Multiple sequence alignment - TraesCS4B01G312400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G312400 chr4B 100.000 2741 0 0 1 2741 602040362 602037622 0.000000e+00 5062
1 TraesCS4B01G312400 chr4B 85.333 450 50 14 1290 1734 44118920 44119358 4.160000e-123 451
2 TraesCS4B01G312400 chr4A 91.936 1637 75 19 358 1948 684176917 684175292 0.000000e+00 2239
3 TraesCS4B01G312400 chr4A 88.140 801 73 15 1951 2740 728595188 728594399 0.000000e+00 933
4 TraesCS4B01G312400 chr4A 93.036 359 22 3 1 357 731976154 731976511 3.130000e-144 521
5 TraesCS4B01G312400 chr4A 82.609 552 55 24 1291 1821 571971958 571972489 1.500000e-122 449
6 TraesCS4B01G312400 chr4D 92.091 1454 60 18 517 1950 477364109 477362691 0.000000e+00 1997
7 TraesCS4B01G312400 chr4D 84.934 458 40 16 1290 1734 30755407 30755848 1.170000e-118 436
8 TraesCS4B01G312400 chr7A 94.058 791 46 1 1950 2740 681260659 681259870 0.000000e+00 1199
9 TraesCS4B01G312400 chr7A 93.056 360 21 4 1 357 2839516 2839874 8.700000e-145 523
10 TraesCS4B01G312400 chr3D 94.473 778 41 1 1958 2735 599390809 599391584 0.000000e+00 1197
11 TraesCS4B01G312400 chr6A 91.646 790 63 3 1951 2740 32937113 32936327 0.000000e+00 1090
12 TraesCS4B01G312400 chr6A 93.593 359 21 2 1 357 8336621 8336263 4.020000e-148 534
13 TraesCS4B01G312400 chr3B 90.759 790 71 2 1951 2740 47607418 47606631 0.000000e+00 1053
14 TraesCS4B01G312400 chr3B 90.114 789 76 2 1952 2740 49149487 49150273 0.000000e+00 1024
15 TraesCS4B01G312400 chr3B 94.183 361 19 2 1 359 344180602 344180962 1.430000e-152 549
16 TraesCS4B01G312400 chr3B 92.778 360 22 4 1 357 786046988 786047346 4.050000e-143 518
17 TraesCS4B01G312400 chr1B 89.175 776 82 2 1960 2735 48930489 48929716 0.000000e+00 966
18 TraesCS4B01G312400 chr1B 92.521 361 23 4 1 358 18857701 18857342 5.230000e-142 514
19 TraesCS4B01G312400 chr5D 88.529 802 69 12 1951 2740 9585802 9585012 0.000000e+00 950
20 TraesCS4B01G312400 chr5D 86.011 529 53 14 1234 1756 409007891 409007378 5.160000e-152 547
21 TraesCS4B01G312400 chr5D 85.038 528 61 10 1235 1759 409357981 409357469 3.130000e-144 521
22 TraesCS4B01G312400 chr5A 87.750 800 78 13 1951 2740 622410441 622411230 0.000000e+00 917
23 TraesCS4B01G312400 chr5A 84.280 528 65 10 1235 1759 520532106 520531594 1.470000e-137 499
24 TraesCS4B01G312400 chr2B 86.918 795 84 5 1951 2735 175938890 175939674 0.000000e+00 874
25 TraesCS4B01G312400 chr2B 93.056 360 21 4 1 357 260644465 260644107 8.700000e-145 523
26 TraesCS4B01G312400 chr5B 91.152 486 24 2 2255 2740 682202140 682201674 2.300000e-180 641
27 TraesCS4B01G312400 chr5B 85.795 528 57 12 1235 1759 491173686 491173174 6.680000e-151 544
28 TraesCS4B01G312400 chr5B 95.195 333 16 0 1951 2283 682202486 682202154 6.720000e-146 527
29 TraesCS4B01G312400 chr7B 93.277 357 20 4 3 357 36666054 36665700 8.700000e-145 523
30 TraesCS4B01G312400 chr6B 93.036 359 21 4 1 356 65760634 65760991 3.130000e-144 521


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G312400 chr4B 602037622 602040362 2740 True 5062 5062 100.0000 1 2741 1 chr4B.!!$R1 2740
1 TraesCS4B01G312400 chr4A 684175292 684176917 1625 True 2239 2239 91.9360 358 1948 1 chr4A.!!$R1 1590
2 TraesCS4B01G312400 chr4A 728594399 728595188 789 True 933 933 88.1400 1951 2740 1 chr4A.!!$R2 789
3 TraesCS4B01G312400 chr4A 571971958 571972489 531 False 449 449 82.6090 1291 1821 1 chr4A.!!$F1 530
4 TraesCS4B01G312400 chr4D 477362691 477364109 1418 True 1997 1997 92.0910 517 1950 1 chr4D.!!$R1 1433
5 TraesCS4B01G312400 chr7A 681259870 681260659 789 True 1199 1199 94.0580 1950 2740 1 chr7A.!!$R1 790
6 TraesCS4B01G312400 chr3D 599390809 599391584 775 False 1197 1197 94.4730 1958 2735 1 chr3D.!!$F1 777
7 TraesCS4B01G312400 chr6A 32936327 32937113 786 True 1090 1090 91.6460 1951 2740 1 chr6A.!!$R2 789
8 TraesCS4B01G312400 chr3B 47606631 47607418 787 True 1053 1053 90.7590 1951 2740 1 chr3B.!!$R1 789
9 TraesCS4B01G312400 chr3B 49149487 49150273 786 False 1024 1024 90.1140 1952 2740 1 chr3B.!!$F1 788
10 TraesCS4B01G312400 chr1B 48929716 48930489 773 True 966 966 89.1750 1960 2735 1 chr1B.!!$R2 775
11 TraesCS4B01G312400 chr5D 9585012 9585802 790 True 950 950 88.5290 1951 2740 1 chr5D.!!$R1 789
12 TraesCS4B01G312400 chr5D 409007378 409007891 513 True 547 547 86.0110 1234 1756 1 chr5D.!!$R2 522
13 TraesCS4B01G312400 chr5D 409357469 409357981 512 True 521 521 85.0380 1235 1759 1 chr5D.!!$R3 524
14 TraesCS4B01G312400 chr5A 622410441 622411230 789 False 917 917 87.7500 1951 2740 1 chr5A.!!$F1 789
15 TraesCS4B01G312400 chr5A 520531594 520532106 512 True 499 499 84.2800 1235 1759 1 chr5A.!!$R1 524
16 TraesCS4B01G312400 chr2B 175938890 175939674 784 False 874 874 86.9180 1951 2735 1 chr2B.!!$F1 784
17 TraesCS4B01G312400 chr5B 682201674 682202486 812 True 584 641 93.1735 1951 2740 2 chr5B.!!$R2 789
18 TraesCS4B01G312400 chr5B 491173174 491173686 512 True 544 544 85.7950 1235 1759 1 chr5B.!!$R1 524


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
549 553 0.03254 CCATCGCTCGACCATCATCA 59.967 55.0 0.0 0.0 0.0 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2355 2479 1.002257 CCACACCTGCCATACTGCA 60.002 57.895 0.0 0.0 39.37 4.41 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.939460 AAACTCAAGTTTGCGCTTGT 57.061 40.000 9.73 0.00 45.55 3.16
30 31 2.939460 AACTCAAGTTTGCGCTTGTT 57.061 40.000 9.73 0.00 44.41 2.83
31 32 4.364415 AAACTCAAGTTTGCGCTTGTTA 57.636 36.364 9.73 0.00 45.55 2.41
32 33 4.568152 AACTCAAGTTTGCGCTTGTTAT 57.432 36.364 9.73 0.00 44.41 1.89
33 34 5.682943 AACTCAAGTTTGCGCTTGTTATA 57.317 34.783 9.73 0.00 44.41 0.98
34 35 5.880054 ACTCAAGTTTGCGCTTGTTATAT 57.120 34.783 9.73 0.00 44.41 0.86
35 36 5.631026 ACTCAAGTTTGCGCTTGTTATATG 58.369 37.500 9.73 0.00 44.41 1.78
36 37 4.980590 TCAAGTTTGCGCTTGTTATATGG 58.019 39.130 9.73 0.00 44.41 2.74
37 38 4.697828 TCAAGTTTGCGCTTGTTATATGGA 59.302 37.500 9.73 0.00 44.41 3.41
38 39 4.616181 AGTTTGCGCTTGTTATATGGAC 57.384 40.909 9.73 0.00 0.00 4.02
39 40 3.063452 AGTTTGCGCTTGTTATATGGACG 59.937 43.478 9.73 0.00 0.00 4.79
40 41 1.577468 TGCGCTTGTTATATGGACGG 58.423 50.000 9.73 0.00 0.00 4.79
41 42 1.137282 TGCGCTTGTTATATGGACGGA 59.863 47.619 9.73 0.00 0.00 4.69
42 43 1.792949 GCGCTTGTTATATGGACGGAG 59.207 52.381 0.00 0.00 0.00 4.63
43 44 2.545113 GCGCTTGTTATATGGACGGAGA 60.545 50.000 0.00 0.00 0.00 3.71
44 45 3.861131 GCGCTTGTTATATGGACGGAGAT 60.861 47.826 0.00 0.00 0.00 2.75
45 46 3.675225 CGCTTGTTATATGGACGGAGATG 59.325 47.826 0.00 0.00 0.00 2.90
46 47 3.433615 GCTTGTTATATGGACGGAGATGC 59.566 47.826 0.00 0.00 0.00 3.91
47 48 3.297830 TGTTATATGGACGGAGATGCG 57.702 47.619 0.00 0.00 0.00 4.73
48 49 2.029380 TGTTATATGGACGGAGATGCGG 60.029 50.000 0.00 0.00 0.00 5.69
49 50 0.530744 TATATGGACGGAGATGCGGC 59.469 55.000 0.00 0.00 0.00 6.53
50 51 2.172483 ATATGGACGGAGATGCGGCC 62.172 60.000 12.22 12.22 0.00 6.13
52 53 4.467084 GGACGGAGATGCGGCCAA 62.467 66.667 14.33 0.00 0.00 4.52
53 54 3.195698 GACGGAGATGCGGCCAAC 61.196 66.667 2.24 0.00 0.00 3.77
54 55 3.950794 GACGGAGATGCGGCCAACA 62.951 63.158 2.24 0.00 0.00 3.33
55 56 2.745884 CGGAGATGCGGCCAACAA 60.746 61.111 2.24 0.00 0.00 2.83
56 57 2.753966 CGGAGATGCGGCCAACAAG 61.754 63.158 2.24 0.00 0.00 3.16
57 58 2.486966 GAGATGCGGCCAACAAGC 59.513 61.111 2.24 0.00 0.00 4.01
58 59 3.386867 GAGATGCGGCCAACAAGCG 62.387 63.158 2.24 0.00 0.00 4.68
65 66 3.910490 GCCAACAAGCGCACCCAA 61.910 61.111 11.47 0.00 0.00 4.12
66 67 2.811101 CCAACAAGCGCACCCAAA 59.189 55.556 11.47 0.00 0.00 3.28
67 68 1.142748 CCAACAAGCGCACCCAAAA 59.857 52.632 11.47 0.00 0.00 2.44
68 69 0.460987 CCAACAAGCGCACCCAAAAA 60.461 50.000 11.47 0.00 0.00 1.94
69 70 0.649993 CAACAAGCGCACCCAAAAAC 59.350 50.000 11.47 0.00 0.00 2.43
70 71 0.461163 AACAAGCGCACCCAAAAACC 60.461 50.000 11.47 0.00 0.00 3.27
71 72 1.326951 ACAAGCGCACCCAAAAACCT 61.327 50.000 11.47 0.00 0.00 3.50
72 73 0.179086 CAAGCGCACCCAAAAACCTT 60.179 50.000 11.47 0.00 0.00 3.50
73 74 0.179086 AAGCGCACCCAAAAACCTTG 60.179 50.000 11.47 0.00 0.00 3.61
74 75 1.040339 AGCGCACCCAAAAACCTTGA 61.040 50.000 11.47 0.00 0.00 3.02
75 76 0.179097 GCGCACCCAAAAACCTTGAA 60.179 50.000 0.30 0.00 0.00 2.69
76 77 1.740718 GCGCACCCAAAAACCTTGAAA 60.741 47.619 0.30 0.00 0.00 2.69
77 78 2.622436 CGCACCCAAAAACCTTGAAAA 58.378 42.857 0.00 0.00 0.00 2.29
78 79 3.202097 CGCACCCAAAAACCTTGAAAAT 58.798 40.909 0.00 0.00 0.00 1.82
79 80 3.002144 CGCACCCAAAAACCTTGAAAATG 59.998 43.478 0.00 0.00 0.00 2.32
80 81 3.944650 GCACCCAAAAACCTTGAAAATGT 59.055 39.130 0.00 0.00 0.00 2.71
81 82 5.119694 GCACCCAAAAACCTTGAAAATGTA 58.880 37.500 0.00 0.00 0.00 2.29
82 83 5.762711 GCACCCAAAAACCTTGAAAATGTAT 59.237 36.000 0.00 0.00 0.00 2.29
83 84 6.931840 GCACCCAAAAACCTTGAAAATGTATA 59.068 34.615 0.00 0.00 0.00 1.47
84 85 7.442666 GCACCCAAAAACCTTGAAAATGTATAA 59.557 33.333 0.00 0.00 0.00 0.98
85 86 9.500785 CACCCAAAAACCTTGAAAATGTATAAT 57.499 29.630 0.00 0.00 0.00 1.28
86 87 9.719355 ACCCAAAAACCTTGAAAATGTATAATC 57.281 29.630 0.00 0.00 0.00 1.75
87 88 9.717942 CCCAAAAACCTTGAAAATGTATAATCA 57.282 29.630 0.00 0.00 0.00 2.57
92 93 9.927668 AAACCTTGAAAATGTATAATCAGGTTG 57.072 29.630 0.00 0.00 35.47 3.77
93 94 8.650143 ACCTTGAAAATGTATAATCAGGTTGT 57.350 30.769 0.00 0.00 0.00 3.32
94 95 9.088987 ACCTTGAAAATGTATAATCAGGTTGTT 57.911 29.630 0.00 0.00 0.00 2.83
95 96 9.573133 CCTTGAAAATGTATAATCAGGTTGTTC 57.427 33.333 0.00 0.00 0.00 3.18
104 105 9.613428 TGTATAATCAGGTTGTTCATTAAGGAG 57.387 33.333 0.00 0.00 0.00 3.69
105 106 9.832445 GTATAATCAGGTTGTTCATTAAGGAGA 57.168 33.333 0.00 0.00 0.00 3.71
107 108 7.454260 AATCAGGTTGTTCATTAAGGAGAAC 57.546 36.000 9.89 9.89 43.31 3.01
108 109 5.313712 TCAGGTTGTTCATTAAGGAGAACC 58.686 41.667 18.50 18.50 42.57 3.62
113 114 6.434340 GGTTGTTCATTAAGGAGAACCTGAAT 59.566 38.462 18.73 0.00 45.61 2.57
119 120 2.350863 AGGAGAACCTGAATGGGAGT 57.649 50.000 0.00 0.00 45.92 3.85
120 121 2.192263 AGGAGAACCTGAATGGGAGTC 58.808 52.381 0.00 0.00 45.92 3.36
121 122 2.192263 GGAGAACCTGAATGGGAGTCT 58.808 52.381 0.00 0.00 41.11 3.24
122 123 2.573915 GGAGAACCTGAATGGGAGTCTT 59.426 50.000 0.00 0.00 41.11 3.01
123 124 3.369997 GGAGAACCTGAATGGGAGTCTTC 60.370 52.174 0.00 0.00 41.11 2.87
124 125 3.251484 AGAACCTGAATGGGAGTCTTCA 58.749 45.455 0.00 0.00 41.11 3.02
125 126 3.848975 AGAACCTGAATGGGAGTCTTCAT 59.151 43.478 0.00 0.00 41.11 2.57
126 127 3.641434 ACCTGAATGGGAGTCTTCATG 57.359 47.619 0.00 0.00 41.11 3.07
127 128 2.915604 ACCTGAATGGGAGTCTTCATGT 59.084 45.455 0.00 0.00 41.11 3.21
128 129 3.331889 ACCTGAATGGGAGTCTTCATGTT 59.668 43.478 0.00 0.00 41.11 2.71
129 130 3.944015 CCTGAATGGGAGTCTTCATGTTC 59.056 47.826 0.00 0.00 31.39 3.18
130 131 4.566278 CCTGAATGGGAGTCTTCATGTTCA 60.566 45.833 0.00 0.00 31.39 3.18
131 132 4.984295 TGAATGGGAGTCTTCATGTTCAA 58.016 39.130 0.00 0.00 0.00 2.69
132 133 5.005740 TGAATGGGAGTCTTCATGTTCAAG 58.994 41.667 0.00 0.00 0.00 3.02
133 134 4.916041 ATGGGAGTCTTCATGTTCAAGA 57.084 40.909 0.00 0.00 0.00 3.02
134 135 4.008074 TGGGAGTCTTCATGTTCAAGAC 57.992 45.455 14.81 14.81 46.99 3.01
139 140 4.637574 GTCTTCATGTTCAAGACACGAG 57.362 45.455 16.80 0.00 46.22 4.18
140 141 3.430218 GTCTTCATGTTCAAGACACGAGG 59.570 47.826 16.80 0.00 46.22 4.63
141 142 2.455674 TCATGTTCAAGACACGAGGG 57.544 50.000 0.00 0.00 42.04 4.30
142 143 1.001974 TCATGTTCAAGACACGAGGGG 59.998 52.381 0.00 0.00 42.04 4.79
143 144 1.056660 ATGTTCAAGACACGAGGGGT 58.943 50.000 0.00 0.00 42.04 4.95
151 152 4.619227 CACGAGGGGTGTGCGGTT 62.619 66.667 0.00 0.00 41.89 4.44
152 153 3.868985 ACGAGGGGTGTGCGGTTT 61.869 61.111 0.00 0.00 0.00 3.27
153 154 2.344500 CGAGGGGTGTGCGGTTTA 59.656 61.111 0.00 0.00 0.00 2.01
154 155 1.078708 CGAGGGGTGTGCGGTTTAT 60.079 57.895 0.00 0.00 0.00 1.40
155 156 1.366111 CGAGGGGTGTGCGGTTTATG 61.366 60.000 0.00 0.00 0.00 1.90
156 157 0.035820 GAGGGGTGTGCGGTTTATGA 60.036 55.000 0.00 0.00 0.00 2.15
157 158 0.035439 AGGGGTGTGCGGTTTATGAG 60.035 55.000 0.00 0.00 0.00 2.90
158 159 0.035820 GGGGTGTGCGGTTTATGAGA 60.036 55.000 0.00 0.00 0.00 3.27
159 160 1.612199 GGGGTGTGCGGTTTATGAGAA 60.612 52.381 0.00 0.00 0.00 2.87
160 161 2.156098 GGGTGTGCGGTTTATGAGAAA 58.844 47.619 0.00 0.00 0.00 2.52
161 162 2.554893 GGGTGTGCGGTTTATGAGAAAA 59.445 45.455 0.00 0.00 0.00 2.29
162 163 3.561503 GGTGTGCGGTTTATGAGAAAAC 58.438 45.455 0.00 0.00 38.39 2.43
163 164 3.003897 GGTGTGCGGTTTATGAGAAAACA 59.996 43.478 2.31 0.00 40.42 2.83
164 165 4.320935 GGTGTGCGGTTTATGAGAAAACAT 60.321 41.667 2.31 0.00 40.42 2.71
165 166 4.616802 GTGTGCGGTTTATGAGAAAACATG 59.383 41.667 0.00 0.00 40.42 3.21
166 167 3.608073 GTGCGGTTTATGAGAAAACATGC 59.392 43.478 0.00 5.67 40.42 4.06
167 168 3.254411 TGCGGTTTATGAGAAAACATGCA 59.746 39.130 11.89 11.89 43.67 3.96
168 169 3.853671 GCGGTTTATGAGAAAACATGCAG 59.146 43.478 0.00 0.00 40.42 4.41
169 170 4.615912 GCGGTTTATGAGAAAACATGCAGT 60.616 41.667 0.00 0.00 40.42 4.40
170 171 4.853196 CGGTTTATGAGAAAACATGCAGTG 59.147 41.667 0.00 0.00 40.42 3.66
171 172 5.163513 GGTTTATGAGAAAACATGCAGTGG 58.836 41.667 0.00 0.00 40.42 4.00
172 173 5.278957 GGTTTATGAGAAAACATGCAGTGGT 60.279 40.000 0.00 0.00 40.42 4.16
173 174 3.928727 ATGAGAAAACATGCAGTGGTG 57.071 42.857 0.00 0.00 0.00 4.17
174 175 2.929641 TGAGAAAACATGCAGTGGTGA 58.070 42.857 0.00 0.00 0.00 4.02
175 176 3.286353 TGAGAAAACATGCAGTGGTGAA 58.714 40.909 0.00 0.00 0.00 3.18
176 177 3.698539 TGAGAAAACATGCAGTGGTGAAA 59.301 39.130 0.00 0.00 0.00 2.69
177 178 4.202040 TGAGAAAACATGCAGTGGTGAAAG 60.202 41.667 0.00 0.00 0.00 2.62
178 179 2.514205 AAACATGCAGTGGTGAAAGC 57.486 45.000 0.00 0.00 0.00 3.51
179 180 1.401761 AACATGCAGTGGTGAAAGCA 58.598 45.000 0.00 0.00 45.41 3.91
193 194 4.508461 TGAAAGCATCACACCAAGAATG 57.492 40.909 0.00 0.00 31.50 2.67
194 195 4.143543 TGAAAGCATCACACCAAGAATGA 58.856 39.130 0.00 0.00 31.50 2.57
195 196 4.583907 TGAAAGCATCACACCAAGAATGAA 59.416 37.500 0.00 0.00 31.50 2.57
196 197 5.068855 TGAAAGCATCACACCAAGAATGAAA 59.931 36.000 0.00 0.00 31.50 2.69
197 198 4.510038 AGCATCACACCAAGAATGAAAC 57.490 40.909 0.00 0.00 0.00 2.78
198 199 3.058016 AGCATCACACCAAGAATGAAACG 60.058 43.478 0.00 0.00 0.00 3.60
199 200 3.825308 CATCACACCAAGAATGAAACGG 58.175 45.455 0.00 0.00 0.00 4.44
200 201 3.201353 TCACACCAAGAATGAAACGGA 57.799 42.857 0.00 0.00 0.00 4.69
201 202 3.546724 TCACACCAAGAATGAAACGGAA 58.453 40.909 0.00 0.00 0.00 4.30
202 203 3.314080 TCACACCAAGAATGAAACGGAAC 59.686 43.478 0.00 0.00 0.00 3.62
203 204 2.621526 ACACCAAGAATGAAACGGAACC 59.378 45.455 0.00 0.00 0.00 3.62
204 205 1.877443 ACCAAGAATGAAACGGAACCG 59.123 47.619 11.83 11.83 46.03 4.44
205 206 2.147958 CCAAGAATGAAACGGAACCGA 58.852 47.619 20.14 0.00 42.83 4.69
206 207 2.747446 CCAAGAATGAAACGGAACCGAT 59.253 45.455 20.14 5.12 42.83 4.18
207 208 3.426159 CCAAGAATGAAACGGAACCGATG 60.426 47.826 20.14 4.62 42.83 3.84
208 209 1.737793 AGAATGAAACGGAACCGATGC 59.262 47.619 20.14 7.41 42.83 3.91
209 210 1.466950 GAATGAAACGGAACCGATGCA 59.533 47.619 20.14 13.22 42.83 3.96
210 211 1.750193 ATGAAACGGAACCGATGCAT 58.250 45.000 20.14 14.95 42.83 3.96
211 212 0.801872 TGAAACGGAACCGATGCATG 59.198 50.000 20.14 0.00 42.83 4.06
212 213 0.098728 GAAACGGAACCGATGCATGG 59.901 55.000 20.14 8.85 42.83 3.66
213 214 1.312371 AAACGGAACCGATGCATGGG 61.312 55.000 24.68 24.68 42.83 4.00
214 215 3.585990 CGGAACCGATGCATGGGC 61.586 66.667 26.01 11.72 42.83 5.36
215 216 3.219198 GGAACCGATGCATGGGCC 61.219 66.667 26.01 16.72 40.13 5.80
216 217 2.440065 GAACCGATGCATGGGCCA 60.440 61.111 26.01 9.61 40.13 5.36
217 218 2.037049 AACCGATGCATGGGCCAA 59.963 55.556 26.01 0.00 40.13 4.52
218 219 1.603236 GAACCGATGCATGGGCCAAA 61.603 55.000 26.01 0.00 40.13 3.28
219 220 1.190833 AACCGATGCATGGGCCAAAA 61.191 50.000 26.01 0.00 40.13 2.44
220 221 1.142314 CCGATGCATGGGCCAAAAG 59.858 57.895 15.33 4.77 40.13 2.27
221 222 1.321805 CCGATGCATGGGCCAAAAGA 61.322 55.000 15.33 0.00 40.13 2.52
222 223 0.101759 CGATGCATGGGCCAAAAGAG 59.898 55.000 11.89 0.00 40.13 2.85
223 224 1.188863 GATGCATGGGCCAAAAGAGT 58.811 50.000 11.89 0.00 40.13 3.24
224 225 2.378038 GATGCATGGGCCAAAAGAGTA 58.622 47.619 11.89 0.00 40.13 2.59
225 226 2.300956 TGCATGGGCCAAAAGAGTAA 57.699 45.000 11.89 0.00 40.13 2.24
226 227 2.170166 TGCATGGGCCAAAAGAGTAAG 58.830 47.619 11.89 0.00 40.13 2.34
227 228 2.224992 TGCATGGGCCAAAAGAGTAAGA 60.225 45.455 11.89 0.00 40.13 2.10
228 229 2.164422 GCATGGGCCAAAAGAGTAAGAC 59.836 50.000 11.89 0.00 0.00 3.01
229 230 2.579410 TGGGCCAAAAGAGTAAGACC 57.421 50.000 2.13 0.00 0.00 3.85
230 231 1.777878 TGGGCCAAAAGAGTAAGACCA 59.222 47.619 2.13 0.00 0.00 4.02
231 232 2.224769 TGGGCCAAAAGAGTAAGACCAG 60.225 50.000 2.13 0.00 0.00 4.00
232 233 2.224793 GGGCCAAAAGAGTAAGACCAGT 60.225 50.000 4.39 0.00 0.00 4.00
233 234 3.487372 GGCCAAAAGAGTAAGACCAGTT 58.513 45.455 0.00 0.00 0.00 3.16
234 235 3.889538 GGCCAAAAGAGTAAGACCAGTTT 59.110 43.478 0.00 0.00 0.00 2.66
235 236 4.023107 GGCCAAAAGAGTAAGACCAGTTTC 60.023 45.833 0.00 0.00 0.00 2.78
236 237 4.578928 GCCAAAAGAGTAAGACCAGTTTCA 59.421 41.667 0.00 0.00 0.00 2.69
237 238 5.067283 GCCAAAAGAGTAAGACCAGTTTCAA 59.933 40.000 0.00 0.00 0.00 2.69
238 239 6.495706 CCAAAAGAGTAAGACCAGTTTCAAC 58.504 40.000 0.00 0.00 0.00 3.18
239 240 6.094881 CCAAAAGAGTAAGACCAGTTTCAACA 59.905 38.462 0.00 0.00 0.00 3.33
240 241 7.362574 CCAAAAGAGTAAGACCAGTTTCAACAA 60.363 37.037 0.00 0.00 0.00 2.83
241 242 7.881775 AAAGAGTAAGACCAGTTTCAACAAT 57.118 32.000 0.00 0.00 0.00 2.71
242 243 6.867662 AGAGTAAGACCAGTTTCAACAATG 57.132 37.500 0.00 0.00 0.00 2.82
243 244 6.357367 AGAGTAAGACCAGTTTCAACAATGT 58.643 36.000 0.00 0.00 0.00 2.71
244 245 6.260936 AGAGTAAGACCAGTTTCAACAATGTG 59.739 38.462 0.00 0.00 0.00 3.21
245 246 6.119536 AGTAAGACCAGTTTCAACAATGTGA 58.880 36.000 0.00 0.00 0.00 3.58
246 247 4.900635 AGACCAGTTTCAACAATGTGAC 57.099 40.909 0.00 0.00 0.00 3.67
247 248 3.312421 AGACCAGTTTCAACAATGTGACG 59.688 43.478 0.00 0.00 0.00 4.35
248 249 3.275143 ACCAGTTTCAACAATGTGACGA 58.725 40.909 0.00 0.00 0.00 4.20
249 250 3.882888 ACCAGTTTCAACAATGTGACGAT 59.117 39.130 0.00 0.00 0.00 3.73
250 251 4.221342 CCAGTTTCAACAATGTGACGATG 58.779 43.478 0.00 0.00 0.00 3.84
251 252 3.665409 CAGTTTCAACAATGTGACGATGC 59.335 43.478 0.00 0.00 0.00 3.91
252 253 3.565482 AGTTTCAACAATGTGACGATGCT 59.435 39.130 0.00 0.00 0.00 3.79
253 254 4.036734 AGTTTCAACAATGTGACGATGCTT 59.963 37.500 0.00 0.00 0.00 3.91
254 255 5.238432 AGTTTCAACAATGTGACGATGCTTA 59.762 36.000 0.00 0.00 0.00 3.09
255 256 4.661993 TCAACAATGTGACGATGCTTAC 57.338 40.909 0.00 0.00 0.00 2.34
256 257 3.122780 TCAACAATGTGACGATGCTTACG 59.877 43.478 0.00 0.00 0.00 3.18
257 258 2.683968 ACAATGTGACGATGCTTACGT 58.316 42.857 0.00 0.00 46.58 3.57
258 259 3.064207 ACAATGTGACGATGCTTACGTT 58.936 40.909 0.00 0.00 43.97 3.99
259 260 3.122948 ACAATGTGACGATGCTTACGTTC 59.877 43.478 0.00 0.00 43.97 3.95
260 261 1.333115 TGTGACGATGCTTACGTTCG 58.667 50.000 5.11 5.11 43.97 3.95
261 262 1.069091 TGTGACGATGCTTACGTTCGA 60.069 47.619 13.09 0.00 43.97 3.71
262 263 1.316735 GTGACGATGCTTACGTTCGAC 59.683 52.381 13.09 7.70 43.97 4.20
263 264 1.069091 TGACGATGCTTACGTTCGACA 60.069 47.619 13.09 10.12 43.97 4.35
264 265 1.578023 GACGATGCTTACGTTCGACAG 59.422 52.381 13.09 0.00 43.97 3.51
265 266 1.198408 ACGATGCTTACGTTCGACAGA 59.802 47.619 13.09 0.00 41.18 3.41
266 267 2.247637 CGATGCTTACGTTCGACAGAA 58.752 47.619 0.00 0.00 34.92 3.02
286 287 6.748333 AGAACCATTCTGTTGATGTGTATG 57.252 37.500 0.00 0.00 38.91 2.39
287 288 6.240894 AGAACCATTCTGTTGATGTGTATGT 58.759 36.000 0.00 0.00 38.91 2.29
288 289 5.885230 ACCATTCTGTTGATGTGTATGTG 57.115 39.130 0.00 0.00 0.00 3.21
289 290 4.701651 ACCATTCTGTTGATGTGTATGTGG 59.298 41.667 0.00 0.00 0.00 4.17
290 291 4.943093 CCATTCTGTTGATGTGTATGTGGA 59.057 41.667 0.00 0.00 0.00 4.02
291 292 5.163723 CCATTCTGTTGATGTGTATGTGGAC 60.164 44.000 0.00 0.00 0.00 4.02
292 293 4.615588 TCTGTTGATGTGTATGTGGACA 57.384 40.909 0.00 0.00 0.00 4.02
293 294 5.164620 TCTGTTGATGTGTATGTGGACAT 57.835 39.130 0.00 0.00 40.22 3.06
294 295 4.937015 TCTGTTGATGTGTATGTGGACATG 59.063 41.667 2.38 0.00 37.15 3.21
295 296 3.439825 TGTTGATGTGTATGTGGACATGC 59.560 43.478 2.38 1.79 39.06 4.06
296 297 3.632643 TGATGTGTATGTGGACATGCT 57.367 42.857 8.96 0.00 39.30 3.79
297 298 4.751767 TGATGTGTATGTGGACATGCTA 57.248 40.909 8.96 0.17 39.30 3.49
298 299 5.096443 TGATGTGTATGTGGACATGCTAA 57.904 39.130 8.96 0.00 39.30 3.09
299 300 5.495640 TGATGTGTATGTGGACATGCTAAA 58.504 37.500 8.96 0.00 39.30 1.85
300 301 5.353956 TGATGTGTATGTGGACATGCTAAAC 59.646 40.000 8.96 1.00 39.30 2.01
301 302 3.682377 TGTGTATGTGGACATGCTAAACG 59.318 43.478 8.96 0.00 39.30 3.60
302 303 3.063452 GTGTATGTGGACATGCTAAACGG 59.937 47.826 8.96 0.00 39.30 4.44
303 304 2.489938 ATGTGGACATGCTAAACGGT 57.510 45.000 0.00 0.00 34.83 4.83
304 305 1.518325 TGTGGACATGCTAAACGGTG 58.482 50.000 0.00 0.00 0.00 4.94
305 306 1.070914 TGTGGACATGCTAAACGGTGA 59.929 47.619 0.00 0.00 0.00 4.02
306 307 1.732259 GTGGACATGCTAAACGGTGAG 59.268 52.381 0.00 0.00 0.00 3.51
307 308 0.727398 GGACATGCTAAACGGTGAGC 59.273 55.000 1.57 1.57 39.25 4.26
308 309 0.370273 GACATGCTAAACGGTGAGCG 59.630 55.000 5.06 1.13 41.83 5.03
309 310 0.037697 ACATGCTAAACGGTGAGCGA 60.038 50.000 12.27 0.00 41.83 4.93
310 311 1.290203 CATGCTAAACGGTGAGCGAT 58.710 50.000 12.27 0.00 41.83 4.58
311 312 1.258982 CATGCTAAACGGTGAGCGATC 59.741 52.381 12.27 0.00 41.83 3.69
312 313 0.459585 TGCTAAACGGTGAGCGATCC 60.460 55.000 12.27 0.00 41.83 3.36
313 314 1.152383 GCTAAACGGTGAGCGATCCC 61.152 60.000 12.27 0.00 0.00 3.85
314 315 0.174845 CTAAACGGTGAGCGATCCCA 59.825 55.000 12.27 0.00 0.00 4.37
315 316 0.609151 TAAACGGTGAGCGATCCCAA 59.391 50.000 12.27 0.00 0.00 4.12
316 317 0.673644 AAACGGTGAGCGATCCCAAG 60.674 55.000 12.27 0.00 0.00 3.61
317 318 2.892425 CGGTGAGCGATCCCAAGC 60.892 66.667 0.00 0.00 0.00 4.01
318 319 2.892425 GGTGAGCGATCCCAAGCG 60.892 66.667 0.00 0.00 38.61 4.68
319 320 2.184322 GTGAGCGATCCCAAGCGA 59.816 61.111 0.00 0.00 36.04 4.93
320 321 2.167861 GTGAGCGATCCCAAGCGAC 61.168 63.158 0.00 0.00 36.04 5.19
321 322 2.351244 TGAGCGATCCCAAGCGACT 61.351 57.895 0.00 0.00 36.04 4.18
322 323 1.880340 GAGCGATCCCAAGCGACTG 60.880 63.158 0.00 0.00 36.04 3.51
323 324 2.184322 GCGATCCCAAGCGACTGA 59.816 61.111 0.00 0.00 36.04 3.41
324 325 1.447838 GCGATCCCAAGCGACTGAA 60.448 57.895 0.00 0.00 36.04 3.02
325 326 1.019278 GCGATCCCAAGCGACTGAAA 61.019 55.000 0.00 0.00 36.04 2.69
326 327 1.438651 CGATCCCAAGCGACTGAAAA 58.561 50.000 0.00 0.00 36.04 2.29
327 328 1.804151 CGATCCCAAGCGACTGAAAAA 59.196 47.619 0.00 0.00 36.04 1.94
344 345 2.341846 AAAAGGAGTTGAGGTTGCGA 57.658 45.000 0.00 0.00 0.00 5.10
345 346 2.568623 AAAGGAGTTGAGGTTGCGAT 57.431 45.000 0.00 0.00 0.00 4.58
346 347 3.695830 AAAGGAGTTGAGGTTGCGATA 57.304 42.857 0.00 0.00 0.00 2.92
347 348 2.674796 AGGAGTTGAGGTTGCGATAC 57.325 50.000 0.00 0.00 0.00 2.24
348 349 2.180276 AGGAGTTGAGGTTGCGATACT 58.820 47.619 0.00 0.00 0.00 2.12
349 350 2.166664 AGGAGTTGAGGTTGCGATACTC 59.833 50.000 0.00 0.00 33.12 2.59
350 351 2.186076 GAGTTGAGGTTGCGATACTCG 58.814 52.381 0.00 0.00 43.89 4.18
503 507 6.588204 TGCAGAGTAAAAAGAACTGAGGTTA 58.412 36.000 0.00 0.00 35.58 2.85
527 531 6.276847 AGTACATATCTACTGAAAGCTGCAC 58.723 40.000 1.02 0.00 37.60 4.57
549 553 0.032540 CCATCGCTCGACCATCATCA 59.967 55.000 0.00 0.00 0.00 3.07
553 557 2.230660 TCGCTCGACCATCATCATAGT 58.769 47.619 0.00 0.00 0.00 2.12
557 561 4.318333 CGCTCGACCATCATCATAGTTTTG 60.318 45.833 0.00 0.00 0.00 2.44
578 592 3.636764 TGAAGTGCTATAGCTTCCGATCA 59.363 43.478 24.61 16.12 40.07 2.92
624 638 4.201980 CGATGATCTTGTTGACCATGCATT 60.202 41.667 0.00 0.00 26.51 3.56
643 657 4.082571 GCATTCATATGATAGGGTTGCACC 60.083 45.833 6.17 0.00 33.70 5.01
650 664 4.374689 TGATAGGGTTGCACCAGTTAAA 57.625 40.909 7.49 0.00 41.02 1.52
651 665 4.331968 TGATAGGGTTGCACCAGTTAAAG 58.668 43.478 7.49 0.00 41.02 1.85
652 666 2.748209 AGGGTTGCACCAGTTAAAGT 57.252 45.000 7.49 0.00 41.02 2.66
656 670 4.139038 GGGTTGCACCAGTTAAAGTAAGA 58.861 43.478 7.49 0.00 41.02 2.10
657 671 4.765339 GGGTTGCACCAGTTAAAGTAAGAT 59.235 41.667 7.49 0.00 41.02 2.40
658 672 5.941647 GGGTTGCACCAGTTAAAGTAAGATA 59.058 40.000 7.49 0.00 41.02 1.98
669 686 9.303537 CAGTTAAAGTAAGATAAGAGTGCCTAC 57.696 37.037 0.00 0.00 0.00 3.18
703 720 3.772025 AGAAGAGAGATTGACCACCGATT 59.228 43.478 0.00 0.00 0.00 3.34
723 740 1.134699 TGATACGGAGAGGTACGTCGT 60.135 52.381 9.77 2.21 43.02 4.34
780 797 2.336554 ACGTCAACATTTGCATCTGC 57.663 45.000 0.00 0.00 42.50 4.26
845 863 6.641474 ACTGGCCTAGTGACTTTTAGTATTC 58.359 40.000 3.32 0.00 38.49 1.75
955 978 5.472478 TCCTCGCTGTATATAAGGTACTGTG 59.528 44.000 0.00 0.00 40.86 3.66
1043 1066 2.125512 CCACTGCTACCACGGCTC 60.126 66.667 0.00 0.00 0.00 4.70
1088 1111 1.205655 ACACTACACGCATCATCAGCT 59.794 47.619 0.00 0.00 0.00 4.24
1090 1113 2.283617 CACTACACGCATCATCAGCTTC 59.716 50.000 0.00 0.00 0.00 3.86
1119 1142 1.135460 GCTCAAGCTCAAGTTCATGCC 60.135 52.381 0.00 0.00 38.21 4.40
1147 1170 1.078759 GATCGACCACCAGCTGTTCG 61.079 60.000 13.81 14.33 0.00 3.95
1161 1184 1.125093 TGTTCGCCTTCTCCTTCCCA 61.125 55.000 0.00 0.00 0.00 4.37
1192 1215 2.257207 CCTCCACCTCCTTCACTACAA 58.743 52.381 0.00 0.00 0.00 2.41
1193 1216 2.028020 CCTCCACCTCCTTCACTACAAC 60.028 54.545 0.00 0.00 0.00 3.32
1194 1217 2.632996 CTCCACCTCCTTCACTACAACA 59.367 50.000 0.00 0.00 0.00 3.33
1200 1223 1.616865 TCCTTCACTACAACACCTCCG 59.383 52.381 0.00 0.00 0.00 4.63
1443 1469 3.394836 GACCAGGCCGCCTTCTCT 61.395 66.667 9.99 0.00 0.00 3.10
1759 1797 3.953775 CCACCCAACCGCTCCTGT 61.954 66.667 0.00 0.00 0.00 4.00
1999 2072 2.349755 ACCGCGGGTGCACTTAAT 59.650 55.556 31.76 0.00 42.97 1.40
2009 2082 4.069304 GGGTGCACTTAATTCACACTACA 58.931 43.478 17.98 0.00 31.79 2.74
2015 2088 5.796935 GCACTTAATTCACACTACATGCAAG 59.203 40.000 0.00 0.00 0.00 4.01
2072 2145 1.333308 CAATCAAGTCACACACGCCAA 59.667 47.619 0.00 0.00 0.00 4.52
2157 2231 0.037590 AGGGCCGTATTGCAAAGTCA 59.962 50.000 1.71 0.00 0.00 3.41
2505 2629 1.757306 CCTCAAGAGGTGTGGCAGT 59.243 57.895 7.98 0.00 43.61 4.40
2677 2801 0.032130 GCCGCGATGGATTCTCACTA 59.968 55.000 8.23 0.00 42.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.849145 CGCAAACTTGAGTTTCGTTTCAA 59.151 39.130 6.16 0.00 45.54 2.69
3 4 3.421741 CGCAAACTTGAGTTTCGTTTCA 58.578 40.909 6.16 0.00 45.54 2.69
4 5 2.213353 GCGCAAACTTGAGTTTCGTTTC 59.787 45.455 19.45 8.27 45.54 2.78
5 6 2.159435 AGCGCAAACTTGAGTTTCGTTT 60.159 40.909 11.47 11.69 45.54 3.60
6 7 1.400494 AGCGCAAACTTGAGTTTCGTT 59.600 42.857 11.47 14.90 45.54 3.85
7 8 1.014352 AGCGCAAACTTGAGTTTCGT 58.986 45.000 11.47 10.61 45.54 3.85
8 9 2.105323 AAGCGCAAACTTGAGTTTCG 57.895 45.000 11.47 16.68 45.54 3.46
16 17 4.436852 CGTCCATATAACAAGCGCAAACTT 60.437 41.667 11.47 0.00 0.00 2.66
17 18 3.063452 CGTCCATATAACAAGCGCAAACT 59.937 43.478 11.47 0.00 0.00 2.66
18 19 3.350912 CGTCCATATAACAAGCGCAAAC 58.649 45.455 11.47 0.00 0.00 2.93
19 20 2.353269 CCGTCCATATAACAAGCGCAAA 59.647 45.455 11.47 0.00 0.00 3.68
20 21 1.937223 CCGTCCATATAACAAGCGCAA 59.063 47.619 11.47 0.00 0.00 4.85
21 22 1.137282 TCCGTCCATATAACAAGCGCA 59.863 47.619 11.47 0.00 0.00 6.09
22 23 1.792949 CTCCGTCCATATAACAAGCGC 59.207 52.381 0.00 0.00 0.00 5.92
23 24 3.364889 TCTCCGTCCATATAACAAGCG 57.635 47.619 0.00 0.00 0.00 4.68
24 25 3.433615 GCATCTCCGTCCATATAACAAGC 59.566 47.826 0.00 0.00 0.00 4.01
25 26 3.675225 CGCATCTCCGTCCATATAACAAG 59.325 47.826 0.00 0.00 0.00 3.16
26 27 3.554129 CCGCATCTCCGTCCATATAACAA 60.554 47.826 0.00 0.00 0.00 2.83
27 28 2.029380 CCGCATCTCCGTCCATATAACA 60.029 50.000 0.00 0.00 0.00 2.41
28 29 2.607187 CCGCATCTCCGTCCATATAAC 58.393 52.381 0.00 0.00 0.00 1.89
29 30 1.067142 GCCGCATCTCCGTCCATATAA 60.067 52.381 0.00 0.00 0.00 0.98
30 31 0.530744 GCCGCATCTCCGTCCATATA 59.469 55.000 0.00 0.00 0.00 0.86
31 32 1.293498 GCCGCATCTCCGTCCATAT 59.707 57.895 0.00 0.00 0.00 1.78
32 33 2.734591 GCCGCATCTCCGTCCATA 59.265 61.111 0.00 0.00 0.00 2.74
33 34 4.241555 GGCCGCATCTCCGTCCAT 62.242 66.667 0.00 0.00 0.00 3.41
35 36 4.467084 TTGGCCGCATCTCCGTCC 62.467 66.667 0.00 0.00 0.00 4.79
36 37 3.195698 GTTGGCCGCATCTCCGTC 61.196 66.667 0.00 0.00 0.00 4.79
37 38 3.545124 TTGTTGGCCGCATCTCCGT 62.545 57.895 0.00 0.00 0.00 4.69
38 39 2.745884 TTGTTGGCCGCATCTCCG 60.746 61.111 0.00 0.00 0.00 4.63
39 40 3.056313 GCTTGTTGGCCGCATCTCC 62.056 63.158 0.00 0.00 0.00 3.71
40 41 2.486966 GCTTGTTGGCCGCATCTC 59.513 61.111 0.00 0.00 0.00 2.75
41 42 3.434319 CGCTTGTTGGCCGCATCT 61.434 61.111 0.00 0.00 0.00 2.90
48 49 2.914777 TTTTGGGTGCGCTTGTTGGC 62.915 55.000 9.73 0.00 0.00 4.52
49 50 0.460987 TTTTTGGGTGCGCTTGTTGG 60.461 50.000 9.73 0.00 0.00 3.77
50 51 0.649993 GTTTTTGGGTGCGCTTGTTG 59.350 50.000 9.73 0.00 0.00 3.33
51 52 0.461163 GGTTTTTGGGTGCGCTTGTT 60.461 50.000 9.73 0.00 0.00 2.83
52 53 1.142965 GGTTTTTGGGTGCGCTTGT 59.857 52.632 9.73 0.00 0.00 3.16
53 54 0.179086 AAGGTTTTTGGGTGCGCTTG 60.179 50.000 9.73 0.00 0.00 4.01
54 55 0.179086 CAAGGTTTTTGGGTGCGCTT 60.179 50.000 9.73 0.00 0.00 4.68
55 56 1.040339 TCAAGGTTTTTGGGTGCGCT 61.040 50.000 9.73 0.00 0.00 5.92
56 57 0.179097 TTCAAGGTTTTTGGGTGCGC 60.179 50.000 0.00 0.00 0.00 6.09
57 58 2.301577 TTTCAAGGTTTTTGGGTGCG 57.698 45.000 0.00 0.00 0.00 5.34
58 59 3.944650 ACATTTTCAAGGTTTTTGGGTGC 59.055 39.130 0.00 0.00 0.00 5.01
59 60 8.894768 TTATACATTTTCAAGGTTTTTGGGTG 57.105 30.769 0.00 0.00 0.00 4.61
60 61 9.719355 GATTATACATTTTCAAGGTTTTTGGGT 57.281 29.630 0.00 0.00 0.00 4.51
61 62 9.717942 TGATTATACATTTTCAAGGTTTTTGGG 57.282 29.630 0.00 0.00 0.00 4.12
66 67 9.927668 CAACCTGATTATACATTTTCAAGGTTT 57.072 29.630 0.00 0.00 32.38 3.27
67 68 9.088987 ACAACCTGATTATACATTTTCAAGGTT 57.911 29.630 0.00 0.00 33.67 3.50
68 69 8.650143 ACAACCTGATTATACATTTTCAAGGT 57.350 30.769 0.00 0.00 0.00 3.50
69 70 9.573133 GAACAACCTGATTATACATTTTCAAGG 57.427 33.333 0.00 0.00 0.00 3.61
78 79 9.613428 CTCCTTAATGAACAACCTGATTATACA 57.387 33.333 0.00 0.00 0.00 2.29
79 80 9.832445 TCTCCTTAATGAACAACCTGATTATAC 57.168 33.333 0.00 0.00 0.00 1.47
81 82 9.178758 GTTCTCCTTAATGAACAACCTGATTAT 57.821 33.333 9.70 0.00 41.35 1.28
82 83 7.610305 GGTTCTCCTTAATGAACAACCTGATTA 59.390 37.037 14.04 0.00 42.91 1.75
83 84 6.434340 GGTTCTCCTTAATGAACAACCTGATT 59.566 38.462 14.04 0.00 42.91 2.57
84 85 5.946377 GGTTCTCCTTAATGAACAACCTGAT 59.054 40.000 14.04 0.00 42.91 2.90
85 86 5.073144 AGGTTCTCCTTAATGAACAACCTGA 59.927 40.000 16.73 0.00 42.12 3.86
86 87 5.182001 CAGGTTCTCCTTAATGAACAACCTG 59.818 44.000 23.02 23.02 42.80 4.00
87 88 5.073144 TCAGGTTCTCCTTAATGAACAACCT 59.927 40.000 13.76 13.76 43.07 3.50
88 89 5.313712 TCAGGTTCTCCTTAATGAACAACC 58.686 41.667 14.04 12.47 43.07 3.77
89 90 6.877611 TTCAGGTTCTCCTTAATGAACAAC 57.122 37.500 14.04 6.25 43.07 3.32
95 96 5.116084 TCCCATTCAGGTTCTCCTTAATG 57.884 43.478 11.83 11.83 46.68 1.90
96 97 4.790790 ACTCCCATTCAGGTTCTCCTTAAT 59.209 41.667 0.00 0.00 43.07 1.40
97 98 4.175962 ACTCCCATTCAGGTTCTCCTTAA 58.824 43.478 0.00 0.00 43.07 1.85
98 99 3.775316 GACTCCCATTCAGGTTCTCCTTA 59.225 47.826 0.00 0.00 43.07 2.69
99 100 2.573915 GACTCCCATTCAGGTTCTCCTT 59.426 50.000 0.00 0.00 43.07 3.36
100 101 2.192263 GACTCCCATTCAGGTTCTCCT 58.808 52.381 0.00 0.00 46.37 3.69
101 102 2.192263 AGACTCCCATTCAGGTTCTCC 58.808 52.381 0.00 0.00 34.66 3.71
102 103 3.261897 TGAAGACTCCCATTCAGGTTCTC 59.738 47.826 0.00 0.00 34.66 2.87
103 104 3.251484 TGAAGACTCCCATTCAGGTTCT 58.749 45.455 0.00 0.00 34.66 3.01
104 105 3.703001 TGAAGACTCCCATTCAGGTTC 57.297 47.619 0.00 0.00 34.66 3.62
105 106 3.331889 ACATGAAGACTCCCATTCAGGTT 59.668 43.478 0.00 0.00 45.21 3.50
106 107 2.915604 ACATGAAGACTCCCATTCAGGT 59.084 45.455 0.00 0.00 43.39 4.00
107 108 3.641434 ACATGAAGACTCCCATTCAGG 57.359 47.619 0.00 0.00 41.62 3.86
108 109 4.582869 TGAACATGAAGACTCCCATTCAG 58.417 43.478 0.00 0.00 38.72 3.02
109 110 4.639078 TGAACATGAAGACTCCCATTCA 57.361 40.909 0.00 0.00 39.59 2.57
110 111 5.123027 GTCTTGAACATGAAGACTCCCATTC 59.877 44.000 15.18 0.00 44.02 2.67
111 112 5.006386 GTCTTGAACATGAAGACTCCCATT 58.994 41.667 15.18 0.00 44.02 3.16
112 113 4.042062 TGTCTTGAACATGAAGACTCCCAT 59.958 41.667 20.36 0.00 46.42 4.00
113 114 3.390967 TGTCTTGAACATGAAGACTCCCA 59.609 43.478 20.36 4.31 46.42 4.37
114 115 3.748568 GTGTCTTGAACATGAAGACTCCC 59.251 47.826 20.36 9.52 46.42 4.30
115 116 3.430218 CGTGTCTTGAACATGAAGACTCC 59.570 47.826 20.36 12.92 46.13 3.85
116 117 4.637574 CGTGTCTTGAACATGAAGACTC 57.362 45.455 20.36 16.96 46.13 3.36
123 124 1.270839 ACCCCTCGTGTCTTGAACATG 60.271 52.381 0.00 0.00 44.84 3.21
124 125 1.056660 ACCCCTCGTGTCTTGAACAT 58.943 50.000 0.00 0.00 40.80 2.71
125 126 0.105964 CACCCCTCGTGTCTTGAACA 59.894 55.000 0.00 0.00 37.73 3.18
126 127 2.914379 CACCCCTCGTGTCTTGAAC 58.086 57.895 0.00 0.00 37.73 3.18
135 136 1.833787 ATAAACCGCACACCCCTCGT 61.834 55.000 0.00 0.00 0.00 4.18
136 137 1.078708 ATAAACCGCACACCCCTCG 60.079 57.895 0.00 0.00 0.00 4.63
137 138 0.035820 TCATAAACCGCACACCCCTC 60.036 55.000 0.00 0.00 0.00 4.30
138 139 0.035439 CTCATAAACCGCACACCCCT 60.035 55.000 0.00 0.00 0.00 4.79
139 140 0.035820 TCTCATAAACCGCACACCCC 60.036 55.000 0.00 0.00 0.00 4.95
140 141 1.816074 TTCTCATAAACCGCACACCC 58.184 50.000 0.00 0.00 0.00 4.61
141 142 3.003897 TGTTTTCTCATAAACCGCACACC 59.996 43.478 0.00 0.00 37.24 4.16
142 143 4.217754 TGTTTTCTCATAAACCGCACAC 57.782 40.909 0.00 0.00 37.24 3.82
143 144 4.793071 CATGTTTTCTCATAAACCGCACA 58.207 39.130 0.00 0.00 37.24 4.57
144 145 3.608073 GCATGTTTTCTCATAAACCGCAC 59.392 43.478 0.00 0.00 37.24 5.34
145 146 3.254411 TGCATGTTTTCTCATAAACCGCA 59.746 39.130 0.00 0.00 40.27 5.69
146 147 3.832276 TGCATGTTTTCTCATAAACCGC 58.168 40.909 0.00 0.00 37.24 5.68
147 148 4.853196 CACTGCATGTTTTCTCATAAACCG 59.147 41.667 0.00 0.00 37.24 4.44
148 149 5.163513 CCACTGCATGTTTTCTCATAAACC 58.836 41.667 0.00 0.00 37.24 3.27
149 150 5.630680 CACCACTGCATGTTTTCTCATAAAC 59.369 40.000 0.00 0.00 38.26 2.01
150 151 5.534278 TCACCACTGCATGTTTTCTCATAAA 59.466 36.000 0.00 0.00 0.00 1.40
151 152 5.069318 TCACCACTGCATGTTTTCTCATAA 58.931 37.500 0.00 0.00 0.00 1.90
152 153 4.650734 TCACCACTGCATGTTTTCTCATA 58.349 39.130 0.00 0.00 0.00 2.15
153 154 3.489355 TCACCACTGCATGTTTTCTCAT 58.511 40.909 0.00 0.00 0.00 2.90
154 155 2.929641 TCACCACTGCATGTTTTCTCA 58.070 42.857 0.00 0.00 0.00 3.27
155 156 3.988379 TTCACCACTGCATGTTTTCTC 57.012 42.857 0.00 0.00 0.00 2.87
156 157 3.491447 GCTTTCACCACTGCATGTTTTCT 60.491 43.478 0.00 0.00 0.00 2.52
157 158 2.796593 GCTTTCACCACTGCATGTTTTC 59.203 45.455 0.00 0.00 0.00 2.29
158 159 2.168106 TGCTTTCACCACTGCATGTTTT 59.832 40.909 0.00 0.00 0.00 2.43
159 160 1.755959 TGCTTTCACCACTGCATGTTT 59.244 42.857 0.00 0.00 0.00 2.83
160 161 1.401761 TGCTTTCACCACTGCATGTT 58.598 45.000 0.00 0.00 0.00 2.71
161 162 1.542915 GATGCTTTCACCACTGCATGT 59.457 47.619 3.98 0.00 44.80 3.21
162 163 1.542472 TGATGCTTTCACCACTGCATG 59.458 47.619 3.98 0.00 44.80 4.06
164 165 3.418022 TGATGCTTTCACCACTGCA 57.582 47.368 0.00 0.00 39.83 4.41
172 173 4.143543 TCATTCTTGGTGTGATGCTTTCA 58.856 39.130 0.00 0.00 0.00 2.69
173 174 4.771590 TCATTCTTGGTGTGATGCTTTC 57.228 40.909 0.00 0.00 0.00 2.62
174 175 5.291971 GTTTCATTCTTGGTGTGATGCTTT 58.708 37.500 0.00 0.00 0.00 3.51
175 176 4.557296 CGTTTCATTCTTGGTGTGATGCTT 60.557 41.667 0.00 0.00 0.00 3.91
176 177 3.058016 CGTTTCATTCTTGGTGTGATGCT 60.058 43.478 0.00 0.00 0.00 3.79
177 178 3.236816 CGTTTCATTCTTGGTGTGATGC 58.763 45.455 0.00 0.00 0.00 3.91
178 179 3.501828 TCCGTTTCATTCTTGGTGTGATG 59.498 43.478 0.00 0.00 0.00 3.07
179 180 3.750371 TCCGTTTCATTCTTGGTGTGAT 58.250 40.909 0.00 0.00 0.00 3.06
180 181 3.201353 TCCGTTTCATTCTTGGTGTGA 57.799 42.857 0.00 0.00 0.00 3.58
181 182 3.550030 GGTTCCGTTTCATTCTTGGTGTG 60.550 47.826 0.00 0.00 0.00 3.82
182 183 2.621526 GGTTCCGTTTCATTCTTGGTGT 59.378 45.455 0.00 0.00 0.00 4.16
183 184 2.350388 CGGTTCCGTTTCATTCTTGGTG 60.350 50.000 2.82 0.00 0.00 4.17
184 185 1.877443 CGGTTCCGTTTCATTCTTGGT 59.123 47.619 2.82 0.00 0.00 3.67
185 186 2.147958 TCGGTTCCGTTTCATTCTTGG 58.852 47.619 11.04 0.00 0.00 3.61
186 187 3.747193 CATCGGTTCCGTTTCATTCTTG 58.253 45.455 11.04 0.00 0.00 3.02
187 188 2.161609 GCATCGGTTCCGTTTCATTCTT 59.838 45.455 11.04 0.00 0.00 2.52
188 189 1.737793 GCATCGGTTCCGTTTCATTCT 59.262 47.619 11.04 0.00 0.00 2.40
189 190 1.466950 TGCATCGGTTCCGTTTCATTC 59.533 47.619 11.04 0.00 0.00 2.67
190 191 1.529226 TGCATCGGTTCCGTTTCATT 58.471 45.000 11.04 0.00 0.00 2.57
191 192 1.401552 CATGCATCGGTTCCGTTTCAT 59.598 47.619 11.04 6.41 0.00 2.57
192 193 0.801872 CATGCATCGGTTCCGTTTCA 59.198 50.000 11.04 4.32 0.00 2.69
193 194 0.098728 CCATGCATCGGTTCCGTTTC 59.901 55.000 11.04 0.00 0.00 2.78
194 195 1.312371 CCCATGCATCGGTTCCGTTT 61.312 55.000 11.04 0.00 0.00 3.60
195 196 1.748879 CCCATGCATCGGTTCCGTT 60.749 57.895 11.04 0.00 0.00 4.44
196 197 2.124736 CCCATGCATCGGTTCCGT 60.125 61.111 11.04 0.00 0.00 4.69
197 198 3.585990 GCCCATGCATCGGTTCCG 61.586 66.667 12.26 4.74 37.47 4.30
198 199 3.219198 GGCCCATGCATCGGTTCC 61.219 66.667 12.26 1.76 40.13 3.62
199 200 1.603236 TTTGGCCCATGCATCGGTTC 61.603 55.000 12.26 5.66 40.13 3.62
200 201 1.190833 TTTTGGCCCATGCATCGGTT 61.191 50.000 12.26 0.00 40.13 4.44
201 202 1.606885 CTTTTGGCCCATGCATCGGT 61.607 55.000 12.26 0.00 40.13 4.69
202 203 1.142314 CTTTTGGCCCATGCATCGG 59.858 57.895 5.89 5.89 40.13 4.18
203 204 0.101759 CTCTTTTGGCCCATGCATCG 59.898 55.000 0.00 0.00 40.13 3.84
204 205 1.188863 ACTCTTTTGGCCCATGCATC 58.811 50.000 0.00 0.00 40.13 3.91
205 206 2.530460 TACTCTTTTGGCCCATGCAT 57.470 45.000 0.00 0.00 40.13 3.96
206 207 2.170166 CTTACTCTTTTGGCCCATGCA 58.830 47.619 0.00 0.00 40.13 3.96
207 208 2.164422 GTCTTACTCTTTTGGCCCATGC 59.836 50.000 0.00 0.00 0.00 4.06
208 209 2.755103 GGTCTTACTCTTTTGGCCCATG 59.245 50.000 0.00 0.00 0.00 3.66
209 210 2.378547 TGGTCTTACTCTTTTGGCCCAT 59.621 45.455 0.00 0.00 0.00 4.00
210 211 1.777878 TGGTCTTACTCTTTTGGCCCA 59.222 47.619 0.00 0.00 0.00 5.36
211 212 2.224793 ACTGGTCTTACTCTTTTGGCCC 60.225 50.000 0.00 0.00 0.00 5.80
212 213 3.141767 ACTGGTCTTACTCTTTTGGCC 57.858 47.619 0.00 0.00 0.00 5.36
213 214 4.578928 TGAAACTGGTCTTACTCTTTTGGC 59.421 41.667 0.00 0.00 0.00 4.52
214 215 6.094881 TGTTGAAACTGGTCTTACTCTTTTGG 59.905 38.462 0.00 0.00 0.00 3.28
215 216 7.083875 TGTTGAAACTGGTCTTACTCTTTTG 57.916 36.000 0.00 0.00 0.00 2.44
216 217 7.696992 TTGTTGAAACTGGTCTTACTCTTTT 57.303 32.000 0.00 0.00 0.00 2.27
217 218 7.339466 ACATTGTTGAAACTGGTCTTACTCTTT 59.661 33.333 0.00 0.00 0.00 2.52
218 219 6.828785 ACATTGTTGAAACTGGTCTTACTCTT 59.171 34.615 0.00 0.00 0.00 2.85
219 220 6.260936 CACATTGTTGAAACTGGTCTTACTCT 59.739 38.462 0.00 0.00 0.00 3.24
220 221 6.260050 TCACATTGTTGAAACTGGTCTTACTC 59.740 38.462 0.00 0.00 0.00 2.59
221 222 6.038271 GTCACATTGTTGAAACTGGTCTTACT 59.962 38.462 0.00 0.00 0.00 2.24
222 223 6.199393 GTCACATTGTTGAAACTGGTCTTAC 58.801 40.000 0.00 0.00 0.00 2.34
223 224 5.007234 CGTCACATTGTTGAAACTGGTCTTA 59.993 40.000 0.00 0.00 0.00 2.10
224 225 4.201910 CGTCACATTGTTGAAACTGGTCTT 60.202 41.667 0.00 0.00 0.00 3.01
225 226 3.312421 CGTCACATTGTTGAAACTGGTCT 59.688 43.478 0.00 0.00 0.00 3.85
226 227 3.311322 TCGTCACATTGTTGAAACTGGTC 59.689 43.478 0.00 0.00 0.00 4.02
227 228 3.275143 TCGTCACATTGTTGAAACTGGT 58.725 40.909 0.00 0.00 0.00 4.00
228 229 3.961477 TCGTCACATTGTTGAAACTGG 57.039 42.857 0.00 0.00 0.00 4.00
229 230 3.665409 GCATCGTCACATTGTTGAAACTG 59.335 43.478 0.00 0.00 0.00 3.16
230 231 3.565482 AGCATCGTCACATTGTTGAAACT 59.435 39.130 0.00 0.00 0.00 2.66
231 232 3.888934 AGCATCGTCACATTGTTGAAAC 58.111 40.909 0.00 0.00 0.00 2.78
232 233 4.566545 AAGCATCGTCACATTGTTGAAA 57.433 36.364 0.00 0.00 0.00 2.69
233 234 4.376920 CGTAAGCATCGTCACATTGTTGAA 60.377 41.667 0.00 0.00 0.00 2.69
234 235 3.122780 CGTAAGCATCGTCACATTGTTGA 59.877 43.478 0.00 0.00 0.00 3.18
235 236 3.120683 ACGTAAGCATCGTCACATTGTTG 60.121 43.478 0.00 0.00 45.62 3.33
236 237 3.064207 ACGTAAGCATCGTCACATTGTT 58.936 40.909 0.00 0.00 45.62 2.83
237 238 2.683968 ACGTAAGCATCGTCACATTGT 58.316 42.857 0.00 0.00 45.62 2.71
238 239 3.659735 GAACGTAAGCATCGTCACATTG 58.340 45.455 0.00 0.00 40.69 2.82
239 240 2.344441 CGAACGTAAGCATCGTCACATT 59.656 45.455 0.00 0.00 42.72 2.71
240 241 1.917955 CGAACGTAAGCATCGTCACAT 59.082 47.619 0.00 0.00 42.72 3.21
241 242 1.069091 TCGAACGTAAGCATCGTCACA 60.069 47.619 6.49 0.00 46.23 3.58
242 243 1.316735 GTCGAACGTAAGCATCGTCAC 59.683 52.381 6.49 0.00 46.23 3.67
243 244 1.069091 TGTCGAACGTAAGCATCGTCA 60.069 47.619 6.49 4.73 46.23 4.35
244 245 1.578023 CTGTCGAACGTAAGCATCGTC 59.422 52.381 6.49 2.26 46.23 4.20
245 246 1.198408 TCTGTCGAACGTAAGCATCGT 59.802 47.619 6.49 0.00 46.23 3.73
247 248 3.619751 GTTCTGTCGAACGTAAGCATC 57.380 47.619 0.00 0.00 40.05 3.91
263 264 6.149973 CACATACACATCAACAGAATGGTTCT 59.850 38.462 0.00 0.00 43.62 3.01
264 265 6.317088 CACATACACATCAACAGAATGGTTC 58.683 40.000 0.00 0.00 43.62 3.62
265 266 5.183713 CCACATACACATCAACAGAATGGTT 59.816 40.000 0.00 0.00 43.62 3.67
266 267 4.701651 CCACATACACATCAACAGAATGGT 59.298 41.667 0.00 0.00 43.62 3.55
267 268 4.943093 TCCACATACACATCAACAGAATGG 59.057 41.667 0.00 0.00 43.62 3.16
268 269 5.412286 TGTCCACATACACATCAACAGAATG 59.588 40.000 0.00 0.00 46.00 2.67
269 270 5.559770 TGTCCACATACACATCAACAGAAT 58.440 37.500 0.00 0.00 0.00 2.40
270 271 4.967036 TGTCCACATACACATCAACAGAA 58.033 39.130 0.00 0.00 0.00 3.02
271 272 4.615588 TGTCCACATACACATCAACAGA 57.384 40.909 0.00 0.00 0.00 3.41
272 273 4.437794 GCATGTCCACATACACATCAACAG 60.438 45.833 0.00 0.00 34.26 3.16
273 274 3.439825 GCATGTCCACATACACATCAACA 59.560 43.478 0.00 0.00 34.26 3.33
274 275 3.691118 AGCATGTCCACATACACATCAAC 59.309 43.478 0.00 0.00 34.26 3.18
275 276 3.954200 AGCATGTCCACATACACATCAA 58.046 40.909 0.00 0.00 34.26 2.57
276 277 3.632643 AGCATGTCCACATACACATCA 57.367 42.857 0.00 0.00 34.26 3.07
277 278 5.502382 CGTTTAGCATGTCCACATACACATC 60.502 44.000 0.00 0.00 34.26 3.06
278 279 4.332543 CGTTTAGCATGTCCACATACACAT 59.667 41.667 0.00 0.00 34.26 3.21
279 280 3.682377 CGTTTAGCATGTCCACATACACA 59.318 43.478 0.00 0.00 34.26 3.72
280 281 3.063452 CCGTTTAGCATGTCCACATACAC 59.937 47.826 0.00 0.00 34.26 2.90
281 282 3.266636 CCGTTTAGCATGTCCACATACA 58.733 45.455 0.00 0.00 34.26 2.29
282 283 3.063452 CACCGTTTAGCATGTCCACATAC 59.937 47.826 0.00 0.00 34.26 2.39
283 284 3.055747 TCACCGTTTAGCATGTCCACATA 60.056 43.478 0.00 0.00 34.26 2.29
284 285 2.083774 CACCGTTTAGCATGTCCACAT 58.916 47.619 0.00 0.00 36.96 3.21
285 286 1.070914 TCACCGTTTAGCATGTCCACA 59.929 47.619 0.00 0.00 0.00 4.17
286 287 1.732259 CTCACCGTTTAGCATGTCCAC 59.268 52.381 0.00 0.00 0.00 4.02
287 288 1.943968 GCTCACCGTTTAGCATGTCCA 60.944 52.381 0.00 0.00 38.63 4.02
288 289 0.727398 GCTCACCGTTTAGCATGTCC 59.273 55.000 0.00 0.00 38.63 4.02
289 290 0.370273 CGCTCACCGTTTAGCATGTC 59.630 55.000 0.00 0.00 38.70 3.06
290 291 0.037697 TCGCTCACCGTTTAGCATGT 60.038 50.000 0.00 0.00 38.70 3.21
291 292 1.258982 GATCGCTCACCGTTTAGCATG 59.741 52.381 0.00 0.00 38.70 4.06
292 293 1.571919 GATCGCTCACCGTTTAGCAT 58.428 50.000 0.00 0.00 38.70 3.79
293 294 0.459585 GGATCGCTCACCGTTTAGCA 60.460 55.000 0.00 0.00 38.70 3.49
294 295 1.152383 GGGATCGCTCACCGTTTAGC 61.152 60.000 1.84 0.00 38.35 3.09
295 296 0.174845 TGGGATCGCTCACCGTTTAG 59.825 55.000 11.46 0.00 38.35 1.85
296 297 0.609151 TTGGGATCGCTCACCGTTTA 59.391 50.000 11.46 0.00 38.35 2.01
297 298 0.673644 CTTGGGATCGCTCACCGTTT 60.674 55.000 11.46 0.00 38.35 3.60
298 299 1.079127 CTTGGGATCGCTCACCGTT 60.079 57.895 11.46 0.00 38.35 4.44
299 300 2.579201 CTTGGGATCGCTCACCGT 59.421 61.111 11.46 0.00 38.35 4.83
300 301 2.892425 GCTTGGGATCGCTCACCG 60.892 66.667 11.46 0.00 38.61 4.94
301 302 2.892425 CGCTTGGGATCGCTCACC 60.892 66.667 11.46 0.00 0.00 4.02
302 303 2.167861 GTCGCTTGGGATCGCTCAC 61.168 63.158 11.46 0.00 0.00 3.51
303 304 2.184322 GTCGCTTGGGATCGCTCA 59.816 61.111 11.46 0.00 0.00 4.26
304 305 1.880340 CAGTCGCTTGGGATCGCTC 60.880 63.158 11.46 0.00 0.00 5.03
305 306 1.888436 TTCAGTCGCTTGGGATCGCT 61.888 55.000 11.46 0.00 0.00 4.93
306 307 1.019278 TTTCAGTCGCTTGGGATCGC 61.019 55.000 2.14 2.14 0.00 4.58
307 308 1.438651 TTTTCAGTCGCTTGGGATCG 58.561 50.000 0.00 0.00 0.00 3.69
324 325 2.650322 TCGCAACCTCAACTCCTTTTT 58.350 42.857 0.00 0.00 0.00 1.94
325 326 2.341846 TCGCAACCTCAACTCCTTTT 57.658 45.000 0.00 0.00 0.00 2.27
326 327 2.568623 ATCGCAACCTCAACTCCTTT 57.431 45.000 0.00 0.00 0.00 3.11
327 328 2.567615 AGTATCGCAACCTCAACTCCTT 59.432 45.455 0.00 0.00 0.00 3.36
328 329 2.166664 GAGTATCGCAACCTCAACTCCT 59.833 50.000 0.00 0.00 0.00 3.69
329 330 2.541556 GAGTATCGCAACCTCAACTCC 58.458 52.381 0.00 0.00 0.00 3.85
394 395 8.103305 ACAGTACAAAATCAGTATCATCAGGTT 58.897 33.333 0.00 0.00 0.00 3.50
396 397 7.765819 TCACAGTACAAAATCAGTATCATCAGG 59.234 37.037 0.00 0.00 0.00 3.86
397 398 8.707938 TCACAGTACAAAATCAGTATCATCAG 57.292 34.615 0.00 0.00 0.00 2.90
398 399 9.671279 ATTCACAGTACAAAATCAGTATCATCA 57.329 29.630 0.00 0.00 0.00 3.07
399 400 9.926751 CATTCACAGTACAAAATCAGTATCATC 57.073 33.333 0.00 0.00 0.00 2.92
442 443 9.943163 GATTTCTAATCTCTAATGCCAAACTTC 57.057 33.333 0.00 0.00 0.00 3.01
443 444 9.692325 AGATTTCTAATCTCTAATGCCAAACTT 57.308 29.630 0.00 0.00 0.00 2.66
479 482 5.036117 ACCTCAGTTCTTTTTACTCTGCA 57.964 39.130 0.00 0.00 0.00 4.41
498 502 8.634444 CAGCTTTCAGTAGATATGTACTAACCT 58.366 37.037 11.90 0.00 31.73 3.50
503 507 6.127338 TGTGCAGCTTTCAGTAGATATGTACT 60.127 38.462 6.72 6.72 33.25 2.73
527 531 0.032540 TGATGGTCGAGCGATGGATG 59.967 55.000 10.46 0.00 0.00 3.51
549 553 6.480320 CGGAAGCTATAGCACTTCAAAACTAT 59.520 38.462 26.07 0.00 43.32 2.12
553 557 4.827692 TCGGAAGCTATAGCACTTCAAAA 58.172 39.130 26.07 8.62 43.32 2.44
557 561 4.244425 TGATCGGAAGCTATAGCACTTC 57.756 45.455 26.07 19.97 45.16 3.01
643 657 9.303537 GTAGGCACTCTTATCTTACTTTAACTG 57.696 37.037 0.00 0.00 41.75 3.16
650 664 8.716779 ACTACTAGTAGGCACTCTTATCTTACT 58.283 37.037 29.05 3.80 41.75 2.24
651 665 8.907222 ACTACTAGTAGGCACTCTTATCTTAC 57.093 38.462 29.05 0.00 41.75 2.34
658 672 9.917887 TTCTTATTACTACTAGTAGGCACTCTT 57.082 33.333 29.05 12.28 41.75 2.85
703 720 1.134699 ACGACGTACCTCTCCGTATCA 60.135 52.381 0.00 0.00 37.44 2.15
845 863 6.330278 TGACTTATAACGACAGAACTGATGG 58.670 40.000 8.87 0.39 0.00 3.51
904 923 0.616111 TCCAAGGAGGGAGCAGAGAC 60.616 60.000 0.00 0.00 38.24 3.36
909 928 1.045350 CGAGATCCAAGGAGGGAGCA 61.045 60.000 0.00 0.00 45.76 4.26
955 978 2.603560 GTGGAGCATCTACGTAAAGTGC 59.396 50.000 14.97 14.97 36.69 4.40
989 1012 2.035321 GGTAGCTCCATCTGTGAGTAGC 59.965 54.545 0.00 0.00 35.97 3.58
991 1014 3.671740 AGGTAGCTCCATCTGTGAGTA 57.328 47.619 0.00 0.00 39.02 2.59
994 1017 2.245028 AGGTAGGTAGCTCCATCTGTGA 59.755 50.000 0.00 0.00 39.02 3.58
995 1018 2.672098 AGGTAGGTAGCTCCATCTGTG 58.328 52.381 0.00 0.00 39.02 3.66
1043 1066 6.830324 TGTATTGGATGAGAAAGAAATGGAGG 59.170 38.462 0.00 0.00 0.00 4.30
1088 1111 3.944476 GCTTGAGCTTGAGGAGGAA 57.056 52.632 0.00 0.00 38.21 3.36
1119 1142 1.226323 GTGGTCGATCTCCGTGTCG 60.226 63.158 0.00 0.00 39.75 4.35
1127 1150 0.247736 GAACAGCTGGTGGTCGATCT 59.752 55.000 19.93 0.00 31.60 2.75
1147 1170 0.625849 TCCATTGGGAAGGAGAAGGC 59.374 55.000 2.09 0.00 41.32 4.35
1161 1184 1.142688 AGGTGGAGGTGGCTTCCATT 61.143 55.000 3.36 0.00 45.85 3.16
1216 1242 1.517257 GCACCGTCACGATCTCCTG 60.517 63.158 0.00 0.00 0.00 3.86
1272 1298 2.373735 GCGTATCGCGTGAACTACTA 57.626 50.000 5.77 0.00 44.55 1.82
1305 1331 4.215742 CGCTTCCGCACCCCGATA 62.216 66.667 0.00 0.00 40.02 2.92
1759 1797 1.340017 GGAGCTGCTGGTTCACCATAA 60.340 52.381 7.01 0.00 46.46 1.90
1999 2072 1.155889 CGGCTTGCATGTAGTGTGAA 58.844 50.000 1.14 0.00 0.00 3.18
2157 2231 6.320418 GGGTTCAATTCGGTTATAAATCTGGT 59.680 38.462 0.00 0.00 0.00 4.00
2355 2479 1.002257 CCACACCTGCCATACTGCA 60.002 57.895 0.00 0.00 39.37 4.41
2424 2548 1.220206 CTGAAGACCTGCCATCGCT 59.780 57.895 0.00 0.00 35.36 4.93
2580 2704 2.158957 GGACACGGCCATAGAAATCTCA 60.159 50.000 2.24 0.00 0.00 3.27
2660 2784 1.723542 GCATAGTGAGAATCCATCGCG 59.276 52.381 0.00 0.00 32.41 5.87
2669 2793 1.132453 CGTCGGACAGCATAGTGAGAA 59.868 52.381 9.10 0.00 0.00 2.87
2694 2818 2.972348 AGTGACCTCCACCTTAGTTGA 58.028 47.619 0.00 0.00 46.87 3.18



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.