Multiple sequence alignment - TraesCS4B01G312600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G312600 chr4B 100.000 3908 0 0 1 3908 602451598 602447691 0.000000e+00 7217
1 TraesCS4B01G312600 chr4B 80.885 497 83 7 1020 1510 650960791 650961281 7.920000e-102 381
2 TraesCS4B01G312600 chr4B 80.000 270 44 8 2623 2888 650962529 650962792 1.430000e-44 191
3 TraesCS4B01G312600 chr4D 94.002 1784 51 21 500 2250 477509161 477507401 0.000000e+00 2651
4 TraesCS4B01G312600 chr4D 90.000 900 44 22 2357 3218 477507404 477506513 0.000000e+00 1122
5 TraesCS4B01G312600 chr4D 87.946 448 40 10 3204 3639 477506473 477506028 2.080000e-142 516
6 TraesCS4B01G312600 chr4D 80.570 561 95 9 1020 1573 504328866 504329419 1.680000e-113 420
7 TraesCS4B01G312600 chr4D 84.469 367 34 16 1 345 477509645 477509280 1.340000e-89 340
8 TraesCS4B01G312600 chr4D 90.041 241 21 3 3670 3908 317420037 317419798 3.790000e-80 309
9 TraesCS4B01G312600 chr4D 79.259 270 46 8 2623 2888 504330512 504330775 3.100000e-41 180
10 TraesCS4B01G312600 chr4A 91.188 1793 88 32 500 2256 684271860 684270102 0.000000e+00 2372
11 TraesCS4B01G312600 chr4A 88.584 911 57 27 2348 3217 684270031 684269127 0.000000e+00 1062
12 TraesCS4B01G312600 chr4A 90.709 409 31 5 3234 3636 684398366 684398773 4.440000e-149 538
13 TraesCS4B01G312600 chr4A 89.873 395 32 5 3234 3623 684269053 684268662 5.830000e-138 501
14 TraesCS4B01G312600 chr4A 80.730 493 39 22 1 477 684272307 684271855 2.250000e-87 333
15 TraesCS4B01G312600 chr4A 91.026 234 19 2 3677 3908 641877833 641878066 8.150000e-82 315
16 TraesCS4B01G312600 chr1A 78.453 1564 261 49 999 2553 243162872 243161376 0.000000e+00 952
17 TraesCS4B01G312600 chr1D 80.270 1257 190 36 999 2250 194927340 194926137 0.000000e+00 894
18 TraesCS4B01G312600 chr1D 90.678 236 20 2 3675 3908 2129420 2129655 2.930000e-81 313
19 TraesCS4B01G312600 chr1B 80.370 1243 184 34 1015 2251 270792746 270793934 0.000000e+00 889
20 TraesCS4B01G312600 chr1B 90.638 235 19 3 3677 3908 283084436 283084670 3.790000e-80 309
21 TraesCS4B01G312600 chr6D 82.718 596 99 4 1022 1615 463549412 463548819 9.620000e-146 527
22 TraesCS4B01G312600 chr6D 90.717 237 19 3 3675 3908 68861851 68862087 2.930000e-81 313
23 TraesCS4B01G312600 chr5A 80.036 561 98 9 1020 1573 688973634 688974187 1.690000e-108 403
24 TraesCS4B01G312600 chr5A 78.652 267 53 4 2623 2888 688975378 688975641 1.440000e-39 174
25 TraesCS4B01G312600 chr6B 90.164 244 21 3 3667 3908 585557424 585557666 8.150000e-82 315
26 TraesCS4B01G312600 chr3B 90.123 243 22 2 3668 3908 494386593 494386351 8.150000e-82 315
27 TraesCS4B01G312600 chr2B 91.064 235 18 3 3674 3905 10878425 10878659 8.150000e-82 315
28 TraesCS4B01G312600 chr7B 89.113 248 23 4 3664 3908 370248123 370247877 4.910000e-79 305
29 TraesCS4B01G312600 chr6A 83.274 281 43 4 2632 2910 610205974 610206252 5.010000e-64 255


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G312600 chr4B 602447691 602451598 3907 True 7217.00 7217 100.00000 1 3908 1 chr4B.!!$R1 3907
1 TraesCS4B01G312600 chr4B 650960791 650962792 2001 False 286.00 381 80.44250 1020 2888 2 chr4B.!!$F1 1868
2 TraesCS4B01G312600 chr4D 477506028 477509645 3617 True 1157.25 2651 89.10425 1 3639 4 chr4D.!!$R2 3638
3 TraesCS4B01G312600 chr4D 504328866 504330775 1909 False 300.00 420 79.91450 1020 2888 2 chr4D.!!$F1 1868
4 TraesCS4B01G312600 chr4A 684268662 684272307 3645 True 1067.00 2372 87.59375 1 3623 4 chr4A.!!$R1 3622
5 TraesCS4B01G312600 chr1A 243161376 243162872 1496 True 952.00 952 78.45300 999 2553 1 chr1A.!!$R1 1554
6 TraesCS4B01G312600 chr1D 194926137 194927340 1203 True 894.00 894 80.27000 999 2250 1 chr1D.!!$R1 1251
7 TraesCS4B01G312600 chr1B 270792746 270793934 1188 False 889.00 889 80.37000 1015 2251 1 chr1B.!!$F1 1236
8 TraesCS4B01G312600 chr6D 463548819 463549412 593 True 527.00 527 82.71800 1022 1615 1 chr6D.!!$R1 593
9 TraesCS4B01G312600 chr5A 688973634 688975641 2007 False 288.50 403 79.34400 1020 2888 2 chr5A.!!$F1 1868

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
627 715 0.037046 GTCCCCGGTTTTCGCTAAGA 60.037 55.0 0.0 0.0 37.59 2.10 F
648 737 0.040514 TGCATCCGCTTTTGTGTTCG 60.041 50.0 0.0 0.0 39.64 3.95 F
2350 2545 0.322366 TGCCATGAATGAACTCGGCA 60.322 50.0 0.0 0.0 46.80 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2348 2543 0.035056 AGTAGGACACCTGCCAATGC 60.035 55.0 0.0 0.0 36.92 3.56 R
2579 3120 0.317160 CAGTTGCCAGGAGTACGTGA 59.683 55.0 0.0 0.0 34.32 4.35 R
3792 4766 0.039165 CCCAACTCTTTTTCCGCTGC 60.039 55.0 0.0 0.0 0.00 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 114 3.431415 CCCTTTATTTATAGCTGGCCCC 58.569 50.000 0.00 0.00 0.00 5.80
139 157 3.381590 TCCACTCGATCCAACATACAGAG 59.618 47.826 0.00 0.00 0.00 3.35
152 170 1.267121 TACAGAGCACCTCCACTTCC 58.733 55.000 0.00 0.00 0.00 3.46
171 197 1.001503 CCACTGCTCCTCCTCCTCT 59.998 63.158 0.00 0.00 0.00 3.69
189 215 2.880719 CTTCCTCGCTCTCGCCACAG 62.881 65.000 0.00 0.00 35.26 3.66
279 317 0.328258 AATCCCCAACCCGAGTTCAG 59.672 55.000 0.00 0.00 32.45 3.02
294 332 6.091441 CCCGAGTTCAGTTTCTTAGATTTCTG 59.909 42.308 0.00 0.00 0.00 3.02
311 350 3.868757 TCTGTCGGAAACCAGTCTATG 57.131 47.619 0.00 0.00 0.00 2.23
315 354 3.446161 TGTCGGAAACCAGTCTATGTAGG 59.554 47.826 0.00 0.00 0.00 3.18
321 360 2.667470 ACCAGTCTATGTAGGACGCAT 58.333 47.619 0.00 0.00 38.58 4.73
328 367 4.457603 GTCTATGTAGGACGCATGATCTCT 59.542 45.833 0.00 0.00 0.00 3.10
334 373 1.137872 GGACGCATGATCTCTTGTCCT 59.862 52.381 15.84 0.00 42.00 3.85
338 377 2.676176 CGCATGATCTCTTGTCCTGTGT 60.676 50.000 0.00 0.00 0.00 3.72
342 381 2.700371 TGATCTCTTGTCCTGTGTGTGT 59.300 45.455 0.00 0.00 0.00 3.72
346 385 1.277842 TCTTGTCCTGTGTGTGTGTGT 59.722 47.619 0.00 0.00 0.00 3.72
350 389 0.323302 TCCTGTGTGTGTGTGTGTGT 59.677 50.000 0.00 0.00 0.00 3.72
354 393 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
355 394 2.070028 GTGTGTGTGTGTGTGTGTGTA 58.930 47.619 0.00 0.00 0.00 2.90
356 395 2.675844 GTGTGTGTGTGTGTGTGTGTAT 59.324 45.455 0.00 0.00 0.00 2.29
357 396 2.675348 TGTGTGTGTGTGTGTGTGTATG 59.325 45.455 0.00 0.00 0.00 2.39
358 397 2.675844 GTGTGTGTGTGTGTGTGTATGT 59.324 45.455 0.00 0.00 0.00 2.29
359 398 2.675348 TGTGTGTGTGTGTGTGTATGTG 59.325 45.455 0.00 0.00 0.00 3.21
360 399 2.675844 GTGTGTGTGTGTGTGTATGTGT 59.324 45.455 0.00 0.00 0.00 3.72
361 400 2.675348 TGTGTGTGTGTGTGTATGTGTG 59.325 45.455 0.00 0.00 0.00 3.82
362 401 2.675844 GTGTGTGTGTGTGTATGTGTGT 59.324 45.455 0.00 0.00 0.00 3.72
374 413 0.662619 ATGTGTGTGTGTTCTTGGCG 59.337 50.000 0.00 0.00 0.00 5.69
401 440 2.975536 GGGTGGATTCGTGACGGA 59.024 61.111 4.70 0.00 0.00 4.69
402 441 1.520666 GGGTGGATTCGTGACGGAT 59.479 57.895 4.70 0.00 0.00 4.18
403 442 0.107848 GGGTGGATTCGTGACGGATT 60.108 55.000 4.70 0.00 0.00 3.01
404 443 1.677820 GGGTGGATTCGTGACGGATTT 60.678 52.381 4.70 0.00 0.00 2.17
405 444 2.081462 GGTGGATTCGTGACGGATTTT 58.919 47.619 4.70 0.00 0.00 1.82
430 478 3.298619 CAATCCATTGGTCCCAAGCATA 58.701 45.455 4.87 0.00 39.47 3.14
442 490 4.811557 GTCCCAAGCATATGTAGAACAGAC 59.188 45.833 4.29 0.45 0.00 3.51
444 492 4.384098 CCCAAGCATATGTAGAACAGACCA 60.384 45.833 4.29 0.00 0.00 4.02
456 519 7.574607 TGTAGAACAGACCATGAGATCTAGTA 58.425 38.462 0.00 0.00 0.00 1.82
458 521 9.727859 GTAGAACAGACCATGAGATCTAGTATA 57.272 37.037 0.00 0.00 0.00 1.47
460 523 8.444783 AGAACAGACCATGAGATCTAGTATAGT 58.555 37.037 0.00 0.00 40.38 2.12
462 525 8.630054 ACAGACCATGAGATCTAGTATAGTTC 57.370 38.462 0.00 0.00 40.38 3.01
463 526 7.389330 ACAGACCATGAGATCTAGTATAGTTCG 59.611 40.741 0.00 0.00 41.22 3.95
465 528 6.780901 ACCATGAGATCTAGTATAGTTCGGA 58.219 40.000 0.00 0.00 41.22 4.55
466 529 7.406916 ACCATGAGATCTAGTATAGTTCGGAT 58.593 38.462 0.00 0.00 41.22 4.18
467 530 7.338196 ACCATGAGATCTAGTATAGTTCGGATG 59.662 40.741 0.00 0.00 41.22 3.51
468 531 7.338196 CCATGAGATCTAGTATAGTTCGGATGT 59.662 40.741 0.00 0.00 41.22 3.06
469 532 7.674471 TGAGATCTAGTATAGTTCGGATGTG 57.326 40.000 0.00 0.00 41.22 3.21
470 533 7.225011 TGAGATCTAGTATAGTTCGGATGTGT 58.775 38.462 0.00 0.00 41.22 3.72
471 534 8.373220 TGAGATCTAGTATAGTTCGGATGTGTA 58.627 37.037 0.00 0.00 41.22 2.90
472 535 8.780846 AGATCTAGTATAGTTCGGATGTGTAG 57.219 38.462 0.00 0.00 41.22 2.74
473 536 7.825270 AGATCTAGTATAGTTCGGATGTGTAGG 59.175 40.741 0.00 0.00 41.22 3.18
474 537 6.236409 TCTAGTATAGTTCGGATGTGTAGGG 58.764 44.000 0.00 0.00 40.38 3.53
475 538 4.801164 AGTATAGTTCGGATGTGTAGGGT 58.199 43.478 0.00 0.00 0.00 4.34
476 539 5.206587 AGTATAGTTCGGATGTGTAGGGTT 58.793 41.667 0.00 0.00 0.00 4.11
477 540 5.659971 AGTATAGTTCGGATGTGTAGGGTTT 59.340 40.000 0.00 0.00 0.00 3.27
478 541 6.835488 AGTATAGTTCGGATGTGTAGGGTTTA 59.165 38.462 0.00 0.00 0.00 2.01
479 542 6.742559 ATAGTTCGGATGTGTAGGGTTTAT 57.257 37.500 0.00 0.00 0.00 1.40
480 543 5.019785 AGTTCGGATGTGTAGGGTTTATC 57.980 43.478 0.00 0.00 0.00 1.75
481 544 4.468510 AGTTCGGATGTGTAGGGTTTATCA 59.531 41.667 0.00 0.00 0.00 2.15
482 545 5.130477 AGTTCGGATGTGTAGGGTTTATCAT 59.870 40.000 0.00 0.00 0.00 2.45
483 546 5.209818 TCGGATGTGTAGGGTTTATCATC 57.790 43.478 0.00 0.00 0.00 2.92
484 547 3.987868 CGGATGTGTAGGGTTTATCATCG 59.012 47.826 0.00 0.00 34.43 3.84
485 548 4.315803 GGATGTGTAGGGTTTATCATCGG 58.684 47.826 0.00 0.00 34.43 4.18
486 549 3.188159 TGTGTAGGGTTTATCATCGGC 57.812 47.619 0.00 0.00 0.00 5.54
487 550 2.502130 TGTGTAGGGTTTATCATCGGCA 59.498 45.455 0.00 0.00 0.00 5.69
488 551 3.135712 TGTGTAGGGTTTATCATCGGCAT 59.864 43.478 0.00 0.00 0.00 4.40
489 552 3.498397 GTGTAGGGTTTATCATCGGCATG 59.502 47.826 0.00 0.00 0.00 4.06
490 553 3.135712 TGTAGGGTTTATCATCGGCATGT 59.864 43.478 0.00 0.00 0.00 3.21
491 554 2.575532 AGGGTTTATCATCGGCATGTG 58.424 47.619 0.00 0.00 0.00 3.21
492 555 2.092429 AGGGTTTATCATCGGCATGTGT 60.092 45.455 0.00 0.00 0.00 3.72
493 556 2.033299 GGGTTTATCATCGGCATGTGTG 59.967 50.000 0.00 0.00 0.00 3.82
494 557 2.033299 GGTTTATCATCGGCATGTGTGG 59.967 50.000 0.00 0.00 0.00 4.17
495 558 1.965935 TTATCATCGGCATGTGTGGG 58.034 50.000 0.00 0.00 0.00 4.61
496 559 1.127343 TATCATCGGCATGTGTGGGA 58.873 50.000 0.00 0.00 0.00 4.37
497 560 0.464373 ATCATCGGCATGTGTGGGAC 60.464 55.000 0.00 0.00 0.00 4.46
498 561 2.125147 ATCGGCATGTGTGGGACG 60.125 61.111 0.00 0.00 0.00 4.79
503 566 2.954684 GCATGTGTGGGACGAGGGA 61.955 63.158 0.00 0.00 0.00 4.20
508 571 0.899720 GTGTGGGACGAGGGATGTTA 59.100 55.000 0.00 0.00 0.00 2.41
511 574 2.574369 TGTGGGACGAGGGATGTTAATT 59.426 45.455 0.00 0.00 0.00 1.40
626 714 0.320946 TGTCCCCGGTTTTCGCTAAG 60.321 55.000 0.00 0.00 37.59 2.18
627 715 0.037046 GTCCCCGGTTTTCGCTAAGA 60.037 55.000 0.00 0.00 37.59 2.10
628 716 0.686224 TCCCCGGTTTTCGCTAAGAA 59.314 50.000 0.00 0.00 37.59 2.52
630 718 1.400494 CCCCGGTTTTCGCTAAGAATG 59.600 52.381 0.00 0.00 38.86 2.67
632 720 1.466950 CCGGTTTTCGCTAAGAATGCA 59.533 47.619 0.00 0.00 38.86 3.96
633 721 2.097466 CCGGTTTTCGCTAAGAATGCAT 59.903 45.455 0.00 0.00 38.86 3.96
637 725 0.937304 TTCGCTAAGAATGCATCCGC 59.063 50.000 0.00 0.00 33.14 5.54
648 737 0.040514 TGCATCCGCTTTTGTGTTCG 60.041 50.000 0.00 0.00 39.64 3.95
652 741 3.091022 CGCTTTTGTGTTCGCCGC 61.091 61.111 0.00 0.00 0.00 6.53
659 748 1.739338 TTGTGTTCGCCGCCCAAAAT 61.739 50.000 0.00 0.00 0.00 1.82
662 751 0.523966 TGTTCGCCGCCCAAAATTAG 59.476 50.000 0.00 0.00 0.00 1.73
679 771 6.481954 AAATTAGACTCATTTCGTCCACAC 57.518 37.500 0.00 0.00 31.83 3.82
749 841 7.141100 TCTTTAGCTTCCGGATTTAAAACTG 57.859 36.000 4.15 0.00 0.00 3.16
783 875 4.083590 GCTCGGATTTTGCAGGATATTCTC 60.084 45.833 0.00 0.00 0.00 2.87
787 879 5.059833 GGATTTTGCAGGATATTCTCGAGT 58.940 41.667 13.13 0.00 0.00 4.18
789 881 6.293135 GGATTTTGCAGGATATTCTCGAGTTC 60.293 42.308 13.13 5.70 0.00 3.01
875 986 2.487265 CCTCCGATTAACCTGGGGATTG 60.487 54.545 0.00 0.00 0.00 2.67
876 987 2.438021 CTCCGATTAACCTGGGGATTGA 59.562 50.000 0.00 0.00 0.00 2.57
886 997 2.449464 CTGGGGATTGATTGCTGTTCA 58.551 47.619 0.00 0.00 0.00 3.18
892 1003 4.574013 GGGATTGATTGCTGTTCACTCTAG 59.426 45.833 0.00 0.00 0.00 2.43
914 1025 3.579151 GTGTACTGTTCTTTCCCCTCTCT 59.421 47.826 0.00 0.00 0.00 3.10
923 1034 1.198713 TTCCCCTCTCTTAGCTGCTG 58.801 55.000 13.43 0.00 0.00 4.41
924 1035 1.145819 CCCCTCTCTTAGCTGCTGC 59.854 63.158 13.43 7.62 40.05 5.25
925 1036 1.227205 CCCTCTCTTAGCTGCTGCG 60.227 63.158 13.43 2.93 45.42 5.18
943 1054 2.037121 TGCGACAGGTTCTTGATCTTCA 59.963 45.455 0.00 0.00 0.00 3.02
953 1067 5.009010 GGTTCTTGATCTTCAAAGTGCAGAA 59.991 40.000 0.00 0.00 35.73 3.02
958 1072 4.637534 TGATCTTCAAAGTGCAGAATAGCC 59.362 41.667 0.00 0.00 0.00 3.93
977 1095 5.331876 AGCCAGTAGTAGAATTCTGTGTC 57.668 43.478 18.47 6.36 0.00 3.67
1548 1671 3.787001 GGCCAGTTCCTCCTCGGG 61.787 72.222 0.00 0.00 0.00 5.14
1911 2091 1.756375 GCATGTCGCACGAGATGGTC 61.756 60.000 25.44 10.89 43.46 4.02
2202 2397 3.760035 ATCACCGCCGCTCTCGTT 61.760 61.111 0.00 0.00 0.00 3.85
2246 2441 2.604686 ACAGGCCTGCCTCGAGAA 60.605 61.111 33.06 0.17 46.28 2.87
2247 2442 2.186384 CAGGCCTGCCTCGAGAAG 59.814 66.667 22.33 10.97 46.28 2.85
2248 2443 3.080121 AGGCCTGCCTCGAGAAGG 61.080 66.667 22.96 22.96 44.43 3.46
2257 2452 2.091499 TGCCTCGAGAAGGTAATCCCTA 60.091 50.000 15.71 0.00 45.47 3.53
2258 2453 3.166679 GCCTCGAGAAGGTAATCCCTAT 58.833 50.000 15.71 0.00 45.47 2.57
2259 2454 4.202641 TGCCTCGAGAAGGTAATCCCTATA 60.203 45.833 15.71 0.00 45.47 1.31
2260 2455 4.957327 GCCTCGAGAAGGTAATCCCTATAT 59.043 45.833 15.71 0.00 45.47 0.86
2261 2456 5.163499 GCCTCGAGAAGGTAATCCCTATATG 60.163 48.000 15.71 0.00 45.47 1.78
2262 2457 6.188407 CCTCGAGAAGGTAATCCCTATATGA 58.812 44.000 15.71 0.00 45.47 2.15
2263 2458 6.836527 CCTCGAGAAGGTAATCCCTATATGAT 59.163 42.308 15.71 0.00 45.47 2.45
2264 2459 7.343316 CCTCGAGAAGGTAATCCCTATATGATT 59.657 40.741 15.71 3.85 45.47 2.57
2265 2460 8.666129 TCGAGAAGGTAATCCCTATATGATTT 57.334 34.615 3.72 0.00 45.47 2.17
2266 2461 9.101325 TCGAGAAGGTAATCCCTATATGATTTT 57.899 33.333 3.72 0.00 45.47 1.82
2267 2462 9.372369 CGAGAAGGTAATCCCTATATGATTTTC 57.628 37.037 3.72 3.11 45.47 2.29
2278 2473 9.578576 TCCCTATATGATTTTCTTTCTTCCATG 57.421 33.333 0.00 0.00 0.00 3.66
2279 2474 9.578576 CCCTATATGATTTTCTTTCTTCCATGA 57.421 33.333 0.00 0.00 0.00 3.07
2285 2480 8.821147 TGATTTTCTTTCTTCCATGAACAATG 57.179 30.769 0.00 0.00 35.89 2.82
2286 2481 8.640651 TGATTTTCTTTCTTCCATGAACAATGA 58.359 29.630 0.00 0.00 38.72 2.57
2287 2482 9.136952 GATTTTCTTTCTTCCATGAACAATGAG 57.863 33.333 0.00 0.00 38.72 2.90
2288 2483 5.633830 TCTTTCTTCCATGAACAATGAGC 57.366 39.130 0.00 0.00 38.72 4.26
2289 2484 5.072055 TCTTTCTTCCATGAACAATGAGCA 58.928 37.500 0.00 0.00 38.72 4.26
2290 2485 5.713389 TCTTTCTTCCATGAACAATGAGCAT 59.287 36.000 0.00 0.00 38.72 3.79
2291 2486 6.885918 TCTTTCTTCCATGAACAATGAGCATA 59.114 34.615 0.00 0.00 38.72 3.14
2292 2487 7.558807 TCTTTCTTCCATGAACAATGAGCATAT 59.441 33.333 0.00 0.00 38.72 1.78
2293 2488 8.750515 TTTCTTCCATGAACAATGAGCATATA 57.249 30.769 0.00 0.00 38.72 0.86
2294 2489 8.929260 TTCTTCCATGAACAATGAGCATATAT 57.071 30.769 0.00 0.00 38.72 0.86
2295 2490 8.929260 TCTTCCATGAACAATGAGCATATATT 57.071 30.769 0.00 0.00 38.72 1.28
2296 2491 9.358406 TCTTCCATGAACAATGAGCATATATTT 57.642 29.630 0.00 0.00 38.72 1.40
2304 2499 9.655769 GAACAATGAGCATATATTTATATGGCG 57.344 33.333 15.81 0.00 43.53 5.69
2305 2500 8.737168 ACAATGAGCATATATTTATATGGCGT 57.263 30.769 15.81 0.00 43.53 5.68
2306 2501 8.830580 ACAATGAGCATATATTTATATGGCGTC 58.169 33.333 15.81 9.70 43.53 5.19
2307 2502 7.969536 ATGAGCATATATTTATATGGCGTCC 57.030 36.000 15.81 3.25 43.53 4.79
2308 2503 7.124573 TGAGCATATATTTATATGGCGTCCT 57.875 36.000 15.81 6.91 43.53 3.85
2309 2504 8.245195 TGAGCATATATTTATATGGCGTCCTA 57.755 34.615 15.81 0.00 43.53 2.94
2310 2505 8.141909 TGAGCATATATTTATATGGCGTCCTAC 58.858 37.037 15.81 1.65 43.53 3.18
2311 2506 8.251383 AGCATATATTTATATGGCGTCCTACT 57.749 34.615 15.81 3.39 43.53 2.57
2312 2507 8.361139 AGCATATATTTATATGGCGTCCTACTC 58.639 37.037 15.81 0.60 43.53 2.59
2313 2508 7.326305 GCATATATTTATATGGCGTCCTACTCG 59.674 40.741 15.81 0.00 43.53 4.18
2314 2509 8.565416 CATATATTTATATGGCGTCCTACTCGA 58.435 37.037 8.97 0.00 41.00 4.04
2315 2510 5.916661 ATTTATATGGCGTCCTACTCGAT 57.083 39.130 0.00 0.00 0.00 3.59
2316 2511 4.959596 TTATATGGCGTCCTACTCGATC 57.040 45.455 0.00 0.00 0.00 3.69
2317 2512 1.154197 TATGGCGTCCTACTCGATCG 58.846 55.000 9.36 9.36 0.00 3.69
2318 2513 0.818445 ATGGCGTCCTACTCGATCGT 60.818 55.000 15.94 0.00 0.00 3.73
2319 2514 1.028330 TGGCGTCCTACTCGATCGTT 61.028 55.000 15.94 6.12 0.00 3.85
2320 2515 0.591741 GGCGTCCTACTCGATCGTTG 60.592 60.000 15.94 11.74 0.00 4.10
2321 2516 1.201098 GCGTCCTACTCGATCGTTGC 61.201 60.000 15.94 5.13 0.00 4.17
2322 2517 0.377554 CGTCCTACTCGATCGTTGCT 59.622 55.000 15.94 0.00 0.00 3.91
2323 2518 1.828832 GTCCTACTCGATCGTTGCTG 58.171 55.000 15.94 2.83 0.00 4.41
2324 2519 1.400846 GTCCTACTCGATCGTTGCTGA 59.599 52.381 15.94 5.24 0.00 4.26
2325 2520 2.033550 GTCCTACTCGATCGTTGCTGAT 59.966 50.000 15.94 0.00 0.00 2.90
2326 2521 2.290916 TCCTACTCGATCGTTGCTGATC 59.709 50.000 15.94 4.66 41.10 2.92
2327 2522 2.292016 CCTACTCGATCGTTGCTGATCT 59.708 50.000 15.94 0.00 42.10 2.75
2328 2523 3.498777 CCTACTCGATCGTTGCTGATCTA 59.501 47.826 15.94 0.00 42.10 1.98
2329 2524 3.617540 ACTCGATCGTTGCTGATCTAG 57.382 47.619 15.94 3.28 42.10 2.43
2342 2537 4.004196 CTGATCTAGCTGCCATGAATGA 57.996 45.455 0.00 0.00 0.00 2.57
2343 2538 4.386711 CTGATCTAGCTGCCATGAATGAA 58.613 43.478 0.00 0.00 0.00 2.57
2344 2539 4.132336 TGATCTAGCTGCCATGAATGAAC 58.868 43.478 0.00 0.00 0.00 3.18
2345 2540 3.920231 TCTAGCTGCCATGAATGAACT 57.080 42.857 0.00 0.00 0.00 3.01
2346 2541 3.801698 TCTAGCTGCCATGAATGAACTC 58.198 45.455 0.00 0.00 0.00 3.01
2347 2542 1.376543 AGCTGCCATGAATGAACTCG 58.623 50.000 0.00 0.00 0.00 4.18
2348 2543 0.379669 GCTGCCATGAATGAACTCGG 59.620 55.000 0.00 0.00 0.00 4.63
2349 2544 0.379669 CTGCCATGAATGAACTCGGC 59.620 55.000 0.00 0.00 40.02 5.54
2350 2545 0.322366 TGCCATGAATGAACTCGGCA 60.322 50.000 0.00 0.00 46.80 5.69
2351 2546 1.027357 GCCATGAATGAACTCGGCAT 58.973 50.000 0.00 0.00 39.38 4.40
2352 2547 1.406539 GCCATGAATGAACTCGGCATT 59.593 47.619 0.00 0.00 39.38 3.56
2353 2548 2.797087 GCCATGAATGAACTCGGCATTG 60.797 50.000 0.00 0.00 39.38 2.82
2354 2549 2.223641 CCATGAATGAACTCGGCATTGG 60.224 50.000 0.00 0.00 36.19 3.16
2355 2550 0.810648 TGAATGAACTCGGCATTGGC 59.189 50.000 0.00 0.00 36.19 4.52
2513 2816 2.427245 CCTCGGCCTCGTCATCCTT 61.427 63.158 0.00 0.00 37.69 3.36
2555 3095 5.897050 TCAAATGTTCCAACAGGTAACAAC 58.103 37.500 0.00 0.00 43.04 3.32
2556 3096 4.561735 AATGTTCCAACAGGTAACAACG 57.438 40.909 0.00 0.00 43.04 4.10
2577 3118 6.300354 ACGACAATACTTCTGAACTTTTGG 57.700 37.500 0.00 0.00 0.00 3.28
2579 3120 6.317893 ACGACAATACTTCTGAACTTTTGGTT 59.682 34.615 0.00 0.00 41.40 3.67
2603 3147 2.162681 GTACTCCTGGCAACTGCAAAT 58.837 47.619 3.76 0.00 44.36 2.32
2621 3169 4.383948 GCAAATTGCAGTGCTCTAAAGAAC 59.616 41.667 17.60 0.00 44.26 3.01
2633 3302 4.338400 GCTCTAAAGAACTTTTGGTGGTGT 59.662 41.667 5.14 0.00 34.23 4.16
2913 3785 2.169832 TCAGCAGCTACTGAACCAAC 57.830 50.000 14.47 0.00 43.59 3.77
2941 3818 8.874744 AGAAACTGAACATAGTAGTACTACCA 57.125 34.615 25.97 15.80 36.75 3.25
2991 3874 7.708051 TCTTCTTCAATAATGGAGACTACTCG 58.292 38.462 0.00 0.00 41.04 4.18
3011 3894 3.554324 TCGTGTAAAATCGATAGGCTTGC 59.446 43.478 0.00 0.00 0.00 4.01
3013 3896 3.003378 GTGTAAAATCGATAGGCTTGCCC 59.997 47.826 8.17 0.00 0.00 5.36
3040 3923 4.138290 ACCCGATTGTGTTTTGTGTATCA 58.862 39.130 0.00 0.00 0.00 2.15
3041 3924 4.215399 ACCCGATTGTGTTTTGTGTATCAG 59.785 41.667 0.00 0.00 0.00 2.90
3042 3925 4.215399 CCCGATTGTGTTTTGTGTATCAGT 59.785 41.667 0.00 0.00 0.00 3.41
3051 3939 7.041440 TGTGTTTTGTGTATCAGTAATCAGTGG 60.041 37.037 0.00 0.00 0.00 4.00
3089 3977 0.804933 CTAAAGCAGACGGCCGGTAC 60.805 60.000 31.76 19.83 46.50 3.34
3143 4036 8.786898 CATTTTCAGATTTCTCAACTTGGAGTA 58.213 33.333 0.00 0.00 36.30 2.59
3144 4037 7.969536 TTTCAGATTTCTCAACTTGGAGTAG 57.030 36.000 0.00 0.00 36.30 2.57
3145 4038 5.482908 TCAGATTTCTCAACTTGGAGTAGC 58.517 41.667 0.00 0.00 36.30 3.58
3146 4039 4.633565 CAGATTTCTCAACTTGGAGTAGCC 59.366 45.833 0.00 0.00 36.30 3.93
3156 4054 2.755952 TGGAGTAGCCTGCAGATAGA 57.244 50.000 17.39 0.00 33.66 1.98
3248 4214 2.409371 GCGTAGTTTGTTCACTACACGC 60.409 50.000 10.73 8.19 46.66 5.34
3310 4276 3.574396 AGAAGTCTGCTACTGCTGTGTAA 59.426 43.478 6.48 0.00 43.12 2.41
3311 4277 3.584406 AGTCTGCTACTGCTGTGTAAG 57.416 47.619 6.48 0.00 36.93 2.34
3312 4278 3.157881 AGTCTGCTACTGCTGTGTAAGA 58.842 45.455 6.48 3.59 36.93 2.10
3359 4329 6.581171 AAGTTGGAAAAGATTGATCAGGTC 57.419 37.500 0.00 0.00 0.00 3.85
3361 4331 3.609853 TGGAAAAGATTGATCAGGTCGG 58.390 45.455 0.00 0.00 0.00 4.79
3375 4345 1.374758 GTCGGTGCTGCTGCTAGTT 60.375 57.895 17.00 0.00 40.48 2.24
3376 4346 1.079819 TCGGTGCTGCTGCTAGTTC 60.080 57.895 17.00 2.64 40.48 3.01
3393 4363 5.338463 GCTAGTTCTGTGGGTCCTAAATTCT 60.338 44.000 0.00 0.00 0.00 2.40
3405 4375 4.023291 TCCTAAATTCTTTGGTGCCATCC 58.977 43.478 0.00 0.00 0.00 3.51
3409 4379 0.326595 TTCTTTGGTGCCATCCGCTA 59.673 50.000 0.00 0.00 38.78 4.26
3494 4467 3.733337 CAGAACTACTGGCCACCATATC 58.267 50.000 0.00 0.00 42.39 1.63
3525 4498 3.434637 CAAACACGGTATAAGCCAATGC 58.565 45.455 0.00 0.00 37.95 3.56
3562 4536 1.900486 GGGTAGTGCTAACAGTGGACT 59.100 52.381 0.00 0.00 39.38 3.85
3584 4558 4.162040 AGGCTTCTTCCATATTGAGGTG 57.838 45.455 0.00 0.00 0.00 4.00
3594 4568 4.080356 TCCATATTGAGGTGGAAGACAAGG 60.080 45.833 0.00 0.00 41.36 3.61
3610 4584 3.744660 ACAAGGATGAAAGTGACTGGTC 58.255 45.455 0.00 0.00 0.00 4.02
3611 4585 3.136443 ACAAGGATGAAAGTGACTGGTCA 59.864 43.478 0.00 0.00 37.24 4.02
3623 4597 1.880027 GACTGGTCAAACTTCGGCAAT 59.120 47.619 0.00 0.00 0.00 3.56
3626 4600 1.336440 TGGTCAAACTTCGGCAATGTG 59.664 47.619 0.00 0.00 0.00 3.21
3632 4606 2.203408 TTCGGCAATGTGGGCACA 60.203 55.556 0.00 0.00 46.44 4.57
3652 4626 5.443185 ACATTTGTTGTGGATCAGTGAAG 57.557 39.130 0.00 0.00 37.11 3.02
3653 4627 5.132502 ACATTTGTTGTGGATCAGTGAAGA 58.867 37.500 0.00 0.00 37.11 2.87
3654 4628 5.240183 ACATTTGTTGTGGATCAGTGAAGAG 59.760 40.000 0.00 0.00 37.11 2.85
3655 4629 3.407424 TGTTGTGGATCAGTGAAGAGG 57.593 47.619 0.00 0.00 0.00 3.69
3656 4630 2.038952 TGTTGTGGATCAGTGAAGAGGG 59.961 50.000 0.00 0.00 0.00 4.30
3657 4631 1.279496 TGTGGATCAGTGAAGAGGGG 58.721 55.000 0.00 0.00 0.00 4.79
3658 4632 0.107459 GTGGATCAGTGAAGAGGGGC 60.107 60.000 0.00 0.00 0.00 5.80
3659 4633 0.252881 TGGATCAGTGAAGAGGGGCT 60.253 55.000 0.00 0.00 0.00 5.19
3660 4634 0.179936 GGATCAGTGAAGAGGGGCTG 59.820 60.000 0.00 0.00 0.00 4.85
3661 4635 0.463474 GATCAGTGAAGAGGGGCTGC 60.463 60.000 0.00 0.00 0.00 5.25
3662 4636 1.203441 ATCAGTGAAGAGGGGCTGCA 61.203 55.000 0.50 0.00 0.00 4.41
3663 4637 1.376942 CAGTGAAGAGGGGCTGCAG 60.377 63.158 10.11 10.11 30.92 4.41
3664 4638 1.537397 AGTGAAGAGGGGCTGCAGA 60.537 57.895 20.43 0.00 30.92 4.26
3665 4639 1.130054 AGTGAAGAGGGGCTGCAGAA 61.130 55.000 20.43 0.00 30.92 3.02
3666 4640 0.250901 GTGAAGAGGGGCTGCAGAAA 60.251 55.000 20.43 0.00 30.92 2.52
3667 4641 0.700564 TGAAGAGGGGCTGCAGAAAT 59.299 50.000 20.43 0.00 0.00 2.17
3668 4642 1.101331 GAAGAGGGGCTGCAGAAATG 58.899 55.000 20.43 0.00 0.00 2.32
3669 4643 0.969409 AAGAGGGGCTGCAGAAATGC 60.969 55.000 20.43 1.13 0.00 3.56
3670 4644 1.379576 GAGGGGCTGCAGAAATGCT 60.380 57.895 20.43 0.00 35.49 3.79
3671 4645 0.969409 GAGGGGCTGCAGAAATGCTT 60.969 55.000 20.43 0.00 35.49 3.91
3672 4646 0.543646 AGGGGCTGCAGAAATGCTTT 60.544 50.000 20.43 0.00 35.49 3.51
3673 4647 0.390735 GGGGCTGCAGAAATGCTTTG 60.391 55.000 20.43 0.00 35.49 2.77
3674 4648 0.319405 GGGCTGCAGAAATGCTTTGT 59.681 50.000 20.43 0.00 35.49 2.83
3675 4649 1.425412 GGCTGCAGAAATGCTTTGTG 58.575 50.000 20.43 0.00 37.03 3.33
3676 4650 1.269936 GGCTGCAGAAATGCTTTGTGT 60.270 47.619 20.43 0.00 36.40 3.72
3677 4651 2.476821 GCTGCAGAAATGCTTTGTGTT 58.523 42.857 20.43 0.00 36.40 3.32
3678 4652 3.552684 GGCTGCAGAAATGCTTTGTGTTA 60.553 43.478 20.43 0.00 36.40 2.41
3679 4653 3.671928 GCTGCAGAAATGCTTTGTGTTAG 59.328 43.478 20.43 7.29 36.40 2.34
3680 4654 4.232221 CTGCAGAAATGCTTTGTGTTAGG 58.768 43.478 8.42 0.00 36.40 2.69
3681 4655 3.636300 TGCAGAAATGCTTTGTGTTAGGT 59.364 39.130 1.53 0.00 36.40 3.08
3682 4656 4.099266 TGCAGAAATGCTTTGTGTTAGGTT 59.901 37.500 1.53 0.00 36.40 3.50
3683 4657 4.681483 GCAGAAATGCTTTGTGTTAGGTTC 59.319 41.667 7.32 0.00 36.40 3.62
3684 4658 5.507985 GCAGAAATGCTTTGTGTTAGGTTCT 60.508 40.000 7.32 0.00 36.40 3.01
3685 4659 6.293955 GCAGAAATGCTTTGTGTTAGGTTCTA 60.294 38.462 7.32 0.00 36.40 2.10
3686 4660 7.078228 CAGAAATGCTTTGTGTTAGGTTCTAC 58.922 38.462 0.00 0.00 0.00 2.59
3687 4661 5.607119 AATGCTTTGTGTTAGGTTCTACG 57.393 39.130 0.00 0.00 0.00 3.51
3688 4662 3.395639 TGCTTTGTGTTAGGTTCTACGG 58.604 45.455 0.00 0.00 0.00 4.02
3689 4663 3.181463 TGCTTTGTGTTAGGTTCTACGGT 60.181 43.478 0.00 0.00 0.00 4.83
3690 4664 4.039004 TGCTTTGTGTTAGGTTCTACGGTA 59.961 41.667 0.00 0.00 0.00 4.02
3691 4665 4.624452 GCTTTGTGTTAGGTTCTACGGTAG 59.376 45.833 8.91 8.91 0.00 3.18
3692 4666 4.789012 TTGTGTTAGGTTCTACGGTAGG 57.211 45.455 14.82 0.00 0.00 3.18
3693 4667 4.032960 TGTGTTAGGTTCTACGGTAGGA 57.967 45.455 14.82 3.44 0.00 2.94
3694 4668 4.603131 TGTGTTAGGTTCTACGGTAGGAT 58.397 43.478 14.82 0.00 0.00 3.24
3695 4669 4.400251 TGTGTTAGGTTCTACGGTAGGATG 59.600 45.833 14.82 0.00 0.00 3.51
3696 4670 4.400567 GTGTTAGGTTCTACGGTAGGATGT 59.599 45.833 14.82 1.12 0.00 3.06
3697 4671 4.400251 TGTTAGGTTCTACGGTAGGATGTG 59.600 45.833 14.82 0.00 0.00 3.21
3698 4672 3.097342 AGGTTCTACGGTAGGATGTGT 57.903 47.619 14.82 0.00 0.00 3.72
3699 4673 3.022406 AGGTTCTACGGTAGGATGTGTC 58.978 50.000 14.82 0.00 0.00 3.67
3700 4674 2.223433 GGTTCTACGGTAGGATGTGTCG 60.223 54.545 14.82 0.00 0.00 4.35
3701 4675 2.679837 GTTCTACGGTAGGATGTGTCGA 59.320 50.000 14.82 0.00 0.00 4.20
3702 4676 2.283298 TCTACGGTAGGATGTGTCGAC 58.717 52.381 14.82 9.11 0.00 4.20
3703 4677 2.093288 TCTACGGTAGGATGTGTCGACT 60.093 50.000 17.92 0.00 0.00 4.18
3704 4678 1.542492 ACGGTAGGATGTGTCGACTT 58.458 50.000 17.92 1.22 0.00 3.01
3705 4679 1.471684 ACGGTAGGATGTGTCGACTTC 59.528 52.381 17.92 10.70 0.00 3.01
3706 4680 1.471287 CGGTAGGATGTGTCGACTTCA 59.529 52.381 17.92 15.70 0.00 3.02
3707 4681 2.094906 CGGTAGGATGTGTCGACTTCAA 60.095 50.000 17.92 0.00 0.00 2.69
3708 4682 3.613193 CGGTAGGATGTGTCGACTTCAAA 60.613 47.826 17.92 0.00 0.00 2.69
3709 4683 4.504858 GGTAGGATGTGTCGACTTCAAAT 58.495 43.478 17.92 0.00 0.00 2.32
3710 4684 4.935808 GGTAGGATGTGTCGACTTCAAATT 59.064 41.667 17.92 8.12 0.00 1.82
3711 4685 6.103997 GGTAGGATGTGTCGACTTCAAATTA 58.896 40.000 17.92 7.30 0.00 1.40
3712 4686 6.592607 GGTAGGATGTGTCGACTTCAAATTAA 59.407 38.462 17.92 0.00 0.00 1.40
3713 4687 7.118680 GGTAGGATGTGTCGACTTCAAATTAAA 59.881 37.037 17.92 0.00 0.00 1.52
3714 4688 7.504924 AGGATGTGTCGACTTCAAATTAAAA 57.495 32.000 17.92 0.00 0.00 1.52
3715 4689 8.110860 AGGATGTGTCGACTTCAAATTAAAAT 57.889 30.769 17.92 0.00 0.00 1.82
3716 4690 8.576442 AGGATGTGTCGACTTCAAATTAAAATT 58.424 29.630 17.92 0.00 0.00 1.82
3717 4691 9.191995 GGATGTGTCGACTTCAAATTAAAATTT 57.808 29.630 17.92 0.00 39.07 1.82
3719 4693 8.568732 TGTGTCGACTTCAAATTAAAATTTCC 57.431 30.769 17.92 0.00 36.52 3.13
3720 4694 8.410141 TGTGTCGACTTCAAATTAAAATTTCCT 58.590 29.630 17.92 0.00 36.52 3.36
3721 4695 9.887406 GTGTCGACTTCAAATTAAAATTTCCTA 57.113 29.630 17.92 0.00 36.52 2.94
3722 4696 9.887406 TGTCGACTTCAAATTAAAATTTCCTAC 57.113 29.630 17.92 0.00 36.52 3.18
3723 4697 9.047871 GTCGACTTCAAATTAAAATTTCCTACG 57.952 33.333 8.70 0.00 36.52 3.51
3724 4698 8.776470 TCGACTTCAAATTAAAATTTCCTACGT 58.224 29.630 0.00 0.00 36.52 3.57
3725 4699 8.837059 CGACTTCAAATTAAAATTTCCTACGTG 58.163 33.333 0.00 0.00 36.52 4.49
3726 4700 8.515473 ACTTCAAATTAAAATTTCCTACGTGC 57.485 30.769 0.00 0.00 36.52 5.34
3727 4701 8.138712 ACTTCAAATTAAAATTTCCTACGTGCA 58.861 29.630 0.00 0.00 36.52 4.57
3728 4702 8.514136 TTCAAATTAAAATTTCCTACGTGCAG 57.486 30.769 0.00 0.00 36.52 4.41
3729 4703 7.877003 TCAAATTAAAATTTCCTACGTGCAGA 58.123 30.769 0.00 0.00 36.52 4.26
3730 4704 8.353684 TCAAATTAAAATTTCCTACGTGCAGAA 58.646 29.630 0.00 0.00 36.52 3.02
3731 4705 8.424731 CAAATTAAAATTTCCTACGTGCAGAAC 58.575 33.333 0.00 0.00 36.52 3.01
3732 4706 6.621316 TTAAAATTTCCTACGTGCAGAACA 57.379 33.333 0.00 0.00 0.00 3.18
3733 4707 5.508200 AAAATTTCCTACGTGCAGAACAA 57.492 34.783 0.00 0.00 0.00 2.83
3734 4708 4.483476 AATTTCCTACGTGCAGAACAAC 57.517 40.909 0.00 0.00 0.00 3.32
3735 4709 1.873698 TTCCTACGTGCAGAACAACC 58.126 50.000 0.00 0.00 0.00 3.77
3736 4710 0.753867 TCCTACGTGCAGAACAACCA 59.246 50.000 0.00 0.00 0.00 3.67
3737 4711 1.148310 CCTACGTGCAGAACAACCAG 58.852 55.000 0.00 0.00 0.00 4.00
3738 4712 1.270094 CCTACGTGCAGAACAACCAGA 60.270 52.381 0.00 0.00 0.00 3.86
3739 4713 2.479837 CTACGTGCAGAACAACCAGAA 58.520 47.619 0.00 0.00 0.00 3.02
3740 4714 1.745232 ACGTGCAGAACAACCAGAAA 58.255 45.000 0.00 0.00 0.00 2.52
3741 4715 1.400494 ACGTGCAGAACAACCAGAAAC 59.600 47.619 0.00 0.00 0.00 2.78
3742 4716 1.400142 CGTGCAGAACAACCAGAAACA 59.600 47.619 0.00 0.00 0.00 2.83
3743 4717 2.033299 CGTGCAGAACAACCAGAAACAT 59.967 45.455 0.00 0.00 0.00 2.71
3744 4718 3.374745 GTGCAGAACAACCAGAAACATG 58.625 45.455 0.00 0.00 0.00 3.21
3745 4719 2.223782 TGCAGAACAACCAGAAACATGC 60.224 45.455 0.00 0.00 0.00 4.06
3746 4720 2.035066 GCAGAACAACCAGAAACATGCT 59.965 45.455 0.00 0.00 0.00 3.79
3747 4721 3.253188 GCAGAACAACCAGAAACATGCTA 59.747 43.478 0.00 0.00 0.00 3.49
3748 4722 4.787598 CAGAACAACCAGAAACATGCTAC 58.212 43.478 0.00 0.00 0.00 3.58
3749 4723 3.498397 AGAACAACCAGAAACATGCTACG 59.502 43.478 0.00 0.00 0.00 3.51
3750 4724 2.151202 ACAACCAGAAACATGCTACGG 58.849 47.619 0.00 0.00 0.00 4.02
3751 4725 1.468520 CAACCAGAAACATGCTACGGG 59.531 52.381 0.00 0.00 0.00 5.28
3752 4726 0.981183 ACCAGAAACATGCTACGGGA 59.019 50.000 9.00 0.00 0.00 5.14
3753 4727 1.349688 ACCAGAAACATGCTACGGGAA 59.650 47.619 9.00 0.00 0.00 3.97
3754 4728 2.026262 ACCAGAAACATGCTACGGGAAT 60.026 45.455 9.00 0.00 0.00 3.01
3755 4729 2.355756 CCAGAAACATGCTACGGGAATG 59.644 50.000 0.00 0.00 37.01 2.67
3756 4730 2.355756 CAGAAACATGCTACGGGAATGG 59.644 50.000 0.00 0.00 35.27 3.16
3757 4731 2.238646 AGAAACATGCTACGGGAATGGA 59.761 45.455 0.00 0.00 35.27 3.41
3758 4732 3.117888 AGAAACATGCTACGGGAATGGAT 60.118 43.478 0.00 0.00 35.27 3.41
3759 4733 2.550830 ACATGCTACGGGAATGGATC 57.449 50.000 0.00 0.00 35.27 3.36
3760 4734 1.768275 ACATGCTACGGGAATGGATCA 59.232 47.619 0.00 0.00 35.27 2.92
3761 4735 2.146342 CATGCTACGGGAATGGATCAC 58.854 52.381 0.00 0.00 0.00 3.06
3762 4736 1.199615 TGCTACGGGAATGGATCACA 58.800 50.000 0.00 0.00 0.00 3.58
3763 4737 1.138859 TGCTACGGGAATGGATCACAG 59.861 52.381 0.00 0.00 0.00 3.66
3764 4738 1.412710 GCTACGGGAATGGATCACAGA 59.587 52.381 0.00 0.00 0.00 3.41
3765 4739 2.037772 GCTACGGGAATGGATCACAGAT 59.962 50.000 0.00 0.00 0.00 2.90
3766 4740 2.918712 ACGGGAATGGATCACAGATC 57.081 50.000 0.00 0.00 0.00 2.75
3767 4741 1.069204 ACGGGAATGGATCACAGATCG 59.931 52.381 0.00 0.00 0.00 3.69
3768 4742 1.069204 CGGGAATGGATCACAGATCGT 59.931 52.381 0.00 0.00 0.00 3.73
3769 4743 2.483714 CGGGAATGGATCACAGATCGTT 60.484 50.000 0.00 0.00 0.00 3.85
3770 4744 3.243737 CGGGAATGGATCACAGATCGTTA 60.244 47.826 0.00 0.00 0.00 3.18
3771 4745 4.561530 CGGGAATGGATCACAGATCGTTAT 60.562 45.833 0.00 0.00 0.00 1.89
3772 4746 4.932200 GGGAATGGATCACAGATCGTTATC 59.068 45.833 0.00 0.00 0.00 1.75
3773 4747 5.511373 GGGAATGGATCACAGATCGTTATCA 60.511 44.000 11.36 0.00 34.28 2.15
3774 4748 5.406780 GGAATGGATCACAGATCGTTATCAC 59.593 44.000 11.36 4.94 34.28 3.06
3775 4749 5.798125 ATGGATCACAGATCGTTATCACT 57.202 39.130 11.36 0.00 34.28 3.41
3776 4750 6.901081 ATGGATCACAGATCGTTATCACTA 57.099 37.500 11.36 2.37 34.28 2.74
3777 4751 6.319141 TGGATCACAGATCGTTATCACTAG 57.681 41.667 11.36 0.00 34.28 2.57
3778 4752 6.062095 TGGATCACAGATCGTTATCACTAGA 58.938 40.000 0.00 0.00 34.28 2.43
3779 4753 6.017026 TGGATCACAGATCGTTATCACTAGAC 60.017 42.308 0.00 0.00 34.28 2.59
3780 4754 5.405331 TCACAGATCGTTATCACTAGACG 57.595 43.478 0.00 0.00 38.09 4.18
3781 4755 3.969352 CACAGATCGTTATCACTAGACGC 59.031 47.826 0.00 0.00 36.77 5.19
3782 4756 3.219189 CAGATCGTTATCACTAGACGCG 58.781 50.000 3.53 3.53 36.77 6.01
3783 4757 1.970608 GATCGTTATCACTAGACGCGC 59.029 52.381 5.73 0.00 36.77 6.86
3784 4758 0.728542 TCGTTATCACTAGACGCGCA 59.271 50.000 5.73 0.00 36.77 6.09
3785 4759 1.113253 CGTTATCACTAGACGCGCAG 58.887 55.000 5.73 3.30 0.00 5.18
3786 4760 1.531264 CGTTATCACTAGACGCGCAGT 60.531 52.381 5.73 6.37 0.00 4.40
3788 4762 0.248498 TATCACTAGACGCGCAGTGC 60.248 55.000 23.69 4.58 45.12 4.40
3789 4763 2.890847 ATCACTAGACGCGCAGTGCC 62.891 60.000 23.69 1.23 45.12 5.01
3790 4764 4.778415 ACTAGACGCGCAGTGCCG 62.778 66.667 19.97 19.97 45.12 5.69
3791 4765 4.778415 CTAGACGCGCAGTGCCGT 62.778 66.667 25.05 25.05 45.12 5.68
3806 4780 4.826600 CGTGCAGCGGAAAAAGAG 57.173 55.556 0.00 0.00 36.85 2.85
3807 4781 1.941812 CGTGCAGCGGAAAAAGAGT 59.058 52.632 0.00 0.00 36.85 3.24
3808 4782 0.307760 CGTGCAGCGGAAAAAGAGTT 59.692 50.000 0.00 0.00 36.85 3.01
3809 4783 1.758783 GTGCAGCGGAAAAAGAGTTG 58.241 50.000 0.00 0.00 0.00 3.16
3810 4784 0.667993 TGCAGCGGAAAAAGAGTTGG 59.332 50.000 0.00 0.00 0.00 3.77
3811 4785 0.039165 GCAGCGGAAAAAGAGTTGGG 60.039 55.000 0.00 0.00 0.00 4.12
3812 4786 0.598065 CAGCGGAAAAAGAGTTGGGG 59.402 55.000 0.00 0.00 0.00 4.96
3813 4787 1.179174 AGCGGAAAAAGAGTTGGGGC 61.179 55.000 0.00 0.00 0.00 5.80
3814 4788 1.460273 GCGGAAAAAGAGTTGGGGCA 61.460 55.000 0.00 0.00 0.00 5.36
3815 4789 0.598065 CGGAAAAAGAGTTGGGGCAG 59.402 55.000 0.00 0.00 0.00 4.85
3816 4790 0.318441 GGAAAAAGAGTTGGGGCAGC 59.682 55.000 0.00 0.00 0.00 5.25
3817 4791 0.039165 GAAAAAGAGTTGGGGCAGCG 60.039 55.000 0.00 0.00 0.00 5.18
3818 4792 2.087462 AAAAAGAGTTGGGGCAGCGC 62.087 55.000 0.00 0.00 0.00 5.92
3840 4814 4.052229 CCGGAGTCGCCTCGTGTT 62.052 66.667 0.00 0.00 38.70 3.32
3841 4815 2.504244 CGGAGTCGCCTCGTGTTC 60.504 66.667 0.00 0.00 38.70 3.18
3842 4816 2.126031 GGAGTCGCCTCGTGTTCC 60.126 66.667 0.00 0.00 38.70 3.62
3843 4817 2.126031 GAGTCGCCTCGTGTTCCC 60.126 66.667 0.00 0.00 0.00 3.97
3844 4818 3.966026 GAGTCGCCTCGTGTTCCCG 62.966 68.421 0.00 0.00 0.00 5.14
3847 4821 4.796231 CGCCTCGTGTTCCCGGAG 62.796 72.222 0.73 0.00 0.00 4.63
3848 4822 3.692406 GCCTCGTGTTCCCGGAGT 61.692 66.667 0.73 0.00 0.00 3.85
3849 4823 2.572284 CCTCGTGTTCCCGGAGTC 59.428 66.667 0.73 0.00 0.00 3.36
3850 4824 2.178521 CTCGTGTTCCCGGAGTCG 59.821 66.667 0.73 0.12 0.00 4.18
3851 4825 2.595463 TCGTGTTCCCGGAGTCGT 60.595 61.111 0.73 0.00 33.95 4.34
3852 4826 2.126580 CGTGTTCCCGGAGTCGTC 60.127 66.667 0.73 0.00 33.95 4.20
3853 4827 2.623915 CGTGTTCCCGGAGTCGTCT 61.624 63.158 0.73 0.00 33.95 4.18
3854 4828 1.212229 GTGTTCCCGGAGTCGTCTC 59.788 63.158 0.73 0.60 39.76 3.36
3863 4837 1.513622 GAGTCGTCTCCTCCTTGCC 59.486 63.158 0.00 0.00 34.87 4.52
3864 4838 2.182030 GTCGTCTCCTCCTTGCCG 59.818 66.667 0.00 0.00 0.00 5.69
3865 4839 3.068691 TCGTCTCCTCCTTGCCGG 61.069 66.667 0.00 0.00 0.00 6.13
3866 4840 3.382832 CGTCTCCTCCTTGCCGGT 61.383 66.667 1.90 0.00 0.00 5.28
3867 4841 2.579738 GTCTCCTCCTTGCCGGTC 59.420 66.667 1.90 0.00 0.00 4.79
3868 4842 1.985116 GTCTCCTCCTTGCCGGTCT 60.985 63.158 1.90 0.00 0.00 3.85
3869 4843 1.682684 TCTCCTCCTTGCCGGTCTC 60.683 63.158 1.90 0.00 0.00 3.36
3870 4844 2.683933 TCCTCCTTGCCGGTCTCC 60.684 66.667 1.90 0.00 0.00 3.71
3871 4845 3.787001 CCTCCTTGCCGGTCTCCC 61.787 72.222 1.90 0.00 0.00 4.30
3872 4846 3.003173 CTCCTTGCCGGTCTCCCA 61.003 66.667 1.90 0.00 0.00 4.37
3873 4847 3.316573 CTCCTTGCCGGTCTCCCAC 62.317 68.421 1.90 0.00 0.00 4.61
3874 4848 4.760047 CCTTGCCGGTCTCCCACG 62.760 72.222 1.90 0.00 0.00 4.94
3875 4849 4.003788 CTTGCCGGTCTCCCACGT 62.004 66.667 1.90 0.00 0.00 4.49
3876 4850 2.601067 TTGCCGGTCTCCCACGTA 60.601 61.111 1.90 0.00 0.00 3.57
3877 4851 1.956629 CTTGCCGGTCTCCCACGTAT 61.957 60.000 1.90 0.00 0.00 3.06
3878 4852 1.952102 TTGCCGGTCTCCCACGTATC 61.952 60.000 1.90 0.00 0.00 2.24
3879 4853 2.719979 CCGGTCTCCCACGTATCG 59.280 66.667 0.00 0.00 0.00 2.92
3880 4854 1.820906 CCGGTCTCCCACGTATCGA 60.821 63.158 0.00 0.00 0.00 3.59
3881 4855 1.170919 CCGGTCTCCCACGTATCGAT 61.171 60.000 2.16 2.16 0.00 3.59
3882 4856 0.237761 CGGTCTCCCACGTATCGATC 59.762 60.000 0.00 0.00 0.00 3.69
3883 4857 0.237761 GGTCTCCCACGTATCGATCG 59.762 60.000 9.36 9.36 0.00 3.69
3884 4858 0.237761 GTCTCCCACGTATCGATCGG 59.762 60.000 16.41 0.89 0.00 4.18
3885 4859 0.107268 TCTCCCACGTATCGATCGGA 59.893 55.000 16.41 2.25 0.00 4.55
3886 4860 1.166129 CTCCCACGTATCGATCGGAT 58.834 55.000 16.41 9.99 39.25 4.18
3887 4861 1.130749 CTCCCACGTATCGATCGGATC 59.869 57.143 16.41 7.95 36.55 3.36
3888 4862 0.170561 CCCACGTATCGATCGGATCC 59.829 60.000 16.41 0.00 36.55 3.36
3889 4863 0.170561 CCACGTATCGATCGGATCCC 59.829 60.000 16.41 0.00 36.55 3.85
3899 4873 4.143333 CGGATCCCGCGAACAGGT 62.143 66.667 8.23 0.00 41.17 4.00
3900 4874 2.267961 GGATCCCGCGAACAGGTT 59.732 61.111 8.23 0.00 0.00 3.50
3901 4875 1.814169 GGATCCCGCGAACAGGTTC 60.814 63.158 8.23 4.56 36.29 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 20 2.125106 GTGGATGAGGTGACCCGC 60.125 66.667 0.00 0.00 35.12 6.13
70 83 4.811063 GCCAGCTATAAATAAAGGGGAGGG 60.811 50.000 0.00 0.00 0.00 4.30
71 84 4.336280 GCCAGCTATAAATAAAGGGGAGG 58.664 47.826 0.00 0.00 0.00 4.30
72 85 4.336280 GGCCAGCTATAAATAAAGGGGAG 58.664 47.826 0.00 0.00 0.00 4.30
73 86 3.075432 GGGCCAGCTATAAATAAAGGGGA 59.925 47.826 4.39 0.00 0.00 4.81
74 87 3.431415 GGGCCAGCTATAAATAAAGGGG 58.569 50.000 4.39 0.00 0.00 4.79
96 114 1.861575 GGCGAGAATAAAGCGAAGAGG 59.138 52.381 0.00 0.00 0.00 3.69
139 157 2.034221 GTGGGGAAGTGGAGGTGC 59.966 66.667 0.00 0.00 0.00 5.01
152 170 2.040278 AGGAGGAGGAGCAGTGGG 59.960 66.667 0.00 0.00 0.00 4.61
189 215 0.737019 GTGAGTGCTCTCTGCTCTGC 60.737 60.000 16.23 0.00 44.42 4.26
279 317 6.204108 TGGTTTCCGACAGAAATCTAAGAAAC 59.796 38.462 13.12 13.12 45.99 2.78
294 332 3.698040 TCCTACATAGACTGGTTTCCGAC 59.302 47.826 0.00 0.00 0.00 4.79
311 350 3.376540 GACAAGAGATCATGCGTCCTAC 58.623 50.000 0.00 0.00 0.00 3.18
315 354 2.200067 CAGGACAAGAGATCATGCGTC 58.800 52.381 0.00 0.00 0.00 5.19
321 360 2.700371 ACACACACAGGACAAGAGATCA 59.300 45.455 0.00 0.00 0.00 2.92
328 367 1.271108 ACACACACACACACAGGACAA 60.271 47.619 0.00 0.00 0.00 3.18
334 373 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
338 377 2.675348 CACATACACACACACACACACA 59.325 45.455 0.00 0.00 0.00 3.72
342 381 2.675348 CACACACATACACACACACACA 59.325 45.455 0.00 0.00 0.00 3.72
346 385 2.979240 ACACACACACATACACACACA 58.021 42.857 0.00 0.00 0.00 3.72
350 389 3.625313 CCAAGAACACACACACATACACA 59.375 43.478 0.00 0.00 0.00 3.72
354 393 1.870402 CGCCAAGAACACACACACATA 59.130 47.619 0.00 0.00 0.00 2.29
355 394 0.662619 CGCCAAGAACACACACACAT 59.337 50.000 0.00 0.00 0.00 3.21
356 395 1.987704 GCGCCAAGAACACACACACA 61.988 55.000 0.00 0.00 0.00 3.72
357 396 1.298339 GCGCCAAGAACACACACAC 60.298 57.895 0.00 0.00 0.00 3.82
358 397 2.477176 GGCGCCAAGAACACACACA 61.477 57.895 24.80 0.00 0.00 3.72
359 398 2.331451 GGCGCCAAGAACACACAC 59.669 61.111 24.80 0.00 0.00 3.82
360 399 2.124529 TGGCGCCAAGAACACACA 60.125 55.556 30.74 0.00 0.00 3.72
361 400 1.724582 AAGTGGCGCCAAGAACACAC 61.725 55.000 34.66 16.62 36.35 3.82
362 401 1.444119 GAAGTGGCGCCAAGAACACA 61.444 55.000 34.66 1.55 36.35 3.72
386 425 3.425758 GGAAAAATCCGTCACGAATCCAC 60.426 47.826 0.00 0.00 0.00 4.02
387 426 2.745281 GGAAAAATCCGTCACGAATCCA 59.255 45.455 0.00 0.00 0.00 3.41
392 431 2.257691 TTGGGAAAAATCCGTCACGA 57.742 45.000 0.00 0.00 0.00 4.35
424 472 6.098838 TCTCATGGTCTGTTCTACATATGCTT 59.901 38.462 1.58 0.00 0.00 3.91
430 478 7.066142 ACTAGATCTCATGGTCTGTTCTACAT 58.934 38.462 0.00 0.00 0.00 2.29
442 490 7.338196 ACATCCGAACTATACTAGATCTCATGG 59.662 40.741 0.00 0.00 0.00 3.66
444 492 7.885922 ACACATCCGAACTATACTAGATCTCAT 59.114 37.037 0.00 0.00 0.00 2.90
456 519 6.325545 TGATAAACCCTACACATCCGAACTAT 59.674 38.462 0.00 0.00 0.00 2.12
458 521 4.468510 TGATAAACCCTACACATCCGAACT 59.531 41.667 0.00 0.00 0.00 3.01
460 523 5.607477 GATGATAAACCCTACACATCCGAA 58.393 41.667 0.00 0.00 0.00 4.30
462 525 3.987868 CGATGATAAACCCTACACATCCG 59.012 47.826 0.00 0.00 33.11 4.18
463 526 4.315803 CCGATGATAAACCCTACACATCC 58.684 47.826 0.00 0.00 33.11 3.51
465 528 3.135712 TGCCGATGATAAACCCTACACAT 59.864 43.478 0.00 0.00 0.00 3.21
466 529 2.502130 TGCCGATGATAAACCCTACACA 59.498 45.455 0.00 0.00 0.00 3.72
467 530 3.188159 TGCCGATGATAAACCCTACAC 57.812 47.619 0.00 0.00 0.00 2.90
468 531 3.135712 ACATGCCGATGATAAACCCTACA 59.864 43.478 0.00 0.00 33.36 2.74
469 532 3.498397 CACATGCCGATGATAAACCCTAC 59.502 47.826 0.00 0.00 33.36 3.18
470 533 3.135712 ACACATGCCGATGATAAACCCTA 59.864 43.478 0.00 0.00 33.36 3.53
471 534 2.092429 ACACATGCCGATGATAAACCCT 60.092 45.455 0.00 0.00 33.36 4.34
472 535 2.033299 CACACATGCCGATGATAAACCC 59.967 50.000 0.00 0.00 33.36 4.11
473 536 2.033299 CCACACATGCCGATGATAAACC 59.967 50.000 0.00 0.00 33.36 3.27
474 537 2.033299 CCCACACATGCCGATGATAAAC 59.967 50.000 0.00 0.00 33.36 2.01
475 538 2.092699 TCCCACACATGCCGATGATAAA 60.093 45.455 0.00 0.00 33.36 1.40
476 539 1.488393 TCCCACACATGCCGATGATAA 59.512 47.619 0.00 0.00 33.36 1.75
477 540 1.127343 TCCCACACATGCCGATGATA 58.873 50.000 0.00 0.00 33.36 2.15
478 541 0.464373 GTCCCACACATGCCGATGAT 60.464 55.000 0.00 0.00 33.36 2.45
479 542 1.078497 GTCCCACACATGCCGATGA 60.078 57.895 0.00 0.00 33.36 2.92
480 543 2.463620 CGTCCCACACATGCCGATG 61.464 63.158 0.00 0.00 35.49 3.84
481 544 2.125147 CGTCCCACACATGCCGAT 60.125 61.111 0.00 0.00 0.00 4.18
482 545 3.295304 CTCGTCCCACACATGCCGA 62.295 63.158 0.00 0.00 0.00 5.54
483 546 2.815211 CTCGTCCCACACATGCCG 60.815 66.667 0.00 0.00 0.00 5.69
484 547 2.436646 CCTCGTCCCACACATGCC 60.437 66.667 0.00 0.00 0.00 4.40
485 548 2.257409 ATCCCTCGTCCCACACATGC 62.257 60.000 0.00 0.00 0.00 4.06
486 549 0.462581 CATCCCTCGTCCCACACATG 60.463 60.000 0.00 0.00 0.00 3.21
487 550 0.909610 ACATCCCTCGTCCCACACAT 60.910 55.000 0.00 0.00 0.00 3.21
488 551 1.125093 AACATCCCTCGTCCCACACA 61.125 55.000 0.00 0.00 0.00 3.72
489 552 0.899720 TAACATCCCTCGTCCCACAC 59.100 55.000 0.00 0.00 0.00 3.82
490 553 1.646912 TTAACATCCCTCGTCCCACA 58.353 50.000 0.00 0.00 0.00 4.17
491 554 3.277142 AATTAACATCCCTCGTCCCAC 57.723 47.619 0.00 0.00 0.00 4.61
492 555 4.013728 CAAAATTAACATCCCTCGTCCCA 58.986 43.478 0.00 0.00 0.00 4.37
493 556 4.014406 ACAAAATTAACATCCCTCGTCCC 58.986 43.478 0.00 0.00 0.00 4.46
494 557 4.941873 AGACAAAATTAACATCCCTCGTCC 59.058 41.667 0.00 0.00 0.00 4.79
495 558 5.220416 CGAGACAAAATTAACATCCCTCGTC 60.220 44.000 0.00 0.00 37.02 4.20
496 559 4.630069 CGAGACAAAATTAACATCCCTCGT 59.370 41.667 0.00 0.00 37.02 4.18
497 560 4.494199 GCGAGACAAAATTAACATCCCTCG 60.494 45.833 0.00 0.00 42.41 4.63
498 561 4.636206 AGCGAGACAAAATTAACATCCCTC 59.364 41.667 0.00 0.00 0.00 4.30
503 566 5.957842 TCCAAGCGAGACAAAATTAACAT 57.042 34.783 0.00 0.00 0.00 2.71
508 571 4.853924 ACAATCCAAGCGAGACAAAATT 57.146 36.364 0.00 0.00 0.00 1.82
511 574 3.795150 GCAAACAATCCAAGCGAGACAAA 60.795 43.478 0.00 0.00 0.00 2.83
626 714 2.352503 ACACAAAAGCGGATGCATTC 57.647 45.000 0.00 0.00 46.23 2.67
627 715 2.676076 GAACACAAAAGCGGATGCATT 58.324 42.857 0.00 0.00 46.23 3.56
628 716 1.401409 CGAACACAAAAGCGGATGCAT 60.401 47.619 0.00 0.00 46.23 3.96
630 718 1.337110 GCGAACACAAAAGCGGATGC 61.337 55.000 0.00 0.00 43.24 3.91
632 720 1.579429 GGCGAACACAAAAGCGGAT 59.421 52.632 0.00 0.00 0.00 4.18
633 721 2.887889 CGGCGAACACAAAAGCGGA 61.888 57.895 0.00 0.00 32.72 5.54
637 725 2.050442 GGGCGGCGAACACAAAAG 60.050 61.111 12.98 0.00 0.00 2.27
648 737 1.459450 TGAGTCTAATTTTGGGCGGC 58.541 50.000 0.00 0.00 0.00 6.53
652 741 5.414454 TGGACGAAATGAGTCTAATTTTGGG 59.586 40.000 12.82 2.68 38.58 4.12
659 748 4.594123 TGTGTGGACGAAATGAGTCTAA 57.406 40.909 0.00 0.00 38.58 2.10
662 751 2.480419 CCTTGTGTGGACGAAATGAGTC 59.520 50.000 0.00 0.00 37.86 3.36
703 795 4.240881 AGGCAGGATCAATTAGCAGAAA 57.759 40.909 0.00 0.00 0.00 2.52
704 796 3.939740 AGGCAGGATCAATTAGCAGAA 57.060 42.857 0.00 0.00 0.00 3.02
705 797 3.457380 AGAAGGCAGGATCAATTAGCAGA 59.543 43.478 0.00 0.00 0.00 4.26
749 841 4.318050 GCAAAATCCGAGCAACAAAAGAAC 60.318 41.667 0.00 0.00 0.00 3.01
836 929 1.767681 AGGAGTGATCCTGCTGGAATC 59.232 52.381 17.04 14.05 46.80 2.52
837 930 1.767681 GAGGAGTGATCCTGCTGGAAT 59.232 52.381 17.04 5.41 46.80 3.01
838 931 1.198713 GAGGAGTGATCCTGCTGGAA 58.801 55.000 17.04 0.00 46.80 3.53
839 932 0.689080 GGAGGAGTGATCCTGCTGGA 60.689 60.000 15.40 15.40 42.70 3.86
840 933 1.828768 GGAGGAGTGATCCTGCTGG 59.171 63.158 8.40 2.58 42.70 4.85
845 938 2.966516 GGTTAATCGGAGGAGTGATCCT 59.033 50.000 0.00 0.00 44.06 3.24
886 997 4.527427 GGGGAAAGAACAGTACACTAGAGT 59.473 45.833 0.00 0.00 0.00 3.24
892 1003 3.579151 AGAGAGGGGAAAGAACAGTACAC 59.421 47.826 0.00 0.00 0.00 2.90
914 1025 0.670546 GAACCTGTCGCAGCAGCTAA 60.671 55.000 0.00 0.00 39.10 3.09
923 1034 2.688507 TGAAGATCAAGAACCTGTCGC 58.311 47.619 0.00 0.00 0.00 5.19
924 1035 4.752101 ACTTTGAAGATCAAGAACCTGTCG 59.248 41.667 0.00 0.00 37.70 4.35
925 1036 5.561725 GCACTTTGAAGATCAAGAACCTGTC 60.562 44.000 0.00 0.00 37.70 3.51
943 1054 4.559862 ACTACTGGCTATTCTGCACTTT 57.440 40.909 0.00 0.00 34.04 2.66
953 1067 6.238786 CGACACAGAATTCTACTACTGGCTAT 60.239 42.308 7.86 0.00 35.08 2.97
958 1072 4.106197 GCCGACACAGAATTCTACTACTG 58.894 47.826 7.86 0.00 36.58 2.74
977 1095 3.526931 TGGAATTCTCTTGTCTAGCCG 57.473 47.619 5.23 0.00 0.00 5.52
1548 1671 1.227973 GATCATGGCCGGGAAGACC 60.228 63.158 2.18 0.00 0.00 3.85
1719 1872 1.215647 GGAGACGTGCGACATCCTT 59.784 57.895 0.00 0.00 0.00 3.36
1911 2091 3.450115 GGGACCGTGGAGACCTCG 61.450 72.222 0.00 0.00 39.77 4.63
2252 2447 9.578576 CATGGAAGAAAGAAAATCATATAGGGA 57.421 33.333 0.00 0.00 0.00 4.20
2253 2448 9.578576 TCATGGAAGAAAGAAAATCATATAGGG 57.421 33.333 0.00 0.00 0.00 3.53
2259 2454 9.431887 CATTGTTCATGGAAGAAAGAAAATCAT 57.568 29.630 0.00 0.00 29.11 2.45
2260 2455 8.640651 TCATTGTTCATGGAAGAAAGAAAATCA 58.359 29.630 0.00 0.00 33.07 2.57
2261 2456 9.136952 CTCATTGTTCATGGAAGAAAGAAAATC 57.863 33.333 0.00 0.00 33.07 2.17
2262 2457 7.601508 GCTCATTGTTCATGGAAGAAAGAAAAT 59.398 33.333 0.00 0.00 33.07 1.82
2263 2458 6.925165 GCTCATTGTTCATGGAAGAAAGAAAA 59.075 34.615 0.00 0.00 33.07 2.29
2264 2459 6.040729 TGCTCATTGTTCATGGAAGAAAGAAA 59.959 34.615 0.00 0.00 33.07 2.52
2265 2460 5.535783 TGCTCATTGTTCATGGAAGAAAGAA 59.464 36.000 0.00 0.00 33.07 2.52
2266 2461 5.072055 TGCTCATTGTTCATGGAAGAAAGA 58.928 37.500 0.00 0.00 33.07 2.52
2267 2462 5.381174 TGCTCATTGTTCATGGAAGAAAG 57.619 39.130 0.00 0.00 33.07 2.62
2268 2463 5.988310 ATGCTCATTGTTCATGGAAGAAA 57.012 34.783 0.00 0.00 33.07 2.52
2269 2464 8.929260 ATATATGCTCATTGTTCATGGAAGAA 57.071 30.769 0.00 0.00 33.07 2.52
2270 2465 8.929260 AATATATGCTCATTGTTCATGGAAGA 57.071 30.769 0.00 0.00 33.07 2.87
2278 2473 9.655769 CGCCATATAAATATATGCTCATTGTTC 57.344 33.333 12.85 0.00 42.53 3.18
2279 2474 9.177608 ACGCCATATAAATATATGCTCATTGTT 57.822 29.630 12.85 0.00 42.53 2.83
2280 2475 8.737168 ACGCCATATAAATATATGCTCATTGT 57.263 30.769 12.85 4.40 42.53 2.71
2281 2476 8.285394 GGACGCCATATAAATATATGCTCATTG 58.715 37.037 12.85 2.80 42.53 2.82
2282 2477 8.213679 AGGACGCCATATAAATATATGCTCATT 58.786 33.333 12.85 0.00 42.53 2.57
2283 2478 7.739825 AGGACGCCATATAAATATATGCTCAT 58.260 34.615 12.85 4.58 42.53 2.90
2284 2479 7.124573 AGGACGCCATATAAATATATGCTCA 57.875 36.000 12.85 0.00 42.53 4.26
2285 2480 8.361139 AGTAGGACGCCATATAAATATATGCTC 58.639 37.037 12.85 7.97 42.53 4.26
2286 2481 8.251383 AGTAGGACGCCATATAAATATATGCT 57.749 34.615 12.85 8.12 42.53 3.79
2287 2482 7.326305 CGAGTAGGACGCCATATAAATATATGC 59.674 40.741 12.85 8.79 42.53 3.14
2288 2483 8.565416 TCGAGTAGGACGCCATATAAATATATG 58.435 37.037 11.76 11.76 43.16 1.78
2289 2484 8.687292 TCGAGTAGGACGCCATATAAATATAT 57.313 34.615 0.00 0.00 0.00 0.86
2290 2485 8.687292 ATCGAGTAGGACGCCATATAAATATA 57.313 34.615 0.00 0.00 0.00 0.86
2291 2486 7.520131 CGATCGAGTAGGACGCCATATAAATAT 60.520 40.741 10.26 0.00 0.00 1.28
2292 2487 6.238293 CGATCGAGTAGGACGCCATATAAATA 60.238 42.308 10.26 0.00 0.00 1.40
2293 2488 5.448768 CGATCGAGTAGGACGCCATATAAAT 60.449 44.000 10.26 0.00 0.00 1.40
2294 2489 4.142752 CGATCGAGTAGGACGCCATATAAA 60.143 45.833 10.26 0.00 0.00 1.40
2295 2490 3.373130 CGATCGAGTAGGACGCCATATAA 59.627 47.826 10.26 0.00 0.00 0.98
2296 2491 2.934553 CGATCGAGTAGGACGCCATATA 59.065 50.000 10.26 0.00 0.00 0.86
2297 2492 1.738350 CGATCGAGTAGGACGCCATAT 59.262 52.381 10.26 0.00 0.00 1.78
2298 2493 1.154197 CGATCGAGTAGGACGCCATA 58.846 55.000 10.26 0.00 0.00 2.74
2299 2494 0.818445 ACGATCGAGTAGGACGCCAT 60.818 55.000 24.34 0.00 0.00 4.40
2300 2495 1.028330 AACGATCGAGTAGGACGCCA 61.028 55.000 24.34 0.00 0.00 5.69
2301 2496 0.591741 CAACGATCGAGTAGGACGCC 60.592 60.000 24.34 0.00 0.00 5.68
2302 2497 1.201098 GCAACGATCGAGTAGGACGC 61.201 60.000 24.34 7.95 0.00 5.19
2303 2498 0.377554 AGCAACGATCGAGTAGGACG 59.622 55.000 24.34 1.60 0.00 4.79
2304 2499 1.400846 TCAGCAACGATCGAGTAGGAC 59.599 52.381 24.34 3.64 0.00 3.85
2305 2500 1.746470 TCAGCAACGATCGAGTAGGA 58.254 50.000 24.34 10.55 0.00 2.94
2306 2501 2.292016 AGATCAGCAACGATCGAGTAGG 59.708 50.000 24.34 8.25 45.39 3.18
2307 2502 3.617540 AGATCAGCAACGATCGAGTAG 57.382 47.619 24.34 9.16 45.39 2.57
2308 2503 4.733972 CTAGATCAGCAACGATCGAGTA 57.266 45.455 24.34 0.92 45.39 2.59
2309 2504 3.617540 CTAGATCAGCAACGATCGAGT 57.382 47.619 24.34 6.14 45.39 4.18
2321 2516 4.004196 TCATTCATGGCAGCTAGATCAG 57.996 45.455 0.00 0.00 0.00 2.90
2322 2517 4.132336 GTTCATTCATGGCAGCTAGATCA 58.868 43.478 0.00 0.00 0.00 2.92
2323 2518 4.387598 AGTTCATTCATGGCAGCTAGATC 58.612 43.478 0.00 0.00 0.00 2.75
2324 2519 4.387598 GAGTTCATTCATGGCAGCTAGAT 58.612 43.478 0.00 0.00 0.00 1.98
2325 2520 3.739209 CGAGTTCATTCATGGCAGCTAGA 60.739 47.826 0.00 0.00 0.00 2.43
2326 2521 2.543012 CGAGTTCATTCATGGCAGCTAG 59.457 50.000 0.00 0.00 0.00 3.42
2327 2522 2.554142 CGAGTTCATTCATGGCAGCTA 58.446 47.619 0.00 0.00 0.00 3.32
2328 2523 1.376543 CGAGTTCATTCATGGCAGCT 58.623 50.000 0.00 0.00 0.00 4.24
2329 2524 0.379669 CCGAGTTCATTCATGGCAGC 59.620 55.000 0.00 0.00 0.00 5.25
2330 2525 0.379669 GCCGAGTTCATTCATGGCAG 59.620 55.000 0.00 0.00 42.03 4.85
2331 2526 2.481212 GCCGAGTTCATTCATGGCA 58.519 52.632 0.00 0.00 42.03 4.92
2332 2527 1.027357 ATGCCGAGTTCATTCATGGC 58.973 50.000 0.00 0.00 42.76 4.40
2333 2528 2.223641 CCAATGCCGAGTTCATTCATGG 60.224 50.000 0.00 0.00 32.30 3.66
2334 2529 2.797087 GCCAATGCCGAGTTCATTCATG 60.797 50.000 0.00 0.00 32.30 3.07
2335 2530 1.406539 GCCAATGCCGAGTTCATTCAT 59.593 47.619 0.00 0.00 32.30 2.57
2336 2531 0.810648 GCCAATGCCGAGTTCATTCA 59.189 50.000 0.00 0.00 32.30 2.57
2337 2532 0.810648 TGCCAATGCCGAGTTCATTC 59.189 50.000 0.00 0.00 36.33 2.67
2338 2533 0.813184 CTGCCAATGCCGAGTTCATT 59.187 50.000 0.00 0.00 36.33 2.57
2339 2534 1.033746 CCTGCCAATGCCGAGTTCAT 61.034 55.000 0.00 0.00 36.33 2.57
2340 2535 1.675310 CCTGCCAATGCCGAGTTCA 60.675 57.895 0.00 0.00 36.33 3.18
2341 2536 1.675641 ACCTGCCAATGCCGAGTTC 60.676 57.895 0.00 0.00 36.33 3.01
2342 2537 1.973281 CACCTGCCAATGCCGAGTT 60.973 57.895 0.00 0.00 36.33 3.01
2343 2538 2.360350 CACCTGCCAATGCCGAGT 60.360 61.111 0.00 0.00 36.33 4.18
2344 2539 2.360350 ACACCTGCCAATGCCGAG 60.360 61.111 0.00 0.00 36.33 4.63
2345 2540 2.359850 GACACCTGCCAATGCCGA 60.360 61.111 0.00 0.00 36.33 5.54
2346 2541 2.535485 TAGGACACCTGCCAATGCCG 62.535 60.000 0.00 0.00 34.61 5.69
2347 2542 1.032114 GTAGGACACCTGCCAATGCC 61.032 60.000 0.00 0.00 34.61 4.40
2348 2543 0.035056 AGTAGGACACCTGCCAATGC 60.035 55.000 0.00 0.00 36.92 3.56
2349 2544 1.740380 CGAGTAGGACACCTGCCAATG 60.740 57.143 0.00 0.00 36.92 2.82
2350 2545 0.537188 CGAGTAGGACACCTGCCAAT 59.463 55.000 0.00 0.00 36.92 3.16
2351 2546 1.972198 CGAGTAGGACACCTGCCAA 59.028 57.895 0.00 0.00 36.92 4.52
2352 2547 2.646175 GCGAGTAGGACACCTGCCA 61.646 63.158 0.00 0.00 36.92 4.92
2353 2548 2.184579 GCGAGTAGGACACCTGCC 59.815 66.667 0.00 0.00 36.92 4.85
2354 2549 1.153745 CAGCGAGTAGGACACCTGC 60.154 63.158 0.00 0.00 36.48 4.85
2355 2550 1.153745 GCAGCGAGTAGGACACCTG 60.154 63.158 0.00 0.00 34.61 4.00
2513 2816 1.337071 GATGCGACGTTGGAGAGGATA 59.663 52.381 4.64 0.00 0.00 2.59
2555 3095 6.300354 ACCAAAAGTTCAGAAGTATTGTCG 57.700 37.500 0.00 0.00 0.00 4.35
2577 3118 1.145803 GTTGCCAGGAGTACGTGAAC 58.854 55.000 0.00 0.00 34.32 3.18
2579 3120 0.317160 CAGTTGCCAGGAGTACGTGA 59.683 55.000 0.00 0.00 34.32 4.35
2580 3121 1.291877 GCAGTTGCCAGGAGTACGTG 61.292 60.000 0.00 0.00 34.31 4.49
2603 3147 5.450412 CCAAAAGTTCTTTAGAGCACTGCAA 60.450 40.000 3.30 0.00 29.53 4.08
2618 3166 4.450082 ACTGAAACACCACCAAAAGTTC 57.550 40.909 0.00 0.00 0.00 3.01
2621 3169 4.423732 CAGAACTGAAACACCACCAAAAG 58.576 43.478 0.00 0.00 0.00 2.27
2667 3534 4.873129 GAGATCGCCGCCGCAGAA 62.873 66.667 0.00 0.00 34.03 3.02
2802 3669 1.692519 AGGTTGTAGCCGAAGAACTGT 59.307 47.619 0.00 0.00 0.00 3.55
2913 3785 9.570488 GTAGTACTACTATGTTCAGTTTCTTGG 57.430 37.037 23.17 0.00 32.65 3.61
2991 3874 3.003378 GGGCAAGCCTATCGATTTTACAC 59.997 47.826 11.40 0.00 36.10 2.90
3011 3894 2.194201 AACACAATCGGGTTACAGGG 57.806 50.000 0.00 0.00 0.00 4.45
3013 3896 4.201970 ACACAAAACACAATCGGGTTACAG 60.202 41.667 0.00 0.00 0.00 2.74
3040 3923 5.247110 ACAGAAGATGACACCACTGATTACT 59.753 40.000 0.00 0.00 0.00 2.24
3041 3924 5.482908 ACAGAAGATGACACCACTGATTAC 58.517 41.667 0.00 0.00 0.00 1.89
3042 3925 5.745312 ACAGAAGATGACACCACTGATTA 57.255 39.130 0.00 0.00 0.00 1.75
3051 3939 2.408050 AGCGACAACAGAAGATGACAC 58.592 47.619 0.00 0.00 0.00 3.67
3092 3980 2.107041 TACTTGGTCTGCCACCCGTG 62.107 60.000 0.00 0.00 46.18 4.94
3118 4006 7.830099 ACTCCAAGTTGAGAAATCTGAAAAT 57.170 32.000 3.87 0.00 36.22 1.82
3143 4036 4.080695 TCAACAAGAATCTATCTGCAGGCT 60.081 41.667 15.13 4.32 38.79 4.58
3144 4037 4.194640 TCAACAAGAATCTATCTGCAGGC 58.805 43.478 15.13 0.00 38.79 4.85
3145 4038 5.879223 AGTTCAACAAGAATCTATCTGCAGG 59.121 40.000 15.13 0.00 38.79 4.85
3146 4039 6.981762 AGTTCAACAAGAATCTATCTGCAG 57.018 37.500 7.63 7.63 38.79 4.41
3299 4265 8.424918 AGCACTATTATTATCTTACACAGCAGT 58.575 33.333 0.00 0.00 0.00 4.40
3335 4303 6.371548 CGACCTGATCAATCTTTTCCAACTTA 59.628 38.462 0.00 0.00 0.00 2.24
3359 4329 1.079543 AGAACTAGCAGCAGCACCG 60.080 57.895 3.17 0.00 45.49 4.94
3361 4331 0.795085 CACAGAACTAGCAGCAGCAC 59.205 55.000 3.17 0.00 45.49 4.40
3375 4345 4.105697 ACCAAAGAATTTAGGACCCACAGA 59.894 41.667 0.00 0.00 35.03 3.41
3376 4346 4.218417 CACCAAAGAATTTAGGACCCACAG 59.782 45.833 0.00 0.00 35.03 3.66
3405 4375 0.109319 GGTTGGCCACAATTGTAGCG 60.109 55.000 20.31 8.64 39.13 4.26
3409 4379 2.439837 CCAGGTTGGCCACAATTGT 58.560 52.632 3.88 4.92 39.13 2.71
3450 4423 5.157067 GCAAATGAAGCAGACTTTAGGAAC 58.843 41.667 0.00 0.00 35.82 3.62
3475 4448 2.364324 TCGATATGGTGGCCAGTAGTTC 59.636 50.000 5.11 0.00 36.75 3.01
3479 4452 2.325484 ACATCGATATGGTGGCCAGTA 58.675 47.619 5.11 0.00 36.75 2.74
3480 4453 1.131638 ACATCGATATGGTGGCCAGT 58.868 50.000 5.11 0.00 36.75 4.00
3483 4456 1.001378 GCAAACATCGATATGGTGGCC 60.001 52.381 0.00 0.00 43.08 5.36
3510 4483 0.951558 GTGGGCATTGGCTTATACCG 59.048 55.000 10.31 0.00 40.87 4.02
3525 4498 1.599047 CCCAGTACTGAGCAGTGGG 59.401 63.158 24.68 11.12 42.52 4.61
3562 4536 4.103153 CCACCTCAATATGGAAGAAGCCTA 59.897 45.833 0.00 0.00 38.34 3.93
3584 4558 4.453819 CAGTCACTTTCATCCTTGTCTTCC 59.546 45.833 0.00 0.00 0.00 3.46
3594 4568 5.559035 CGAAGTTTGACCAGTCACTTTCATC 60.559 44.000 0.00 0.00 39.66 2.92
3610 4584 0.667184 GCCCACATTGCCGAAGTTTG 60.667 55.000 0.00 0.00 0.00 2.93
3611 4585 1.112315 TGCCCACATTGCCGAAGTTT 61.112 50.000 0.00 0.00 0.00 2.66
3632 4606 4.763793 CCTCTTCACTGATCCACAACAAAT 59.236 41.667 0.00 0.00 0.00 2.32
3636 4610 2.616510 CCCCTCTTCACTGATCCACAAC 60.617 54.545 0.00 0.00 0.00 3.32
3639 4613 0.107459 GCCCCTCTTCACTGATCCAC 60.107 60.000 0.00 0.00 0.00 4.02
3640 4614 0.252881 AGCCCCTCTTCACTGATCCA 60.253 55.000 0.00 0.00 0.00 3.41
3641 4615 0.179936 CAGCCCCTCTTCACTGATCC 59.820 60.000 0.00 0.00 31.67 3.36
3642 4616 0.463474 GCAGCCCCTCTTCACTGATC 60.463 60.000 0.00 0.00 31.67 2.92
3643 4617 1.203441 TGCAGCCCCTCTTCACTGAT 61.203 55.000 0.00 0.00 31.67 2.90
3644 4618 1.834856 CTGCAGCCCCTCTTCACTGA 61.835 60.000 0.00 0.00 31.67 3.41
3645 4619 1.376942 CTGCAGCCCCTCTTCACTG 60.377 63.158 0.00 0.00 0.00 3.66
3646 4620 1.130054 TTCTGCAGCCCCTCTTCACT 61.130 55.000 9.47 0.00 0.00 3.41
3647 4621 0.250901 TTTCTGCAGCCCCTCTTCAC 60.251 55.000 9.47 0.00 0.00 3.18
3648 4622 0.700564 ATTTCTGCAGCCCCTCTTCA 59.299 50.000 9.47 0.00 0.00 3.02
3649 4623 1.101331 CATTTCTGCAGCCCCTCTTC 58.899 55.000 9.47 0.00 0.00 2.87
3650 4624 3.277962 CATTTCTGCAGCCCCTCTT 57.722 52.632 9.47 0.00 0.00 2.85
3661 4635 6.076981 AGAACCTAACACAAAGCATTTCTG 57.923 37.500 0.00 0.00 35.03 3.02
3662 4636 6.073222 CGTAGAACCTAACACAAAGCATTTCT 60.073 38.462 0.00 0.00 35.03 2.52
3663 4637 6.077838 CGTAGAACCTAACACAAAGCATTTC 58.922 40.000 0.00 0.00 35.03 2.17
3664 4638 5.048991 CCGTAGAACCTAACACAAAGCATTT 60.049 40.000 0.00 0.00 40.26 2.32
3665 4639 4.454504 CCGTAGAACCTAACACAAAGCATT 59.545 41.667 0.00 0.00 0.00 3.56
3666 4640 4.000988 CCGTAGAACCTAACACAAAGCAT 58.999 43.478 0.00 0.00 0.00 3.79
3667 4641 3.181463 ACCGTAGAACCTAACACAAAGCA 60.181 43.478 0.00 0.00 0.00 3.91
3668 4642 3.396560 ACCGTAGAACCTAACACAAAGC 58.603 45.455 0.00 0.00 0.00 3.51
3669 4643 5.047802 TCCTACCGTAGAACCTAACACAAAG 60.048 44.000 7.16 0.00 0.00 2.77
3670 4644 4.832266 TCCTACCGTAGAACCTAACACAAA 59.168 41.667 7.16 0.00 0.00 2.83
3671 4645 4.406456 TCCTACCGTAGAACCTAACACAA 58.594 43.478 7.16 0.00 0.00 3.33
3672 4646 4.032960 TCCTACCGTAGAACCTAACACA 57.967 45.455 7.16 0.00 0.00 3.72
3673 4647 4.400567 ACATCCTACCGTAGAACCTAACAC 59.599 45.833 7.16 0.00 0.00 3.32
3674 4648 4.400251 CACATCCTACCGTAGAACCTAACA 59.600 45.833 7.16 0.00 0.00 2.41
3675 4649 4.400567 ACACATCCTACCGTAGAACCTAAC 59.599 45.833 7.16 0.00 0.00 2.34
3676 4650 4.603131 ACACATCCTACCGTAGAACCTAA 58.397 43.478 7.16 0.00 0.00 2.69
3677 4651 4.202441 GACACATCCTACCGTAGAACCTA 58.798 47.826 7.16 0.00 0.00 3.08
3678 4652 3.022406 GACACATCCTACCGTAGAACCT 58.978 50.000 7.16 0.00 0.00 3.50
3679 4653 2.223433 CGACACATCCTACCGTAGAACC 60.223 54.545 7.16 0.00 0.00 3.62
3680 4654 2.679837 TCGACACATCCTACCGTAGAAC 59.320 50.000 7.16 0.00 0.00 3.01
3681 4655 2.679837 GTCGACACATCCTACCGTAGAA 59.320 50.000 11.55 0.00 0.00 2.10
3682 4656 2.093288 AGTCGACACATCCTACCGTAGA 60.093 50.000 19.50 0.00 0.00 2.59
3683 4657 2.286872 AGTCGACACATCCTACCGTAG 58.713 52.381 19.50 0.00 0.00 3.51
3684 4658 2.408271 AGTCGACACATCCTACCGTA 57.592 50.000 19.50 0.00 0.00 4.02
3685 4659 1.471684 GAAGTCGACACATCCTACCGT 59.528 52.381 19.50 0.00 0.00 4.83
3686 4660 1.471287 TGAAGTCGACACATCCTACCG 59.529 52.381 19.50 0.00 0.00 4.02
3687 4661 3.587797 TTGAAGTCGACACATCCTACC 57.412 47.619 19.50 0.00 0.00 3.18
3688 4662 7.591006 TTAATTTGAAGTCGACACATCCTAC 57.409 36.000 19.50 0.41 0.00 3.18
3689 4663 8.610248 TTTTAATTTGAAGTCGACACATCCTA 57.390 30.769 19.50 6.30 0.00 2.94
3690 4664 7.504924 TTTTAATTTGAAGTCGACACATCCT 57.495 32.000 19.50 7.15 0.00 3.24
3691 4665 8.742554 AATTTTAATTTGAAGTCGACACATCC 57.257 30.769 19.50 2.19 0.00 3.51
3693 4667 9.191995 GGAAATTTTAATTTGAAGTCGACACAT 57.808 29.630 19.50 2.96 38.64 3.21
3694 4668 8.410141 AGGAAATTTTAATTTGAAGTCGACACA 58.590 29.630 19.50 14.40 38.64 3.72
3695 4669 8.797266 AGGAAATTTTAATTTGAAGTCGACAC 57.203 30.769 19.50 11.83 38.64 3.67
3696 4670 9.887406 GTAGGAAATTTTAATTTGAAGTCGACA 57.113 29.630 19.50 0.00 38.64 4.35
3697 4671 9.047871 CGTAGGAAATTTTAATTTGAAGTCGAC 57.952 33.333 7.70 7.70 38.64 4.20
3698 4672 8.776470 ACGTAGGAAATTTTAATTTGAAGTCGA 58.224 29.630 5.24 0.00 38.64 4.20
3699 4673 8.837059 CACGTAGGAAATTTTAATTTGAAGTCG 58.163 33.333 5.24 6.45 38.64 4.18
3700 4674 8.635983 GCACGTAGGAAATTTTAATTTGAAGTC 58.364 33.333 5.24 0.00 38.64 3.01
3701 4675 8.138712 TGCACGTAGGAAATTTTAATTTGAAGT 58.861 29.630 5.24 0.00 38.64 3.01
3702 4676 8.514136 TGCACGTAGGAAATTTTAATTTGAAG 57.486 30.769 5.24 0.00 38.64 3.02
3703 4677 8.353684 TCTGCACGTAGGAAATTTTAATTTGAA 58.646 29.630 5.24 0.00 38.64 2.69
3704 4678 7.877003 TCTGCACGTAGGAAATTTTAATTTGA 58.123 30.769 5.24 0.00 38.64 2.69
3705 4679 8.424731 GTTCTGCACGTAGGAAATTTTAATTTG 58.575 33.333 5.24 0.00 38.64 2.32
3706 4680 8.138712 TGTTCTGCACGTAGGAAATTTTAATTT 58.861 29.630 0.27 0.27 41.06 1.82
3707 4681 7.653647 TGTTCTGCACGTAGGAAATTTTAATT 58.346 30.769 0.00 0.00 0.00 1.40
3708 4682 7.209471 TGTTCTGCACGTAGGAAATTTTAAT 57.791 32.000 0.00 0.00 0.00 1.40
3709 4683 6.621316 TGTTCTGCACGTAGGAAATTTTAA 57.379 33.333 0.00 0.00 0.00 1.52
3710 4684 6.432107 GTTGTTCTGCACGTAGGAAATTTTA 58.568 36.000 0.00 0.00 0.00 1.52
3711 4685 5.278604 GTTGTTCTGCACGTAGGAAATTTT 58.721 37.500 0.00 0.00 0.00 1.82
3712 4686 4.261447 GGTTGTTCTGCACGTAGGAAATTT 60.261 41.667 0.00 0.00 0.00 1.82
3713 4687 3.252458 GGTTGTTCTGCACGTAGGAAATT 59.748 43.478 0.00 0.00 0.00 1.82
3714 4688 2.812011 GGTTGTTCTGCACGTAGGAAAT 59.188 45.455 0.00 0.00 0.00 2.17
3715 4689 2.215196 GGTTGTTCTGCACGTAGGAAA 58.785 47.619 0.00 0.00 0.00 3.13
3716 4690 1.139256 TGGTTGTTCTGCACGTAGGAA 59.861 47.619 0.00 0.00 0.00 3.36
3717 4691 0.753867 TGGTTGTTCTGCACGTAGGA 59.246 50.000 0.00 0.00 0.00 2.94
3718 4692 1.148310 CTGGTTGTTCTGCACGTAGG 58.852 55.000 0.00 0.00 0.00 3.18
3719 4693 2.148916 TCTGGTTGTTCTGCACGTAG 57.851 50.000 0.00 0.00 0.00 3.51
3720 4694 2.605837 TTCTGGTTGTTCTGCACGTA 57.394 45.000 0.00 0.00 0.00 3.57
3721 4695 1.400494 GTTTCTGGTTGTTCTGCACGT 59.600 47.619 0.00 0.00 0.00 4.49
3722 4696 1.400142 TGTTTCTGGTTGTTCTGCACG 59.600 47.619 0.00 0.00 0.00 5.34
3723 4697 3.374745 CATGTTTCTGGTTGTTCTGCAC 58.625 45.455 0.00 0.00 0.00 4.57
3724 4698 2.223782 GCATGTTTCTGGTTGTTCTGCA 60.224 45.455 0.00 0.00 0.00 4.41
3725 4699 2.035066 AGCATGTTTCTGGTTGTTCTGC 59.965 45.455 0.00 0.00 0.00 4.26
3726 4700 3.996150 AGCATGTTTCTGGTTGTTCTG 57.004 42.857 0.00 0.00 0.00 3.02
3727 4701 3.498397 CGTAGCATGTTTCTGGTTGTTCT 59.502 43.478 0.00 0.00 0.00 3.01
3728 4702 3.364964 CCGTAGCATGTTTCTGGTTGTTC 60.365 47.826 0.00 0.00 0.00 3.18
3729 4703 2.552315 CCGTAGCATGTTTCTGGTTGTT 59.448 45.455 0.00 0.00 0.00 2.83
3730 4704 2.151202 CCGTAGCATGTTTCTGGTTGT 58.849 47.619 0.00 0.00 0.00 3.32
3731 4705 1.468520 CCCGTAGCATGTTTCTGGTTG 59.531 52.381 0.00 0.00 0.00 3.77
3732 4706 1.349688 TCCCGTAGCATGTTTCTGGTT 59.650 47.619 0.00 0.00 0.00 3.67
3733 4707 0.981183 TCCCGTAGCATGTTTCTGGT 59.019 50.000 0.00 0.00 0.00 4.00
3734 4708 2.107950 TTCCCGTAGCATGTTTCTGG 57.892 50.000 0.00 0.00 0.00 3.86
3735 4709 2.355756 CCATTCCCGTAGCATGTTTCTG 59.644 50.000 0.00 0.00 0.00 3.02
3736 4710 2.238646 TCCATTCCCGTAGCATGTTTCT 59.761 45.455 0.00 0.00 0.00 2.52
3737 4711 2.639065 TCCATTCCCGTAGCATGTTTC 58.361 47.619 0.00 0.00 0.00 2.78
3738 4712 2.799126 TCCATTCCCGTAGCATGTTT 57.201 45.000 0.00 0.00 0.00 2.83
3739 4713 2.172505 TGATCCATTCCCGTAGCATGTT 59.827 45.455 0.00 0.00 0.00 2.71
3740 4714 1.768275 TGATCCATTCCCGTAGCATGT 59.232 47.619 0.00 0.00 0.00 3.21
3741 4715 2.146342 GTGATCCATTCCCGTAGCATG 58.854 52.381 0.00 0.00 0.00 4.06
3742 4716 1.768275 TGTGATCCATTCCCGTAGCAT 59.232 47.619 0.00 0.00 0.00 3.79
3743 4717 1.138859 CTGTGATCCATTCCCGTAGCA 59.861 52.381 0.00 0.00 0.00 3.49
3744 4718 1.412710 TCTGTGATCCATTCCCGTAGC 59.587 52.381 0.00 0.00 0.00 3.58
3745 4719 3.612717 CGATCTGTGATCCATTCCCGTAG 60.613 52.174 2.45 0.00 0.00 3.51
3746 4720 2.296190 CGATCTGTGATCCATTCCCGTA 59.704 50.000 2.45 0.00 0.00 4.02
3747 4721 1.069204 CGATCTGTGATCCATTCCCGT 59.931 52.381 2.45 0.00 0.00 5.28
3748 4722 1.069204 ACGATCTGTGATCCATTCCCG 59.931 52.381 0.00 0.00 0.00 5.14
3749 4723 2.918712 ACGATCTGTGATCCATTCCC 57.081 50.000 0.00 0.00 0.00 3.97
3750 4724 5.406780 GTGATAACGATCTGTGATCCATTCC 59.593 44.000 10.62 0.00 37.62 3.01
3751 4725 6.219473 AGTGATAACGATCTGTGATCCATTC 58.781 40.000 10.62 2.91 37.62 2.67
3752 4726 6.166984 AGTGATAACGATCTGTGATCCATT 57.833 37.500 10.62 0.99 37.62 3.16
3753 4727 5.798125 AGTGATAACGATCTGTGATCCAT 57.202 39.130 10.62 0.75 37.62 3.41
3754 4728 6.017026 GTCTAGTGATAACGATCTGTGATCCA 60.017 42.308 10.62 0.00 37.62 3.41
3755 4729 6.375377 GTCTAGTGATAACGATCTGTGATCC 58.625 44.000 10.62 4.96 37.62 3.36
3756 4730 6.074642 CGTCTAGTGATAACGATCTGTGATC 58.925 44.000 7.65 7.65 38.75 2.92
3757 4731 5.561145 GCGTCTAGTGATAACGATCTGTGAT 60.561 44.000 5.20 0.00 38.65 3.06
3758 4732 4.260661 GCGTCTAGTGATAACGATCTGTGA 60.261 45.833 5.20 0.00 38.65 3.58
3759 4733 3.969352 GCGTCTAGTGATAACGATCTGTG 59.031 47.826 5.20 0.00 38.65 3.66
3760 4734 3.303197 CGCGTCTAGTGATAACGATCTGT 60.303 47.826 0.00 0.00 38.65 3.41
3761 4735 3.219189 CGCGTCTAGTGATAACGATCTG 58.781 50.000 0.00 0.00 38.65 2.90
3762 4736 2.349627 GCGCGTCTAGTGATAACGATCT 60.350 50.000 8.43 0.00 38.65 2.75
3763 4737 1.970608 GCGCGTCTAGTGATAACGATC 59.029 52.381 8.43 0.00 38.65 3.69
3764 4738 1.332686 TGCGCGTCTAGTGATAACGAT 59.667 47.619 8.43 0.00 38.65 3.73
3765 4739 0.728542 TGCGCGTCTAGTGATAACGA 59.271 50.000 8.43 0.00 38.65 3.85
3766 4740 1.113253 CTGCGCGTCTAGTGATAACG 58.887 55.000 8.43 0.00 39.33 3.18
3767 4741 1.846782 CACTGCGCGTCTAGTGATAAC 59.153 52.381 25.48 0.46 45.46 1.89
3768 4742 1.797713 GCACTGCGCGTCTAGTGATAA 60.798 52.381 30.37 0.00 45.46 1.75
3769 4743 0.248498 GCACTGCGCGTCTAGTGATA 60.248 55.000 30.37 0.00 45.46 2.15
3770 4744 1.517257 GCACTGCGCGTCTAGTGAT 60.517 57.895 30.37 4.40 45.46 3.06
3771 4745 2.126463 GCACTGCGCGTCTAGTGA 60.126 61.111 30.37 0.00 45.46 3.41
3772 4746 3.181967 GGCACTGCGCGTCTAGTG 61.182 66.667 25.40 25.40 45.40 2.74
3773 4747 4.778415 CGGCACTGCGCGTCTAGT 62.778 66.667 8.43 7.51 43.84 2.57
3774 4748 4.778415 ACGGCACTGCGCGTCTAG 62.778 66.667 8.43 6.80 43.84 2.43
3789 4763 0.307760 AACTCTTTTTCCGCTGCACG 59.692 50.000 0.00 2.27 43.15 5.34
3790 4764 1.600413 CCAACTCTTTTTCCGCTGCAC 60.600 52.381 0.00 0.00 0.00 4.57
3791 4765 0.667993 CCAACTCTTTTTCCGCTGCA 59.332 50.000 0.00 0.00 0.00 4.41
3792 4766 0.039165 CCCAACTCTTTTTCCGCTGC 60.039 55.000 0.00 0.00 0.00 5.25
3793 4767 0.598065 CCCCAACTCTTTTTCCGCTG 59.402 55.000 0.00 0.00 0.00 5.18
3794 4768 1.179174 GCCCCAACTCTTTTTCCGCT 61.179 55.000 0.00 0.00 0.00 5.52
3795 4769 1.289066 GCCCCAACTCTTTTTCCGC 59.711 57.895 0.00 0.00 0.00 5.54
3796 4770 0.598065 CTGCCCCAACTCTTTTTCCG 59.402 55.000 0.00 0.00 0.00 4.30
3797 4771 0.318441 GCTGCCCCAACTCTTTTTCC 59.682 55.000 0.00 0.00 0.00 3.13
3798 4772 0.039165 CGCTGCCCCAACTCTTTTTC 60.039 55.000 0.00 0.00 0.00 2.29
3799 4773 2.041153 CGCTGCCCCAACTCTTTTT 58.959 52.632 0.00 0.00 0.00 1.94
3800 4774 2.564721 GCGCTGCCCCAACTCTTTT 61.565 57.895 0.00 0.00 0.00 2.27
3801 4775 2.985847 GCGCTGCCCCAACTCTTT 60.986 61.111 0.00 0.00 0.00 2.52
3830 4804 4.796231 CTCCGGGAACACGAGGCG 62.796 72.222 0.00 0.00 35.47 5.52
3831 4805 3.644399 GACTCCGGGAACACGAGGC 62.644 68.421 0.00 0.00 35.47 4.70
3832 4806 2.572284 GACTCCGGGAACACGAGG 59.428 66.667 0.00 0.00 35.47 4.63
3833 4807 2.178521 CGACTCCGGGAACACGAG 59.821 66.667 0.00 0.00 35.47 4.18
3834 4808 2.595463 ACGACTCCGGGAACACGA 60.595 61.111 18.81 0.00 40.78 4.35
3835 4809 2.126580 GACGACTCCGGGAACACG 60.127 66.667 0.00 13.02 40.78 4.49
3836 4810 1.212229 GAGACGACTCCGGGAACAC 59.788 63.158 0.00 0.00 40.78 3.32
3837 4811 3.677527 GAGACGACTCCGGGAACA 58.322 61.111 0.00 0.00 40.78 3.18
3845 4819 1.513622 GGCAAGGAGGAGACGACTC 59.486 63.158 6.33 6.33 41.94 3.36
3846 4820 2.344203 CGGCAAGGAGGAGACGACT 61.344 63.158 0.00 0.00 0.00 4.18
3847 4821 2.182030 CGGCAAGGAGGAGACGAC 59.818 66.667 0.00 0.00 0.00 4.34
3848 4822 3.068691 CCGGCAAGGAGGAGACGA 61.069 66.667 0.00 0.00 45.00 4.20
3849 4823 3.358076 GACCGGCAAGGAGGAGACG 62.358 68.421 0.00 0.00 45.00 4.18
3850 4824 1.950973 GAGACCGGCAAGGAGGAGAC 61.951 65.000 0.00 0.00 45.00 3.36
3851 4825 1.682684 GAGACCGGCAAGGAGGAGA 60.683 63.158 0.00 0.00 45.00 3.71
3852 4826 2.726351 GGAGACCGGCAAGGAGGAG 61.726 68.421 0.00 0.00 45.00 3.69
3853 4827 2.683933 GGAGACCGGCAAGGAGGA 60.684 66.667 0.00 0.00 45.00 3.71
3854 4828 3.787001 GGGAGACCGGCAAGGAGG 61.787 72.222 0.00 0.00 45.00 4.30
3865 4839 0.237761 CCGATCGATACGTGGGAGAC 59.762 60.000 18.66 0.00 0.00 3.36
3866 4840 0.107268 TCCGATCGATACGTGGGAGA 59.893 55.000 18.66 0.00 0.00 3.71
3867 4841 1.130749 GATCCGATCGATACGTGGGAG 59.869 57.143 18.66 0.00 0.00 4.30
3868 4842 1.162698 GATCCGATCGATACGTGGGA 58.837 55.000 18.66 2.47 0.00 4.37
3869 4843 0.170561 GGATCCGATCGATACGTGGG 59.829 60.000 18.66 0.00 0.00 4.61
3870 4844 0.170561 GGGATCCGATCGATACGTGG 59.829 60.000 18.66 0.00 31.69 4.94
3871 4845 3.696782 GGGATCCGATCGATACGTG 57.303 57.895 18.66 0.00 31.69 4.49
3883 4857 1.814169 GAACCTGTTCGCGGGATCC 60.814 63.158 6.13 1.92 46.74 3.36
3884 4858 3.795638 GAACCTGTTCGCGGGATC 58.204 61.111 6.13 2.93 46.74 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.