUn 21801 23155 1354 False 520.000000 520 74.4200 3849 5173 1 chrUn.!!$F1 1324
23 TraesCS4B01G313900 chr7D 18917074 18918496 1422 True 435.000000 435 73.0320 3786 5196 1 chr7D.!!$R3 1410
24 TraesCS4B01G313900 chr2B 1394729 1395585 856 True 433.000000 433 76.4440 1270 2128 1 chr2B.!!$R1 858
25 TraesCS4B01G313900 chr3D 555239653 555240259 606 False 257.000000 257 75.2000 3777 4378 1 chr3D.!!$F1 601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
790 830 0.042131 ATGGGACGGAGGGAGTACAA 59.958 55.0 0.00 0.00 0.00 2.41 F
792 832 0.614134 GGGACGGAGGGAGTACAACT 60.614 60.0 0.00 0.00 0.00 3.16 F
2333 2674 0.930726 AACAAGAGGGGGTTCAACCA 59.069 50.0 9.35 0.00 41.02 3.67 F
4307 4835 0.756903 AGAACGTTATCCGGGGATGG 59.243 55.0 10.48 2.65 42.24 3.51 F
4820 5413 0.317854 GGCGCTTCAAACACTGGAAC 60.318 55.0 7.64 0.00 0.00 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2687 3043 0.888619 CAGCTGGTGTCTCGTAAGGA 59.111 55.000 5.57 0.0 38.47 3.36 R
2693 3049 1.215647 GGGTACAGCTGGTGTCTCG 59.784 63.158 19.93 0.0 40.94 4.04 R
4309 4837 2.174639 TGGGACAGACAACTCATTTGGT 59.825 45.455 0.00 0.0 39.84 3.67 R
5245 5858 0.037326 AACATCGGTCACAGACGCAT 60.037 50.000 0.00 0.0 32.65 4.73 R
6025 6643 0.173935 GCGGGGAAAAATTTACGGGG 59.826 55.000 0.00 0.0 0.00 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.651503 TGACAGGTTGAAGATATCCTCCTC 59.348 45.833 0.00 0.00 30.85 3.71
49 50 4.344679 CCTCACCTCTCATATCTCAAGCTT 59.655 45.833 0.00 0.00 0.00 3.74
63 64 2.564947 TCAAGCTTGAGTCTCCTTCTCC 59.435 50.000 25.16 0.00 32.50 3.71
114 115 4.024641 TCAAGCTCGCGTCGACTTATATTA 60.025 41.667 14.70 0.00 30.74 0.98
155 156 3.366629 TCGCCTTGAGACGAGCTT 58.633 55.556 0.00 0.00 33.69 3.74
156 157 1.213013 TCGCCTTGAGACGAGCTTC 59.787 57.895 0.00 0.00 33.69 3.86
157 158 1.214062 CGCCTTGAGACGAGCTTCT 59.786 57.895 0.00 0.00 0.00 2.85
215 216 6.043243 TCTCCAGATCCAGTTTGTTCTAGTTT 59.957 38.462 0.00 0.00 0.00 2.66
216 217 5.997746 TCCAGATCCAGTTTGTTCTAGTTTG 59.002 40.000 0.00 0.00 0.00 2.93
217 218 5.997746 CCAGATCCAGTTTGTTCTAGTTTGA 59.002 40.000 0.00 0.00 0.00 2.69
219 220 7.148340 CCAGATCCAGTTTGTTCTAGTTTGATC 60.148 40.741 0.00 0.00 0.00 2.92
221 222 5.935945 TCCAGTTTGTTCTAGTTTGATCCA 58.064 37.500 0.00 0.00 0.00 3.41
223 224 5.765182 CCAGTTTGTTCTAGTTTGATCCAGT 59.235 40.000 0.00 0.00 0.00 4.00
225 226 7.201821 CCAGTTTGTTCTAGTTTGATCCAGTTT 60.202 37.037 0.00 0.00 0.00 2.66
226 227 7.645340 CAGTTTGTTCTAGTTTGATCCAGTTTG 59.355 37.037 0.00 0.00 0.00 2.93
227 228 7.339466 AGTTTGTTCTAGTTTGATCCAGTTTGT 59.661 33.333 0.00 0.00 0.00 2.83
228 229 7.639113 TTGTTCTAGTTTGATCCAGTTTGTT 57.361 32.000 0.00 0.00 0.00 2.83
229 230 7.259290 TGTTCTAGTTTGATCCAGTTTGTTC 57.741 36.000 0.00 0.00 0.00 3.18
230 231 7.054124 TGTTCTAGTTTGATCCAGTTTGTTCT 58.946 34.615 0.00 0.00 0.00 3.01
231 232 8.208224 TGTTCTAGTTTGATCCAGTTTGTTCTA 58.792 33.333 0.00 0.00 0.00 2.10
232 233 8.713271 GTTCTAGTTTGATCCAGTTTGTTCTAG 58.287 37.037 0.00 0.00 0.00 2.43
233 234 7.963532 TCTAGTTTGATCCAGTTTGTTCTAGT 58.036 34.615 0.00 0.00 0.00 2.57
234 235 8.429641 TCTAGTTTGATCCAGTTTGTTCTAGTT 58.570 33.333 0.00 0.00 0.00 2.24
235 236 7.881775 AGTTTGATCCAGTTTGTTCTAGTTT 57.118 32.000 0.00 0.00 0.00 2.66
236 237 7.707104 AGTTTGATCCAGTTTGTTCTAGTTTG 58.293 34.615 0.00 0.00 0.00 2.93
237 238 7.556275 AGTTTGATCCAGTTTGTTCTAGTTTGA 59.444 33.333 0.00 0.00 0.00 2.69
238 239 8.352942 GTTTGATCCAGTTTGTTCTAGTTTGAT 58.647 33.333 0.00 0.00 0.00 2.57
239 240 7.672983 TGATCCAGTTTGTTCTAGTTTGATC 57.327 36.000 0.00 0.00 0.00 2.92
240 241 6.655003 TGATCCAGTTTGTTCTAGTTTGATCC 59.345 38.462 0.00 0.00 0.00 3.36
241 242 5.935945 TCCAGTTTGTTCTAGTTTGATCCA 58.064 37.500 0.00 0.00 0.00 3.41
242 243 5.997746 TCCAGTTTGTTCTAGTTTGATCCAG 59.002 40.000 0.00 0.00 0.00 3.86
243 244 5.765182 CCAGTTTGTTCTAGTTTGATCCAGT 59.235 40.000 0.00 0.00 0.00 4.00
244 245 6.263168 CCAGTTTGTTCTAGTTTGATCCAGTT 59.737 38.462 0.00 0.00 0.00 3.16
245 246 7.201821 CCAGTTTGTTCTAGTTTGATCCAGTTT 60.202 37.037 0.00 0.00 0.00 2.66
246 247 7.857885 CAGTTTGTTCTAGTTTGATCCAGTTTC 59.142 37.037 0.00 0.00 0.00 2.78
247 248 7.775561 AGTTTGTTCTAGTTTGATCCAGTTTCT 59.224 33.333 0.00 0.00 0.00 2.52
248 249 8.406297 GTTTGTTCTAGTTTGATCCAGTTTCTT 58.594 33.333 0.00 0.00 0.00 2.52
249 250 8.519799 TTGTTCTAGTTTGATCCAGTTTCTTT 57.480 30.769 0.00 0.00 0.00 2.52
250 251 8.519799 TGTTCTAGTTTGATCCAGTTTCTTTT 57.480 30.769 0.00 0.00 0.00 2.27
251 252 8.621286 TGTTCTAGTTTGATCCAGTTTCTTTTC 58.379 33.333 0.00 0.00 0.00 2.29
252 253 8.841300 GTTCTAGTTTGATCCAGTTTCTTTTCT 58.159 33.333 0.00 0.00 0.00 2.52
253 254 8.980481 TCTAGTTTGATCCAGTTTCTTTTCTT 57.020 30.769 0.00 0.00 0.00 2.52
254 255 8.840321 TCTAGTTTGATCCAGTTTCTTTTCTTG 58.160 33.333 0.00 0.00 0.00 3.02
255 256 7.410120 AGTTTGATCCAGTTTCTTTTCTTGT 57.590 32.000 0.00 0.00 0.00 3.16
256 257 7.260603 AGTTTGATCCAGTTTCTTTTCTTGTG 58.739 34.615 0.00 0.00 0.00 3.33
257 258 7.122650 AGTTTGATCCAGTTTCTTTTCTTGTGA 59.877 33.333 0.00 0.00 0.00 3.58
258 259 6.377327 TGATCCAGTTTCTTTTCTTGTGAC 57.623 37.500 0.00 0.00 0.00 3.67
259 260 6.122277 TGATCCAGTTTCTTTTCTTGTGACT 58.878 36.000 0.00 0.00 0.00 3.41
260 261 6.603201 TGATCCAGTTTCTTTTCTTGTGACTT 59.397 34.615 0.00 0.00 0.00 3.01
261 262 7.773224 TGATCCAGTTTCTTTTCTTGTGACTTA 59.227 33.333 0.00 0.00 0.00 2.24
311 316 6.310197 GTGATTTGTGTGATTCTTCTGCTAC 58.690 40.000 0.00 0.00 0.00 3.58
312 317 5.412594 TGATTTGTGTGATTCTTCTGCTACC 59.587 40.000 0.00 0.00 0.00 3.18
342 366 1.671054 GCAGTGCTTCGCCAGGTAA 60.671 57.895 8.18 0.00 0.00 2.85
350 374 2.159379 GCTTCGCCAGGTAATTTCCTTG 60.159 50.000 0.00 0.00 35.37 3.61
351 375 3.343617 CTTCGCCAGGTAATTTCCTTGA 58.656 45.455 6.40 0.87 35.37 3.02
352 376 2.985896 TCGCCAGGTAATTTCCTTGAG 58.014 47.619 6.40 3.41 35.37 3.02
353 377 2.569853 TCGCCAGGTAATTTCCTTGAGA 59.430 45.455 6.40 5.61 35.37 3.27
355 379 3.017442 GCCAGGTAATTTCCTTGAGACC 58.983 50.000 6.40 0.00 35.37 3.85
356 380 3.561313 GCCAGGTAATTTCCTTGAGACCA 60.561 47.826 6.40 0.00 35.37 4.02
357 381 4.860022 CCAGGTAATTTCCTTGAGACCAT 58.140 43.478 0.00 0.00 35.37 3.55
380 404 7.148103 CCATCTTCTCCAGATTCTTTCCTTTTC 60.148 40.741 0.00 0.00 40.67 2.29
387 411 5.392057 CCAGATTCTTTCCTTTTCTAACGCC 60.392 44.000 0.00 0.00 0.00 5.68
399 423 1.065102 TCTAACGCCGGATCTTTCTCG 59.935 52.381 5.05 0.00 0.00 4.04
443 467 3.993081 GCATATAGGTGATCTGTGTGCTC 59.007 47.826 4.04 0.00 44.22 4.26
464 488 8.388853 GTGCTCTTTTACTAACTATAAACTGCC 58.611 37.037 0.00 0.00 0.00 4.85
518 542 3.197983 ACATTTTGGGATGGAGGGAGTA 58.802 45.455 0.00 0.00 0.00 2.59
539 579 0.249489 GTCCCTGATCGTCCGAATGG 60.249 60.000 0.00 0.00 0.00 3.16
540 580 0.396556 TCCCTGATCGTCCGAATGGA 60.397 55.000 0.00 0.00 43.88 3.41
556 596 4.142622 CGAATGGACTGCATCTGCTTTTTA 60.143 41.667 3.53 0.00 42.66 1.52
559 599 4.905429 TGGACTGCATCTGCTTTTTAGTA 58.095 39.130 3.53 0.00 42.66 1.82
560 600 4.695455 TGGACTGCATCTGCTTTTTAGTAC 59.305 41.667 3.53 0.00 42.66 2.73
566 606 5.298026 TGCATCTGCTTTTTAGTACACACAA 59.702 36.000 3.53 0.00 42.66 3.33
581 621 3.192633 ACACACAAAGTCCAAACAAGACC 59.807 43.478 0.00 0.00 34.67 3.85
585 625 0.841289 AAGTCCAAACAAGACCCGGA 59.159 50.000 0.73 0.00 34.67 5.14
661 701 4.696877 TCTTATCGTTGTGTACTTCCTCGA 59.303 41.667 0.00 0.00 0.00 4.04
676 716 3.120108 TCCTCGATCCCAAAATAAGGGT 58.880 45.455 0.00 0.00 46.82 4.34
677 717 3.135895 TCCTCGATCCCAAAATAAGGGTC 59.864 47.826 0.00 0.00 46.82 4.46
678 718 3.131396 CTCGATCCCAAAATAAGGGTCG 58.869 50.000 5.36 5.36 46.82 4.79
679 719 1.602377 CGATCCCAAAATAAGGGTCGC 59.398 52.381 0.00 0.00 46.82 5.19
680 720 2.745152 CGATCCCAAAATAAGGGTCGCT 60.745 50.000 0.00 0.00 46.82 4.93
681 721 3.493699 CGATCCCAAAATAAGGGTCGCTA 60.494 47.826 0.00 0.00 46.82 4.26
682 722 4.457466 GATCCCAAAATAAGGGTCGCTAA 58.543 43.478 0.00 0.00 46.82 3.09
683 723 4.513406 TCCCAAAATAAGGGTCGCTAAT 57.487 40.909 0.00 0.00 46.82 1.73
684 724 4.862371 TCCCAAAATAAGGGTCGCTAATT 58.138 39.130 0.00 0.00 46.82 1.40
685 725 5.265989 TCCCAAAATAAGGGTCGCTAATTT 58.734 37.500 0.00 0.00 46.82 1.82
686 726 6.424883 TCCCAAAATAAGGGTCGCTAATTTA 58.575 36.000 0.00 0.00 46.82 1.40
687 727 6.544564 TCCCAAAATAAGGGTCGCTAATTTAG 59.455 38.462 0.00 0.00 46.82 1.85
688 728 6.320418 CCCAAAATAAGGGTCGCTAATTTAGT 59.680 38.462 5.38 0.00 41.61 2.24
689 729 7.499895 CCCAAAATAAGGGTCGCTAATTTAGTA 59.500 37.037 5.38 0.00 41.61 1.82
690 730 8.340443 CCAAAATAAGGGTCGCTAATTTAGTAC 58.660 37.037 5.38 4.43 0.00 2.73
691 731 9.106070 CAAAATAAGGGTCGCTAATTTAGTACT 57.894 33.333 0.00 0.00 0.00 2.73
692 732 8.883954 AAATAAGGGTCGCTAATTTAGTACTC 57.116 34.615 0.00 4.54 0.00 2.59
693 733 4.933505 AGGGTCGCTAATTTAGTACTCC 57.066 45.455 0.00 7.48 0.00 3.85
694 734 3.640498 AGGGTCGCTAATTTAGTACTCCC 59.360 47.826 0.00 0.00 0.00 4.30
695 735 3.640498 GGGTCGCTAATTTAGTACTCCCT 59.360 47.826 0.00 0.00 0.00 4.20
696 736 4.261952 GGGTCGCTAATTTAGTACTCCCTC 60.262 50.000 0.00 0.00 0.00 4.30
697 737 4.261952 GGTCGCTAATTTAGTACTCCCTCC 60.262 50.000 0.00 0.00 0.00 4.30
698 738 3.567164 TCGCTAATTTAGTACTCCCTCCG 59.433 47.826 0.00 0.00 0.00 4.63
699 739 3.317430 CGCTAATTTAGTACTCCCTCCGT 59.683 47.826 0.00 0.00 0.00 4.69
700 740 4.556302 CGCTAATTTAGTACTCCCTCCGTC 60.556 50.000 0.00 0.00 0.00 4.79
701 741 4.261952 GCTAATTTAGTACTCCCTCCGTCC 60.262 50.000 0.00 0.00 0.00 4.79
702 742 2.149973 TTTAGTACTCCCTCCGTCCC 57.850 55.000 0.00 0.00 0.00 4.46
703 743 1.002069 TTAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
704 744 1.229131 TAGTACTCCCTCCGTCCCAT 58.771 55.000 0.00 0.00 0.00 4.00
705 745 1.229131 AGTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
706 746 1.572415 AGTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
707 747 2.179424 AGTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
708 748 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
709 749 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
710 750 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
711 751 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
712 752 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
713 753 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
714 754 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
716 756 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
717 757 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
718 758 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
719 759 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
720 760 5.220529 CCGTCCCATAATGTAAGACGTTTTC 60.221 44.000 9.63 0.00 46.62 2.29
721 761 5.499652 CGTCCCATAATGTAAGACGTTTTCG 60.500 44.000 0.00 0.00 43.89 3.46
733 773 2.372148 CGTTTTCGCCACTAACGTTT 57.628 45.000 5.91 0.00 39.64 3.60
734 774 2.707392 CGTTTTCGCCACTAACGTTTT 58.293 42.857 5.91 0.00 39.64 2.43
735 775 3.100089 CGTTTTCGCCACTAACGTTTTT 58.900 40.909 5.91 0.00 39.64 1.94
753 793 4.561735 TTTTTGCCACTAGTGTAGTTGC 57.438 40.909 21.18 16.45 44.93 4.17
758 798 4.561735 GCCACTAGTGTAGTTGCAAAAA 57.438 40.909 21.18 0.00 44.32 1.94
780 820 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
781 821 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
782 822 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
783 823 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
784 824 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
785 825 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
786 826 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
787 827 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
788 828 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
789 829 0.928505 TATGGGACGGAGGGAGTACA 59.071 55.000 0.00 0.00 0.00 2.90
790 830 0.042131 ATGGGACGGAGGGAGTACAA 59.958 55.000 0.00 0.00 0.00 2.41
791 831 0.901580 TGGGACGGAGGGAGTACAAC 60.902 60.000 0.00 0.00 0.00 3.32
792 832 0.614134 GGGACGGAGGGAGTACAACT 60.614 60.000 0.00 0.00 0.00 3.16
793 833 1.264295 GGACGGAGGGAGTACAACTT 58.736 55.000 0.00 0.00 0.00 2.66
794 834 1.622312 GGACGGAGGGAGTACAACTTT 59.378 52.381 0.00 0.00 0.00 2.66
795 835 2.827921 GGACGGAGGGAGTACAACTTTA 59.172 50.000 0.00 0.00 0.00 1.85
796 836 3.119209 GGACGGAGGGAGTACAACTTTAG 60.119 52.174 0.00 0.00 0.00 1.85
797 837 3.504375 ACGGAGGGAGTACAACTTTAGT 58.496 45.455 0.00 0.00 0.00 2.24
798 838 3.257624 ACGGAGGGAGTACAACTTTAGTG 59.742 47.826 0.00 0.00 0.00 2.74
799 839 3.597255 GGAGGGAGTACAACTTTAGTGC 58.403 50.000 0.00 0.00 0.00 4.40
800 840 3.007614 GGAGGGAGTACAACTTTAGTGCA 59.992 47.826 0.00 0.00 0.00 4.57
801 841 4.504340 GGAGGGAGTACAACTTTAGTGCAA 60.504 45.833 0.00 0.00 0.00 4.08
802 842 5.043737 AGGGAGTACAACTTTAGTGCAAA 57.956 39.130 0.00 0.00 0.00 3.68
803 843 5.442391 AGGGAGTACAACTTTAGTGCAAAA 58.558 37.500 0.00 0.00 0.00 2.44
804 844 6.068670 AGGGAGTACAACTTTAGTGCAAAAT 58.931 36.000 0.00 0.00 0.00 1.82
805 845 7.228590 AGGGAGTACAACTTTAGTGCAAAATA 58.771 34.615 0.00 0.00 0.00 1.40
806 846 7.722285 AGGGAGTACAACTTTAGTGCAAAATAA 59.278 33.333 0.00 0.00 0.00 1.40
807 847 8.021396 GGGAGTACAACTTTAGTGCAAAATAAG 58.979 37.037 0.00 0.00 0.00 1.73
808 848 8.021396 GGAGTACAACTTTAGTGCAAAATAAGG 58.979 37.037 0.00 0.00 0.00 2.69
809 849 7.882179 AGTACAACTTTAGTGCAAAATAAGGG 58.118 34.615 0.00 0.00 0.00 3.95
810 850 6.724893 ACAACTTTAGTGCAAAATAAGGGT 57.275 33.333 0.00 0.00 0.00 4.34
811 851 6.745116 ACAACTTTAGTGCAAAATAAGGGTC 58.255 36.000 0.00 0.00 0.00 4.46
812 852 5.622770 ACTTTAGTGCAAAATAAGGGTCG 57.377 39.130 0.00 0.00 0.00 4.79
813 853 4.082949 ACTTTAGTGCAAAATAAGGGTCGC 60.083 41.667 0.00 0.00 0.00 5.19
814 854 2.200373 AGTGCAAAATAAGGGTCGCT 57.800 45.000 0.00 0.00 0.00 4.93
815 855 1.812571 AGTGCAAAATAAGGGTCGCTG 59.187 47.619 0.00 0.00 0.00 5.18
816 856 1.810151 GTGCAAAATAAGGGTCGCTGA 59.190 47.619 0.00 0.00 0.00 4.26
817 857 2.423538 GTGCAAAATAAGGGTCGCTGAT 59.576 45.455 0.00 0.00 0.00 2.90
818 858 3.088532 TGCAAAATAAGGGTCGCTGATT 58.911 40.909 0.00 0.00 0.00 2.57
819 859 3.509575 TGCAAAATAAGGGTCGCTGATTT 59.490 39.130 6.44 6.44 0.00 2.17
820 860 4.702612 TGCAAAATAAGGGTCGCTGATTTA 59.297 37.500 11.64 0.00 0.00 1.40
821 861 5.163663 TGCAAAATAAGGGTCGCTGATTTAG 60.164 40.000 11.64 2.16 0.00 1.85
822 862 5.163652 GCAAAATAAGGGTCGCTGATTTAGT 60.164 40.000 11.64 0.00 0.00 2.24
823 863 6.037830 GCAAAATAAGGGTCGCTGATTTAGTA 59.962 38.462 11.64 0.00 0.00 1.82
824 864 7.407337 CAAAATAAGGGTCGCTGATTTAGTAC 58.593 38.462 11.64 0.00 0.00 2.73
825 865 5.864418 ATAAGGGTCGCTGATTTAGTACA 57.136 39.130 0.00 0.00 0.00 2.90
826 866 4.546829 AAGGGTCGCTGATTTAGTACAA 57.453 40.909 0.00 0.00 0.00 2.41
827 867 3.858247 AGGGTCGCTGATTTAGTACAAC 58.142 45.455 0.00 0.00 0.00 3.32
828 868 3.514309 AGGGTCGCTGATTTAGTACAACT 59.486 43.478 0.00 0.00 0.00 3.16
829 869 4.020485 AGGGTCGCTGATTTAGTACAACTT 60.020 41.667 0.00 0.00 0.00 2.66
830 870 4.694037 GGGTCGCTGATTTAGTACAACTTT 59.306 41.667 0.00 0.00 0.00 2.66
831 871 5.870978 GGGTCGCTGATTTAGTACAACTTTA 59.129 40.000 0.00 0.00 0.00 1.85
855 895 2.979813 GCAAAATTGTACCAAGTCAGCG 59.020 45.455 0.00 0.00 0.00 5.18
857 897 4.219033 CAAAATTGTACCAAGTCAGCGAC 58.781 43.478 0.00 1.15 0.00 5.19
858 898 2.831685 ATTGTACCAAGTCAGCGACA 57.168 45.000 10.52 0.00 34.60 4.35
859 899 1.860676 TTGTACCAAGTCAGCGACAC 58.139 50.000 10.52 1.78 34.60 3.67
860 900 1.037493 TGTACCAAGTCAGCGACACT 58.963 50.000 10.52 0.00 34.60 3.55
861 901 1.411246 TGTACCAAGTCAGCGACACTT 59.589 47.619 10.52 2.45 34.60 3.16
863 903 3.257375 TGTACCAAGTCAGCGACACTTAT 59.743 43.478 10.52 0.93 34.60 1.73
866 906 4.134563 ACCAAGTCAGCGACACTTATTTT 58.865 39.130 10.52 0.00 34.60 1.82
867 907 4.024048 ACCAAGTCAGCGACACTTATTTTG 60.024 41.667 10.52 5.13 34.60 2.44
868 908 4.466828 CAAGTCAGCGACACTTATTTTGG 58.533 43.478 10.52 0.00 34.60 3.28
869 909 3.074412 AGTCAGCGACACTTATTTTGGG 58.926 45.455 10.52 0.00 34.60 4.12
870 910 3.071479 GTCAGCGACACTTATTTTGGGA 58.929 45.455 4.20 0.00 32.09 4.37
871 911 3.689649 GTCAGCGACACTTATTTTGGGAT 59.310 43.478 4.20 0.00 32.09 3.85
872 912 4.873827 GTCAGCGACACTTATTTTGGGATA 59.126 41.667 4.20 0.00 32.09 2.59
873 913 5.006746 GTCAGCGACACTTATTTTGGGATAG 59.993 44.000 4.20 0.00 32.09 2.08
874 914 5.105106 TCAGCGACACTTATTTTGGGATAGA 60.105 40.000 0.00 0.00 0.00 1.98
875 915 5.235186 CAGCGACACTTATTTTGGGATAGAG 59.765 44.000 0.00 0.00 0.00 2.43
876 916 4.511826 GCGACACTTATTTTGGGATAGAGG 59.488 45.833 0.00 0.00 0.00 3.69
877 917 5.057149 CGACACTTATTTTGGGATAGAGGG 58.943 45.833 0.00 0.00 0.00 4.30
878 918 5.163343 CGACACTTATTTTGGGATAGAGGGA 60.163 44.000 0.00 0.00 0.00 4.20
879 919 6.253946 ACACTTATTTTGGGATAGAGGGAG 57.746 41.667 0.00 0.00 0.00 4.30
880 920 5.731678 ACACTTATTTTGGGATAGAGGGAGT 59.268 40.000 0.00 0.00 0.00 3.85
881 921 6.906901 ACACTTATTTTGGGATAGAGGGAGTA 59.093 38.462 0.00 0.00 0.00 2.59
882 922 7.572861 ACACTTATTTTGGGATAGAGGGAGTAT 59.427 37.037 0.00 0.00 0.00 2.12
883 923 8.440771 CACTTATTTTGGGATAGAGGGAGTATT 58.559 37.037 0.00 0.00 0.00 1.89
884 924 9.684702 ACTTATTTTGGGATAGAGGGAGTATTA 57.315 33.333 0.00 0.00 0.00 0.98
890 930 7.713734 TGGGATAGAGGGAGTATTATTTACG 57.286 40.000 0.00 0.00 0.00 3.18
891 931 6.154021 TGGGATAGAGGGAGTATTATTTACGC 59.846 42.308 0.00 0.00 0.00 4.42
1059 1106 4.011698 AGTGCATGCTATGTGATGAAACA 58.988 39.130 20.33 0.00 0.00 2.83
1212 1266 6.596888 TCTTGATCAAAGATCATCTGACAACC 59.403 38.462 9.88 0.00 40.09 3.77
1779 1998 6.094719 CCCGCAAATATATTGTTGGATGATG 58.905 40.000 0.00 0.00 0.00 3.07
1853 2075 9.418045 GAAATGCAAAGCCAAGTTATTACTAAA 57.582 29.630 0.00 0.00 33.17 1.85
1881 2103 2.411935 GGAACGCCGTAAGTTTGCTAAC 60.412 50.000 2.56 2.56 34.36 2.34
1887 2109 3.365666 GCCGTAAGTTTGCTAACCCTTTC 60.366 47.826 7.43 0.00 34.71 2.62
1902 2124 7.808381 GCTAACCCTTTCAAAAGTTCAGTATTC 59.192 37.037 2.09 0.00 34.20 1.75
1904 2127 8.990163 AACCCTTTCAAAAGTTCAGTATTCTA 57.010 30.769 2.09 0.00 34.20 2.10
1964 2219 1.798223 CCAATCACACGGGCGTATATG 59.202 52.381 0.00 0.00 0.00 1.78
2115 2371 5.547465 TCACGATGTTGACAAGGTAAGAAT 58.453 37.500 0.00 0.00 0.00 2.40
2297 2638 1.072505 GGTCAAAGGCTTCCGTCCA 59.927 57.895 0.00 0.00 0.00 4.02
2333 2674 0.930726 AACAAGAGGGGGTTCAACCA 59.069 50.000 9.35 0.00 41.02 3.67
2407 2750 5.353123 TGTTTCACCGATATTTAGCACTTCC 59.647 40.000 0.00 0.00 0.00 3.46
2604 2949 7.770801 TGGTAACACATCGAATGATAGAAAG 57.229 36.000 7.02 0.00 46.17 2.62
2605 2950 6.257849 TGGTAACACATCGAATGATAGAAAGC 59.742 38.462 7.02 0.00 46.17 3.51
2608 2953 6.741992 ACACATCGAATGATAGAAAGCAAA 57.258 33.333 7.02 0.00 32.18 3.68
2609 2954 7.144722 ACACATCGAATGATAGAAAGCAAAA 57.855 32.000 7.02 0.00 32.18 2.44
2610 2955 7.023575 ACACATCGAATGATAGAAAGCAAAAC 58.976 34.615 7.02 0.00 32.18 2.43
2611 2956 7.094634 ACACATCGAATGATAGAAAGCAAAACT 60.095 33.333 7.02 0.00 32.18 2.66
2614 2959 6.611381 TCGAATGATAGAAAGCAAAACTTGG 58.389 36.000 0.00 0.00 39.09 3.61
2615 2960 6.206634 TCGAATGATAGAAAGCAAAACTTGGT 59.793 34.615 0.00 0.00 44.43 3.67
2637 2990 7.284074 TGGTTACAGAAGTATTTTGACCTTCA 58.716 34.615 0.00 0.00 37.62 3.02
2652 3008 6.500684 TGACCTTCAAAGCATCAGAATAAC 57.499 37.500 0.00 0.00 0.00 1.89
2656 3012 5.183713 CCTTCAAAGCATCAGAATAACACCA 59.816 40.000 0.00 0.00 0.00 4.17
2692 3048 9.793259 AATAGAACAAAACTGAGAATGTCCTTA 57.207 29.630 0.00 0.00 0.00 2.69
2693 3049 7.497925 AGAACAAAACTGAGAATGTCCTTAC 57.502 36.000 0.00 0.00 0.00 2.34
2705 3063 0.889306 GTCCTTACGAGACACCAGCT 59.111 55.000 0.00 0.00 34.27 4.24
2781 3139 9.658799 TGGATGAATACTTTTCAAAACAAAACA 57.341 25.926 0.00 0.00 31.55 2.83
2855 3213 7.524717 AAATTTACATGGCCCTATATGTGAC 57.475 36.000 14.97 0.00 37.98 3.67
2870 3228 9.916397 CCTATATGTGACAACGAAAGAAAATAC 57.084 33.333 0.00 0.00 0.00 1.89
2927 3285 5.565509 TCATACCTCAGTTTTGGTGCATAA 58.434 37.500 0.00 0.00 37.74 1.90
2966 3324 6.407202 ACTGATACATGGTTTCTTCTGGTAC 58.593 40.000 0.00 0.00 0.00 3.34
2988 3346 1.343142 TGAGAAGAAACTAGGCGTGCA 59.657 47.619 0.00 0.00 0.00 4.57
3069 3428 8.741101 TTTGATGTAAGATGTTAACACAATGC 57.259 30.769 11.22 4.15 36.16 3.56
3080 3439 9.603298 GATGTTAACACAATGCATCTATACATG 57.397 33.333 11.22 0.00 36.16 3.21
3497 3885 2.611518 GAACAGGTCGGAGATGTTCTG 58.388 52.381 20.12 7.17 46.79 3.02
3639 4056 8.678593 TGTATCTGAACGATAGAATAGACACT 57.321 34.615 0.00 0.00 35.34 3.55
3641 4058 9.388346 GTATCTGAACGATAGAATAGACACTTG 57.612 37.037 0.00 0.00 35.34 3.16
3643 4060 7.473366 TCTGAACGATAGAATAGACACTTGAC 58.527 38.462 0.00 0.00 41.38 3.18
4307 4835 0.756903 AGAACGTTATCCGGGGATGG 59.243 55.000 10.48 2.65 42.24 3.51
4308 4836 0.754472 GAACGTTATCCGGGGATGGA 59.246 55.000 10.48 0.00 43.58 3.41
4309 4837 1.139455 GAACGTTATCCGGGGATGGAA 59.861 52.381 10.48 0.00 42.46 3.53
4310 4838 0.466963 ACGTTATCCGGGGATGGAAC 59.533 55.000 10.48 6.84 42.46 3.62
4398 4938 6.039047 AGGACAAATAGAGCATGCATGTTAAG 59.961 38.462 26.79 11.73 0.00 1.85
4413 4953 3.343617 TGTTAAGCATACCAAGAGCACC 58.656 45.455 0.00 0.00 0.00 5.01
4422 4962 5.336372 GCATACCAAGAGCACCAAATAAACA 60.336 40.000 0.00 0.00 0.00 2.83
4430 4973 3.057596 AGCACCAAATAAACATCACCGTG 60.058 43.478 0.00 0.00 0.00 4.94
4498 5044 1.448985 TTGACCTTATCAACCTGCGC 58.551 50.000 0.00 0.00 42.62 6.09
4520 5066 1.873591 ACATAAATTCCGGCTCATCGC 59.126 47.619 0.00 0.00 38.13 4.58
4527 5073 2.892425 CGGCTCATCGCAGTTCCC 60.892 66.667 0.00 0.00 41.67 3.97
4820 5413 0.317854 GGCGCTTCAAACACTGGAAC 60.318 55.000 7.64 0.00 0.00 3.62
4869 5462 2.689983 CAGATTGGATGGTTGGTAAGCC 59.310 50.000 0.00 0.00 0.00 4.35
4888 5481 2.359975 GACGGTGGCCCAAAGGAG 60.360 66.667 0.00 0.00 33.47 3.69
5245 5858 6.310941 TCTTTCATGTCCTGTTTTCCCATTA 58.689 36.000 0.00 0.00 0.00 1.90
5255 5868 3.190327 TGTTTTCCCATTATGCGTCTGTG 59.810 43.478 0.00 0.00 0.00 3.66
5256 5869 3.342377 TTTCCCATTATGCGTCTGTGA 57.658 42.857 0.00 0.00 0.00 3.58
5259 5872 0.930310 CCATTATGCGTCTGTGACCG 59.070 55.000 0.00 0.00 0.00 4.79
5300 5913 0.825010 CTGCTTGTGTTTGGCCTCCT 60.825 55.000 3.32 0.00 0.00 3.69
5318 5931 1.202651 CCTTTGGACCCGGTAGCTATG 60.203 57.143 0.00 0.00 0.00 2.23
5324 5937 0.689745 ACCCGGTAGCTATGCAGGAA 60.690 55.000 0.00 0.00 0.00 3.36
5419 6032 1.600916 AAAACTGCTGCCTCCCGAC 60.601 57.895 0.00 0.00 0.00 4.79
5505 6118 1.736365 GCTAGCTACTCCCCACGTCC 61.736 65.000 7.70 0.00 0.00 4.79
5723 6338 5.050295 TGTTCGTCACGCAAAATGTGTATTA 60.050 36.000 0.00 0.00 39.36 0.98
5784 6399 6.969043 TGGGTGTTTCTCCTGATAATACAAT 58.031 36.000 0.00 0.00 0.00 2.71
5801 6416 4.192429 ACAATTGCAACCCAGCTAATTC 57.808 40.909 0.00 0.00 34.99 2.17
5804 6419 4.888326 ATTGCAACCCAGCTAATTCAAA 57.112 36.364 0.00 0.00 34.99 2.69
5844 6461 8.539770 AGCATGTACTAGCATGTATTATGTTC 57.460 34.615 11.66 0.00 45.75 3.18
5867 6484 6.503524 TCTGTTTTCTTAATGTTTGTGCTCC 58.496 36.000 0.00 0.00 0.00 4.70
5937 6554 3.125316 GCGGTCCTTATTGTTCTGTTGAG 59.875 47.826 0.00 0.00 0.00 3.02
5946 6563 8.070171 CCTTATTGTTCTGTTGAGTGTACAAAG 58.930 37.037 0.00 0.00 0.00 2.77
5958 6576 9.530129 GTTGAGTGTACAAAGAAATTCTTATCG 57.470 33.333 8.83 3.75 35.27 2.92
5959 6577 7.739295 TGAGTGTACAAAGAAATTCTTATCGC 58.261 34.615 8.83 6.72 35.27 4.58
5995 6613 2.032377 TGTTCATCGGTTCGTTCTTTGC 60.032 45.455 0.00 0.00 0.00 3.68
6015 6633 3.071602 TGCTACTTCCATTAGGGCATCTC 59.928 47.826 0.00 0.00 36.21 2.75
6025 6643 2.134789 AGGGCATCTCCAATGTCAAC 57.865 50.000 0.00 0.00 36.21 3.18
6047 6665 2.093921 CCCGTAAATTTTTCCCCGCATT 60.094 45.455 0.00 0.00 0.00 3.56
6049 6667 2.849473 CGTAAATTTTTCCCCGCATTCG 59.151 45.455 0.00 0.00 0.00 3.34
6051 6669 2.647529 AATTTTTCCCCGCATTCGTC 57.352 45.000 0.00 0.00 0.00 4.20
6052 6670 0.815095 ATTTTTCCCCGCATTCGTCC 59.185 50.000 0.00 0.00 0.00 4.79
6053 6671 1.579084 TTTTTCCCCGCATTCGTCCG 61.579 55.000 0.00 0.00 0.00 4.79
6060 6678 3.538841 GCATTCGTCCGCGGATAG 58.461 61.111 33.58 27.12 33.95 2.08
6061 6679 2.022129 GCATTCGTCCGCGGATAGG 61.022 63.158 33.58 22.92 33.95 2.57
6062 6680 1.372997 CATTCGTCCGCGGATAGGG 60.373 63.158 33.58 20.33 33.95 3.53
6095 6713 3.379445 ACGGATGCGGGAGAACGT 61.379 61.111 12.44 0.00 35.98 3.99
6099 6717 0.387929 GGATGCGGGAGAACGTCATA 59.612 55.000 0.00 0.00 33.25 2.15
6111 6729 1.459450 ACGTCATACCAACATTGCCC 58.541 50.000 0.00 0.00 0.00 5.36
6143 6761 7.672983 TTGCAAACACTTTTTCAATAAACCA 57.327 28.000 0.00 0.00 0.00 3.67
6146 6764 7.064016 TGCAAACACTTTTTCAATAAACCAGAC 59.936 33.333 0.00 0.00 0.00 3.51
6165 6783 5.050634 CCAGACAAAATTCATGCAAACACAG 60.051 40.000 0.00 0.00 0.00 3.66
6181 6799 6.020678 GCAAACACAGCGGATTTCATATAAAC 60.021 38.462 0.00 0.00 0.00 2.01
6193 6811 7.801783 GGATTTCATATAAACCGGACGAAATTC 59.198 37.037 9.46 6.48 33.14 2.17
6246 6864 2.945008 GCTAAAGCTATGTGCATGTCCA 59.055 45.455 0.00 0.00 45.94 4.02
6251 6869 1.740380 GCTATGTGCATGTCCAGTCGT 60.740 52.381 0.00 0.00 42.31 4.34
6276 6894 1.552337 AGCTCCATTCTCACGACACAT 59.448 47.619 0.00 0.00 0.00 3.21
6332 6950 0.034089 CCCTTGTCTTCCCCATGTCC 60.034 60.000 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 5.273674 TCAAGCTTGAGATATGAGAGGTG 57.726 43.478 25.16 0.00 32.50 4.00
49 50 0.036448 ACGACGGAGAAGGAGACTCA 59.964 55.000 4.53 0.00 42.68 3.41
61 62 2.882761 CAGGTATAATCTGGACGACGGA 59.117 50.000 0.00 0.00 39.23 4.69
63 64 4.036498 AGTTCAGGTATAATCTGGACGACG 59.964 45.833 9.05 0.00 43.60 5.12
155 156 7.420800 GTCAAAGAAAAGAAAGAATCTGCAGA 58.579 34.615 20.79 20.79 38.79 4.26
156 157 6.640092 GGTCAAAGAAAAGAAAGAATCTGCAG 59.360 38.462 7.63 7.63 38.79 4.41
157 158 6.461509 GGGTCAAAGAAAAGAAAGAATCTGCA 60.462 38.462 0.00 0.00 38.79 4.41
195 196 6.881602 GGATCAAACTAGAACAAACTGGATCT 59.118 38.462 0.00 0.00 0.00 2.75
215 216 6.655003 GGATCAAACTAGAACAAACTGGATCA 59.345 38.462 0.00 0.00 31.48 2.92
216 217 6.655003 TGGATCAAACTAGAACAAACTGGATC 59.345 38.462 0.00 0.00 0.00 3.36
217 218 6.542821 TGGATCAAACTAGAACAAACTGGAT 58.457 36.000 0.00 0.00 0.00 3.41
219 220 5.765182 ACTGGATCAAACTAGAACAAACTGG 59.235 40.000 0.00 0.00 0.00 4.00
221 222 7.775561 AGAAACTGGATCAAACTAGAACAAACT 59.224 33.333 0.00 0.00 0.00 2.66
223 224 8.519799 AAGAAACTGGATCAAACTAGAACAAA 57.480 30.769 0.00 0.00 0.00 2.83
225 226 8.519799 AAAAGAAACTGGATCAAACTAGAACA 57.480 30.769 0.00 0.00 0.00 3.18
226 227 8.841300 AGAAAAGAAACTGGATCAAACTAGAAC 58.159 33.333 0.00 0.00 0.00 3.01
227 228 8.980481 AGAAAAGAAACTGGATCAAACTAGAA 57.020 30.769 0.00 0.00 0.00 2.10
228 229 8.840321 CAAGAAAAGAAACTGGATCAAACTAGA 58.160 33.333 0.00 0.00 0.00 2.43
229 230 8.624776 ACAAGAAAAGAAACTGGATCAAACTAG 58.375 33.333 0.00 0.00 0.00 2.57
230 231 8.405531 CACAAGAAAAGAAACTGGATCAAACTA 58.594 33.333 0.00 0.00 0.00 2.24
231 232 7.122650 TCACAAGAAAAGAAACTGGATCAAACT 59.877 33.333 0.00 0.00 0.00 2.66
232 233 7.220875 GTCACAAGAAAAGAAACTGGATCAAAC 59.779 37.037 0.00 0.00 0.00 2.93
233 234 7.122650 AGTCACAAGAAAAGAAACTGGATCAAA 59.877 33.333 0.00 0.00 0.00 2.69
234 235 6.603201 AGTCACAAGAAAAGAAACTGGATCAA 59.397 34.615 0.00 0.00 0.00 2.57
235 236 6.122277 AGTCACAAGAAAAGAAACTGGATCA 58.878 36.000 0.00 0.00 0.00 2.92
236 237 6.625873 AGTCACAAGAAAAGAAACTGGATC 57.374 37.500 0.00 0.00 0.00 3.36
237 238 7.556275 TGTAAGTCACAAGAAAAGAAACTGGAT 59.444 33.333 0.00 0.00 32.95 3.41
238 239 6.882140 TGTAAGTCACAAGAAAAGAAACTGGA 59.118 34.615 0.00 0.00 32.95 3.86
239 240 6.967199 GTGTAAGTCACAAGAAAAGAAACTGG 59.033 38.462 0.00 0.00 45.51 4.00
240 241 7.954906 GTGTAAGTCACAAGAAAAGAAACTG 57.045 36.000 0.00 0.00 45.51 3.16
254 255 4.511454 TGCAGTTGATTCAGTGTAAGTCAC 59.489 41.667 0.00 0.00 46.46 3.67
255 256 4.702831 TGCAGTTGATTCAGTGTAAGTCA 58.297 39.130 0.00 0.00 0.00 3.41
256 257 5.869753 ATGCAGTTGATTCAGTGTAAGTC 57.130 39.130 0.00 0.00 0.00 3.01
257 258 6.230472 TGTATGCAGTTGATTCAGTGTAAGT 58.770 36.000 0.00 0.00 0.00 2.24
258 259 6.183360 CCTGTATGCAGTTGATTCAGTGTAAG 60.183 42.308 10.09 0.00 41.02 2.34
259 260 5.643348 CCTGTATGCAGTTGATTCAGTGTAA 59.357 40.000 10.09 0.00 41.02 2.41
260 261 5.178061 CCTGTATGCAGTTGATTCAGTGTA 58.822 41.667 10.09 0.00 41.02 2.90
261 262 4.005650 CCTGTATGCAGTTGATTCAGTGT 58.994 43.478 10.09 0.00 41.02 3.55
272 273 1.885049 ATCACCTCCCTGTATGCAGT 58.115 50.000 10.09 0.00 41.02 4.40
273 274 2.947652 CAAATCACCTCCCTGTATGCAG 59.052 50.000 3.45 3.45 42.22 4.41
311 316 1.006832 GCACTGCTGTAATACGGTGG 58.993 55.000 0.81 0.00 42.31 4.61
312 317 2.010145 AGCACTGCTGTAATACGGTG 57.990 50.000 1.67 0.00 44.38 4.94
342 366 4.537688 TGGAGAAGATGGTCTCAAGGAAAT 59.462 41.667 4.71 0.00 45.03 2.17
350 374 5.612725 AAGAATCTGGAGAAGATGGTCTC 57.387 43.478 0.00 0.00 45.37 3.36
351 375 5.104569 GGAAAGAATCTGGAGAAGATGGTCT 60.105 44.000 0.00 0.00 45.37 3.85
352 376 5.104569 AGGAAAGAATCTGGAGAAGATGGTC 60.105 44.000 0.00 0.00 45.37 4.02
353 377 4.787534 AGGAAAGAATCTGGAGAAGATGGT 59.212 41.667 0.00 0.00 45.37 3.55
355 379 7.611079 AGAAAAGGAAAGAATCTGGAGAAGATG 59.389 37.037 0.00 0.00 45.37 2.90
357 381 7.084268 AGAAAAGGAAAGAATCTGGAGAAGA 57.916 36.000 0.00 0.00 39.94 2.87
380 404 1.478137 CGAGAAAGATCCGGCGTTAG 58.522 55.000 6.01 0.00 0.00 2.34
387 411 1.327690 TGGGTCCCGAGAAAGATCCG 61.328 60.000 2.65 0.00 35.92 4.18
399 423 4.083862 GACTGAGCGGTGGGTCCC 62.084 72.222 0.00 0.00 39.95 4.46
464 488 3.317150 TGACACTTGCTCTGTTGTATCG 58.683 45.455 0.00 0.00 0.00 2.92
518 542 1.035932 ATTCGGACGATCAGGGACGT 61.036 55.000 0.00 0.00 45.32 4.34
539 579 5.179368 TGTGTACTAAAAAGCAGATGCAGTC 59.821 40.000 7.68 0.00 45.16 3.51
540 580 5.049405 GTGTGTACTAAAAAGCAGATGCAGT 60.049 40.000 7.68 3.96 45.16 4.40
548 588 5.648526 TGGACTTTGTGTGTACTAAAAAGCA 59.351 36.000 11.11 3.19 32.33 3.91
556 596 5.123344 GTCTTGTTTGGACTTTGTGTGTACT 59.877 40.000 0.00 0.00 0.00 2.73
559 599 3.192633 GGTCTTGTTTGGACTTTGTGTGT 59.807 43.478 0.00 0.00 34.47 3.72
560 600 3.428862 GGGTCTTGTTTGGACTTTGTGTG 60.429 47.826 0.00 0.00 34.47 3.82
566 606 0.841289 TCCGGGTCTTGTTTGGACTT 59.159 50.000 0.00 0.00 34.47 3.01
581 621 1.922570 CAGGACTCGTATTGTTCCGG 58.077 55.000 0.00 0.00 0.00 5.14
676 716 3.567164 CGGAGGGAGTACTAAATTAGCGA 59.433 47.826 0.00 0.00 0.00 4.93
677 717 3.317430 ACGGAGGGAGTACTAAATTAGCG 59.683 47.826 0.00 0.00 0.00 4.26
678 718 4.261952 GGACGGAGGGAGTACTAAATTAGC 60.262 50.000 0.00 0.00 0.00 3.09
679 719 4.280425 GGGACGGAGGGAGTACTAAATTAG 59.720 50.000 0.00 0.00 0.00 1.73
680 720 4.218312 GGGACGGAGGGAGTACTAAATTA 58.782 47.826 0.00 0.00 0.00 1.40
681 721 3.036819 GGGACGGAGGGAGTACTAAATT 58.963 50.000 0.00 0.00 0.00 1.82
682 722 2.023695 TGGGACGGAGGGAGTACTAAAT 60.024 50.000 0.00 0.00 0.00 1.40
683 723 1.358787 TGGGACGGAGGGAGTACTAAA 59.641 52.381 0.00 0.00 0.00 1.85
684 724 1.002069 TGGGACGGAGGGAGTACTAA 58.998 55.000 0.00 0.00 0.00 2.24
685 725 1.229131 ATGGGACGGAGGGAGTACTA 58.771 55.000 0.00 0.00 0.00 1.82
686 726 1.229131 TATGGGACGGAGGGAGTACT 58.771 55.000 0.00 0.00 0.00 2.73
687 727 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
688 728 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
689 729 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
690 730 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
691 731 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
692 732 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
693 733 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
694 734 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
695 735 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
698 738 5.725864 GCGAAAACGTCTTACATTATGGGAC 60.726 44.000 0.00 1.75 0.00 4.46
699 739 4.330620 GCGAAAACGTCTTACATTATGGGA 59.669 41.667 0.00 0.00 0.00 4.37
700 740 4.495184 GGCGAAAACGTCTTACATTATGGG 60.495 45.833 0.00 0.00 0.00 4.00
701 741 4.093703 TGGCGAAAACGTCTTACATTATGG 59.906 41.667 0.00 0.00 0.00 2.74
702 742 5.019498 GTGGCGAAAACGTCTTACATTATG 58.981 41.667 0.00 0.00 0.00 1.90
703 743 4.933400 AGTGGCGAAAACGTCTTACATTAT 59.067 37.500 0.00 0.00 0.00 1.28
704 744 4.309099 AGTGGCGAAAACGTCTTACATTA 58.691 39.130 0.00 0.00 0.00 1.90
705 745 3.135994 AGTGGCGAAAACGTCTTACATT 58.864 40.909 0.00 0.00 0.00 2.71
706 746 2.762745 AGTGGCGAAAACGTCTTACAT 58.237 42.857 0.00 0.00 0.00 2.29
707 747 2.228138 AGTGGCGAAAACGTCTTACA 57.772 45.000 0.00 0.00 0.00 2.41
708 748 3.420927 CGTTAGTGGCGAAAACGTCTTAC 60.421 47.826 8.76 0.00 40.69 2.34
709 749 2.725723 CGTTAGTGGCGAAAACGTCTTA 59.274 45.455 8.76 0.00 40.69 2.10
710 750 1.523934 CGTTAGTGGCGAAAACGTCTT 59.476 47.619 8.76 0.00 40.69 3.01
711 751 1.134226 CGTTAGTGGCGAAAACGTCT 58.866 50.000 8.76 0.00 40.69 4.18
712 752 3.626542 CGTTAGTGGCGAAAACGTC 57.373 52.632 8.76 0.00 40.69 4.34
755 795 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
756 796 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
757 797 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
758 798 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
759 799 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
761 801 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
762 802 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
763 803 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
764 804 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
765 805 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
766 806 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
767 807 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
768 808 2.090943 TGTACTCCCTCCGTCCCATAAT 60.091 50.000 0.00 0.00 0.00 1.28
769 809 1.288633 TGTACTCCCTCCGTCCCATAA 59.711 52.381 0.00 0.00 0.00 1.90
770 810 0.928505 TGTACTCCCTCCGTCCCATA 59.071 55.000 0.00 0.00 0.00 2.74
771 811 0.042131 TTGTACTCCCTCCGTCCCAT 59.958 55.000 0.00 0.00 0.00 4.00
772 812 0.901580 GTTGTACTCCCTCCGTCCCA 60.902 60.000 0.00 0.00 0.00 4.37
773 813 0.614134 AGTTGTACTCCCTCCGTCCC 60.614 60.000 0.00 0.00 0.00 4.46
774 814 1.264295 AAGTTGTACTCCCTCCGTCC 58.736 55.000 0.00 0.00 0.00 4.79
775 815 3.509184 ACTAAAGTTGTACTCCCTCCGTC 59.491 47.826 0.00 0.00 0.00 4.79
776 816 3.257624 CACTAAAGTTGTACTCCCTCCGT 59.742 47.826 0.00 0.00 0.00 4.69
777 817 3.846360 CACTAAAGTTGTACTCCCTCCG 58.154 50.000 0.00 0.00 0.00 4.63
778 818 3.007614 TGCACTAAAGTTGTACTCCCTCC 59.992 47.826 0.00 0.00 0.00 4.30
779 819 4.267349 TGCACTAAAGTTGTACTCCCTC 57.733 45.455 0.00 0.00 0.00 4.30
780 820 4.699925 TTGCACTAAAGTTGTACTCCCT 57.300 40.909 0.00 0.00 0.00 4.20
781 821 5.761165 TTTTGCACTAAAGTTGTACTCCC 57.239 39.130 0.00 0.00 0.00 4.30
782 822 8.021396 CCTTATTTTGCACTAAAGTTGTACTCC 58.979 37.037 0.00 0.00 0.00 3.85
783 823 8.021396 CCCTTATTTTGCACTAAAGTTGTACTC 58.979 37.037 0.00 0.00 0.00 2.59
784 824 7.504574 ACCCTTATTTTGCACTAAAGTTGTACT 59.495 33.333 0.00 0.00 0.00 2.73
785 825 7.654568 ACCCTTATTTTGCACTAAAGTTGTAC 58.345 34.615 0.00 0.00 0.00 2.90
786 826 7.308109 CGACCCTTATTTTGCACTAAAGTTGTA 60.308 37.037 0.00 0.00 0.00 2.41
787 827 6.514376 CGACCCTTATTTTGCACTAAAGTTGT 60.514 38.462 0.00 0.00 0.00 3.32
788 828 5.856455 CGACCCTTATTTTGCACTAAAGTTG 59.144 40.000 0.00 0.00 0.00 3.16
789 829 5.564063 GCGACCCTTATTTTGCACTAAAGTT 60.564 40.000 0.00 0.00 0.00 2.66
790 830 4.082949 GCGACCCTTATTTTGCACTAAAGT 60.083 41.667 0.00 0.00 0.00 2.66
791 831 4.156008 AGCGACCCTTATTTTGCACTAAAG 59.844 41.667 0.00 0.00 0.00 1.85
792 832 4.076394 AGCGACCCTTATTTTGCACTAAA 58.924 39.130 0.00 0.00 0.00 1.85
793 833 3.438781 CAGCGACCCTTATTTTGCACTAA 59.561 43.478 0.00 0.00 0.00 2.24
794 834 3.006940 CAGCGACCCTTATTTTGCACTA 58.993 45.455 0.00 0.00 0.00 2.74
795 835 1.812571 CAGCGACCCTTATTTTGCACT 59.187 47.619 0.00 0.00 0.00 4.40
796 836 1.810151 TCAGCGACCCTTATTTTGCAC 59.190 47.619 0.00 0.00 0.00 4.57
797 837 2.192664 TCAGCGACCCTTATTTTGCA 57.807 45.000 0.00 0.00 0.00 4.08
798 838 3.782889 AATCAGCGACCCTTATTTTGC 57.217 42.857 0.00 0.00 0.00 3.68
799 839 6.436843 ACTAAATCAGCGACCCTTATTTTG 57.563 37.500 0.00 0.00 31.60 2.44
800 840 7.107542 TGTACTAAATCAGCGACCCTTATTTT 58.892 34.615 0.00 0.00 31.60 1.82
801 841 6.646267 TGTACTAAATCAGCGACCCTTATTT 58.354 36.000 0.00 0.00 33.27 1.40
802 842 6.229936 TGTACTAAATCAGCGACCCTTATT 57.770 37.500 0.00 0.00 0.00 1.40
803 843 5.864418 TGTACTAAATCAGCGACCCTTAT 57.136 39.130 0.00 0.00 0.00 1.73
804 844 5.186409 AGTTGTACTAAATCAGCGACCCTTA 59.814 40.000 0.00 0.00 0.00 2.69
805 845 4.020485 AGTTGTACTAAATCAGCGACCCTT 60.020 41.667 0.00 0.00 0.00 3.95
806 846 3.514309 AGTTGTACTAAATCAGCGACCCT 59.486 43.478 0.00 0.00 0.00 4.34
807 847 3.858247 AGTTGTACTAAATCAGCGACCC 58.142 45.455 0.00 0.00 0.00 4.46
808 848 5.857822 AAAGTTGTACTAAATCAGCGACC 57.142 39.130 0.00 0.00 0.00 4.79
809 849 7.445836 CACTAAAGTTGTACTAAATCAGCGAC 58.554 38.462 0.00 0.00 0.00 5.19
810 850 6.090358 GCACTAAAGTTGTACTAAATCAGCGA 59.910 38.462 0.00 0.00 0.00 4.93
811 851 6.128661 TGCACTAAAGTTGTACTAAATCAGCG 60.129 38.462 0.00 0.00 0.00 5.18
812 852 7.129109 TGCACTAAAGTTGTACTAAATCAGC 57.871 36.000 0.00 0.00 0.00 4.26
813 853 9.944663 TTTTGCACTAAAGTTGTACTAAATCAG 57.055 29.630 0.00 0.00 0.00 2.90
855 895 6.126739 ACTCCCTCTATCCCAAAATAAGTGTC 60.127 42.308 0.00 0.00 0.00 3.67
857 897 6.253946 ACTCCCTCTATCCCAAAATAAGTG 57.746 41.667 0.00 0.00 0.00 3.16
858 898 8.582891 AATACTCCCTCTATCCCAAAATAAGT 57.417 34.615 0.00 0.00 0.00 2.24
866 906 6.154021 GCGTAAATAATACTCCCTCTATCCCA 59.846 42.308 0.00 0.00 0.00 4.37
867 907 6.406737 GGCGTAAATAATACTCCCTCTATCCC 60.407 46.154 0.00 0.00 0.00 3.85
868 908 6.380560 AGGCGTAAATAATACTCCCTCTATCC 59.619 42.308 0.00 0.00 0.00 2.59
869 909 7.407393 AGGCGTAAATAATACTCCCTCTATC 57.593 40.000 0.00 0.00 0.00 2.08
870 910 7.793948 AAGGCGTAAATAATACTCCCTCTAT 57.206 36.000 0.00 0.00 0.00 1.98
871 911 7.288389 TGAAAGGCGTAAATAATACTCCCTCTA 59.712 37.037 0.00 0.00 0.00 2.43
872 912 6.099269 TGAAAGGCGTAAATAATACTCCCTCT 59.901 38.462 0.00 0.00 0.00 3.69
873 913 6.285990 TGAAAGGCGTAAATAATACTCCCTC 58.714 40.000 0.00 0.00 0.00 4.30
874 914 6.243216 TGAAAGGCGTAAATAATACTCCCT 57.757 37.500 0.00 0.00 0.00 4.20
875 915 6.708949 TCATGAAAGGCGTAAATAATACTCCC 59.291 38.462 0.00 0.00 0.00 4.30
876 916 7.724305 TCATGAAAGGCGTAAATAATACTCC 57.276 36.000 0.00 0.00 0.00 3.85
883 923 9.990360 TGTAGATAATCATGAAAGGCGTAAATA 57.010 29.630 0.00 0.00 0.00 1.40
884 924 8.902540 TGTAGATAATCATGAAAGGCGTAAAT 57.097 30.769 0.00 0.00 0.00 1.40
885 925 7.985184 ACTGTAGATAATCATGAAAGGCGTAAA 59.015 33.333 0.00 0.00 0.00 2.01
886 926 7.497595 ACTGTAGATAATCATGAAAGGCGTAA 58.502 34.615 0.00 0.00 0.00 3.18
887 927 7.050970 ACTGTAGATAATCATGAAAGGCGTA 57.949 36.000 0.00 0.00 0.00 4.42
888 928 5.918608 ACTGTAGATAATCATGAAAGGCGT 58.081 37.500 0.00 0.00 0.00 5.68
889 929 7.653713 AGTTACTGTAGATAATCATGAAAGGCG 59.346 37.037 0.00 0.00 0.00 5.52
890 930 8.894768 AGTTACTGTAGATAATCATGAAAGGC 57.105 34.615 0.00 0.00 0.00 4.35
907 947 6.146673 GCTACACCAATTACGAAAGTTACTGT 59.853 38.462 0.00 0.00 46.40 3.55
1212 1266 1.664016 GCATTGTCAGCAACCACTTCG 60.664 52.381 0.00 0.00 37.44 3.79
1259 1324 2.030562 CTCTTCACGGCCACGGTT 59.969 61.111 2.24 0.00 46.48 4.44
1779 1998 5.900865 TCGGTAATTTTTGGTACCCAATC 57.099 39.130 10.07 0.00 43.55 2.67
1853 2075 1.206371 ACTTACGGCGTTCCAGCTATT 59.794 47.619 21.24 0.00 37.29 1.73
1913 2140 7.651304 TGAGCAAAGTAACAAAATATTGGTGTG 59.349 33.333 5.95 0.00 41.01 3.82
1914 2141 7.721402 TGAGCAAAGTAACAAAATATTGGTGT 58.279 30.769 0.00 0.00 41.01 4.16
1915 2142 8.761575 ATGAGCAAAGTAACAAAATATTGGTG 57.238 30.769 0.00 0.00 41.01 4.17
1964 2219 1.879380 TGCCAAATATCCGCTGCATAC 59.121 47.619 0.00 0.00 0.00 2.39
2209 2466 6.409704 TCTCTAAATCTTTCAGTCATGGTGG 58.590 40.000 0.00 0.00 0.00 4.61
2257 2598 3.568007 CGACCAGAGGTTCAAATCCAAAA 59.432 43.478 0.00 0.00 35.25 2.44
2297 2638 6.183360 CCTCTTGTTCAAATGTGGTTAGTTGT 60.183 38.462 0.00 0.00 0.00 3.32
2389 2732 5.531287 GGATTTGGAAGTGCTAAATATCGGT 59.469 40.000 0.00 0.00 37.74 4.69
2407 2750 3.947910 ACTGCTGATTTGTGGGATTTG 57.052 42.857 0.00 0.00 0.00 2.32
2481 2826 9.270640 TGTTGAATTGAACCATGATTTTAAAGG 57.729 29.630 5.29 0.00 0.00 3.11
2490 2835 6.434965 AGATCACATGTTGAATTGAACCATGA 59.565 34.615 19.05 13.83 37.92 3.07
2591 2936 6.381801 ACCAAGTTTTGCTTTCTATCATTCG 58.618 36.000 0.00 0.00 34.69 3.34
2597 2942 7.817418 TCTGTAACCAAGTTTTGCTTTCTAT 57.183 32.000 0.00 0.00 34.69 1.98
2598 2943 7.338449 ACTTCTGTAACCAAGTTTTGCTTTCTA 59.662 33.333 0.00 0.00 34.69 2.10
2599 2944 6.152831 ACTTCTGTAACCAAGTTTTGCTTTCT 59.847 34.615 0.00 0.00 34.69 2.52
2604 2949 8.539674 CAAAATACTTCTGTAACCAAGTTTTGC 58.460 33.333 0.00 0.00 34.60 3.68
2605 2950 9.796120 TCAAAATACTTCTGTAACCAAGTTTTG 57.204 29.630 0.00 0.00 35.11 2.44
2608 2953 7.778382 AGGTCAAAATACTTCTGTAACCAAGTT 59.222 33.333 0.00 0.00 34.60 2.66
2609 2954 7.287810 AGGTCAAAATACTTCTGTAACCAAGT 58.712 34.615 0.00 0.00 36.75 3.16
2610 2955 7.745620 AGGTCAAAATACTTCTGTAACCAAG 57.254 36.000 0.00 0.00 31.80 3.61
2611 2956 7.776030 TGAAGGTCAAAATACTTCTGTAACCAA 59.224 33.333 0.00 0.00 40.83 3.67
2614 2959 9.665264 CTTTGAAGGTCAAAATACTTCTGTAAC 57.335 33.333 5.06 0.00 44.69 2.50
2615 2960 8.349983 GCTTTGAAGGTCAAAATACTTCTGTAA 58.650 33.333 5.06 0.00 44.69 2.41
2618 2963 6.738114 TGCTTTGAAGGTCAAAATACTTCTG 58.262 36.000 5.06 0.00 44.69 3.02
2619 2964 6.959639 TGCTTTGAAGGTCAAAATACTTCT 57.040 33.333 5.06 0.00 44.69 2.85
2622 2967 6.716628 TCTGATGCTTTGAAGGTCAAAATACT 59.283 34.615 5.06 0.00 44.69 2.12
2623 2968 6.913170 TCTGATGCTTTGAAGGTCAAAATAC 58.087 36.000 5.06 0.00 44.69 1.89
2624 2969 7.523293 TTCTGATGCTTTGAAGGTCAAAATA 57.477 32.000 5.06 0.00 44.69 1.40
2637 2990 6.888632 AGATCTTGGTGTTATTCTGATGCTTT 59.111 34.615 0.00 0.00 0.00 3.51
2652 3008 9.612620 GTTTTGTTCTATTTGTAGATCTTGGTG 57.387 33.333 0.00 0.00 0.00 4.17
2687 3043 0.888619 CAGCTGGTGTCTCGTAAGGA 59.111 55.000 5.57 0.00 38.47 3.36
2692 3048 1.533469 GGGTACAGCTGGTGTCTCGT 61.533 60.000 19.93 0.00 40.94 4.18
2693 3049 1.215647 GGGTACAGCTGGTGTCTCG 59.784 63.158 19.93 0.00 40.94 4.04
2855 3213 3.150731 GGACGCGTATTTTCTTTCGTTG 58.849 45.455 13.97 0.00 0.00 4.10
2870 3228 1.217882 GGGTAATGAGAATGGACGCG 58.782 55.000 3.53 3.53 0.00 6.01
2927 3285 9.865321 CCATGTATCAGTTCAATCAAGAAAAAT 57.135 29.630 0.00 0.00 0.00 1.82
2966 3324 2.611518 CACGCCTAGTTTCTTCTCAGG 58.388 52.381 0.00 0.00 0.00 3.86
3069 3428 8.613060 AATGTGAAACTAGCCATGTATAGATG 57.387 34.615 2.86 2.86 38.04 2.90
3080 3439 7.545615 CCCATCTTTTAAAATGTGAAACTAGCC 59.454 37.037 0.09 0.00 38.04 3.93
3134 3509 5.130292 TCCAACTTTCAACTACCTACGAG 57.870 43.478 0.00 0.00 0.00 4.18
3613 4030 8.779303 AGTGTCTATTCTATCGTTCAGATACAG 58.221 37.037 0.00 0.00 40.66 2.74
3617 4034 8.132362 GTCAAGTGTCTATTCTATCGTTCAGAT 58.868 37.037 0.00 0.00 43.19 2.90
3621 4038 6.693545 CCAGTCAAGTGTCTATTCTATCGTTC 59.306 42.308 0.00 0.00 0.00 3.95
3624 4041 4.979197 GCCAGTCAAGTGTCTATTCTATCG 59.021 45.833 0.00 0.00 0.00 2.92
3632 4049 4.082190 GTGAGTATGCCAGTCAAGTGTCTA 60.082 45.833 0.00 0.00 38.35 2.59
3636 4053 3.325293 AGTGAGTATGCCAGTCAAGTG 57.675 47.619 0.00 0.00 38.35 3.16
3639 4056 4.350368 TTCAAGTGAGTATGCCAGTCAA 57.650 40.909 0.00 0.00 38.35 3.18
3641 4058 5.886960 AATTTCAAGTGAGTATGCCAGTC 57.113 39.130 0.00 0.00 0.00 3.51
3643 4060 7.820648 AGTAAAATTTCAAGTGAGTATGCCAG 58.179 34.615 0.00 0.00 0.00 4.85
4307 4835 3.253432 GGGACAGACAACTCATTTGGTTC 59.747 47.826 0.00 0.00 39.84 3.62
4308 4836 3.222603 GGGACAGACAACTCATTTGGTT 58.777 45.455 0.00 0.00 39.84 3.67
4309 4837 2.174639 TGGGACAGACAACTCATTTGGT 59.825 45.455 0.00 0.00 39.84 3.67
4310 4838 2.862541 TGGGACAGACAACTCATTTGG 58.137 47.619 0.00 0.00 39.84 3.28
4398 4938 4.981806 TTATTTGGTGCTCTTGGTATGC 57.018 40.909 0.00 0.00 0.00 3.14
4413 4953 4.379394 CCTGGACACGGTGATGTTTATTTG 60.379 45.833 16.29 0.00 31.24 2.32
4430 4973 2.749621 CACCAAAATCTAGCACCTGGAC 59.250 50.000 0.00 0.00 0.00 4.02
4498 5044 2.224079 CGATGAGCCGGAATTTATGTGG 59.776 50.000 5.05 0.00 0.00 4.17
4520 5066 5.123186 TGCTTATGTTACGAAATGGGAACTG 59.877 40.000 0.00 0.00 0.00 3.16
4527 5073 4.332543 TCAGCCTGCTTATGTTACGAAATG 59.667 41.667 0.00 0.00 0.00 2.32
4820 5413 1.268386 CGAGCCATTGTAGCAATGCAG 60.268 52.381 8.35 5.40 0.00 4.41
4888 5481 3.118542 CCAGAACAAAAGTTCTTGCAGC 58.881 45.455 8.06 0.00 41.28 5.25
5245 5858 0.037326 AACATCGGTCACAGACGCAT 60.037 50.000 0.00 0.00 32.65 4.73
5255 5868 2.097142 AGTACGTAGCAGAACATCGGTC 59.903 50.000 0.00 0.00 0.00 4.79
5256 5869 2.089980 AGTACGTAGCAGAACATCGGT 58.910 47.619 0.00 0.00 0.00 4.69
5259 5872 3.099362 CGTCAGTACGTAGCAGAACATC 58.901 50.000 0.00 0.00 44.21 3.06
5300 5913 0.179468 GCATAGCTACCGGGTCCAAA 59.821 55.000 6.32 0.00 0.00 3.28
5318 5931 2.496899 TCTTGATTCCCACTTCCTGC 57.503 50.000 0.00 0.00 0.00 4.85
5324 5937 2.092914 GGACCGAATCTTGATTCCCACT 60.093 50.000 15.22 0.00 0.00 4.00
5451 6064 3.485463 TTCGACAGTTCTCCCAACATT 57.515 42.857 0.00 0.00 0.00 2.71
5536 6151 6.875469 ACTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
5627 6242 3.712016 TGCATGGCAGTAAGGTTAGAA 57.288 42.857 0.00 0.00 33.32 2.10
5731 6346 8.462811 TCAATTAAGCAGTGTTAGTGACAAAAA 58.537 29.630 0.00 0.00 40.65 1.94
5735 6350 7.744087 AATCAATTAAGCAGTGTTAGTGACA 57.256 32.000 0.00 0.00 35.42 3.58
5784 6399 4.888326 ATTTGAATTAGCTGGGTTGCAA 57.112 36.364 0.00 0.00 34.99 4.08
5801 6416 4.906065 TGCTAAGCTGCATCCTAATTTG 57.094 40.909 1.02 0.00 38.12 2.32
5844 6461 5.399301 CGGAGCACAAACATTAAGAAAACAG 59.601 40.000 0.00 0.00 0.00 3.16
5857 6474 1.070786 TCCAGTCCGGAGCACAAAC 59.929 57.895 3.06 0.00 39.64 2.93
5867 6484 2.035961 TCAACAAAGAGTCTCCAGTCCG 59.964 50.000 0.00 0.00 0.00 4.79
5937 6554 6.531439 ACGCGATAAGAATTTCTTTGTACAC 58.469 36.000 15.93 2.69 37.89 2.90
5946 6563 6.353582 CCGATGTTTAACGCGATAAGAATTTC 59.646 38.462 15.93 5.03 0.00 2.17
5995 6613 3.648067 TGGAGATGCCCTAATGGAAGTAG 59.352 47.826 0.00 0.00 35.39 2.57
6015 6633 4.529109 AAATTTACGGGGTTGACATTGG 57.471 40.909 0.00 0.00 0.00 3.16
6025 6643 0.173935 GCGGGGAAAAATTTACGGGG 59.826 55.000 0.00 0.00 0.00 5.73
6047 6665 4.193893 TCCCCTATCCGCGGACGA 62.194 66.667 33.75 20.89 43.93 4.20
6049 6667 3.613689 GGTCCCCTATCCGCGGAC 61.614 72.222 33.75 16.71 44.50 4.79
6051 6669 3.616721 CTGGTCCCCTATCCGCGG 61.617 72.222 22.12 22.12 0.00 6.46
6052 6670 2.838225 ACTGGTCCCCTATCCGCG 60.838 66.667 0.00 0.00 0.00 6.46
6053 6671 2.508751 GGACTGGTCCCCTATCCGC 61.509 68.421 8.48 0.00 43.94 5.54
6054 6672 2.201022 CGGACTGGTCCCCTATCCG 61.201 68.421 13.41 10.11 46.96 4.18
6055 6673 2.508751 GCGGACTGGTCCCCTATCC 61.509 68.421 13.41 0.00 46.96 2.59
6056 6674 2.857744 CGCGGACTGGTCCCCTATC 61.858 68.421 13.41 0.00 46.96 2.08
6057 6675 2.838225 CGCGGACTGGTCCCCTAT 60.838 66.667 13.41 0.00 46.96 2.57
6062 6680 4.736896 GTGTCCGCGGACTGGTCC 62.737 72.222 46.72 29.41 44.80 4.46
6095 6713 0.322906 TGCGGGCAATGTTGGTATGA 60.323 50.000 0.00 0.00 0.00 2.15
6099 6717 0.610509 TGTATGCGGGCAATGTTGGT 60.611 50.000 0.00 0.00 0.00 3.67
6143 6761 4.508861 GCTGTGTTTGCATGAATTTTGTCT 59.491 37.500 0.00 0.00 0.00 3.41
6146 6764 3.363182 CCGCTGTGTTTGCATGAATTTTG 60.363 43.478 0.00 0.00 0.00 2.44
6165 6783 3.120786 CGTCCGGTTTATATGAAATCCGC 60.121 47.826 0.00 0.00 39.37 5.54
6181 6799 6.318628 TCAAAATGTAATGAATTTCGTCCGG 58.681 36.000 0.00 0.00 0.00 5.14
6231 6849 0.933097 CGACTGGACATGCACATAGC 59.067 55.000 0.00 0.00 45.96 2.97
6241 6859 4.357947 GCTCCGCACGACTGGACA 62.358 66.667 0.00 0.00 0.00 4.02
6246 6864 2.564553 GAATGGAGCTCCGCACGACT 62.565 60.000 27.43 0.00 39.43 4.18
6251 6869 1.219124 GTGAGAATGGAGCTCCGCA 59.781 57.895 27.43 16.44 39.43 5.69
6266 6884 3.192633 AGTGCAGTGTATATGTGTCGTGA 59.807 43.478 0.00 0.00 0.00 4.35
6276 6894 3.562973 GCCGTAGACTAGTGCAGTGTATA 59.437 47.826 0.00 0.00 37.72 1.47
6305 6923 0.902531 GGAAGACAAGGGATCCGTCA 59.097 55.000 17.39 0.00 31.92 4.35
6307 6925 1.272554 GGGGAAGACAAGGGATCCGT 61.273 60.000 5.45 2.61 32.56 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.