Multiple sequence alignment - TraesCS4B01G312800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G312800 chr4B 100.000 3110 0 0 1 3110 602673599 602670490 0.000000e+00 5744.0
1 TraesCS4B01G312800 chr4A 93.080 2847 155 7 276 3110 448257815 448254999 0.000000e+00 4128.0
2 TraesCS4B01G312800 chr1D 89.283 2846 237 19 278 3110 153032345 153029555 0.000000e+00 3504.0
3 TraesCS4B01G312800 chr5D 93.860 1596 87 3 1526 3110 124393478 124395073 0.000000e+00 2394.0
4 TraesCS4B01G312800 chrUn 88.800 1125 104 8 276 1398 284685473 284684369 0.000000e+00 1360.0
5 TraesCS4B01G312800 chrUn 92.982 114 6 1 178 289 323135999 323135886 6.900000e-37 165.0
6 TraesCS4B01G312800 chr3D 93.848 894 53 2 1538 2430 28476795 28475903 0.000000e+00 1345.0
7 TraesCS4B01G312800 chr3D 93.939 693 32 3 2428 3110 28464965 28464273 0.000000e+00 1038.0
8 TraesCS4B01G312800 chr3D 92.982 114 6 1 178 289 274420829 274420942 6.900000e-37 165.0
9 TraesCS4B01G312800 chr3D 92.982 114 6 1 178 289 274424084 274424197 6.900000e-37 165.0
10 TraesCS4B01G312800 chr3D 92.982 114 6 1 178 289 274632863 274632976 6.900000e-37 165.0
11 TraesCS4B01G312800 chr3D 92.982 114 6 1 178 289 274636118 274636231 6.900000e-37 165.0
12 TraesCS4B01G312800 chr3D 89.344 122 9 3 178 297 294054736 294054855 1.930000e-32 150.0
13 TraesCS4B01G312800 chr3D 79.310 116 23 1 1205 1320 199111944 199112058 2.570000e-11 80.5
14 TraesCS4B01G312800 chr5B 94.215 121 4 2 172 289 506089643 506089763 6.850000e-42 182.0
15 TraesCS4B01G312800 chr1B 92.500 120 6 2 172 288 280692265 280692384 5.330000e-38 169.0
16 TraesCS4B01G312800 chr1B 93.162 117 5 2 176 290 280695565 280695680 5.330000e-38 169.0
17 TraesCS4B01G312800 chr3B 82.105 95 16 1 1226 1320 328713379 328713286 2.570000e-11 80.5
18 TraesCS4B01G312800 chr3A 79.310 116 23 1 1205 1320 310697227 310697341 2.570000e-11 80.5
19 TraesCS4B01G312800 chr2D 100.000 31 0 0 2762 2792 607951808 607951838 1.200000e-04 58.4
20 TraesCS4B01G312800 chr2D 80.556 72 14 0 2764 2835 66849275 66849204 4.330000e-04 56.5
21 TraesCS4B01G312800 chr5A 92.500 40 1 2 498 535 9713322 9713283 4.330000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G312800 chr4B 602670490 602673599 3109 True 5744 5744 100.000 1 3110 1 chr4B.!!$R1 3109
1 TraesCS4B01G312800 chr4A 448254999 448257815 2816 True 4128 4128 93.080 276 3110 1 chr4A.!!$R1 2834
2 TraesCS4B01G312800 chr1D 153029555 153032345 2790 True 3504 3504 89.283 278 3110 1 chr1D.!!$R1 2832
3 TraesCS4B01G312800 chr5D 124393478 124395073 1595 False 2394 2394 93.860 1526 3110 1 chr5D.!!$F1 1584
4 TraesCS4B01G312800 chrUn 284684369 284685473 1104 True 1360 1360 88.800 276 1398 1 chrUn.!!$R1 1122
5 TraesCS4B01G312800 chr3D 28475903 28476795 892 True 1345 1345 93.848 1538 2430 1 chr3D.!!$R2 892
6 TraesCS4B01G312800 chr3D 28464273 28464965 692 True 1038 1038 93.939 2428 3110 1 chr3D.!!$R1 682

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
705 708 0.035056 CCAGCGACTTGGAGGGATTT 60.035 55.0 0.0 0.0 40.87 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2378 2382 0.179004 TGACCCCAGTTCGCAACATT 60.179 50.0 2.61 0.0 0.0 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.788690 TCGATGCTCGATCTCTATTTGAC 58.211 43.478 4.47 0.00 44.82 3.18
24 25 4.275936 TCGATGCTCGATCTCTATTTGACA 59.724 41.667 4.47 0.00 44.82 3.58
25 26 4.616381 CGATGCTCGATCTCTATTTGACAG 59.384 45.833 0.00 0.00 43.74 3.51
26 27 5.561725 CGATGCTCGATCTCTATTTGACAGA 60.562 44.000 0.00 0.00 43.74 3.41
27 28 5.582689 TGCTCGATCTCTATTTGACAGAA 57.417 39.130 0.00 0.00 0.00 3.02
28 29 6.154203 TGCTCGATCTCTATTTGACAGAAT 57.846 37.500 0.00 0.00 0.00 2.40
29 30 5.981915 TGCTCGATCTCTATTTGACAGAATG 59.018 40.000 0.00 0.00 46.00 2.67
47 48 7.413475 CAGAATGTCTAAACCGATGGATAAG 57.587 40.000 0.00 0.00 0.00 1.73
48 49 7.210174 CAGAATGTCTAAACCGATGGATAAGA 58.790 38.462 0.00 0.00 0.00 2.10
49 50 7.710907 CAGAATGTCTAAACCGATGGATAAGAA 59.289 37.037 0.00 0.00 0.00 2.52
50 51 7.928706 AGAATGTCTAAACCGATGGATAAGAAG 59.071 37.037 0.00 0.00 0.00 2.85
51 52 5.914033 TGTCTAAACCGATGGATAAGAAGG 58.086 41.667 0.00 0.00 0.00 3.46
52 53 5.659525 TGTCTAAACCGATGGATAAGAAGGA 59.340 40.000 0.00 0.00 0.00 3.36
53 54 6.183360 TGTCTAAACCGATGGATAAGAAGGAG 60.183 42.308 0.00 0.00 0.00 3.69
54 55 4.423625 AAACCGATGGATAAGAAGGAGG 57.576 45.455 0.00 0.00 0.00 4.30
55 56 3.047695 ACCGATGGATAAGAAGGAGGT 57.952 47.619 0.00 0.00 0.00 3.85
56 57 4.194678 ACCGATGGATAAGAAGGAGGTA 57.805 45.455 0.00 0.00 0.00 3.08
57 58 3.896272 ACCGATGGATAAGAAGGAGGTAC 59.104 47.826 0.00 0.00 0.00 3.34
59 60 4.021894 CCGATGGATAAGAAGGAGGTACTG 60.022 50.000 0.00 0.00 41.55 2.74
60 61 4.827835 CGATGGATAAGAAGGAGGTACTGA 59.172 45.833 0.00 0.00 41.55 3.41
61 62 5.478679 CGATGGATAAGAAGGAGGTACTGAT 59.521 44.000 0.00 0.00 41.55 2.90
62 63 6.571344 CGATGGATAAGAAGGAGGTACTGATG 60.571 46.154 0.00 0.00 41.55 3.07
63 64 5.777449 TGGATAAGAAGGAGGTACTGATGA 58.223 41.667 0.00 0.00 41.55 2.92
64 65 6.202331 TGGATAAGAAGGAGGTACTGATGAA 58.798 40.000 0.00 0.00 41.55 2.57
65 66 6.098409 TGGATAAGAAGGAGGTACTGATGAAC 59.902 42.308 0.00 0.00 41.55 3.18
66 67 6.098409 GGATAAGAAGGAGGTACTGATGAACA 59.902 42.308 0.00 0.00 41.55 3.18
67 68 7.202047 GGATAAGAAGGAGGTACTGATGAACAT 60.202 40.741 0.00 0.00 41.55 2.71
68 69 5.350504 AGAAGGAGGTACTGATGAACATG 57.649 43.478 0.00 0.00 41.55 3.21
69 70 5.026121 AGAAGGAGGTACTGATGAACATGA 58.974 41.667 0.00 0.00 41.55 3.07
70 71 5.664908 AGAAGGAGGTACTGATGAACATGAT 59.335 40.000 0.00 0.00 41.55 2.45
71 72 5.543507 AGGAGGTACTGATGAACATGATC 57.456 43.478 0.00 0.00 41.55 2.92
72 73 4.346418 AGGAGGTACTGATGAACATGATCC 59.654 45.833 0.00 0.00 41.55 3.36
73 74 4.101585 GGAGGTACTGATGAACATGATCCA 59.898 45.833 0.00 0.00 41.55 3.41
74 75 5.028549 AGGTACTGATGAACATGATCCAC 57.971 43.478 0.00 0.00 37.18 4.02
75 76 4.471025 AGGTACTGATGAACATGATCCACA 59.529 41.667 0.00 0.00 37.18 4.17
76 77 5.045651 AGGTACTGATGAACATGATCCACAA 60.046 40.000 0.00 0.00 37.18 3.33
77 78 5.065218 GGTACTGATGAACATGATCCACAAC 59.935 44.000 0.00 0.00 0.00 3.32
78 79 4.654915 ACTGATGAACATGATCCACAACA 58.345 39.130 0.00 0.00 0.00 3.33
79 80 4.698780 ACTGATGAACATGATCCACAACAG 59.301 41.667 0.00 8.48 37.38 3.16
80 81 4.654915 TGATGAACATGATCCACAACAGT 58.345 39.130 0.00 0.00 0.00 3.55
81 82 4.456566 TGATGAACATGATCCACAACAGTG 59.543 41.667 0.00 0.00 0.00 3.66
88 89 3.215568 CCACAACAGTGGCGGCAA 61.216 61.111 15.50 0.00 45.68 4.52
89 90 2.026014 CACAACAGTGGCGGCAAC 59.974 61.111 15.50 8.43 0.00 4.17
101 102 4.278956 GGCAACGAAGATGGACGT 57.721 55.556 0.00 0.00 44.57 4.34
102 103 1.787847 GGCAACGAAGATGGACGTG 59.212 57.895 0.00 0.00 42.43 4.49
103 104 1.635663 GGCAACGAAGATGGACGTGG 61.636 60.000 0.00 0.00 42.43 4.94
104 105 0.669318 GCAACGAAGATGGACGTGGA 60.669 55.000 0.00 0.00 42.43 4.02
105 106 1.350193 CAACGAAGATGGACGTGGAG 58.650 55.000 0.00 0.00 42.43 3.86
106 107 0.246635 AACGAAGATGGACGTGGAGG 59.753 55.000 0.00 0.00 42.43 4.30
107 108 0.611062 ACGAAGATGGACGTGGAGGA 60.611 55.000 0.00 0.00 41.17 3.71
108 109 0.179134 CGAAGATGGACGTGGAGGAC 60.179 60.000 0.00 0.00 0.00 3.85
109 110 1.187087 GAAGATGGACGTGGAGGACT 58.813 55.000 0.00 0.00 0.00 3.85
110 111 1.135333 GAAGATGGACGTGGAGGACTC 59.865 57.143 0.00 0.00 0.00 3.36
119 120 4.315588 GGAGGACTCCGAGTCGAA 57.684 61.111 19.95 0.00 45.96 3.71
120 121 2.099994 GGAGGACTCCGAGTCGAAG 58.900 63.158 19.95 5.41 45.96 3.79
121 122 1.378124 GGAGGACTCCGAGTCGAAGG 61.378 65.000 19.95 5.98 45.96 3.46
122 123 1.995646 GAGGACTCCGAGTCGAAGGC 61.996 65.000 19.95 4.58 45.96 4.35
123 124 2.341101 GGACTCCGAGTCGAAGGCA 61.341 63.158 19.95 0.00 45.96 4.75
124 125 1.137825 GACTCCGAGTCGAAGGCAG 59.862 63.158 15.64 4.15 35.28 4.85
125 126 1.303398 ACTCCGAGTCGAAGGCAGA 60.303 57.895 15.64 0.00 0.00 4.26
126 127 1.309499 ACTCCGAGTCGAAGGCAGAG 61.309 60.000 15.64 12.94 33.34 3.35
127 128 1.002502 TCCGAGTCGAAGGCAGAGA 60.003 57.895 15.64 0.00 0.00 3.10
128 129 1.137825 CCGAGTCGAAGGCAGAGAC 59.862 63.158 15.64 0.00 35.30 3.36
129 130 1.137825 CGAGTCGAAGGCAGAGACC 59.862 63.158 6.73 0.00 35.65 3.85
130 131 1.513622 GAGTCGAAGGCAGAGACCC 59.486 63.158 0.00 0.00 35.65 4.46
131 132 1.228894 AGTCGAAGGCAGAGACCCA 60.229 57.895 0.00 0.00 35.65 4.51
132 133 0.832135 AGTCGAAGGCAGAGACCCAA 60.832 55.000 0.00 0.00 35.65 4.12
133 134 0.670854 GTCGAAGGCAGAGACCCAAC 60.671 60.000 0.00 0.00 0.00 3.77
134 135 1.118965 TCGAAGGCAGAGACCCAACA 61.119 55.000 0.00 0.00 0.00 3.33
135 136 0.671781 CGAAGGCAGAGACCCAACAG 60.672 60.000 0.00 0.00 0.00 3.16
136 137 0.687354 GAAGGCAGAGACCCAACAGA 59.313 55.000 0.00 0.00 0.00 3.41
137 138 0.398318 AAGGCAGAGACCCAACAGAC 59.602 55.000 0.00 0.00 0.00 3.51
138 139 1.374758 GGCAGAGACCCAACAGACG 60.375 63.158 0.00 0.00 0.00 4.18
139 140 1.374758 GCAGAGACCCAACAGACGG 60.375 63.158 0.00 0.00 0.00 4.79
140 141 1.816863 GCAGAGACCCAACAGACGGA 61.817 60.000 0.00 0.00 0.00 4.69
141 142 0.898320 CAGAGACCCAACAGACGGAT 59.102 55.000 0.00 0.00 0.00 4.18
142 143 0.898320 AGAGACCCAACAGACGGATG 59.102 55.000 0.00 0.00 0.00 3.51
143 144 0.741221 GAGACCCAACAGACGGATGC 60.741 60.000 0.00 0.00 0.00 3.91
144 145 1.745489 GACCCAACAGACGGATGCC 60.745 63.158 0.00 0.00 0.00 4.40
145 146 2.185310 GACCCAACAGACGGATGCCT 62.185 60.000 0.00 0.00 0.00 4.75
146 147 0.907704 ACCCAACAGACGGATGCCTA 60.908 55.000 0.00 0.00 0.00 3.93
147 148 0.179073 CCCAACAGACGGATGCCTAG 60.179 60.000 0.00 0.00 0.00 3.02
148 149 0.824109 CCAACAGACGGATGCCTAGA 59.176 55.000 0.00 0.00 0.00 2.43
149 150 1.414181 CCAACAGACGGATGCCTAGAT 59.586 52.381 0.00 0.00 0.00 1.98
150 151 2.477825 CAACAGACGGATGCCTAGATG 58.522 52.381 0.00 0.00 0.00 2.90
151 152 2.073252 ACAGACGGATGCCTAGATGA 57.927 50.000 0.00 0.00 0.00 2.92
152 153 1.683917 ACAGACGGATGCCTAGATGAC 59.316 52.381 0.00 0.00 0.00 3.06
153 154 0.955178 AGACGGATGCCTAGATGACG 59.045 55.000 0.00 0.00 0.00 4.35
154 155 0.952280 GACGGATGCCTAGATGACGA 59.048 55.000 0.00 0.00 0.00 4.20
155 156 1.542030 GACGGATGCCTAGATGACGAT 59.458 52.381 0.00 0.00 0.00 3.73
156 157 1.270826 ACGGATGCCTAGATGACGATG 59.729 52.381 0.00 0.00 0.00 3.84
157 158 1.270826 CGGATGCCTAGATGACGATGT 59.729 52.381 0.00 0.00 0.00 3.06
158 159 2.288457 CGGATGCCTAGATGACGATGTT 60.288 50.000 0.00 0.00 0.00 2.71
159 160 3.057526 CGGATGCCTAGATGACGATGTTA 60.058 47.826 0.00 0.00 0.00 2.41
160 161 4.489810 GGATGCCTAGATGACGATGTTAG 58.510 47.826 0.00 0.00 0.00 2.34
161 162 3.371102 TGCCTAGATGACGATGTTAGC 57.629 47.619 0.00 0.00 0.00 3.09
162 163 2.693074 TGCCTAGATGACGATGTTAGCA 59.307 45.455 0.00 0.00 0.00 3.49
163 164 3.243535 TGCCTAGATGACGATGTTAGCAG 60.244 47.826 0.00 0.00 0.00 4.24
164 165 3.312828 CCTAGATGACGATGTTAGCAGC 58.687 50.000 0.00 0.00 0.00 5.25
165 166 2.967599 AGATGACGATGTTAGCAGCA 57.032 45.000 0.00 0.00 0.00 4.41
166 167 2.544685 AGATGACGATGTTAGCAGCAC 58.455 47.619 0.00 0.00 0.00 4.40
167 168 2.167281 AGATGACGATGTTAGCAGCACT 59.833 45.455 0.00 0.00 0.00 4.40
168 169 1.996292 TGACGATGTTAGCAGCACTC 58.004 50.000 0.00 0.00 0.00 3.51
169 170 1.546029 TGACGATGTTAGCAGCACTCT 59.454 47.619 0.00 0.00 0.00 3.24
170 171 2.029020 TGACGATGTTAGCAGCACTCTT 60.029 45.455 0.00 0.00 0.00 2.85
171 172 2.600867 GACGATGTTAGCAGCACTCTTC 59.399 50.000 0.00 0.00 0.00 2.87
172 173 2.232452 ACGATGTTAGCAGCACTCTTCT 59.768 45.455 0.00 0.00 0.00 2.85
173 174 2.857152 CGATGTTAGCAGCACTCTTCTC 59.143 50.000 0.00 0.00 0.00 2.87
174 175 3.674410 CGATGTTAGCAGCACTCTTCTCA 60.674 47.826 0.00 0.00 0.00 3.27
175 176 3.032017 TGTTAGCAGCACTCTTCTCAC 57.968 47.619 0.00 0.00 0.00 3.51
176 177 2.365293 TGTTAGCAGCACTCTTCTCACA 59.635 45.455 0.00 0.00 0.00 3.58
177 178 3.181466 TGTTAGCAGCACTCTTCTCACAA 60.181 43.478 0.00 0.00 0.00 3.33
178 179 2.855209 AGCAGCACTCTTCTCACAAT 57.145 45.000 0.00 0.00 0.00 2.71
179 180 3.137446 AGCAGCACTCTTCTCACAATT 57.863 42.857 0.00 0.00 0.00 2.32
180 181 3.484407 AGCAGCACTCTTCTCACAATTT 58.516 40.909 0.00 0.00 0.00 1.82
181 182 3.252701 AGCAGCACTCTTCTCACAATTTG 59.747 43.478 0.00 0.00 0.00 2.32
182 183 3.251729 GCAGCACTCTTCTCACAATTTGA 59.748 43.478 2.79 0.00 0.00 2.69
183 184 4.082895 GCAGCACTCTTCTCACAATTTGAT 60.083 41.667 2.79 0.00 32.17 2.57
184 185 5.629097 CAGCACTCTTCTCACAATTTGATC 58.371 41.667 2.79 0.00 32.17 2.92
185 186 5.411977 CAGCACTCTTCTCACAATTTGATCT 59.588 40.000 2.79 0.00 32.17 2.75
186 187 6.592994 CAGCACTCTTCTCACAATTTGATCTA 59.407 38.462 2.79 0.00 32.17 1.98
187 188 6.593382 AGCACTCTTCTCACAATTTGATCTAC 59.407 38.462 2.79 0.00 32.17 2.59
188 189 6.369890 GCACTCTTCTCACAATTTGATCTACA 59.630 38.462 2.79 0.00 32.17 2.74
189 190 7.095060 GCACTCTTCTCACAATTTGATCTACAA 60.095 37.037 2.79 0.00 36.65 2.41
190 191 8.441608 CACTCTTCTCACAATTTGATCTACAAG 58.558 37.037 2.79 0.00 39.77 3.16
191 192 7.118971 ACTCTTCTCACAATTTGATCTACAAGC 59.881 37.037 2.79 0.00 39.77 4.01
192 193 6.372659 TCTTCTCACAATTTGATCTACAAGCC 59.627 38.462 2.79 0.00 39.77 4.35
193 194 5.559770 TCTCACAATTTGATCTACAAGCCA 58.440 37.500 2.79 0.00 39.77 4.75
194 195 6.182627 TCTCACAATTTGATCTACAAGCCAT 58.817 36.000 2.79 0.00 39.77 4.40
195 196 6.094464 TCTCACAATTTGATCTACAAGCCATG 59.906 38.462 2.79 0.00 39.77 3.66
196 197 5.125900 TCACAATTTGATCTACAAGCCATGG 59.874 40.000 7.63 7.63 39.77 3.66
197 198 5.125900 CACAATTTGATCTACAAGCCATGGA 59.874 40.000 18.40 0.00 39.77 3.41
198 199 5.895534 ACAATTTGATCTACAAGCCATGGAT 59.104 36.000 18.40 6.18 39.77 3.41
199 200 6.381994 ACAATTTGATCTACAAGCCATGGATT 59.618 34.615 18.40 14.20 39.77 3.01
200 201 6.645790 ATTTGATCTACAAGCCATGGATTC 57.354 37.500 18.40 2.56 39.77 2.52
201 202 4.776435 TGATCTACAAGCCATGGATTCA 57.224 40.909 18.40 5.72 0.00 2.57
202 203 4.454678 TGATCTACAAGCCATGGATTCAC 58.545 43.478 18.40 0.00 0.00 3.18
203 204 3.281727 TCTACAAGCCATGGATTCACC 57.718 47.619 18.40 0.00 39.54 4.02
204 205 8.501316 TTGATCTACAAGCCATGGATTCACCA 62.501 42.308 18.40 4.40 42.14 4.17
205 206 9.868867 TTGATCTACAAGCCATGGATTCACCAA 62.869 40.741 18.40 10.17 41.69 3.67
214 215 3.845781 TGGATTCACCAAGATCTAGCC 57.154 47.619 0.00 0.00 46.75 3.93
215 216 3.114606 TGGATTCACCAAGATCTAGCCA 58.885 45.455 0.00 0.00 46.75 4.75
216 217 3.718434 TGGATTCACCAAGATCTAGCCAT 59.282 43.478 0.00 0.00 46.75 4.40
217 218 4.166725 TGGATTCACCAAGATCTAGCCATT 59.833 41.667 0.00 0.00 46.75 3.16
218 219 5.369404 TGGATTCACCAAGATCTAGCCATTA 59.631 40.000 0.00 0.00 46.75 1.90
219 220 5.703130 GGATTCACCAAGATCTAGCCATTAC 59.297 44.000 0.00 0.00 38.79 1.89
220 221 5.692115 TTCACCAAGATCTAGCCATTACA 57.308 39.130 0.00 0.00 0.00 2.41
221 222 5.282055 TCACCAAGATCTAGCCATTACAG 57.718 43.478 0.00 0.00 0.00 2.74
222 223 4.962362 TCACCAAGATCTAGCCATTACAGA 59.038 41.667 0.00 0.00 0.00 3.41
223 224 5.069648 TCACCAAGATCTAGCCATTACAGAG 59.930 44.000 0.00 0.00 0.00 3.35
224 225 4.346418 ACCAAGATCTAGCCATTACAGAGG 59.654 45.833 0.00 0.00 0.00 3.69
225 226 4.590647 CCAAGATCTAGCCATTACAGAGGA 59.409 45.833 0.00 0.00 0.00 3.71
226 227 5.279406 CCAAGATCTAGCCATTACAGAGGAG 60.279 48.000 0.00 0.00 0.00 3.69
227 228 4.415596 AGATCTAGCCATTACAGAGGAGG 58.584 47.826 0.00 0.00 0.00 4.30
228 229 3.973472 TCTAGCCATTACAGAGGAGGA 57.027 47.619 0.00 0.00 0.00 3.71
229 230 3.838565 TCTAGCCATTACAGAGGAGGAG 58.161 50.000 0.00 0.00 0.00 3.69
230 231 2.856760 AGCCATTACAGAGGAGGAGA 57.143 50.000 0.00 0.00 0.00 3.71
231 232 2.676748 AGCCATTACAGAGGAGGAGAG 58.323 52.381 0.00 0.00 0.00 3.20
232 233 1.691434 GCCATTACAGAGGAGGAGAGG 59.309 57.143 0.00 0.00 0.00 3.69
233 234 2.691241 GCCATTACAGAGGAGGAGAGGA 60.691 54.545 0.00 0.00 0.00 3.71
234 235 3.647636 CCATTACAGAGGAGGAGAGGAA 58.352 50.000 0.00 0.00 0.00 3.36
235 236 3.386402 CCATTACAGAGGAGGAGAGGAAC 59.614 52.174 0.00 0.00 0.00 3.62
236 237 3.827817 TTACAGAGGAGGAGAGGAACA 57.172 47.619 0.00 0.00 0.00 3.18
237 238 1.931635 ACAGAGGAGGAGAGGAACAC 58.068 55.000 0.00 0.00 0.00 3.32
238 239 0.814457 CAGAGGAGGAGAGGAACACG 59.186 60.000 0.00 0.00 0.00 4.49
239 240 0.699399 AGAGGAGGAGAGGAACACGA 59.301 55.000 0.00 0.00 0.00 4.35
240 241 1.099689 GAGGAGGAGAGGAACACGAG 58.900 60.000 0.00 0.00 0.00 4.18
241 242 0.699399 AGGAGGAGAGGAACACGAGA 59.301 55.000 0.00 0.00 0.00 4.04
242 243 1.099689 GGAGGAGAGGAACACGAGAG 58.900 60.000 0.00 0.00 0.00 3.20
243 244 1.099689 GAGGAGAGGAACACGAGAGG 58.900 60.000 0.00 0.00 0.00 3.69
244 245 0.699399 AGGAGAGGAACACGAGAGGA 59.301 55.000 0.00 0.00 0.00 3.71
245 246 1.075698 AGGAGAGGAACACGAGAGGAA 59.924 52.381 0.00 0.00 0.00 3.36
246 247 1.474879 GGAGAGGAACACGAGAGGAAG 59.525 57.143 0.00 0.00 0.00 3.46
247 248 2.438411 GAGAGGAACACGAGAGGAAGA 58.562 52.381 0.00 0.00 0.00 2.87
248 249 2.820787 GAGAGGAACACGAGAGGAAGAA 59.179 50.000 0.00 0.00 0.00 2.52
249 250 2.823154 AGAGGAACACGAGAGGAAGAAG 59.177 50.000 0.00 0.00 0.00 2.85
250 251 2.820787 GAGGAACACGAGAGGAAGAAGA 59.179 50.000 0.00 0.00 0.00 2.87
251 252 3.436243 AGGAACACGAGAGGAAGAAGAT 58.564 45.455 0.00 0.00 0.00 2.40
252 253 4.601084 AGGAACACGAGAGGAAGAAGATA 58.399 43.478 0.00 0.00 0.00 1.98
253 254 4.399934 AGGAACACGAGAGGAAGAAGATAC 59.600 45.833 0.00 0.00 0.00 2.24
254 255 4.158025 GGAACACGAGAGGAAGAAGATACA 59.842 45.833 0.00 0.00 0.00 2.29
255 256 4.974368 ACACGAGAGGAAGAAGATACAG 57.026 45.455 0.00 0.00 0.00 2.74
256 257 4.590918 ACACGAGAGGAAGAAGATACAGA 58.409 43.478 0.00 0.00 0.00 3.41
257 258 5.010933 ACACGAGAGGAAGAAGATACAGAA 58.989 41.667 0.00 0.00 0.00 3.02
258 259 5.124776 ACACGAGAGGAAGAAGATACAGAAG 59.875 44.000 0.00 0.00 0.00 2.85
259 260 4.097286 ACGAGAGGAAGAAGATACAGAAGC 59.903 45.833 0.00 0.00 0.00 3.86
260 261 4.097135 CGAGAGGAAGAAGATACAGAAGCA 59.903 45.833 0.00 0.00 0.00 3.91
261 262 5.591099 GAGAGGAAGAAGATACAGAAGCAG 58.409 45.833 0.00 0.00 0.00 4.24
262 263 5.268387 AGAGGAAGAAGATACAGAAGCAGA 58.732 41.667 0.00 0.00 0.00 4.26
263 264 5.719085 AGAGGAAGAAGATACAGAAGCAGAA 59.281 40.000 0.00 0.00 0.00 3.02
264 265 5.976458 AGGAAGAAGATACAGAAGCAGAAG 58.024 41.667 0.00 0.00 0.00 2.85
265 266 5.104982 AGGAAGAAGATACAGAAGCAGAAGG 60.105 44.000 0.00 0.00 0.00 3.46
266 267 4.135747 AGAAGATACAGAAGCAGAAGGC 57.864 45.455 0.00 0.00 45.30 4.35
288 289 0.107165 AAGCCGTCCAATTCCTAGCC 60.107 55.000 0.00 0.00 0.00 3.93
341 343 2.425592 CCACCCACTTCACGCTGA 59.574 61.111 0.00 0.00 0.00 4.26
346 348 1.003580 ACCCACTTCACGCTGAATCAT 59.996 47.619 1.76 0.00 35.59 2.45
413 415 1.600638 CTCATGGAGCACCTGAGCA 59.399 57.895 13.57 0.00 35.97 4.26
457 459 0.679640 CCATAACCCAGGCAAGCGAA 60.680 55.000 0.00 0.00 0.00 4.70
500 502 3.815396 AGCTCGACGCGCTCATCA 61.815 61.111 6.50 0.00 45.59 3.07
615 618 3.133691 CAATGATATGCAGGCGTACACT 58.866 45.455 0.00 0.00 0.00 3.55
623 626 3.688159 GGCGTACACTGACGGGGT 61.688 66.667 0.00 0.00 43.13 4.95
624 627 2.342650 GGCGTACACTGACGGGGTA 61.343 63.158 0.00 0.00 43.13 3.69
705 708 0.035056 CCAGCGACTTGGAGGGATTT 60.035 55.000 0.00 0.00 40.87 2.17
712 715 1.089920 CTTGGAGGGATTTGAGCGTG 58.910 55.000 0.00 0.00 0.00 5.34
713 716 0.960364 TTGGAGGGATTTGAGCGTGC 60.960 55.000 0.00 0.00 0.00 5.34
714 717 2.464459 GGAGGGATTTGAGCGTGCG 61.464 63.158 0.00 0.00 0.00 5.34
715 718 3.100862 GAGGGATTTGAGCGTGCGC 62.101 63.158 8.67 8.67 42.33 6.09
716 719 4.179579 GGGATTTGAGCGTGCGCC 62.180 66.667 13.21 5.62 43.17 6.53
717 720 4.520846 GGATTTGAGCGTGCGCCG 62.521 66.667 13.21 9.69 43.17 6.46
718 721 3.487202 GATTTGAGCGTGCGCCGA 61.487 61.111 20.06 2.25 43.17 5.54
771 774 1.608025 GGATTCAAGGCGTCACTGTCA 60.608 52.381 0.00 0.00 0.00 3.58
816 819 0.036164 AAGCACTGTATGTTCCGCCA 59.964 50.000 0.00 0.00 0.00 5.69
820 823 1.078497 CTGTATGTTCCGCCAGCCA 60.078 57.895 0.00 0.00 0.00 4.75
897 900 1.587054 CGAGCGGAGGAACAGTTCT 59.413 57.895 13.13 0.00 0.00 3.01
945 948 3.840078 CCCCCTCTGTTGATTTTCCAAAT 59.160 43.478 0.00 0.00 0.00 2.32
955 958 7.285566 TGTTGATTTTCCAAATTTTGATGGGA 58.714 30.769 10.72 0.00 37.31 4.37
1077 1080 3.889227 GCAGCACGCTGGTTATCA 58.111 55.556 20.00 0.00 43.77 2.15
1080 1083 0.578683 CAGCACGCTGGTTATCATCG 59.421 55.000 11.29 0.00 40.17 3.84
1120 1123 1.933853 GATCGTCGTGGGAGGATTTTG 59.066 52.381 1.42 0.00 45.20 2.44
1148 1151 2.293122 CAGTTCTGAATCGTTTTGGCCA 59.707 45.455 0.00 0.00 0.00 5.36
1161 1164 0.749649 TTGGCCACAACCAACATCAC 59.250 50.000 3.88 0.00 44.80 3.06
1186 1189 2.666862 TGCGCAAACTGTACCGGG 60.667 61.111 8.16 0.00 0.00 5.73
1267 1270 0.457851 GACAGCGTATGAGCCTGAGT 59.542 55.000 0.00 0.00 38.01 3.41
1290 1293 4.132336 CTGATATGCTGCATTACACCACT 58.868 43.478 21.56 0.00 0.00 4.00
1376 1379 6.723298 TTTGGACACAACTTATTCCATTGT 57.277 33.333 0.00 0.00 37.97 2.71
1418 1421 0.108945 GGCCATGAAGCTGAAACTGC 60.109 55.000 0.00 0.00 0.00 4.40
1435 1438 6.382859 TGAAACTGCATCCAAGAGGTATACTA 59.617 38.462 2.25 0.00 35.89 1.82
1448 1451 8.692710 CAAGAGGTATACTACACCTATGTTTCA 58.307 37.037 2.25 0.00 46.60 2.69
1566 1569 1.941325 AAGCATACCGCAGAGCTAAC 58.059 50.000 0.00 0.00 46.13 2.34
1620 1623 0.168128 GCGACCATAAGTGCAACACC 59.832 55.000 0.00 0.00 41.43 4.16
1660 1663 4.100653 TGGTGCAAGAAATGTTGGAATTCA 59.899 37.500 7.93 0.00 28.58 2.57
1661 1664 5.221682 TGGTGCAAGAAATGTTGGAATTCAT 60.222 36.000 7.93 0.00 28.58 2.57
1683 1686 2.175284 TGCCTTGGATAGCATGGATTCA 59.825 45.455 0.00 0.00 33.08 2.57
1732 1735 2.090760 TGTCAGCTGAAGCACAACAAA 58.909 42.857 20.19 0.00 45.16 2.83
1752 1755 2.525105 TTCAAGGGGGAACTAATGCC 57.475 50.000 0.00 0.00 39.22 4.40
1788 1791 1.619827 CAATTGGGTGGTCATGCAGTT 59.380 47.619 0.00 0.00 0.00 3.16
1887 1890 2.825532 ACTGCCTTCACAACAAACTGTT 59.174 40.909 0.00 0.00 42.08 3.16
2018 2021 4.403432 ACATCATGATGGAATTGTGGGAAC 59.597 41.667 33.31 0.00 42.91 3.62
2093 2096 1.031571 GCCTTTGATCATCACGGCCA 61.032 55.000 13.93 0.00 37.28 5.36
2107 2110 3.800826 GGCCATCCGGTGTTCTTAT 57.199 52.632 0.00 0.00 33.28 1.73
2267 2270 1.133809 CCAACTGGACTTCCCCCTCA 61.134 60.000 0.00 0.00 37.39 3.86
2269 2272 0.104409 AACTGGACTTCCCCCTCAGT 60.104 55.000 0.00 0.00 39.97 3.41
2322 2326 2.290960 GGGGCTAGACCTGTGAACATTT 60.291 50.000 16.16 0.00 39.10 2.32
2324 2328 3.412386 GGCTAGACCTGTGAACATTTGT 58.588 45.455 0.00 0.00 34.51 2.83
2331 2335 5.487488 AGACCTGTGAACATTTGTCCCTATA 59.513 40.000 0.00 0.00 0.00 1.31
2361 2365 3.244770 ACCGGAGCCAAAGAGTGAAATTA 60.245 43.478 9.46 0.00 0.00 1.40
2386 2390 4.701956 AATAAGTCCAGGAAATGTTGCG 57.298 40.909 0.00 0.00 0.00 4.85
2439 2443 5.334879 CCGTTTGCCTCACCTATTATTATGC 60.335 44.000 0.00 0.00 0.00 3.14
2519 2523 3.392947 TGACACTCAAGTCCAAATACCCA 59.607 43.478 0.00 0.00 37.73 4.51
2541 2545 0.171455 ACCAGTGATCGACGAGCTTC 59.829 55.000 14.91 7.61 0.00 3.86
2564 2577 2.553028 GGATGAGCTCACCTGGTTTTCA 60.553 50.000 20.97 0.00 0.00 2.69
2635 2648 6.310711 GGTGAGGAGTATAAGACAACTTTTCG 59.689 42.308 0.00 0.00 37.53 3.46
2683 2696 2.134789 GTCCTGGCATTTGGACTGAT 57.865 50.000 15.15 0.00 46.65 2.90
2688 2701 2.827322 CTGGCATTTGGACTGATTGGAA 59.173 45.455 0.00 0.00 0.00 3.53
2765 2778 6.205853 GTGAACCAGATAAATGTGTTGTGGTA 59.794 38.462 0.00 0.00 35.76 3.25
2771 2784 8.522830 CCAGATAAATGTGTTGTGGTATTCTTT 58.477 33.333 0.00 0.00 0.00 2.52
2913 2926 2.760092 TGCAACATTTCTTATCTGGGCC 59.240 45.455 0.00 0.00 0.00 5.80
2932 2945 1.625315 CCATGTGGTGTCTGAGGAAGA 59.375 52.381 0.00 0.00 0.00 2.87
2972 2985 5.189736 TGCTAAGATTGAGGTGGTAGTCAAT 59.810 40.000 0.00 0.00 44.35 2.57
3036 3049 0.889306 GCTATCTGGCTACTACCGGG 59.111 60.000 6.32 0.00 36.66 5.73
3045 3058 2.289882 GGCTACTACCGGGAGTTTGTTT 60.290 50.000 27.97 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 5.767269 TCTGTCAAATAGAGATCGAGCATC 58.233 41.667 2.38 0.00 0.00 3.91
4 5 5.781210 TCTGTCAAATAGAGATCGAGCAT 57.219 39.130 2.38 0.00 0.00 3.79
5 6 5.582689 TTCTGTCAAATAGAGATCGAGCA 57.417 39.130 2.38 0.00 0.00 4.26
6 7 5.982516 ACATTCTGTCAAATAGAGATCGAGC 59.017 40.000 0.00 0.00 0.00 5.03
7 8 7.621832 GACATTCTGTCAAATAGAGATCGAG 57.378 40.000 2.48 0.00 46.22 4.04
22 23 4.819105 TCCATCGGTTTAGACATTCTGT 57.181 40.909 0.00 0.00 0.00 3.41
23 24 7.210174 TCTTATCCATCGGTTTAGACATTCTG 58.790 38.462 0.00 0.00 0.00 3.02
24 25 7.361457 TCTTATCCATCGGTTTAGACATTCT 57.639 36.000 0.00 0.00 0.00 2.40
25 26 7.171678 CCTTCTTATCCATCGGTTTAGACATTC 59.828 40.741 0.00 0.00 0.00 2.67
26 27 6.992715 CCTTCTTATCCATCGGTTTAGACATT 59.007 38.462 0.00 0.00 0.00 2.71
27 28 6.326583 TCCTTCTTATCCATCGGTTTAGACAT 59.673 38.462 0.00 0.00 0.00 3.06
28 29 5.659525 TCCTTCTTATCCATCGGTTTAGACA 59.340 40.000 0.00 0.00 0.00 3.41
29 30 6.158023 TCCTTCTTATCCATCGGTTTAGAC 57.842 41.667 0.00 0.00 0.00 2.59
30 31 5.304614 CCTCCTTCTTATCCATCGGTTTAGA 59.695 44.000 0.00 0.00 0.00 2.10
31 32 5.070580 ACCTCCTTCTTATCCATCGGTTTAG 59.929 44.000 0.00 0.00 0.00 1.85
32 33 4.966805 ACCTCCTTCTTATCCATCGGTTTA 59.033 41.667 0.00 0.00 0.00 2.01
33 34 3.780850 ACCTCCTTCTTATCCATCGGTTT 59.219 43.478 0.00 0.00 0.00 3.27
34 35 3.385115 ACCTCCTTCTTATCCATCGGTT 58.615 45.455 0.00 0.00 0.00 4.44
35 36 3.047695 ACCTCCTTCTTATCCATCGGT 57.952 47.619 0.00 0.00 0.00 4.69
36 37 4.021894 CAGTACCTCCTTCTTATCCATCGG 60.022 50.000 0.00 0.00 0.00 4.18
37 38 4.827835 TCAGTACCTCCTTCTTATCCATCG 59.172 45.833 0.00 0.00 0.00 3.84
38 39 6.495181 TCATCAGTACCTCCTTCTTATCCATC 59.505 42.308 0.00 0.00 0.00 3.51
39 40 6.385443 TCATCAGTACCTCCTTCTTATCCAT 58.615 40.000 0.00 0.00 0.00 3.41
40 41 5.777449 TCATCAGTACCTCCTTCTTATCCA 58.223 41.667 0.00 0.00 0.00 3.41
41 42 6.098409 TGTTCATCAGTACCTCCTTCTTATCC 59.902 42.308 0.00 0.00 0.00 2.59
42 43 7.113658 TGTTCATCAGTACCTCCTTCTTATC 57.886 40.000 0.00 0.00 0.00 1.75
43 44 7.345653 TCATGTTCATCAGTACCTCCTTCTTAT 59.654 37.037 0.00 0.00 0.00 1.73
44 45 6.667848 TCATGTTCATCAGTACCTCCTTCTTA 59.332 38.462 0.00 0.00 0.00 2.10
45 46 5.485353 TCATGTTCATCAGTACCTCCTTCTT 59.515 40.000 0.00 0.00 0.00 2.52
46 47 5.026121 TCATGTTCATCAGTACCTCCTTCT 58.974 41.667 0.00 0.00 0.00 2.85
47 48 5.344743 TCATGTTCATCAGTACCTCCTTC 57.655 43.478 0.00 0.00 0.00 3.46
48 49 5.163258 GGATCATGTTCATCAGTACCTCCTT 60.163 44.000 6.14 0.00 0.00 3.36
49 50 4.346418 GGATCATGTTCATCAGTACCTCCT 59.654 45.833 6.14 0.00 0.00 3.69
50 51 4.101585 TGGATCATGTTCATCAGTACCTCC 59.898 45.833 6.14 0.00 0.00 4.30
51 52 5.053145 GTGGATCATGTTCATCAGTACCTC 58.947 45.833 6.14 0.00 0.00 3.85
52 53 4.471025 TGTGGATCATGTTCATCAGTACCT 59.529 41.667 6.14 0.00 0.00 3.08
53 54 4.769688 TGTGGATCATGTTCATCAGTACC 58.230 43.478 6.14 0.00 0.00 3.34
54 55 5.643348 TGTTGTGGATCATGTTCATCAGTAC 59.357 40.000 6.14 0.00 0.00 2.73
55 56 5.803552 TGTTGTGGATCATGTTCATCAGTA 58.196 37.500 6.14 0.00 0.00 2.74
56 57 4.654915 TGTTGTGGATCATGTTCATCAGT 58.345 39.130 6.14 0.00 0.00 3.41
57 58 4.698780 ACTGTTGTGGATCATGTTCATCAG 59.301 41.667 6.14 9.26 34.24 2.90
58 59 4.456566 CACTGTTGTGGATCATGTTCATCA 59.543 41.667 6.14 1.98 40.33 3.07
59 60 4.978186 CACTGTTGTGGATCATGTTCATC 58.022 43.478 6.14 0.00 40.33 2.92
72 73 2.026014 GTTGCCGCCACTGTTGTG 59.974 61.111 0.00 0.00 43.45 3.33
73 74 3.582120 CGTTGCCGCCACTGTTGT 61.582 61.111 0.00 0.00 0.00 3.32
74 75 2.715864 CTTCGTTGCCGCCACTGTTG 62.716 60.000 0.00 0.00 0.00 3.33
75 76 2.515057 TTCGTTGCCGCCACTGTT 60.515 55.556 0.00 0.00 0.00 3.16
76 77 2.731691 ATCTTCGTTGCCGCCACTGT 62.732 55.000 0.00 0.00 0.00 3.55
77 78 2.034879 ATCTTCGTTGCCGCCACTG 61.035 57.895 0.00 0.00 0.00 3.66
78 79 2.034879 CATCTTCGTTGCCGCCACT 61.035 57.895 0.00 0.00 0.00 4.00
79 80 2.480555 CATCTTCGTTGCCGCCAC 59.519 61.111 0.00 0.00 0.00 5.01
80 81 2.745884 CCATCTTCGTTGCCGCCA 60.746 61.111 0.00 0.00 0.00 5.69
81 82 2.435938 TCCATCTTCGTTGCCGCC 60.436 61.111 0.00 0.00 0.00 6.13
82 83 2.785258 GTCCATCTTCGTTGCCGC 59.215 61.111 0.00 0.00 0.00 6.53
83 84 1.736645 ACGTCCATCTTCGTTGCCG 60.737 57.895 0.00 0.00 36.93 5.69
84 85 1.635663 CCACGTCCATCTTCGTTGCC 61.636 60.000 0.00 0.00 38.23 4.52
85 86 0.669318 TCCACGTCCATCTTCGTTGC 60.669 55.000 0.00 0.00 38.23 4.17
86 87 1.350193 CTCCACGTCCATCTTCGTTG 58.650 55.000 0.00 0.00 38.23 4.10
87 88 0.246635 CCTCCACGTCCATCTTCGTT 59.753 55.000 0.00 0.00 38.23 3.85
88 89 0.611062 TCCTCCACGTCCATCTTCGT 60.611 55.000 0.00 0.00 40.99 3.85
89 90 0.179134 GTCCTCCACGTCCATCTTCG 60.179 60.000 0.00 0.00 0.00 3.79
90 91 1.135333 GAGTCCTCCACGTCCATCTTC 59.865 57.143 0.00 0.00 0.00 2.87
91 92 1.187087 GAGTCCTCCACGTCCATCTT 58.813 55.000 0.00 0.00 0.00 2.40
92 93 2.889200 GAGTCCTCCACGTCCATCT 58.111 57.895 0.00 0.00 0.00 2.90
102 103 1.378124 CCTTCGACTCGGAGTCCTCC 61.378 65.000 27.55 8.31 42.12 4.30
103 104 1.995646 GCCTTCGACTCGGAGTCCTC 61.996 65.000 27.55 8.65 42.12 3.71
104 105 2.047443 GCCTTCGACTCGGAGTCCT 61.047 63.158 27.55 0.00 42.12 3.85
105 106 2.272918 CTGCCTTCGACTCGGAGTCC 62.273 65.000 27.55 16.00 42.12 3.85
106 107 1.137825 CTGCCTTCGACTCGGAGTC 59.862 63.158 24.85 24.85 41.71 3.36
107 108 1.303398 TCTGCCTTCGACTCGGAGT 60.303 57.895 11.09 11.09 29.14 3.85
108 109 1.027255 TCTCTGCCTTCGACTCGGAG 61.027 60.000 2.83 2.83 35.19 4.63
109 110 1.002502 TCTCTGCCTTCGACTCGGA 60.003 57.895 0.00 0.00 0.00 4.55
110 111 1.137825 GTCTCTGCCTTCGACTCGG 59.862 63.158 0.00 0.00 0.00 4.63
111 112 1.137825 GGTCTCTGCCTTCGACTCG 59.862 63.158 0.00 0.00 0.00 4.18
112 113 1.251527 TGGGTCTCTGCCTTCGACTC 61.252 60.000 0.00 0.00 0.00 3.36
113 114 0.832135 TTGGGTCTCTGCCTTCGACT 60.832 55.000 0.00 0.00 0.00 4.18
114 115 0.670854 GTTGGGTCTCTGCCTTCGAC 60.671 60.000 0.00 0.00 0.00 4.20
115 116 1.118965 TGTTGGGTCTCTGCCTTCGA 61.119 55.000 0.00 0.00 0.00 3.71
116 117 0.671781 CTGTTGGGTCTCTGCCTTCG 60.672 60.000 0.00 0.00 0.00 3.79
117 118 0.687354 TCTGTTGGGTCTCTGCCTTC 59.313 55.000 0.00 0.00 0.00 3.46
118 119 0.398318 GTCTGTTGGGTCTCTGCCTT 59.602 55.000 0.00 0.00 0.00 4.35
119 120 1.821061 CGTCTGTTGGGTCTCTGCCT 61.821 60.000 0.00 0.00 0.00 4.75
120 121 1.374758 CGTCTGTTGGGTCTCTGCC 60.375 63.158 0.00 0.00 0.00 4.85
121 122 1.374758 CCGTCTGTTGGGTCTCTGC 60.375 63.158 0.00 0.00 0.00 4.26
122 123 0.898320 ATCCGTCTGTTGGGTCTCTG 59.102 55.000 0.00 0.00 0.00 3.35
123 124 0.898320 CATCCGTCTGTTGGGTCTCT 59.102 55.000 0.00 0.00 0.00 3.10
124 125 0.741221 GCATCCGTCTGTTGGGTCTC 60.741 60.000 0.00 0.00 0.00 3.36
125 126 1.296715 GCATCCGTCTGTTGGGTCT 59.703 57.895 0.00 0.00 0.00 3.85
126 127 1.745489 GGCATCCGTCTGTTGGGTC 60.745 63.158 0.00 0.00 0.00 4.46
127 128 0.907704 TAGGCATCCGTCTGTTGGGT 60.908 55.000 0.00 0.00 0.00 4.51
128 129 0.179073 CTAGGCATCCGTCTGTTGGG 60.179 60.000 0.00 0.00 0.00 4.12
129 130 0.824109 TCTAGGCATCCGTCTGTTGG 59.176 55.000 0.00 0.00 0.00 3.77
130 131 2.101415 TCATCTAGGCATCCGTCTGTTG 59.899 50.000 0.00 0.00 0.00 3.33
131 132 2.101582 GTCATCTAGGCATCCGTCTGTT 59.898 50.000 0.00 0.00 0.00 3.16
132 133 1.683917 GTCATCTAGGCATCCGTCTGT 59.316 52.381 0.00 0.00 0.00 3.41
133 134 1.335415 CGTCATCTAGGCATCCGTCTG 60.335 57.143 0.00 0.00 0.00 3.51
134 135 0.955178 CGTCATCTAGGCATCCGTCT 59.045 55.000 0.00 0.00 0.00 4.18
135 136 0.952280 TCGTCATCTAGGCATCCGTC 59.048 55.000 0.00 0.00 0.00 4.79
136 137 1.270826 CATCGTCATCTAGGCATCCGT 59.729 52.381 0.00 0.00 0.00 4.69
137 138 1.270826 ACATCGTCATCTAGGCATCCG 59.729 52.381 0.00 0.00 0.00 4.18
138 139 3.393089 AACATCGTCATCTAGGCATCC 57.607 47.619 0.00 0.00 0.00 3.51
139 140 3.923461 GCTAACATCGTCATCTAGGCATC 59.077 47.826 0.00 0.00 0.00 3.91
140 141 3.321968 TGCTAACATCGTCATCTAGGCAT 59.678 43.478 0.00 0.00 0.00 4.40
141 142 2.693074 TGCTAACATCGTCATCTAGGCA 59.307 45.455 0.00 0.00 0.00 4.75
142 143 3.312828 CTGCTAACATCGTCATCTAGGC 58.687 50.000 0.00 0.00 0.00 3.93
143 144 3.243535 TGCTGCTAACATCGTCATCTAGG 60.244 47.826 0.00 0.00 0.00 3.02
144 145 3.733224 GTGCTGCTAACATCGTCATCTAG 59.267 47.826 0.00 0.00 0.00 2.43
145 146 3.381590 AGTGCTGCTAACATCGTCATCTA 59.618 43.478 0.00 0.00 0.00 1.98
146 147 2.167281 AGTGCTGCTAACATCGTCATCT 59.833 45.455 0.00 0.00 0.00 2.90
147 148 2.537625 GAGTGCTGCTAACATCGTCATC 59.462 50.000 0.00 0.00 0.00 2.92
148 149 2.167281 AGAGTGCTGCTAACATCGTCAT 59.833 45.455 0.00 0.00 0.00 3.06
149 150 1.546029 AGAGTGCTGCTAACATCGTCA 59.454 47.619 0.00 0.00 0.00 4.35
150 151 2.285827 AGAGTGCTGCTAACATCGTC 57.714 50.000 0.00 0.00 0.00 4.20
151 152 2.232452 AGAAGAGTGCTGCTAACATCGT 59.768 45.455 0.00 0.00 0.00 3.73
152 153 2.857152 GAGAAGAGTGCTGCTAACATCG 59.143 50.000 0.00 0.00 26.79 3.84
153 154 3.616379 GTGAGAAGAGTGCTGCTAACATC 59.384 47.826 0.00 0.00 31.93 3.06
154 155 3.007290 TGTGAGAAGAGTGCTGCTAACAT 59.993 43.478 0.00 0.00 36.38 2.71
155 156 2.365293 TGTGAGAAGAGTGCTGCTAACA 59.635 45.455 0.00 0.00 38.64 2.41
156 157 3.032017 TGTGAGAAGAGTGCTGCTAAC 57.968 47.619 0.00 0.00 32.23 2.34
157 158 3.751479 TTGTGAGAAGAGTGCTGCTAA 57.249 42.857 0.00 0.00 26.79 3.09
158 159 3.969287 ATTGTGAGAAGAGTGCTGCTA 57.031 42.857 0.00 0.00 26.79 3.49
159 160 2.855209 ATTGTGAGAAGAGTGCTGCT 57.145 45.000 0.00 0.00 30.49 4.24
160 161 3.251729 TCAAATTGTGAGAAGAGTGCTGC 59.748 43.478 0.00 0.00 0.00 5.25
161 162 5.411977 AGATCAAATTGTGAGAAGAGTGCTG 59.588 40.000 0.00 0.00 40.43 4.41
162 163 5.558818 AGATCAAATTGTGAGAAGAGTGCT 58.441 37.500 0.00 0.00 40.43 4.40
163 164 5.876612 AGATCAAATTGTGAGAAGAGTGC 57.123 39.130 0.00 0.00 40.43 4.40
164 165 7.895975 TGTAGATCAAATTGTGAGAAGAGTG 57.104 36.000 0.00 0.00 40.43 3.51
165 166 7.118971 GCTTGTAGATCAAATTGTGAGAAGAGT 59.881 37.037 0.00 0.00 40.43 3.24
166 167 7.413877 GGCTTGTAGATCAAATTGTGAGAAGAG 60.414 40.741 0.00 0.00 40.43 2.85
167 168 6.372659 GGCTTGTAGATCAAATTGTGAGAAGA 59.627 38.462 0.00 0.00 40.43 2.87
168 169 6.149973 TGGCTTGTAGATCAAATTGTGAGAAG 59.850 38.462 0.00 0.00 40.43 2.85
169 170 6.003326 TGGCTTGTAGATCAAATTGTGAGAA 58.997 36.000 0.00 0.00 40.43 2.87
170 171 5.559770 TGGCTTGTAGATCAAATTGTGAGA 58.440 37.500 0.00 0.00 40.43 3.27
171 172 5.885230 TGGCTTGTAGATCAAATTGTGAG 57.115 39.130 0.00 0.00 40.43 3.51
172 173 5.125900 CCATGGCTTGTAGATCAAATTGTGA 59.874 40.000 0.00 0.00 41.67 3.58
173 174 5.125900 TCCATGGCTTGTAGATCAAATTGTG 59.874 40.000 6.96 0.00 35.48 3.33
174 175 5.263599 TCCATGGCTTGTAGATCAAATTGT 58.736 37.500 6.96 0.00 35.48 2.71
175 176 5.840243 TCCATGGCTTGTAGATCAAATTG 57.160 39.130 6.96 0.00 35.48 2.32
176 177 6.608405 TGAATCCATGGCTTGTAGATCAAATT 59.392 34.615 6.96 0.00 35.48 1.82
177 178 6.040166 GTGAATCCATGGCTTGTAGATCAAAT 59.960 38.462 6.96 0.00 35.48 2.32
178 179 5.357878 GTGAATCCATGGCTTGTAGATCAAA 59.642 40.000 6.96 0.00 35.48 2.69
179 180 4.883585 GTGAATCCATGGCTTGTAGATCAA 59.116 41.667 6.96 0.00 34.61 2.57
180 181 4.454678 GTGAATCCATGGCTTGTAGATCA 58.545 43.478 6.96 0.00 0.00 2.92
181 182 3.817647 GGTGAATCCATGGCTTGTAGATC 59.182 47.826 6.96 0.00 35.97 2.75
182 183 3.202818 TGGTGAATCCATGGCTTGTAGAT 59.797 43.478 6.96 0.00 41.93 1.98
183 184 2.575735 TGGTGAATCCATGGCTTGTAGA 59.424 45.455 6.96 0.00 41.93 2.59
184 185 3.003394 TGGTGAATCCATGGCTTGTAG 57.997 47.619 6.96 0.00 41.93 2.74
185 186 3.010027 TCTTGGTGAATCCATGGCTTGTA 59.990 43.478 6.96 0.00 46.60 2.41
186 187 2.173519 CTTGGTGAATCCATGGCTTGT 58.826 47.619 6.96 0.00 46.60 3.16
187 188 2.449464 TCTTGGTGAATCCATGGCTTG 58.551 47.619 6.96 0.00 46.60 4.01
188 189 2.905415 TCTTGGTGAATCCATGGCTT 57.095 45.000 6.96 2.87 46.60 4.35
189 190 2.512896 AGATCTTGGTGAATCCATGGCT 59.487 45.455 6.96 0.00 46.60 4.75
190 191 2.941480 AGATCTTGGTGAATCCATGGC 58.059 47.619 6.96 0.00 46.60 4.40
191 192 4.070716 GCTAGATCTTGGTGAATCCATGG 58.929 47.826 4.97 4.97 46.60 3.66
192 193 4.070716 GGCTAGATCTTGGTGAATCCATG 58.929 47.826 0.00 0.00 46.60 3.66
193 194 3.718434 TGGCTAGATCTTGGTGAATCCAT 59.282 43.478 0.00 0.00 46.60 3.41
194 195 3.114606 TGGCTAGATCTTGGTGAATCCA 58.885 45.455 0.00 0.00 45.60 3.41
195 196 3.845781 TGGCTAGATCTTGGTGAATCC 57.154 47.619 0.00 0.00 0.00 3.01
196 197 6.291377 TGTAATGGCTAGATCTTGGTGAATC 58.709 40.000 0.00 0.00 0.00 2.52
197 198 6.100279 TCTGTAATGGCTAGATCTTGGTGAAT 59.900 38.462 0.00 0.00 0.00 2.57
198 199 5.425217 TCTGTAATGGCTAGATCTTGGTGAA 59.575 40.000 0.00 0.00 0.00 3.18
199 200 4.962362 TCTGTAATGGCTAGATCTTGGTGA 59.038 41.667 0.00 0.00 0.00 4.02
200 201 5.282055 TCTGTAATGGCTAGATCTTGGTG 57.718 43.478 0.00 0.00 0.00 4.17
201 202 4.346418 CCTCTGTAATGGCTAGATCTTGGT 59.654 45.833 0.00 0.00 0.00 3.67
202 203 4.590647 TCCTCTGTAATGGCTAGATCTTGG 59.409 45.833 0.00 0.00 0.00 3.61
203 204 5.279406 CCTCCTCTGTAATGGCTAGATCTTG 60.279 48.000 0.00 0.00 0.00 3.02
204 205 4.837860 CCTCCTCTGTAATGGCTAGATCTT 59.162 45.833 0.00 0.00 0.00 2.40
205 206 4.107149 TCCTCCTCTGTAATGGCTAGATCT 59.893 45.833 0.00 0.00 0.00 2.75
206 207 4.411927 TCCTCCTCTGTAATGGCTAGATC 58.588 47.826 0.00 0.00 0.00 2.75
207 208 4.107149 TCTCCTCCTCTGTAATGGCTAGAT 59.893 45.833 0.00 0.00 0.00 1.98
208 209 3.463704 TCTCCTCCTCTGTAATGGCTAGA 59.536 47.826 0.00 0.00 0.00 2.43
209 210 3.826157 CTCTCCTCCTCTGTAATGGCTAG 59.174 52.174 0.00 0.00 0.00 3.42
210 211 3.437198 CCTCTCCTCCTCTGTAATGGCTA 60.437 52.174 0.00 0.00 0.00 3.93
211 212 2.676748 CTCTCCTCCTCTGTAATGGCT 58.323 52.381 0.00 0.00 0.00 4.75
212 213 1.691434 CCTCTCCTCCTCTGTAATGGC 59.309 57.143 0.00 0.00 0.00 4.40
213 214 3.320610 TCCTCTCCTCCTCTGTAATGG 57.679 52.381 0.00 0.00 0.00 3.16
214 215 4.026744 TGTTCCTCTCCTCCTCTGTAATG 58.973 47.826 0.00 0.00 0.00 1.90
215 216 4.027437 GTGTTCCTCTCCTCCTCTGTAAT 58.973 47.826 0.00 0.00 0.00 1.89
216 217 3.432378 GTGTTCCTCTCCTCCTCTGTAA 58.568 50.000 0.00 0.00 0.00 2.41
217 218 2.618302 CGTGTTCCTCTCCTCCTCTGTA 60.618 54.545 0.00 0.00 0.00 2.74
218 219 1.888826 CGTGTTCCTCTCCTCCTCTGT 60.889 57.143 0.00 0.00 0.00 3.41
219 220 0.814457 CGTGTTCCTCTCCTCCTCTG 59.186 60.000 0.00 0.00 0.00 3.35
220 221 0.699399 TCGTGTTCCTCTCCTCCTCT 59.301 55.000 0.00 0.00 0.00 3.69
221 222 1.099689 CTCGTGTTCCTCTCCTCCTC 58.900 60.000 0.00 0.00 0.00 3.71
222 223 0.699399 TCTCGTGTTCCTCTCCTCCT 59.301 55.000 0.00 0.00 0.00 3.69
223 224 1.099689 CTCTCGTGTTCCTCTCCTCC 58.900 60.000 0.00 0.00 0.00 4.30
224 225 1.099689 CCTCTCGTGTTCCTCTCCTC 58.900 60.000 0.00 0.00 0.00 3.71
225 226 0.699399 TCCTCTCGTGTTCCTCTCCT 59.301 55.000 0.00 0.00 0.00 3.69
226 227 1.474879 CTTCCTCTCGTGTTCCTCTCC 59.525 57.143 0.00 0.00 0.00 3.71
227 228 2.438411 TCTTCCTCTCGTGTTCCTCTC 58.562 52.381 0.00 0.00 0.00 3.20
228 229 2.588464 TCTTCCTCTCGTGTTCCTCT 57.412 50.000 0.00 0.00 0.00 3.69
229 230 2.820787 TCTTCTTCCTCTCGTGTTCCTC 59.179 50.000 0.00 0.00 0.00 3.71
230 231 2.877866 TCTTCTTCCTCTCGTGTTCCT 58.122 47.619 0.00 0.00 0.00 3.36
231 232 3.878160 ATCTTCTTCCTCTCGTGTTCC 57.122 47.619 0.00 0.00 0.00 3.62
232 233 5.124138 TCTGTATCTTCTTCCTCTCGTGTTC 59.876 44.000 0.00 0.00 0.00 3.18
233 234 5.010933 TCTGTATCTTCTTCCTCTCGTGTT 58.989 41.667 0.00 0.00 0.00 3.32
234 235 4.590918 TCTGTATCTTCTTCCTCTCGTGT 58.409 43.478 0.00 0.00 0.00 4.49
235 236 5.568685 TTCTGTATCTTCTTCCTCTCGTG 57.431 43.478 0.00 0.00 0.00 4.35
236 237 4.097286 GCTTCTGTATCTTCTTCCTCTCGT 59.903 45.833 0.00 0.00 0.00 4.18
237 238 4.097135 TGCTTCTGTATCTTCTTCCTCTCG 59.903 45.833 0.00 0.00 0.00 4.04
238 239 5.359576 TCTGCTTCTGTATCTTCTTCCTCTC 59.640 44.000 0.00 0.00 0.00 3.20
239 240 5.268387 TCTGCTTCTGTATCTTCTTCCTCT 58.732 41.667 0.00 0.00 0.00 3.69
240 241 5.590530 TCTGCTTCTGTATCTTCTTCCTC 57.409 43.478 0.00 0.00 0.00 3.71
241 242 5.104982 CCTTCTGCTTCTGTATCTTCTTCCT 60.105 44.000 0.00 0.00 0.00 3.36
242 243 5.115480 CCTTCTGCTTCTGTATCTTCTTCC 58.885 45.833 0.00 0.00 0.00 3.46
243 244 4.570369 GCCTTCTGCTTCTGTATCTTCTTC 59.430 45.833 0.00 0.00 36.87 2.87
244 245 4.512484 GCCTTCTGCTTCTGTATCTTCTT 58.488 43.478 0.00 0.00 36.87 2.52
245 246 4.135747 GCCTTCTGCTTCTGTATCTTCT 57.864 45.455 0.00 0.00 36.87 2.85
265 266 0.678048 AGGAATTGGACGGCTTCAGC 60.678 55.000 0.00 0.00 41.14 4.26
266 267 2.555199 CTAGGAATTGGACGGCTTCAG 58.445 52.381 0.00 0.00 0.00 3.02
267 268 1.406887 GCTAGGAATTGGACGGCTTCA 60.407 52.381 0.00 0.00 0.00 3.02
268 269 1.300481 GCTAGGAATTGGACGGCTTC 58.700 55.000 0.00 0.00 0.00 3.86
269 270 0.107165 GGCTAGGAATTGGACGGCTT 60.107 55.000 0.00 0.00 0.00 4.35
270 271 1.271840 TGGCTAGGAATTGGACGGCT 61.272 55.000 0.00 0.00 0.00 5.52
271 272 0.815615 CTGGCTAGGAATTGGACGGC 60.816 60.000 0.00 0.00 0.00 5.68
272 273 0.830648 TCTGGCTAGGAATTGGACGG 59.169 55.000 0.00 0.00 0.00 4.79
273 274 2.548920 GGATCTGGCTAGGAATTGGACG 60.549 54.545 0.00 0.00 0.00 4.79
274 275 2.708325 AGGATCTGGCTAGGAATTGGAC 59.292 50.000 0.00 0.00 0.00 4.02
281 282 4.103153 CCAATTGTTAGGATCTGGCTAGGA 59.897 45.833 4.43 0.00 0.00 2.94
288 289 6.878317 TCTGAGTACCAATTGTTAGGATCTG 58.122 40.000 4.43 0.00 0.00 2.90
341 343 0.595053 CGCGTCTCGTGGCTATGATT 60.595 55.000 0.00 0.00 33.47 2.57
457 459 2.758327 TGACGTAGATGGGCCGCT 60.758 61.111 0.00 0.77 0.00 5.52
556 559 2.579201 CTCCACCGCCTTGTCGAT 59.421 61.111 0.00 0.00 0.00 3.59
615 618 2.036098 TCGGCTTCTACCCCGTCA 59.964 61.111 0.00 0.00 44.63 4.35
623 626 1.475403 CTTGAGGAGGTCGGCTTCTA 58.525 55.000 0.00 0.00 0.00 2.10
624 627 1.893919 GCTTGAGGAGGTCGGCTTCT 61.894 60.000 0.00 0.00 0.00 2.85
693 696 1.089920 CACGCTCAAATCCCTCCAAG 58.910 55.000 0.00 0.00 0.00 3.61
749 752 1.899814 ACAGTGACGCCTTGAATCCTA 59.100 47.619 0.00 0.00 0.00 2.94
816 819 4.537945 TTCAGGTATACCTCTAGTGGCT 57.462 45.455 22.09 0.00 46.65 4.75
820 823 6.514063 GCGAAAATTCAGGTATACCTCTAGT 58.486 40.000 22.09 9.02 46.65 2.57
840 843 2.508439 GATGAACTCGGCCGCGAA 60.508 61.111 24.18 7.27 0.00 4.70
841 844 2.572095 AATGATGAACTCGGCCGCGA 62.572 55.000 24.18 3.76 0.00 5.87
897 900 1.452110 CATGGCCTGACGAACATGAA 58.548 50.000 3.32 0.00 42.39 2.57
939 942 5.105392 CGGATTCTTCCCATCAAAATTTGGA 60.105 40.000 5.83 0.00 39.01 3.53
945 948 3.443681 GCTTCGGATTCTTCCCATCAAAA 59.556 43.478 0.00 0.00 39.01 2.44
955 958 1.909700 TGCCAAAGCTTCGGATTCTT 58.090 45.000 7.89 0.00 40.80 2.52
1077 1080 4.737765 CGAACAAATTTGTGTTGAACCGAT 59.262 37.500 23.93 4.61 41.78 4.18
1080 1083 5.108405 CGATCGAACAAATTTGTGTTGAACC 60.108 40.000 23.93 15.11 41.78 3.62
1120 1123 0.445436 CGATTCAGAACTGCAGCACC 59.555 55.000 15.27 2.79 0.00 5.01
1148 1151 1.202927 CCAGGGAGTGATGTTGGTTGT 60.203 52.381 0.00 0.00 0.00 3.32
1161 1164 2.281761 AGTTTGCGCACCAGGGAG 60.282 61.111 11.12 0.00 0.00 4.30
1186 1189 2.213499 CACTGTCCCTGTCTGTTTCAC 58.787 52.381 0.00 0.00 0.00 3.18
1290 1293 3.586100 TTCAGACCATCGATGAAACGA 57.414 42.857 26.86 14.06 46.04 3.85
1363 1366 5.047802 CCTGAACAGCAACAATGGAATAAGT 60.048 40.000 0.00 0.00 0.00 2.24
1376 1379 2.517959 CCATTTCCTCCTGAACAGCAA 58.482 47.619 0.00 0.00 31.05 3.91
1418 1421 7.451877 ACATAGGTGTAGTATACCTCTTGGATG 59.548 40.741 20.80 18.95 45.19 3.51
1435 1438 6.475504 TGTCTGAATGATGAAACATAGGTGT 58.524 36.000 0.00 0.00 41.28 4.16
1448 1451 2.422519 GGCACCATCCTGTCTGAATGAT 60.423 50.000 0.00 0.00 0.00 2.45
1487 1490 5.741388 AGACTTGTCTGATGTTTTGTGAC 57.259 39.130 2.11 0.00 0.00 3.67
1488 1491 7.224753 GTCTTAGACTTGTCTGATGTTTTGTGA 59.775 37.037 12.99 0.00 0.00 3.58
1566 1569 2.878406 ACCACAGATGAAACAAAGTCCG 59.122 45.455 0.00 0.00 0.00 4.79
1636 1639 4.895668 ATTCCAACATTTCTTGCACCAT 57.104 36.364 0.00 0.00 0.00 3.55
1660 1663 3.537795 ATCCATGCTATCCAAGGCAAT 57.462 42.857 0.00 0.00 41.90 3.56
1661 1664 3.225104 GAATCCATGCTATCCAAGGCAA 58.775 45.455 0.00 0.00 41.90 4.52
1732 1735 2.314549 TGGCATTAGTTCCCCCTTGAAT 59.685 45.455 0.00 0.00 0.00 2.57
1752 1755 4.277672 CCCAATTGGCACTCTAATCTGATG 59.722 45.833 19.75 0.00 0.00 3.07
1887 1890 2.116238 GTACCTCCACCAGCAATCCTA 58.884 52.381 0.00 0.00 0.00 2.94
2018 2021 0.745845 CAAGGAGGACAGCCAATCCG 60.746 60.000 0.00 0.00 41.52 4.18
2093 2096 3.454812 ACAGCCTTATAAGAACACCGGAT 59.545 43.478 9.46 0.00 0.00 4.18
2267 2270 5.665459 GGTATTCTAGATCACAACTGCACT 58.335 41.667 0.00 0.00 0.00 4.40
2269 2272 4.159693 ACGGTATTCTAGATCACAACTGCA 59.840 41.667 0.00 0.00 0.00 4.41
2322 2326 3.140707 TCCGGTGAATACCTATAGGGACA 59.859 47.826 22.91 13.14 45.22 4.02
2324 2328 3.816842 GCTCCGGTGAATACCTATAGGGA 60.817 52.174 22.91 15.67 45.22 4.20
2331 2335 0.988832 TTTGGCTCCGGTGAATACCT 59.011 50.000 7.92 0.00 45.22 3.08
2378 2382 0.179004 TGACCCCAGTTCGCAACATT 60.179 50.000 2.61 0.00 0.00 2.71
2386 2390 0.613777 AGGAACGATGACCCCAGTTC 59.386 55.000 0.00 0.00 41.40 3.01
2519 2523 0.733729 GCTCGTCGATCACTGGTAGT 59.266 55.000 0.00 0.00 0.00 2.73
2541 2545 0.617413 AACCAGGTGAGCTCATCCAG 59.383 55.000 23.46 18.89 0.00 3.86
2564 2577 2.859992 GGCACGAAGATCCAGCTTT 58.140 52.632 0.00 0.00 0.00 3.51
2609 2622 6.936968 AAAGTTGTCTTATACTCCTCACCT 57.063 37.500 0.00 0.00 33.09 4.00
2635 2648 1.234615 ATAGTGCCCGTTGTGTGTGC 61.235 55.000 0.00 0.00 0.00 4.57
2688 2701 3.053395 ACAGATTGGAATGTACATGGCCT 60.053 43.478 21.86 8.73 0.00 5.19
2932 2945 0.323542 AGCAGGGTCAGTAGCTACGT 60.324 55.000 17.99 4.25 35.19 3.57
2972 2985 3.088532 CAAATTAGCAGGTACAGGCCAA 58.911 45.455 5.01 0.00 0.00 4.52
3036 3049 5.414454 TCATACCATAGTGGCAAACAAACTC 59.586 40.000 0.00 0.00 42.67 3.01
3045 3058 2.038952 GGCTGATCATACCATAGTGGCA 59.961 50.000 9.50 0.00 42.67 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.