Multiple sequence alignment - TraesCS4B01G311200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G311200 chr4B 100.000 3009 0 0 1 3009 601278606 601275598 0.000000e+00 5557.0
1 TraesCS4B01G311200 chr4B 82.579 729 52 41 1087 1775 601284944 601284251 9.360000e-160 573.0
2 TraesCS4B01G311200 chr4B 82.663 721 50 40 1096 1775 601306732 601306046 1.210000e-158 569.0
3 TraesCS4B01G311200 chr4B 77.919 788 92 42 297 1028 601285727 601284966 1.670000e-112 416.0
4 TraesCS4B01G311200 chr4B 94.554 202 11 0 1 202 167197463 167197262 2.250000e-81 313.0
5 TraesCS4B01G311200 chr4B 83.475 236 26 6 745 967 601307009 601306774 1.090000e-49 207.0
6 TraesCS4B01G311200 chr4D 91.801 1805 97 25 294 2056 477024606 477022811 0.000000e+00 2466.0
7 TraesCS4B01G311200 chr4D 80.981 836 54 46 1000 1780 477030778 477029993 1.570000e-157 566.0
8 TraesCS4B01G311200 chr4D 77.037 540 73 20 470 967 477031306 477030776 2.300000e-66 263.0
9 TraesCS4B01G311200 chr4D 96.842 95 2 1 208 301 477027751 477027657 1.120000e-34 158.0
10 TraesCS4B01G311200 chr4D 93.548 62 2 2 2819 2878 466247125 466247186 1.150000e-14 91.6
11 TraesCS4B01G311200 chr4A 80.535 1382 133 66 481 1775 683788433 683787101 0.000000e+00 937.0
12 TraesCS4B01G311200 chr4A 82.618 955 79 51 838 1780 683801512 683800633 0.000000e+00 763.0
13 TraesCS4B01G311200 chr4A 82.494 794 73 43 1000 1775 683806379 683805634 1.180000e-178 636.0
14 TraesCS4B01G311200 chr4A 78.401 963 109 55 786 1711 641502168 641503068 4.420000e-148 534.0
15 TraesCS4B01G311200 chr4A 94.059 202 12 0 1 202 211005193 211005394 1.050000e-79 307.0
16 TraesCS4B01G311200 chr4A 84.190 253 26 4 2566 2818 736036823 736037061 1.800000e-57 233.0
17 TraesCS4B01G311200 chr4A 82.812 128 17 4 1894 2017 683786006 683785880 3.170000e-20 110.0
18 TraesCS4B01G311200 chr5B 82.307 763 63 31 838 1548 669909903 669909161 2.000000e-166 595.0
19 TraesCS4B01G311200 chr5B 99.248 133 1 0 2877 3009 552820295 552820427 1.080000e-59 241.0
20 TraesCS4B01G311200 chr5B 96.825 63 1 1 2817 2878 584701740 584701802 1.480000e-18 104.0
21 TraesCS4B01G311200 chr5B 96.552 58 2 0 2819 2876 638448423 638448480 2.470000e-16 97.1
22 TraesCS4B01G311200 chr3D 93.963 381 23 0 2428 2808 41419365 41418985 7.230000e-161 577.0
23 TraesCS4B01G311200 chr3D 92.617 298 22 0 2057 2354 41419654 41419357 2.140000e-116 429.0
24 TraesCS4B01G311200 chr3D 93.564 202 13 0 1 202 439204346 439204547 4.870000e-78 302.0
25 TraesCS4B01G311200 chr3D 92.754 207 15 0 1 207 508326877 508327083 1.750000e-77 300.0
26 TraesCS4B01G311200 chr3D 96.667 60 2 0 2819 2878 41417970 41417911 1.910000e-17 100.0
27 TraesCS4B01G311200 chr2B 88.776 294 25 2 2452 2744 206358293 206358579 1.330000e-93 353.0
28 TraesCS4B01G311200 chr2B 99.248 133 1 0 2877 3009 589543235 589543367 1.080000e-59 241.0
29 TraesCS4B01G311200 chr2B 98.529 136 1 1 2874 3009 785818466 785818332 3.880000e-59 239.0
30 TraesCS4B01G311200 chr2B 78.689 366 70 7 2056 2417 206357937 206358298 1.390000e-58 237.0
31 TraesCS4B01G311200 chr2B 78.862 369 58 16 2059 2417 206368074 206367716 6.490000e-57 231.0
32 TraesCS4B01G311200 chr2B 96.721 61 1 1 2819 2878 107914371 107914431 1.910000e-17 100.0
33 TraesCS4B01G311200 chr7B 94.975 199 10 0 1 199 260824619 260824817 2.250000e-81 313.0
34 TraesCS4B01G311200 chr7B 99.248 133 1 0 2877 3009 639025522 639025390 1.080000e-59 241.0
35 TraesCS4B01G311200 chr7B 95.890 146 6 0 2864 3009 96403457 96403602 1.390000e-58 237.0
36 TraesCS4B01G311200 chr6B 91.818 220 17 1 2600 2818 693902624 693902405 3.770000e-79 305.0
37 TraesCS4B01G311200 chr6B 93.069 202 14 0 1 202 557792281 557792080 2.270000e-76 296.0
38 TraesCS4B01G311200 chr6B 85.328 259 29 8 2563 2818 280298060 280298312 2.980000e-65 259.0
39 TraesCS4B01G311200 chr6B 97.810 137 3 0 2873 3009 635226993 635226857 1.390000e-58 237.0
40 TraesCS4B01G311200 chr7D 93.564 202 13 0 1 202 365298340 365298541 4.870000e-78 302.0
41 TraesCS4B01G311200 chr7D 91.388 209 16 2 2610 2818 121657342 121657136 4.910000e-73 285.0
42 TraesCS4B01G311200 chr2D 93.069 202 14 0 1 202 602339018 602338817 2.270000e-76 296.0
43 TraesCS4B01G311200 chr2D 76.378 381 78 12 2057 2432 194677879 194678252 8.510000e-46 195.0
44 TraesCS4B01G311200 chr2D 75.781 384 73 20 2057 2432 630014667 630014296 3.080000e-40 176.0
45 TraesCS4B01G311200 chr2D 77.258 299 60 8 2057 2351 578644475 578644769 5.160000e-38 169.0
46 TraesCS4B01G311200 chr1B 93.069 202 14 0 1 202 479581771 479581570 2.270000e-76 296.0
47 TraesCS4B01G311200 chr1B 99.248 133 1 0 2877 3009 540809726 540809858 1.080000e-59 241.0
48 TraesCS4B01G311200 chr3B 85.375 253 23 5 2566 2818 546886144 546886382 1.790000e-62 250.0
49 TraesCS4B01G311200 chr3B 99.248 133 1 0 2877 3009 777854 777722 1.080000e-59 241.0
50 TraesCS4B01G311200 chr3B 84.585 253 25 3 2566 2818 642467748 642467510 3.880000e-59 239.0
51 TraesCS4B01G311200 chr2A 88.038 209 23 1 2610 2818 137559363 137559569 2.320000e-61 246.0
52 TraesCS4B01G311200 chr2A 84.615 130 10 2 2690 2818 550351082 550351202 1.470000e-23 121.0
53 TraesCS4B01G311200 chr5D 93.082 159 10 1 2661 2818 44484767 44484925 6.490000e-57 231.0
54 TraesCS4B01G311200 chr3A 92.405 158 10 2 2853 3009 620862013 620861857 1.090000e-54 224.0
55 TraesCS4B01G311200 chr5A 84.581 227 24 6 2563 2785 2222676 2222457 6.530000e-52 215.0
56 TraesCS4B01G311200 chr5A 75.515 388 69 20 2057 2432 522995379 522995006 1.860000e-37 167.0
57 TraesCS4B01G311200 chr5A 98.387 62 1 0 2817 2878 2222301 2222240 3.170000e-20 110.0
58 TraesCS4B01G311200 chr6D 77.095 358 74 7 2054 2407 226770049 226769696 1.830000e-47 200.0
59 TraesCS4B01G311200 chr6D 78.261 299 57 8 2057 2351 97224325 97224031 5.120000e-43 185.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G311200 chr4B 601275598 601278606 3008 True 5557.000000 5557 100.000000 1 3009 1 chr4B.!!$R2 3008
1 TraesCS4B01G311200 chr4B 601284251 601285727 1476 True 494.500000 573 80.249000 297 1775 2 chr4B.!!$R3 1478
2 TraesCS4B01G311200 chr4B 601306046 601307009 963 True 388.000000 569 83.069000 745 1775 2 chr4B.!!$R4 1030
3 TraesCS4B01G311200 chr4D 477022811 477031306 8495 True 863.250000 2466 86.665250 208 2056 4 chr4D.!!$R1 1848
4 TraesCS4B01G311200 chr4A 683800633 683801512 879 True 763.000000 763 82.618000 838 1780 1 chr4A.!!$R1 942
5 TraesCS4B01G311200 chr4A 683805634 683806379 745 True 636.000000 636 82.494000 1000 1775 1 chr4A.!!$R2 775
6 TraesCS4B01G311200 chr4A 641502168 641503068 900 False 534.000000 534 78.401000 786 1711 1 chr4A.!!$F2 925
7 TraesCS4B01G311200 chr4A 683785880 683788433 2553 True 523.500000 937 81.673500 481 2017 2 chr4A.!!$R3 1536
8 TraesCS4B01G311200 chr5B 669909161 669909903 742 True 595.000000 595 82.307000 838 1548 1 chr5B.!!$R1 710
9 TraesCS4B01G311200 chr3D 41417911 41419654 1743 True 368.666667 577 94.415667 2057 2878 3 chr3D.!!$R1 821
10 TraesCS4B01G311200 chr2B 206357937 206358579 642 False 295.000000 353 83.732500 2056 2744 2 chr2B.!!$F3 688

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
177 178 0.036294 GGTATTGCTCTATCCGCCCC 60.036 60.0 0.00 0.0 0.0 5.80 F
184 185 0.252284 CTCTATCCGCCCCATACCCT 60.252 60.0 0.00 0.0 0.0 4.34 F
290 291 0.253610 CAAACCCCGGCCTACATACA 59.746 55.0 0.00 0.0 0.0 2.29 F
515 531 0.611714 CCTAGTTACCGTGGCCAGTT 59.388 55.0 5.11 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1372 1571 0.179067 AACCAAAGACGTCGAGGCAA 60.179 50.0 19.41 0.0 0.00 4.52 R
1514 1743 0.241213 GCTCTCGTATCGCCTGCATA 59.759 55.0 0.00 0.0 0.00 3.14 R
1844 9176 0.456995 GTACAGTGGCGACAGAGAGC 60.457 60.0 0.00 0.0 44.46 4.09 R
2455 10564 0.620556 AGGGTCGCTGTCATTGGAAT 59.379 50.0 0.00 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 9.891828 TGTGAATAATTTGTGTACTGTTTGATC 57.108 29.630 0.00 0.00 0.00 2.92
41 42 9.959721 ATAATTTGTGTACTGTTTGATCTACCT 57.040 29.630 0.00 0.00 0.00 3.08
42 43 7.672983 ATTTGTGTACTGTTTGATCTACCTG 57.327 36.000 0.00 0.00 0.00 4.00
43 44 5.801531 TGTGTACTGTTTGATCTACCTGT 57.198 39.130 0.00 0.00 0.00 4.00
44 45 6.169557 TGTGTACTGTTTGATCTACCTGTT 57.830 37.500 0.00 0.00 0.00 3.16
45 46 5.989168 TGTGTACTGTTTGATCTACCTGTTG 59.011 40.000 0.00 0.00 0.00 3.33
46 47 5.408604 GTGTACTGTTTGATCTACCTGTTGG 59.591 44.000 0.00 0.00 39.83 3.77
47 48 4.021102 ACTGTTTGATCTACCTGTTGGG 57.979 45.455 0.00 0.00 41.89 4.12
85 86 2.723746 CCGTCGGGTATGGGTACG 59.276 66.667 2.34 0.00 0.00 3.67
86 87 2.723746 CGTCGGGTATGGGTACGG 59.276 66.667 0.00 0.00 0.00 4.02
87 88 2.848858 CGTCGGGTATGGGTACGGG 61.849 68.421 0.00 0.00 0.00 5.28
88 89 1.758122 GTCGGGTATGGGTACGGGT 60.758 63.158 0.00 0.00 0.00 5.28
89 90 0.467290 GTCGGGTATGGGTACGGGTA 60.467 60.000 0.00 0.00 0.00 3.69
90 91 0.260230 TCGGGTATGGGTACGGGTAA 59.740 55.000 0.00 0.00 0.00 2.85
91 92 1.118838 CGGGTATGGGTACGGGTAAA 58.881 55.000 0.00 0.00 0.00 2.01
92 93 1.069049 CGGGTATGGGTACGGGTAAAG 59.931 57.143 0.00 0.00 0.00 1.85
93 94 2.118679 GGGTATGGGTACGGGTAAAGT 58.881 52.381 0.00 0.00 0.00 2.66
94 95 3.304829 GGGTATGGGTACGGGTAAAGTA 58.695 50.000 0.00 0.00 0.00 2.24
95 96 3.903714 GGGTATGGGTACGGGTAAAGTAT 59.096 47.826 0.00 0.00 0.00 2.12
96 97 4.021104 GGGTATGGGTACGGGTAAAGTATC 60.021 50.000 0.00 0.00 0.00 2.24
97 98 4.588528 GGTATGGGTACGGGTAAAGTATCA 59.411 45.833 0.00 0.00 0.00 2.15
98 99 5.246883 GGTATGGGTACGGGTAAAGTATCAT 59.753 44.000 0.00 0.00 0.00 2.45
99 100 6.437162 GGTATGGGTACGGGTAAAGTATCATA 59.563 42.308 0.00 0.00 0.00 2.15
100 101 5.789643 TGGGTACGGGTAAAGTATCATAC 57.210 43.478 0.00 0.00 0.00 2.39
101 102 4.588528 TGGGTACGGGTAAAGTATCATACC 59.411 45.833 0.00 0.00 40.72 2.73
102 103 4.588528 GGGTACGGGTAAAGTATCATACCA 59.411 45.833 4.53 0.00 42.78 3.25
103 104 5.070313 GGGTACGGGTAAAGTATCATACCAA 59.930 44.000 4.53 0.00 42.78 3.67
104 105 5.985530 GGTACGGGTAAAGTATCATACCAAC 59.014 44.000 4.53 0.24 42.78 3.77
105 106 4.685924 ACGGGTAAAGTATCATACCAACG 58.314 43.478 4.53 2.60 42.78 4.10
106 107 4.053295 CGGGTAAAGTATCATACCAACGG 58.947 47.826 4.53 0.00 42.78 4.44
107 108 4.383173 GGGTAAAGTATCATACCAACGGG 58.617 47.826 4.53 0.00 42.78 5.28
119 120 2.543777 CCAACGGGTATGAGTATGGG 57.456 55.000 0.00 0.00 0.00 4.00
120 121 1.766496 CCAACGGGTATGAGTATGGGT 59.234 52.381 0.00 0.00 0.00 4.51
121 122 2.967201 CCAACGGGTATGAGTATGGGTA 59.033 50.000 0.00 0.00 0.00 3.69
122 123 3.006537 CCAACGGGTATGAGTATGGGTAG 59.993 52.174 0.00 0.00 0.00 3.18
123 124 3.889859 ACGGGTATGAGTATGGGTAGA 57.110 47.619 0.00 0.00 0.00 2.59
124 125 4.188937 ACGGGTATGAGTATGGGTAGAA 57.811 45.455 0.00 0.00 0.00 2.10
125 126 4.748701 ACGGGTATGAGTATGGGTAGAAT 58.251 43.478 0.00 0.00 0.00 2.40
126 127 5.152934 ACGGGTATGAGTATGGGTAGAATT 58.847 41.667 0.00 0.00 0.00 2.17
127 128 5.605488 ACGGGTATGAGTATGGGTAGAATTT 59.395 40.000 0.00 0.00 0.00 1.82
128 129 6.100714 ACGGGTATGAGTATGGGTAGAATTTT 59.899 38.462 0.00 0.00 0.00 1.82
129 130 6.426937 CGGGTATGAGTATGGGTAGAATTTTG 59.573 42.308 0.00 0.00 0.00 2.44
130 131 7.287810 GGGTATGAGTATGGGTAGAATTTTGT 58.712 38.462 0.00 0.00 0.00 2.83
131 132 8.434392 GGGTATGAGTATGGGTAGAATTTTGTA 58.566 37.037 0.00 0.00 0.00 2.41
132 133 9.269453 GGTATGAGTATGGGTAGAATTTTGTAC 57.731 37.037 0.00 0.00 0.00 2.90
133 134 9.269453 GTATGAGTATGGGTAGAATTTTGTACC 57.731 37.037 7.87 7.87 44.08 3.34
143 144 7.982224 GGTAGAATTTTGTACCCATTGACTAC 58.018 38.462 5.54 0.00 40.24 2.73
144 145 7.608761 GGTAGAATTTTGTACCCATTGACTACA 59.391 37.037 5.54 0.00 40.24 2.74
145 146 7.448748 AGAATTTTGTACCCATTGACTACAC 57.551 36.000 0.00 0.00 0.00 2.90
146 147 5.873179 ATTTTGTACCCATTGACTACACG 57.127 39.130 0.00 0.00 0.00 4.49
147 148 3.322211 TTGTACCCATTGACTACACGG 57.678 47.619 0.00 0.00 0.00 4.94
148 149 1.551430 TGTACCCATTGACTACACGGG 59.449 52.381 0.00 0.00 43.02 5.28
149 150 2.768046 ACCCATTGACTACACGGGT 58.232 52.632 0.00 0.00 45.53 5.28
152 153 2.833794 CCCATTGACTACACGGGTATG 58.166 52.381 0.00 0.00 31.80 2.39
153 154 2.484770 CCCATTGACTACACGGGTATGG 60.485 54.545 9.23 9.23 32.36 2.74
154 155 2.484770 CCATTGACTACACGGGTATGGG 60.485 54.545 8.44 0.00 30.25 4.00
155 156 1.941377 TTGACTACACGGGTATGGGT 58.059 50.000 0.00 0.00 0.00 4.51
156 157 2.824689 TGACTACACGGGTATGGGTA 57.175 50.000 0.00 0.00 0.00 3.69
157 158 3.317455 TGACTACACGGGTATGGGTAT 57.683 47.619 0.00 0.00 0.00 2.73
158 159 2.960384 TGACTACACGGGTATGGGTATG 59.040 50.000 0.00 0.00 0.00 2.39
159 160 2.298163 GACTACACGGGTATGGGTATGG 59.702 54.545 0.00 0.00 0.00 2.74
160 161 2.322658 CTACACGGGTATGGGTATGGT 58.677 52.381 0.00 0.00 0.00 3.55
161 162 2.475339 ACACGGGTATGGGTATGGTA 57.525 50.000 0.00 0.00 0.00 3.25
162 163 2.980548 ACACGGGTATGGGTATGGTAT 58.019 47.619 0.00 0.00 0.00 2.73
163 164 3.320129 ACACGGGTATGGGTATGGTATT 58.680 45.455 0.00 0.00 0.00 1.89
164 165 3.071892 ACACGGGTATGGGTATGGTATTG 59.928 47.826 0.00 0.00 0.00 1.90
165 166 2.039348 ACGGGTATGGGTATGGTATTGC 59.961 50.000 0.00 0.00 0.00 3.56
166 167 2.304761 CGGGTATGGGTATGGTATTGCT 59.695 50.000 0.00 0.00 0.00 3.91
167 168 3.618997 CGGGTATGGGTATGGTATTGCTC 60.619 52.174 0.00 0.00 0.00 4.26
168 169 3.587506 GGGTATGGGTATGGTATTGCTCT 59.412 47.826 0.00 0.00 0.00 4.09
169 170 4.781087 GGGTATGGGTATGGTATTGCTCTA 59.219 45.833 0.00 0.00 0.00 2.43
170 171 5.428783 GGGTATGGGTATGGTATTGCTCTAT 59.571 44.000 0.00 0.00 0.00 1.98
171 172 6.408206 GGGTATGGGTATGGTATTGCTCTATC 60.408 46.154 0.00 0.00 0.00 2.08
172 173 5.700402 ATGGGTATGGTATTGCTCTATCC 57.300 43.478 0.00 0.00 0.00 2.59
173 174 3.513912 TGGGTATGGTATTGCTCTATCCG 59.486 47.826 0.00 0.00 0.00 4.18
174 175 3.522553 GGTATGGTATTGCTCTATCCGC 58.477 50.000 0.00 0.00 0.00 5.54
175 176 2.770164 ATGGTATTGCTCTATCCGCC 57.230 50.000 0.00 0.00 0.00 6.13
176 177 0.685097 TGGTATTGCTCTATCCGCCC 59.315 55.000 0.00 0.00 0.00 6.13
177 178 0.036294 GGTATTGCTCTATCCGCCCC 60.036 60.000 0.00 0.00 0.00 5.80
178 179 0.685097 GTATTGCTCTATCCGCCCCA 59.315 55.000 0.00 0.00 0.00 4.96
179 180 1.279271 GTATTGCTCTATCCGCCCCAT 59.721 52.381 0.00 0.00 0.00 4.00
180 181 1.656587 ATTGCTCTATCCGCCCCATA 58.343 50.000 0.00 0.00 0.00 2.74
181 182 0.685097 TTGCTCTATCCGCCCCATAC 59.315 55.000 0.00 0.00 0.00 2.39
182 183 1.192146 TGCTCTATCCGCCCCATACC 61.192 60.000 0.00 0.00 0.00 2.73
183 184 1.900545 GCTCTATCCGCCCCATACCC 61.901 65.000 0.00 0.00 0.00 3.69
184 185 0.252284 CTCTATCCGCCCCATACCCT 60.252 60.000 0.00 0.00 0.00 4.34
185 186 1.006758 CTCTATCCGCCCCATACCCTA 59.993 57.143 0.00 0.00 0.00 3.53
186 187 1.649633 TCTATCCGCCCCATACCCTAT 59.350 52.381 0.00 0.00 0.00 2.57
187 188 2.040178 CTATCCGCCCCATACCCTATC 58.960 57.143 0.00 0.00 0.00 2.08
188 189 0.620700 ATCCGCCCCATACCCTATCC 60.621 60.000 0.00 0.00 0.00 2.59
189 190 1.537889 CCGCCCCATACCCTATCCA 60.538 63.158 0.00 0.00 0.00 3.41
190 191 0.914417 CCGCCCCATACCCTATCCAT 60.914 60.000 0.00 0.00 0.00 3.41
191 192 0.991920 CGCCCCATACCCTATCCATT 59.008 55.000 0.00 0.00 0.00 3.16
192 193 1.340017 CGCCCCATACCCTATCCATTG 60.340 57.143 0.00 0.00 0.00 2.82
193 194 1.616994 GCCCCATACCCTATCCATTGC 60.617 57.143 0.00 0.00 0.00 3.56
194 195 1.005924 CCCCATACCCTATCCATTGCC 59.994 57.143 0.00 0.00 0.00 4.52
195 196 1.710244 CCCATACCCTATCCATTGCCA 59.290 52.381 0.00 0.00 0.00 4.92
196 197 2.312741 CCCATACCCTATCCATTGCCAT 59.687 50.000 0.00 0.00 0.00 4.40
197 198 3.624777 CCATACCCTATCCATTGCCATC 58.375 50.000 0.00 0.00 0.00 3.51
198 199 3.624777 CATACCCTATCCATTGCCATCC 58.375 50.000 0.00 0.00 0.00 3.51
199 200 1.838611 ACCCTATCCATTGCCATCCT 58.161 50.000 0.00 0.00 0.00 3.24
200 201 2.146998 ACCCTATCCATTGCCATCCTT 58.853 47.619 0.00 0.00 0.00 3.36
201 202 3.335748 ACCCTATCCATTGCCATCCTTA 58.664 45.455 0.00 0.00 0.00 2.69
202 203 3.925370 ACCCTATCCATTGCCATCCTTAT 59.075 43.478 0.00 0.00 0.00 1.73
203 204 4.018050 ACCCTATCCATTGCCATCCTTATC 60.018 45.833 0.00 0.00 0.00 1.75
204 205 4.229123 CCCTATCCATTGCCATCCTTATCT 59.771 45.833 0.00 0.00 0.00 1.98
205 206 5.429762 CCCTATCCATTGCCATCCTTATCTA 59.570 44.000 0.00 0.00 0.00 1.98
206 207 6.409005 CCCTATCCATTGCCATCCTTATCTAG 60.409 46.154 0.00 0.00 0.00 2.43
207 208 6.385176 CCTATCCATTGCCATCCTTATCTAGA 59.615 42.308 0.00 0.00 0.00 2.43
208 209 6.708885 ATCCATTGCCATCCTTATCTAGAA 57.291 37.500 0.00 0.00 0.00 2.10
209 210 6.119240 TCCATTGCCATCCTTATCTAGAAG 57.881 41.667 0.00 0.00 0.00 2.85
210 211 5.013495 TCCATTGCCATCCTTATCTAGAAGG 59.987 44.000 4.29 4.29 46.48 3.46
211 212 4.982241 TTGCCATCCTTATCTAGAAGGG 57.018 45.455 10.08 6.64 45.35 3.95
212 213 3.941629 TGCCATCCTTATCTAGAAGGGT 58.058 45.455 10.08 0.72 45.35 4.34
213 214 4.307259 TGCCATCCTTATCTAGAAGGGTT 58.693 43.478 10.08 0.12 45.35 4.11
214 215 4.103153 TGCCATCCTTATCTAGAAGGGTTG 59.897 45.833 10.08 10.36 45.35 3.77
215 216 4.103311 GCCATCCTTATCTAGAAGGGTTGT 59.897 45.833 10.08 0.00 45.35 3.32
216 217 5.307196 GCCATCCTTATCTAGAAGGGTTGTA 59.693 44.000 10.08 0.00 45.35 2.41
217 218 6.183361 GCCATCCTTATCTAGAAGGGTTGTAA 60.183 42.308 10.08 0.00 45.35 2.41
218 219 7.637301 GCCATCCTTATCTAGAAGGGTTGTAAA 60.637 40.741 10.08 0.00 45.35 2.01
235 236 6.509418 TTGTAAACAAACTTCTCTGCAGTT 57.491 33.333 14.67 0.00 35.94 3.16
236 237 7.618502 TTGTAAACAAACTTCTCTGCAGTTA 57.381 32.000 14.67 0.00 33.12 2.24
237 238 7.618502 TGTAAACAAACTTCTCTGCAGTTAA 57.381 32.000 14.67 8.36 33.12 2.01
238 239 8.046294 TGTAAACAAACTTCTCTGCAGTTAAA 57.954 30.769 14.67 5.86 33.12 1.52
239 240 8.181573 TGTAAACAAACTTCTCTGCAGTTAAAG 58.818 33.333 14.67 16.67 33.12 1.85
240 241 5.175090 ACAAACTTCTCTGCAGTTAAAGC 57.825 39.130 14.67 0.00 33.12 3.51
241 242 4.884164 ACAAACTTCTCTGCAGTTAAAGCT 59.116 37.500 14.67 4.79 33.12 3.74
242 243 6.055588 ACAAACTTCTCTGCAGTTAAAGCTA 58.944 36.000 14.67 0.00 33.12 3.32
243 244 6.203723 ACAAACTTCTCTGCAGTTAAAGCTAG 59.796 38.462 14.67 7.01 33.12 3.42
244 245 5.476091 ACTTCTCTGCAGTTAAAGCTAGT 57.524 39.130 14.67 7.59 0.00 2.57
245 246 5.859495 ACTTCTCTGCAGTTAAAGCTAGTT 58.141 37.500 14.67 0.00 0.00 2.24
246 247 6.994221 ACTTCTCTGCAGTTAAAGCTAGTTA 58.006 36.000 14.67 0.00 0.00 2.24
247 248 7.616313 ACTTCTCTGCAGTTAAAGCTAGTTAT 58.384 34.615 14.67 0.00 0.00 1.89
248 249 8.097662 ACTTCTCTGCAGTTAAAGCTAGTTATT 58.902 33.333 14.67 0.00 0.00 1.40
249 250 8.848474 TTCTCTGCAGTTAAAGCTAGTTATTT 57.152 30.769 14.67 0.00 0.00 1.40
250 251 8.848474 TCTCTGCAGTTAAAGCTAGTTATTTT 57.152 30.769 14.67 0.00 0.00 1.82
251 252 9.284968 TCTCTGCAGTTAAAGCTAGTTATTTTT 57.715 29.630 14.67 0.00 0.00 1.94
252 253 9.548208 CTCTGCAGTTAAAGCTAGTTATTTTTC 57.452 33.333 14.67 0.00 0.00 2.29
253 254 9.284968 TCTGCAGTTAAAGCTAGTTATTTTTCT 57.715 29.630 14.67 0.00 0.00 2.52
254 255 9.899226 CTGCAGTTAAAGCTAGTTATTTTTCTT 57.101 29.630 5.25 0.00 0.00 2.52
272 273 7.811117 TTTTCTTATTCGAAAAGGAGGTTCA 57.189 32.000 0.00 0.00 37.81 3.18
273 274 7.811117 TTTCTTATTCGAAAAGGAGGTTCAA 57.189 32.000 0.00 0.00 30.49 2.69
274 275 7.811117 TTCTTATTCGAAAAGGAGGTTCAAA 57.189 32.000 0.00 0.00 0.00 2.69
275 276 7.198306 TCTTATTCGAAAAGGAGGTTCAAAC 57.802 36.000 0.00 0.00 0.00 2.93
284 285 2.758434 GGTTCAAACCCCGGCCTA 59.242 61.111 0.00 0.00 43.43 3.93
285 286 1.676635 GGTTCAAACCCCGGCCTAC 60.677 63.158 0.00 0.00 43.43 3.18
286 287 1.073548 GTTCAAACCCCGGCCTACA 59.926 57.895 0.00 0.00 0.00 2.74
287 288 0.323087 GTTCAAACCCCGGCCTACAT 60.323 55.000 0.00 0.00 0.00 2.29
288 289 1.065272 GTTCAAACCCCGGCCTACATA 60.065 52.381 0.00 0.00 0.00 2.29
289 290 0.542805 TCAAACCCCGGCCTACATAC 59.457 55.000 0.00 0.00 0.00 2.39
290 291 0.253610 CAAACCCCGGCCTACATACA 59.746 55.000 0.00 0.00 0.00 2.29
291 292 1.133915 CAAACCCCGGCCTACATACAT 60.134 52.381 0.00 0.00 0.00 2.29
292 293 0.763035 AACCCCGGCCTACATACATC 59.237 55.000 0.00 0.00 0.00 3.06
293 294 1.125711 ACCCCGGCCTACATACATCC 61.126 60.000 0.00 0.00 0.00 3.51
294 295 1.125093 CCCCGGCCTACATACATCCA 61.125 60.000 0.00 0.00 0.00 3.41
295 296 0.984230 CCCGGCCTACATACATCCAT 59.016 55.000 0.00 0.00 0.00 3.41
339 340 7.976175 TGTAAATCATCAGCAAGTAGACTACTG 59.024 37.037 15.88 10.87 39.39 2.74
341 342 5.568685 TCATCAGCAAGTAGACTACTGAC 57.431 43.478 15.88 10.82 40.10 3.51
342 343 4.095036 TCATCAGCAAGTAGACTACTGACG 59.905 45.833 15.88 8.86 40.10 4.35
359 360 9.050601 ACTACTGACGTAACATAGATAACTACC 57.949 37.037 0.00 0.00 0.00 3.18
363 364 7.700505 TGACGTAACATAGATAACTACCACAG 58.299 38.462 0.00 0.00 0.00 3.66
367 368 9.395707 CGTAACATAGATAACTACCACAGAATC 57.604 37.037 0.00 0.00 0.00 2.52
413 422 7.285401 ACACTAAGTTGATTTCTTCCACAACAT 59.715 33.333 0.00 0.00 43.06 2.71
422 434 7.449395 TGATTTCTTCCACAACATCTTCAAGAT 59.551 33.333 0.00 0.00 34.74 2.40
437 449 5.560966 TTCAAGATGGAAGAATAAACGGC 57.439 39.130 0.00 0.00 0.00 5.68
438 450 4.584874 TCAAGATGGAAGAATAAACGGCA 58.415 39.130 0.00 0.00 0.00 5.69
439 451 5.192927 TCAAGATGGAAGAATAAACGGCAT 58.807 37.500 0.00 0.00 0.00 4.40
440 452 5.296780 TCAAGATGGAAGAATAAACGGCATC 59.703 40.000 0.00 0.00 0.00 3.91
441 453 4.137543 AGATGGAAGAATAAACGGCATCC 58.862 43.478 0.00 0.00 0.00 3.51
488 500 1.423584 AAAAAGGGCCAAGACAAGGG 58.576 50.000 6.18 0.00 0.00 3.95
507 523 3.842436 AGGGTTTTCATCCTAGTTACCGT 59.158 43.478 0.00 0.00 0.00 4.83
513 529 1.120530 ATCCTAGTTACCGTGGCCAG 58.879 55.000 5.11 0.00 0.00 4.85
515 531 0.611714 CCTAGTTACCGTGGCCAGTT 59.388 55.000 5.11 0.00 0.00 3.16
517 533 2.234414 CCTAGTTACCGTGGCCAGTTAA 59.766 50.000 5.11 0.31 0.00 2.01
525 541 1.839424 GTGGCCAGTTAATGAAGGCT 58.161 50.000 5.11 0.00 46.23 4.58
539 555 1.681793 GAAGGCTAGCACATCGGTAGA 59.318 52.381 18.24 0.00 46.72 2.59
547 563 3.027412 AGCACATCGGTAGAGAGACAAT 58.973 45.455 0.00 0.00 0.00 2.71
553 569 5.186021 ACATCGGTAGAGAGACAATGTCTTT 59.814 40.000 17.79 12.03 43.53 2.52
560 576 7.332182 GGTAGAGAGACAATGTCTTTAACAAGG 59.668 40.741 17.79 0.00 43.53 3.61
561 577 5.703130 AGAGAGACAATGTCTTTAACAAGGC 59.297 40.000 17.79 1.20 43.53 4.35
587 603 4.996434 AAGTTCGCCGCTGCTGCT 62.996 61.111 14.02 0.00 36.97 4.24
603 619 2.715046 CTGCTCAGCCTAACCAATCAA 58.285 47.619 0.00 0.00 0.00 2.57
604 620 3.285484 CTGCTCAGCCTAACCAATCAAT 58.715 45.455 0.00 0.00 0.00 2.57
605 621 3.698040 CTGCTCAGCCTAACCAATCAATT 59.302 43.478 0.00 0.00 0.00 2.32
641 657 3.392616 AGTCTTCACCTTGGACATGAAGT 59.607 43.478 0.00 0.00 46.20 3.01
673 713 6.568869 TGGATTGGCCATAAAACTAATTTCG 58.431 36.000 6.09 0.00 43.33 3.46
697 745 7.651304 TCGCAACACAAACATTTATTTGATTCT 59.349 29.630 5.30 0.00 41.28 2.40
709 757 1.511850 TTGATTCTCTGTGTGCCGTG 58.488 50.000 0.00 0.00 0.00 4.94
720 779 3.934962 TGCCGTGCACAGGTAGCA 61.935 61.111 18.64 13.79 40.19 3.49
724 783 1.695893 CCGTGCACAGGTAGCAATCG 61.696 60.000 18.64 0.00 44.64 3.34
727 786 2.798145 CGTGCACAGGTAGCAATCGATA 60.798 50.000 18.64 0.00 44.64 2.92
728 787 2.540101 GTGCACAGGTAGCAATCGATAC 59.460 50.000 13.17 0.00 44.64 2.24
729 788 2.167487 TGCACAGGTAGCAATCGATACA 59.833 45.455 0.00 0.00 39.39 2.29
731 790 3.001330 GCACAGGTAGCAATCGATACAAC 59.999 47.826 0.00 0.00 35.65 3.32
732 791 3.242944 CACAGGTAGCAATCGATACAACG 59.757 47.826 0.00 0.00 35.65 4.10
733 792 2.218759 CAGGTAGCAATCGATACAACGC 59.781 50.000 0.00 0.00 35.65 4.84
736 795 1.720805 AGCAATCGATACAACGCACA 58.279 45.000 0.00 0.00 0.00 4.57
737 796 2.073056 AGCAATCGATACAACGCACAA 58.927 42.857 0.00 0.00 0.00 3.33
738 797 2.482336 AGCAATCGATACAACGCACAAA 59.518 40.909 0.00 0.00 0.00 2.83
739 798 2.840176 GCAATCGATACAACGCACAAAG 59.160 45.455 0.00 0.00 0.00 2.77
740 799 3.666902 GCAATCGATACAACGCACAAAGT 60.667 43.478 0.00 0.00 0.00 2.66
741 800 4.434989 GCAATCGATACAACGCACAAAGTA 60.435 41.667 0.00 0.00 0.00 2.24
742 801 5.613812 CAATCGATACAACGCACAAAGTAA 58.386 37.500 0.00 0.00 0.00 2.24
743 802 5.849357 ATCGATACAACGCACAAAGTAAA 57.151 34.783 0.00 0.00 0.00 2.01
750 809 9.171701 GATACAACGCACAAAGTAAATACAAAA 57.828 29.630 0.00 0.00 0.00 2.44
799 879 2.951229 ACAAAAACGGAGGGATCACT 57.049 45.000 0.00 0.00 0.00 3.41
824 904 6.540205 ACGAAACTCACCGATAATTTAAAGC 58.460 36.000 0.00 0.00 0.00 3.51
895 986 6.098982 CACTAGTTTATTCCCATCTCTGACCT 59.901 42.308 0.00 0.00 0.00 3.85
965 1065 1.087501 GTTCGGCTCACCATTTCTCC 58.912 55.000 0.00 0.00 34.57 3.71
994 1100 3.261951 CCTAACCACGGCGATGCG 61.262 66.667 16.62 5.29 0.00 4.73
1059 1172 4.035208 AGGACTAAATTAAATCCGCTTGCG 59.965 41.667 8.14 8.14 36.28 4.85
1074 1188 2.611518 CTTGCGAAGACAACCTAGGAG 58.388 52.381 17.98 10.18 0.00 3.69
1076 1190 2.244695 TGCGAAGACAACCTAGGAGAA 58.755 47.619 17.98 0.00 0.00 2.87
1080 1194 3.510360 CGAAGACAACCTAGGAGAAAGGA 59.490 47.826 17.98 0.00 37.57 3.36
1081 1195 4.618693 CGAAGACAACCTAGGAGAAAGGAC 60.619 50.000 17.98 0.00 37.57 3.85
1083 1197 3.579151 AGACAACCTAGGAGAAAGGACAC 59.421 47.826 17.98 0.00 37.57 3.67
1084 1198 3.314693 ACAACCTAGGAGAAAGGACACA 58.685 45.455 17.98 0.00 37.57 3.72
1086 1200 4.165372 ACAACCTAGGAGAAAGGACACAAA 59.835 41.667 17.98 0.00 37.57 2.83
1184 1314 4.383861 CAGCCGCTGAGCCTGTCA 62.384 66.667 15.74 0.00 32.44 3.58
1372 1571 3.227276 CGGAGCTAGGGACGGCAT 61.227 66.667 0.00 0.00 34.83 4.40
1373 1572 2.797278 CGGAGCTAGGGACGGCATT 61.797 63.158 0.00 0.00 34.83 3.56
1508 1737 0.617935 GCAGCTTCTTCTTCTCCCCT 59.382 55.000 0.00 0.00 0.00 4.79
1514 1743 3.445987 CTTCTTCTTCTCCCCTACCACT 58.554 50.000 0.00 0.00 0.00 4.00
1538 1767 1.000827 CAGGCGATACGAGAGCTCATT 60.001 52.381 17.77 1.44 0.00 2.57
1574 8685 0.951558 GCTTTGTTCGAGGCTTGGAA 59.048 50.000 0.97 0.00 0.00 3.53
1599 8710 5.203370 CAGCTTGTGAATATTGAAGATCGC 58.797 41.667 0.00 0.00 0.00 4.58
1604 8719 2.367241 TGAATATTGAAGATCGCCCGGA 59.633 45.455 0.73 0.00 0.00 5.14
1662 8787 5.171337 GCACTGTAATTGTCTTGTTTGTTCG 59.829 40.000 0.00 0.00 0.00 3.95
1669 8794 2.356382 TGTCTTGTTTGTTCGGCGATTT 59.644 40.909 11.76 0.00 0.00 2.17
1713 8841 8.952278 TCGCCACTGTACATTTCTTATTAATTT 58.048 29.630 0.00 0.00 0.00 1.82
1739 8867 3.810386 TGATTACAGTTTAGCGCACACAA 59.190 39.130 11.47 0.00 0.00 3.33
1756 8884 6.165577 GCACACAAATGGATAAGTTGGATTT 58.834 36.000 0.00 0.00 0.00 2.17
1844 9176 5.897518 CGAGTACTCGTAATTTTCTCTCTCG 59.102 44.000 32.24 6.01 46.99 4.04
2008 10116 4.035017 CACCAAGTGCTTGTAAACTTTCG 58.965 43.478 10.56 0.00 38.85 3.46
2081 10189 4.675976 TTTTGTCGAAAGAGACCACCTA 57.324 40.909 0.00 0.00 43.49 3.08
2111 10219 3.806949 ATTGCCAGAAAAGACCACCTA 57.193 42.857 0.00 0.00 0.00 3.08
2114 10222 5.450818 TTGCCAGAAAAGACCACCTATAT 57.549 39.130 0.00 0.00 0.00 0.86
2140 10248 3.975479 TTTGACAAAAAGGACCCCCTA 57.025 42.857 0.00 0.00 43.48 3.53
2142 10250 2.424793 TGACAAAAAGGACCCCCTAGT 58.575 47.619 0.00 0.00 43.48 2.57
2256 10364 2.286772 GGCAAAACGTGTTACCAGACTG 60.287 50.000 2.57 0.00 0.00 3.51
2259 10367 3.530265 AAACGTGTTACCAGACTGTGA 57.470 42.857 0.93 0.00 0.00 3.58
2318 10427 4.021925 GCCACAAGAGGAGGCGGT 62.022 66.667 0.00 0.00 38.86 5.68
2362 10471 2.811317 CGACAGGCCTCGCAGTTC 60.811 66.667 0.00 0.00 0.00 3.01
2363 10472 2.343758 GACAGGCCTCGCAGTTCA 59.656 61.111 0.00 0.00 0.00 3.18
2374 10483 2.350895 CAGTTCACGGGGCCATCA 59.649 61.111 4.39 0.00 0.00 3.07
2397 10506 4.865761 GTCACGCCGCCATCGCTA 62.866 66.667 0.00 0.00 0.00 4.26
2523 10632 1.887242 GGACGTTGTGTGCTGCTGA 60.887 57.895 0.00 0.00 35.76 4.26
2543 10652 2.756321 TTTTGCCCGGGAATCGCTCA 62.756 55.000 29.31 7.84 37.59 4.26
2546 10655 2.505982 CCCGGGAATCGCTCATGT 59.494 61.111 18.48 0.00 37.59 3.21
2572 10681 2.974692 TTCTGCCCGCCTGCTTTTGA 62.975 55.000 0.00 0.00 0.00 2.69
2582 10691 3.132925 GCCTGCTTTTGATTCTTTTGCA 58.867 40.909 0.00 0.00 0.00 4.08
2698 10807 4.994220 TTGTCTGTTCGCGCTTATTTTA 57.006 36.364 5.56 0.00 0.00 1.52
2712 10821 5.984926 CGCTTATTTTATGGCCATCATTTGT 59.015 36.000 24.80 7.48 37.30 2.83
2798 10907 1.334059 CCACTGCGCAAAGTGTGTAAG 60.334 52.381 23.30 8.33 45.08 2.34
2800 10909 2.224079 CACTGCGCAAAGTGTGTAAGAT 59.776 45.455 18.75 0.00 42.21 2.40
2802 10911 4.093408 CACTGCGCAAAGTGTGTAAGATAT 59.907 41.667 18.75 0.00 42.21 1.63
2860 11973 2.164624 CCGTCAATATTTTCCCGCCAAA 59.835 45.455 0.00 0.00 0.00 3.28
2862 11975 4.041723 CGTCAATATTTTCCCGCCAAATC 58.958 43.478 0.00 0.00 0.00 2.17
2878 11991 4.038402 GCCAAATCTTTCCCTCCATATGTG 59.962 45.833 1.24 0.00 0.00 3.21
2879 11992 5.203528 CCAAATCTTTCCCTCCATATGTGT 58.796 41.667 1.24 0.00 0.00 3.72
2880 11993 5.658190 CCAAATCTTTCCCTCCATATGTGTT 59.342 40.000 1.24 0.00 0.00 3.32
2881 11994 6.406177 CCAAATCTTTCCCTCCATATGTGTTG 60.406 42.308 1.24 0.00 0.00 3.33
2882 11995 4.235079 TCTTTCCCTCCATATGTGTTGG 57.765 45.455 1.24 0.00 35.45 3.77
2883 11996 3.849574 TCTTTCCCTCCATATGTGTTGGA 59.150 43.478 1.24 0.00 40.96 3.53
2884 11997 4.290985 TCTTTCCCTCCATATGTGTTGGAA 59.709 41.667 1.24 5.69 42.56 3.53
2885 11998 4.666412 TTCCCTCCATATGTGTTGGAAA 57.334 40.909 1.24 0.00 42.56 3.13
2886 11999 4.879295 TCCCTCCATATGTGTTGGAAAT 57.121 40.909 1.24 0.00 42.56 2.17
2887 12000 5.985175 TCCCTCCATATGTGTTGGAAATA 57.015 39.130 1.24 0.00 42.56 1.40
2888 12001 6.529084 TCCCTCCATATGTGTTGGAAATAT 57.471 37.500 1.24 0.00 42.56 1.28
2889 12002 6.306199 TCCCTCCATATGTGTTGGAAATATG 58.694 40.000 1.24 0.00 42.56 1.78
2890 12003 5.047802 CCCTCCATATGTGTTGGAAATATGC 60.048 44.000 1.24 0.00 42.56 3.14
2891 12004 5.047802 CCTCCATATGTGTTGGAAATATGCC 60.048 44.000 1.24 0.00 42.56 4.40
2892 12005 4.832266 TCCATATGTGTTGGAAATATGCCC 59.168 41.667 1.24 0.00 40.29 5.36
2893 12006 4.834496 CCATATGTGTTGGAAATATGCCCT 59.166 41.667 1.24 0.00 36.26 5.19
2894 12007 6.009589 CCATATGTGTTGGAAATATGCCCTA 58.990 40.000 1.24 0.00 36.26 3.53
2895 12008 6.151648 CCATATGTGTTGGAAATATGCCCTAG 59.848 42.308 1.24 0.00 36.26 3.02
2896 12009 4.853468 TGTGTTGGAAATATGCCCTAGA 57.147 40.909 0.00 0.00 0.00 2.43
2897 12010 4.780815 TGTGTTGGAAATATGCCCTAGAG 58.219 43.478 0.00 0.00 0.00 2.43
2898 12011 4.137543 GTGTTGGAAATATGCCCTAGAGG 58.862 47.826 0.00 0.00 39.47 3.69
2912 12025 3.954258 CCCTAGAGGCAACAATAAAAGGG 59.046 47.826 0.00 0.00 41.41 3.95
2913 12026 4.569865 CCCTAGAGGCAACAATAAAAGGGT 60.570 45.833 0.00 0.00 41.41 4.34
2914 12027 5.016831 CCTAGAGGCAACAATAAAAGGGTT 58.983 41.667 0.00 0.00 41.41 4.11
2915 12028 6.184789 CCTAGAGGCAACAATAAAAGGGTTA 58.815 40.000 0.00 0.00 41.41 2.85
2916 12029 6.833933 CCTAGAGGCAACAATAAAAGGGTTAT 59.166 38.462 0.00 0.00 41.41 1.89
2917 12030 7.342026 CCTAGAGGCAACAATAAAAGGGTTATT 59.658 37.037 0.00 0.00 41.41 1.40
2918 12031 9.403583 CTAGAGGCAACAATAAAAGGGTTATTA 57.596 33.333 0.00 0.00 41.41 0.98
2919 12032 8.838649 AGAGGCAACAATAAAAGGGTTATTAT 57.161 30.769 0.00 0.00 41.41 1.28
2920 12033 9.267071 AGAGGCAACAATAAAAGGGTTATTATT 57.733 29.630 0.00 0.00 41.41 1.40
2975 12088 7.658179 ATTCATGCTATAACTGTATTGTCCG 57.342 36.000 0.00 0.00 0.00 4.79
2976 12089 5.538118 TCATGCTATAACTGTATTGTCCGG 58.462 41.667 0.00 0.00 0.00 5.14
2977 12090 5.303333 TCATGCTATAACTGTATTGTCCGGA 59.697 40.000 0.00 0.00 0.00 5.14
2978 12091 5.601583 TGCTATAACTGTATTGTCCGGAA 57.398 39.130 5.23 0.00 0.00 4.30
2979 12092 5.979993 TGCTATAACTGTATTGTCCGGAAA 58.020 37.500 5.23 0.00 0.00 3.13
2980 12093 6.588204 TGCTATAACTGTATTGTCCGGAAAT 58.412 36.000 5.23 11.20 0.00 2.17
2981 12094 6.704493 TGCTATAACTGTATTGTCCGGAAATC 59.296 38.462 5.23 0.00 0.00 2.17
2982 12095 6.128902 GCTATAACTGTATTGTCCGGAAATCG 60.129 42.308 5.23 4.18 38.88 3.34
2983 12096 3.604875 ACTGTATTGTCCGGAAATCGT 57.395 42.857 5.23 4.74 37.11 3.73
2984 12097 4.724074 ACTGTATTGTCCGGAAATCGTA 57.276 40.909 5.23 0.00 37.11 3.43
2985 12098 5.075858 ACTGTATTGTCCGGAAATCGTAA 57.924 39.130 5.23 0.00 37.11 3.18
2986 12099 5.667466 ACTGTATTGTCCGGAAATCGTAAT 58.333 37.500 5.23 3.28 37.11 1.89
2987 12100 6.808829 ACTGTATTGTCCGGAAATCGTAATA 58.191 36.000 5.23 2.30 37.11 0.98
2988 12101 6.698766 ACTGTATTGTCCGGAAATCGTAATAC 59.301 38.462 5.23 14.10 37.96 1.89
2989 12102 6.571605 TGTATTGTCCGGAAATCGTAATACA 58.428 36.000 5.23 16.25 40.93 2.29
2990 12103 5.978934 ATTGTCCGGAAATCGTAATACAC 57.021 39.130 5.23 0.00 37.11 2.90
3006 12119 7.979037 CGTAATACACGTGTGAATACATAGAC 58.021 38.462 30.83 14.41 45.82 2.59
3007 12120 7.112565 CGTAATACACGTGTGAATACATAGACC 59.887 40.741 30.83 6.57 45.82 3.85
3008 12121 4.794278 ACACGTGTGAATACATAGACCA 57.206 40.909 22.71 0.00 39.39 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 9.891828 GATCAAACAGTACACAAATTATTCACA 57.108 29.630 0.00 0.00 0.00 3.58
15 16 9.959721 AGGTAGATCAAACAGTACACAAATTAT 57.040 29.630 0.00 0.00 0.00 1.28
16 17 9.214957 CAGGTAGATCAAACAGTACACAAATTA 57.785 33.333 0.00 0.00 0.00 1.40
17 18 7.719633 ACAGGTAGATCAAACAGTACACAAATT 59.280 33.333 0.00 0.00 0.00 1.82
18 19 7.224297 ACAGGTAGATCAAACAGTACACAAAT 58.776 34.615 0.00 0.00 0.00 2.32
19 20 6.588204 ACAGGTAGATCAAACAGTACACAAA 58.412 36.000 0.00 0.00 0.00 2.83
20 21 6.169557 ACAGGTAGATCAAACAGTACACAA 57.830 37.500 0.00 0.00 0.00 3.33
21 22 5.801531 ACAGGTAGATCAAACAGTACACA 57.198 39.130 0.00 0.00 0.00 3.72
22 23 5.408604 CCAACAGGTAGATCAAACAGTACAC 59.591 44.000 0.00 0.00 0.00 2.90
23 24 5.512404 CCCAACAGGTAGATCAAACAGTACA 60.512 44.000 0.00 0.00 0.00 2.90
24 25 4.935808 CCCAACAGGTAGATCAAACAGTAC 59.064 45.833 0.00 0.00 0.00 2.73
25 26 5.160607 CCCAACAGGTAGATCAAACAGTA 57.839 43.478 0.00 0.00 0.00 2.74
26 27 4.021102 CCCAACAGGTAGATCAAACAGT 57.979 45.455 0.00 0.00 0.00 3.55
68 69 2.723746 CGTACCCATACCCGACGG 59.276 66.667 6.99 6.99 0.00 4.79
69 70 2.723746 CCGTACCCATACCCGACG 59.276 66.667 0.00 0.00 0.00 5.12
70 71 0.467290 TACCCGTACCCATACCCGAC 60.467 60.000 0.00 0.00 0.00 4.79
71 72 0.260230 TTACCCGTACCCATACCCGA 59.740 55.000 0.00 0.00 0.00 5.14
72 73 1.069049 CTTTACCCGTACCCATACCCG 59.931 57.143 0.00 0.00 0.00 5.28
73 74 2.118679 ACTTTACCCGTACCCATACCC 58.881 52.381 0.00 0.00 0.00 3.69
74 75 4.588528 TGATACTTTACCCGTACCCATACC 59.411 45.833 0.00 0.00 0.00 2.73
75 76 5.789643 TGATACTTTACCCGTACCCATAC 57.210 43.478 0.00 0.00 0.00 2.39
76 77 6.437162 GGTATGATACTTTACCCGTACCCATA 59.563 42.308 2.24 0.00 35.94 2.74
77 78 5.246883 GGTATGATACTTTACCCGTACCCAT 59.753 44.000 2.24 0.00 35.94 4.00
78 79 4.588528 GGTATGATACTTTACCCGTACCCA 59.411 45.833 2.24 0.00 35.94 4.51
79 80 4.588528 TGGTATGATACTTTACCCGTACCC 59.411 45.833 2.24 0.00 39.32 3.69
80 81 5.789643 TGGTATGATACTTTACCCGTACC 57.210 43.478 2.24 0.00 40.07 3.34
81 82 5.687285 CGTTGGTATGATACTTTACCCGTAC 59.313 44.000 2.24 0.00 37.63 3.67
82 83 5.221224 CCGTTGGTATGATACTTTACCCGTA 60.221 44.000 2.24 0.00 37.63 4.02
83 84 4.441913 CCGTTGGTATGATACTTTACCCGT 60.442 45.833 2.24 0.00 37.63 5.28
84 85 4.053295 CCGTTGGTATGATACTTTACCCG 58.947 47.826 2.24 0.00 37.63 5.28
85 86 4.141642 ACCCGTTGGTATGATACTTTACCC 60.142 45.833 2.24 0.00 45.45 3.69
86 87 5.027293 ACCCGTTGGTATGATACTTTACC 57.973 43.478 2.24 0.00 45.45 2.85
100 101 1.766496 ACCCATACTCATACCCGTTGG 59.234 52.381 0.00 0.00 37.80 3.77
101 102 3.893200 TCTACCCATACTCATACCCGTTG 59.107 47.826 0.00 0.00 0.00 4.10
102 103 4.188937 TCTACCCATACTCATACCCGTT 57.811 45.455 0.00 0.00 0.00 4.44
103 104 3.889859 TCTACCCATACTCATACCCGT 57.110 47.619 0.00 0.00 0.00 5.28
104 105 5.740290 AATTCTACCCATACTCATACCCG 57.260 43.478 0.00 0.00 0.00 5.28
105 106 7.287810 ACAAAATTCTACCCATACTCATACCC 58.712 38.462 0.00 0.00 0.00 3.69
106 107 9.269453 GTACAAAATTCTACCCATACTCATACC 57.731 37.037 0.00 0.00 0.00 2.73
107 108 9.269453 GGTACAAAATTCTACCCATACTCATAC 57.731 37.037 0.00 0.00 0.00 2.39
118 119 7.608761 TGTAGTCAATGGGTACAAAATTCTACC 59.391 37.037 0.00 0.00 32.87 3.18
119 120 8.448615 GTGTAGTCAATGGGTACAAAATTCTAC 58.551 37.037 0.00 0.00 0.00 2.59
120 121 7.332430 CGTGTAGTCAATGGGTACAAAATTCTA 59.668 37.037 0.00 0.00 0.00 2.10
121 122 6.148811 CGTGTAGTCAATGGGTACAAAATTCT 59.851 38.462 0.00 0.00 0.00 2.40
122 123 6.311723 CGTGTAGTCAATGGGTACAAAATTC 58.688 40.000 0.00 0.00 0.00 2.17
123 124 5.182380 CCGTGTAGTCAATGGGTACAAAATT 59.818 40.000 0.00 0.00 0.00 1.82
124 125 4.698304 CCGTGTAGTCAATGGGTACAAAAT 59.302 41.667 0.00 0.00 0.00 1.82
125 126 4.066490 CCGTGTAGTCAATGGGTACAAAA 58.934 43.478 0.00 0.00 0.00 2.44
126 127 3.557475 CCCGTGTAGTCAATGGGTACAAA 60.557 47.826 0.00 0.00 37.00 2.83
127 128 2.027929 CCCGTGTAGTCAATGGGTACAA 60.028 50.000 0.00 0.00 37.00 2.41
128 129 1.551430 CCCGTGTAGTCAATGGGTACA 59.449 52.381 0.00 0.00 37.00 2.90
129 130 1.551883 ACCCGTGTAGTCAATGGGTAC 59.448 52.381 4.50 0.00 46.34 3.34
130 131 1.941377 ACCCGTGTAGTCAATGGGTA 58.059 50.000 4.50 0.00 46.34 3.69
131 132 2.768046 ACCCGTGTAGTCAATGGGT 58.232 52.632 0.30 0.30 44.66 4.51
132 133 2.484770 CCATACCCGTGTAGTCAATGGG 60.485 54.545 0.00 0.00 43.24 4.00
133 134 2.484770 CCCATACCCGTGTAGTCAATGG 60.485 54.545 0.00 0.00 0.00 3.16
134 135 2.169769 ACCCATACCCGTGTAGTCAATG 59.830 50.000 0.00 0.00 0.00 2.82
135 136 2.474112 ACCCATACCCGTGTAGTCAAT 58.526 47.619 0.00 0.00 0.00 2.57
136 137 1.941377 ACCCATACCCGTGTAGTCAA 58.059 50.000 0.00 0.00 0.00 3.18
137 138 2.824689 TACCCATACCCGTGTAGTCA 57.175 50.000 0.00 0.00 0.00 3.41
138 139 2.298163 CCATACCCATACCCGTGTAGTC 59.702 54.545 0.00 0.00 0.00 2.59
139 140 2.322658 CCATACCCATACCCGTGTAGT 58.677 52.381 0.00 0.00 0.00 2.73
140 141 2.322658 ACCATACCCATACCCGTGTAG 58.677 52.381 0.00 0.00 0.00 2.74
141 142 2.475339 ACCATACCCATACCCGTGTA 57.525 50.000 0.00 0.00 0.00 2.90
142 143 2.475339 TACCATACCCATACCCGTGT 57.525 50.000 0.00 0.00 0.00 4.49
143 144 3.670625 CAATACCATACCCATACCCGTG 58.329 50.000 0.00 0.00 0.00 4.94
144 145 2.039348 GCAATACCATACCCATACCCGT 59.961 50.000 0.00 0.00 0.00 5.28
145 146 2.304761 AGCAATACCATACCCATACCCG 59.695 50.000 0.00 0.00 0.00 5.28
146 147 3.587506 AGAGCAATACCATACCCATACCC 59.412 47.826 0.00 0.00 0.00 3.69
147 148 4.910458 AGAGCAATACCATACCCATACC 57.090 45.455 0.00 0.00 0.00 2.73
148 149 6.583562 GGATAGAGCAATACCATACCCATAC 58.416 44.000 0.00 0.00 0.00 2.39
149 150 5.362717 CGGATAGAGCAATACCATACCCATA 59.637 44.000 0.00 0.00 0.00 2.74
150 151 4.162320 CGGATAGAGCAATACCATACCCAT 59.838 45.833 0.00 0.00 0.00 4.00
151 152 3.513912 CGGATAGAGCAATACCATACCCA 59.486 47.826 0.00 0.00 0.00 4.51
152 153 3.679083 GCGGATAGAGCAATACCATACCC 60.679 52.174 0.00 0.00 34.19 3.69
153 154 3.522553 GCGGATAGAGCAATACCATACC 58.477 50.000 0.00 0.00 34.19 2.73
154 155 3.522553 GGCGGATAGAGCAATACCATAC 58.477 50.000 0.00 0.00 36.08 2.39
155 156 2.500098 GGGCGGATAGAGCAATACCATA 59.500 50.000 0.00 0.00 36.08 2.74
156 157 1.279271 GGGCGGATAGAGCAATACCAT 59.721 52.381 0.00 0.00 36.08 3.55
157 158 0.685097 GGGCGGATAGAGCAATACCA 59.315 55.000 0.00 0.00 36.08 3.25
158 159 0.036294 GGGGCGGATAGAGCAATACC 60.036 60.000 0.00 0.00 36.08 2.73
159 160 0.685097 TGGGGCGGATAGAGCAATAC 59.315 55.000 0.00 0.00 36.08 1.89
160 161 1.656587 ATGGGGCGGATAGAGCAATA 58.343 50.000 0.00 0.00 36.08 1.90
161 162 1.279271 GTATGGGGCGGATAGAGCAAT 59.721 52.381 0.00 0.00 36.08 3.56
162 163 0.685097 GTATGGGGCGGATAGAGCAA 59.315 55.000 0.00 0.00 36.08 3.91
163 164 1.192146 GGTATGGGGCGGATAGAGCA 61.192 60.000 0.00 0.00 36.08 4.26
164 165 1.597461 GGTATGGGGCGGATAGAGC 59.403 63.158 0.00 0.00 0.00 4.09
165 166 0.252284 AGGGTATGGGGCGGATAGAG 60.252 60.000 0.00 0.00 0.00 2.43
166 167 1.086565 TAGGGTATGGGGCGGATAGA 58.913 55.000 0.00 0.00 0.00 1.98
167 168 2.040178 GATAGGGTATGGGGCGGATAG 58.960 57.143 0.00 0.00 0.00 2.08
168 169 1.343681 GGATAGGGTATGGGGCGGATA 60.344 57.143 0.00 0.00 0.00 2.59
169 170 0.620700 GGATAGGGTATGGGGCGGAT 60.621 60.000 0.00 0.00 0.00 4.18
170 171 1.229400 GGATAGGGTATGGGGCGGA 60.229 63.158 0.00 0.00 0.00 5.54
171 172 0.914417 ATGGATAGGGTATGGGGCGG 60.914 60.000 0.00 0.00 0.00 6.13
172 173 0.991920 AATGGATAGGGTATGGGGCG 59.008 55.000 0.00 0.00 0.00 6.13
173 174 1.616994 GCAATGGATAGGGTATGGGGC 60.617 57.143 0.00 0.00 0.00 5.80
174 175 1.005924 GGCAATGGATAGGGTATGGGG 59.994 57.143 0.00 0.00 0.00 4.96
175 176 1.710244 TGGCAATGGATAGGGTATGGG 59.290 52.381 0.00 0.00 0.00 4.00
176 177 3.624777 GATGGCAATGGATAGGGTATGG 58.375 50.000 0.00 0.00 0.00 2.74
177 178 3.267812 AGGATGGCAATGGATAGGGTATG 59.732 47.826 0.00 0.00 0.00 2.39
178 179 3.545779 AGGATGGCAATGGATAGGGTAT 58.454 45.455 0.00 0.00 0.00 2.73
179 180 3.004126 AGGATGGCAATGGATAGGGTA 57.996 47.619 0.00 0.00 0.00 3.69
180 181 1.838611 AGGATGGCAATGGATAGGGT 58.161 50.000 0.00 0.00 0.00 4.34
181 182 2.986534 AAGGATGGCAATGGATAGGG 57.013 50.000 0.00 0.00 0.00 3.53
182 183 5.447778 AGATAAGGATGGCAATGGATAGG 57.552 43.478 0.00 0.00 0.00 2.57
183 184 7.429374 TCTAGATAAGGATGGCAATGGATAG 57.571 40.000 0.00 0.00 0.00 2.08
184 185 7.813087 TTCTAGATAAGGATGGCAATGGATA 57.187 36.000 0.00 0.00 0.00 2.59
185 186 6.708885 TTCTAGATAAGGATGGCAATGGAT 57.291 37.500 0.00 0.00 0.00 3.41
186 187 6.119240 CTTCTAGATAAGGATGGCAATGGA 57.881 41.667 0.00 0.00 0.00 3.41
196 197 8.662255 TTTGTTTACAACCCTTCTAGATAAGGA 58.338 33.333 11.49 0.00 44.94 3.36
197 198 8.727910 GTTTGTTTACAACCCTTCTAGATAAGG 58.272 37.037 3.73 3.73 44.87 2.69
198 199 9.503399 AGTTTGTTTACAACCCTTCTAGATAAG 57.497 33.333 0.00 0.00 35.28 1.73
199 200 9.856162 AAGTTTGTTTACAACCCTTCTAGATAA 57.144 29.630 0.00 0.00 35.28 1.75
200 201 9.498176 GAAGTTTGTTTACAACCCTTCTAGATA 57.502 33.333 18.10 0.00 39.05 1.98
201 202 8.218488 AGAAGTTTGTTTACAACCCTTCTAGAT 58.782 33.333 22.56 9.43 44.24 1.98
202 203 7.571025 AGAAGTTTGTTTACAACCCTTCTAGA 58.429 34.615 22.56 0.00 44.24 2.43
203 204 7.715686 AGAGAAGTTTGTTTACAACCCTTCTAG 59.284 37.037 23.24 0.00 45.05 2.43
204 205 7.497909 CAGAGAAGTTTGTTTACAACCCTTCTA 59.502 37.037 23.24 0.00 45.05 2.10
205 206 6.318900 CAGAGAAGTTTGTTTACAACCCTTCT 59.681 38.462 23.33 23.33 46.24 2.85
206 207 6.495706 CAGAGAAGTTTGTTTACAACCCTTC 58.504 40.000 17.88 17.88 40.61 3.46
207 208 5.163550 GCAGAGAAGTTTGTTTACAACCCTT 60.164 40.000 0.00 1.29 35.28 3.95
208 209 4.338400 GCAGAGAAGTTTGTTTACAACCCT 59.662 41.667 0.00 0.00 35.28 4.34
209 210 4.097286 TGCAGAGAAGTTTGTTTACAACCC 59.903 41.667 0.00 0.00 35.28 4.11
210 211 5.163652 ACTGCAGAGAAGTTTGTTTACAACC 60.164 40.000 23.35 0.00 35.28 3.77
211 212 5.880341 ACTGCAGAGAAGTTTGTTTACAAC 58.120 37.500 23.35 0.00 35.28 3.32
212 213 6.509418 AACTGCAGAGAAGTTTGTTTACAA 57.491 33.333 23.35 0.00 34.16 2.41
213 214 7.618502 TTAACTGCAGAGAAGTTTGTTTACA 57.381 32.000 23.35 0.00 38.73 2.41
214 215 7.165977 GCTTTAACTGCAGAGAAGTTTGTTTAC 59.834 37.037 23.35 2.52 38.73 2.01
215 216 7.067008 AGCTTTAACTGCAGAGAAGTTTGTTTA 59.933 33.333 23.35 1.06 38.73 2.01
216 217 6.036470 GCTTTAACTGCAGAGAAGTTTGTTT 58.964 36.000 23.35 2.14 38.73 2.83
217 218 5.358160 AGCTTTAACTGCAGAGAAGTTTGTT 59.642 36.000 23.35 3.91 38.73 2.83
218 219 4.884164 AGCTTTAACTGCAGAGAAGTTTGT 59.116 37.500 23.35 5.21 38.73 2.83
219 220 5.429957 AGCTTTAACTGCAGAGAAGTTTG 57.570 39.130 23.35 3.72 38.73 2.93
220 221 6.292150 ACTAGCTTTAACTGCAGAGAAGTTT 58.708 36.000 23.35 14.14 38.73 2.66
221 222 5.859495 ACTAGCTTTAACTGCAGAGAAGTT 58.141 37.500 23.35 18.86 40.82 2.66
222 223 5.476091 ACTAGCTTTAACTGCAGAGAAGT 57.524 39.130 23.35 11.08 0.00 3.01
223 224 8.485976 AATAACTAGCTTTAACTGCAGAGAAG 57.514 34.615 23.35 19.78 0.00 2.85
224 225 8.848474 AAATAACTAGCTTTAACTGCAGAGAA 57.152 30.769 23.35 10.89 0.00 2.87
225 226 8.848474 AAAATAACTAGCTTTAACTGCAGAGA 57.152 30.769 23.35 4.21 0.00 3.10
226 227 9.548208 GAAAAATAACTAGCTTTAACTGCAGAG 57.452 33.333 23.35 8.39 0.00 3.35
227 228 9.284968 AGAAAAATAACTAGCTTTAACTGCAGA 57.715 29.630 23.35 0.00 0.00 4.26
228 229 9.899226 AAGAAAAATAACTAGCTTTAACTGCAG 57.101 29.630 13.48 13.48 0.00 4.41
246 247 8.856103 TGAACCTCCTTTTCGAATAAGAAAAAT 58.144 29.630 16.62 5.27 45.78 1.82
247 248 8.228035 TGAACCTCCTTTTCGAATAAGAAAAA 57.772 30.769 16.62 0.19 45.78 1.94
248 249 7.811117 TGAACCTCCTTTTCGAATAAGAAAA 57.189 32.000 16.62 5.04 44.79 2.29
249 250 7.811117 TTGAACCTCCTTTTCGAATAAGAAA 57.189 32.000 16.62 1.42 38.23 2.52
250 251 7.255346 GGTTTGAACCTCCTTTTCGAATAAGAA 60.255 37.037 16.62 1.74 45.75 2.52
251 252 6.206048 GGTTTGAACCTCCTTTTCGAATAAGA 59.794 38.462 16.62 4.69 45.75 2.10
252 253 6.379386 GGTTTGAACCTCCTTTTCGAATAAG 58.621 40.000 0.00 5.94 45.75 1.73
253 254 6.321848 GGTTTGAACCTCCTTTTCGAATAA 57.678 37.500 0.00 0.00 45.75 1.40
254 255 5.952526 GGTTTGAACCTCCTTTTCGAATA 57.047 39.130 0.00 0.00 45.75 1.75
255 256 4.848562 GGTTTGAACCTCCTTTTCGAAT 57.151 40.909 0.00 0.00 45.75 3.34
268 269 0.323087 ATGTAGGCCGGGGTTTGAAC 60.323 55.000 2.18 0.00 0.00 3.18
269 270 1.065272 GTATGTAGGCCGGGGTTTGAA 60.065 52.381 2.18 0.00 0.00 2.69
270 271 0.542805 GTATGTAGGCCGGGGTTTGA 59.457 55.000 2.18 0.00 0.00 2.69
271 272 0.253610 TGTATGTAGGCCGGGGTTTG 59.746 55.000 2.18 0.00 0.00 2.93
272 273 1.142262 GATGTATGTAGGCCGGGGTTT 59.858 52.381 2.18 0.00 0.00 3.27
273 274 0.763035 GATGTATGTAGGCCGGGGTT 59.237 55.000 2.18 0.00 0.00 4.11
274 275 1.125711 GGATGTATGTAGGCCGGGGT 61.126 60.000 2.18 0.00 0.00 4.95
275 276 1.125093 TGGATGTATGTAGGCCGGGG 61.125 60.000 2.18 0.00 0.00 5.73
276 277 0.984230 ATGGATGTATGTAGGCCGGG 59.016 55.000 2.18 0.00 0.00 5.73
277 278 5.808366 ATATATGGATGTATGTAGGCCGG 57.192 43.478 0.00 0.00 0.00 6.13
278 279 9.778741 AATAAATATATGGATGTATGTAGGCCG 57.221 33.333 0.00 0.00 0.00 6.13
325 326 5.039480 TGTTACGTCAGTAGTCTACTTGC 57.961 43.478 9.95 5.34 36.76 4.01
334 335 9.049523 TGGTAGTTATCTATGTTACGTCAGTAG 57.950 37.037 0.00 0.00 33.87 2.57
339 340 7.923888 TCTGTGGTAGTTATCTATGTTACGTC 58.076 38.462 0.00 0.00 0.00 4.34
341 342 9.395707 GATTCTGTGGTAGTTATCTATGTTACG 57.604 37.037 0.00 0.00 0.00 3.18
386 388 7.122055 TGTTGTGGAAGAAATCAACTTAGTGTT 59.878 33.333 0.00 0.00 40.20 3.32
396 405 6.772233 TCTTGAAGATGTTGTGGAAGAAATCA 59.228 34.615 0.00 0.00 0.00 2.57
413 422 5.354234 GCCGTTTATTCTTCCATCTTGAAGA 59.646 40.000 0.00 0.00 46.77 2.87
422 434 2.285083 CGGATGCCGTTTATTCTTCCA 58.715 47.619 0.00 0.00 42.73 3.53
453 465 0.457851 TTTTTGGTTGGACGTGCAGG 59.542 50.000 10.41 4.53 0.00 4.85
473 485 0.264657 AAAACCCTTGTCTTGGCCCT 59.735 50.000 0.00 0.00 0.00 5.19
488 500 3.373130 GCCACGGTAACTAGGATGAAAAC 59.627 47.826 0.00 0.00 0.00 2.43
507 523 2.683742 GCTAGCCTTCATTAACTGGCCA 60.684 50.000 4.71 4.71 45.94 5.36
513 529 3.248602 CCGATGTGCTAGCCTTCATTAAC 59.751 47.826 13.29 1.10 0.00 2.01
515 531 2.434336 ACCGATGTGCTAGCCTTCATTA 59.566 45.455 13.29 0.00 0.00 1.90
517 533 0.833287 ACCGATGTGCTAGCCTTCAT 59.167 50.000 13.29 13.80 0.00 2.57
525 541 3.277142 TGTCTCTCTACCGATGTGCTA 57.723 47.619 0.00 0.00 0.00 3.49
539 555 5.376625 TGCCTTGTTAAAGACATTGTCTCT 58.623 37.500 19.23 8.84 42.59 3.10
547 563 2.869801 CGTCACTGCCTTGTTAAAGACA 59.130 45.455 0.00 0.00 35.19 3.41
553 569 1.225855 CTTGCGTCACTGCCTTGTTA 58.774 50.000 0.00 0.00 0.00 2.41
560 576 2.127609 GCGAACTTGCGTCACTGC 60.128 61.111 0.00 0.00 0.00 4.40
561 577 2.551270 GGCGAACTTGCGTCACTG 59.449 61.111 0.00 0.00 35.64 3.66
563 579 4.719616 GCGGCGAACTTGCGTCAC 62.720 66.667 12.98 0.00 35.20 3.67
593 609 8.160765 TCTTGTTCTGACCTAATTGATTGGTTA 58.839 33.333 0.00 0.00 33.74 2.85
603 619 6.459923 GTGAAGACTCTTGTTCTGACCTAAT 58.540 40.000 0.00 0.00 0.00 1.73
604 620 5.221461 GGTGAAGACTCTTGTTCTGACCTAA 60.221 44.000 0.00 0.00 0.00 2.69
605 621 4.281182 GGTGAAGACTCTTGTTCTGACCTA 59.719 45.833 0.00 0.00 0.00 3.08
641 657 2.480725 TGGCCAATCCACCTAACCA 58.519 52.632 0.61 0.00 40.72 3.67
668 708 8.136057 TCAAATAAATGTTTGTGTTGCGAAAT 57.864 26.923 3.13 0.00 39.50 2.17
671 711 7.651304 AGAATCAAATAAATGTTTGTGTTGCGA 59.349 29.630 3.13 0.00 39.50 5.10
673 713 8.981647 AGAGAATCAAATAAATGTTTGTGTTGC 58.018 29.630 3.13 0.00 39.50 4.17
709 757 2.821546 TGTATCGATTGCTACCTGTGC 58.178 47.619 1.71 0.00 0.00 4.57
712 760 2.218759 GCGTTGTATCGATTGCTACCTG 59.781 50.000 1.71 0.00 0.00 4.00
720 779 5.849357 TTACTTTGTGCGTTGTATCGATT 57.151 34.783 1.71 0.00 0.00 3.34
724 783 8.716619 TTTGTATTTACTTTGTGCGTTGTATC 57.283 30.769 0.00 0.00 0.00 2.24
727 786 7.995463 ATTTTGTATTTACTTTGTGCGTTGT 57.005 28.000 0.00 0.00 0.00 3.32
781 845 2.671396 CGTAGTGATCCCTCCGTTTTTG 59.329 50.000 0.00 0.00 0.00 2.44
784 848 1.843368 TCGTAGTGATCCCTCCGTTT 58.157 50.000 0.00 0.00 0.00 3.60
799 879 7.331440 TGCTTTAAATTATCGGTGAGTTTCGTA 59.669 33.333 0.00 0.00 0.00 3.43
824 904 7.667043 AGTTGTTGGTATGTGTATGTACTTG 57.333 36.000 0.00 0.00 0.00 3.16
868 959 7.331791 GTCAGAGATGGGAATAAACTAGTGTT 58.668 38.462 0.00 0.00 38.16 3.32
895 986 2.601979 CGATTCTGCGTGCACAAGAAAA 60.602 45.455 26.73 12.64 0.00 2.29
991 1097 3.981071 ATGCTTATATAGGAAGGCGCA 57.019 42.857 10.83 0.00 0.00 6.09
1029 1141 6.522054 CGGATTTAATTTAGTCCTGCTCCTA 58.478 40.000 4.73 0.00 0.00 2.94
1030 1142 5.368989 CGGATTTAATTTAGTCCTGCTCCT 58.631 41.667 4.73 0.00 0.00 3.69
1035 1147 5.273944 GCAAGCGGATTTAATTTAGTCCTG 58.726 41.667 4.73 0.00 0.00 3.86
1059 1172 4.283722 TGTCCTTTCTCCTAGGTTGTCTTC 59.716 45.833 9.08 0.00 34.29 2.87
1074 1188 3.917985 GTGTGTGTGTTTTGTGTCCTTTC 59.082 43.478 0.00 0.00 0.00 2.62
1076 1190 2.887783 TGTGTGTGTGTTTTGTGTCCTT 59.112 40.909 0.00 0.00 0.00 3.36
1080 1194 2.359214 TGTGTGTGTGTGTGTTTTGTGT 59.641 40.909 0.00 0.00 0.00 3.72
1081 1195 2.723658 GTGTGTGTGTGTGTGTTTTGTG 59.276 45.455 0.00 0.00 0.00 3.33
1083 1197 2.723658 GTGTGTGTGTGTGTGTGTTTTG 59.276 45.455 0.00 0.00 0.00 2.44
1084 1198 2.359214 TGTGTGTGTGTGTGTGTGTTTT 59.641 40.909 0.00 0.00 0.00 2.43
1086 1200 1.265635 GTGTGTGTGTGTGTGTGTGTT 59.734 47.619 0.00 0.00 0.00 3.32
1339 1511 3.606662 CGGATCCGGACATCGCCT 61.607 66.667 26.95 0.00 37.59 5.52
1372 1571 0.179067 AACCAAAGACGTCGAGGCAA 60.179 50.000 19.41 0.00 0.00 4.52
1373 1572 0.599204 GAACCAAAGACGTCGAGGCA 60.599 55.000 19.41 0.00 0.00 4.75
1508 1737 1.268625 CGTATCGCCTGCATAGTGGTA 59.731 52.381 0.00 0.00 0.00 3.25
1514 1743 0.241213 GCTCTCGTATCGCCTGCATA 59.759 55.000 0.00 0.00 0.00 3.14
1538 1767 1.248486 AGCACTTGTCGTCTCAGCTA 58.752 50.000 0.00 0.00 0.00 3.32
1574 8685 5.295292 CGATCTTCAATATTCACAAGCTGGT 59.705 40.000 0.00 0.00 0.00 4.00
1599 8710 1.482182 TCATCAGTTCATCACTCCGGG 59.518 52.381 0.00 0.00 30.92 5.73
1604 8719 6.040278 ACGTATCTGATCATCAGTTCATCACT 59.960 38.462 14.56 0.00 44.58 3.41
1662 8787 2.017782 GGGAGAGGAAGAAAAATCGCC 58.982 52.381 0.00 0.00 0.00 5.54
1669 8794 2.171840 CGACAGAGGGAGAGGAAGAAA 58.828 52.381 0.00 0.00 0.00 2.52
1713 8841 4.273724 TGTGCGCTAAACTGTAATCAACAA 59.726 37.500 9.73 0.00 37.74 2.83
1756 8884 9.232082 CGACAAAGAGTGAAATTTGAAACAATA 57.768 29.630 0.00 0.00 38.42 1.90
1829 9161 5.646606 ACAGAGAGCGAGAGAGAAAATTAC 58.353 41.667 0.00 0.00 0.00 1.89
1837 9169 1.351707 GCGACAGAGAGCGAGAGAG 59.648 63.158 0.00 0.00 0.00 3.20
1844 9176 0.456995 GTACAGTGGCGACAGAGAGC 60.457 60.000 0.00 0.00 44.46 4.09
1886 9974 2.223377 CCTCGAGTAACAAGCCACAAAC 59.777 50.000 12.31 0.00 0.00 2.93
1971 10079 5.220739 GCACTTGGTGAGCATTTCTATGTAG 60.221 44.000 1.57 0.00 35.23 2.74
2081 10189 2.323999 TTCTGGCAATTCCAATGGGT 57.676 45.000 0.00 0.00 46.01 4.51
2111 10219 8.704668 GGGGTCCTTTTTGTCAAATTCATATAT 58.295 33.333 0.00 0.00 0.00 0.86
2114 10222 5.247337 GGGGGTCCTTTTTGTCAAATTCATA 59.753 40.000 0.00 0.00 0.00 2.15
2156 10264 4.662961 CACGTGTCGCCTGCCTCA 62.663 66.667 7.58 0.00 0.00 3.86
2296 10405 2.032528 CTCCTCTTGTGGCGGCAA 59.967 61.111 15.50 0.00 0.00 4.52
2360 10469 1.303236 CACTTGATGGCCCCGTGAA 60.303 57.895 0.00 0.00 0.00 3.18
2362 10471 2.751436 CCACTTGATGGCCCCGTG 60.751 66.667 0.00 0.00 43.24 4.94
2371 10480 2.047274 CGGCGTGACCCACTTGAT 60.047 61.111 0.00 0.00 33.26 2.57
2372 10481 4.980805 GCGGCGTGACCCACTTGA 62.981 66.667 9.37 0.00 33.26 3.02
2381 10490 4.569023 CTAGCGATGGCGGCGTGA 62.569 66.667 9.10 0.00 46.35 4.35
2383 10492 4.271816 CTCTAGCGATGGCGGCGT 62.272 66.667 9.37 2.02 46.35 5.68
2394 10503 4.537433 CAGGGTGCCGCCTCTAGC 62.537 72.222 0.00 0.00 37.43 3.42
2395 10504 4.537433 GCAGGGTGCCGCCTCTAG 62.537 72.222 0.00 0.00 37.42 2.43
2434 10543 4.778415 CGTCGTCAGGCGTCAGGG 62.778 72.222 0.00 0.00 41.17 4.45
2449 10558 1.089920 GCTGTCATTGGAATCAGCGT 58.910 50.000 0.00 0.00 42.51 5.07
2455 10564 0.620556 AGGGTCGCTGTCATTGGAAT 59.379 50.000 0.00 0.00 0.00 3.01
2523 10632 1.379843 AGCGATTCCCGGGCAAAAT 60.380 52.632 18.49 11.15 39.04 1.82
2582 10691 3.482147 TGCTGTCGCATCCATTCAT 57.518 47.368 0.00 0.00 42.25 2.57
2648 10757 3.655777 AGGCGGGATATTTTAGGATTCCA 59.344 43.478 5.29 0.00 0.00 3.53
2651 10760 9.990868 AAATATTAGGCGGGATATTTTAGGATT 57.009 29.630 8.81 0.00 35.83 3.01
2698 10807 2.019249 CAGACGACAAATGATGGCCAT 58.981 47.619 20.96 20.96 36.99 4.40
2712 10821 4.338682 GTCTCCTTTTATAGGCTCAGACGA 59.661 45.833 0.00 0.00 44.37 4.20
2738 10847 0.257328 TGAGGATGACGAGAGCCTCT 59.743 55.000 18.87 0.00 45.58 3.69
2860 11973 4.478317 TCCAACACATATGGAGGGAAAGAT 59.522 41.667 7.80 0.00 41.98 2.40
2862 11975 4.235079 TCCAACACATATGGAGGGAAAG 57.765 45.455 7.80 0.00 41.98 2.62
2890 12003 3.954258 CCCTTTTATTGTTGCCTCTAGGG 59.046 47.826 0.00 0.00 34.36 3.53
2891 12004 4.600062 ACCCTTTTATTGTTGCCTCTAGG 58.400 43.478 0.00 0.00 38.53 3.02
2892 12005 7.881775 ATAACCCTTTTATTGTTGCCTCTAG 57.118 36.000 0.00 0.00 0.00 2.43
2893 12006 9.930158 ATAATAACCCTTTTATTGTTGCCTCTA 57.070 29.630 0.47 0.00 0.00 2.43
2894 12007 8.838649 ATAATAACCCTTTTATTGTTGCCTCT 57.161 30.769 0.47 0.00 0.00 3.69
2949 12062 9.203421 CGGACAATACAGTTATAGCATGAATAA 57.797 33.333 0.00 0.00 0.00 1.40
2950 12063 7.817478 CCGGACAATACAGTTATAGCATGAATA 59.183 37.037 0.00 0.00 0.00 1.75
2951 12064 6.650807 CCGGACAATACAGTTATAGCATGAAT 59.349 38.462 0.00 0.00 0.00 2.57
2952 12065 5.989168 CCGGACAATACAGTTATAGCATGAA 59.011 40.000 0.00 0.00 0.00 2.57
2953 12066 5.303333 TCCGGACAATACAGTTATAGCATGA 59.697 40.000 0.00 0.00 0.00 3.07
2954 12067 5.538118 TCCGGACAATACAGTTATAGCATG 58.462 41.667 0.00 0.00 0.00 4.06
2955 12068 5.801531 TCCGGACAATACAGTTATAGCAT 57.198 39.130 0.00 0.00 0.00 3.79
2956 12069 5.601583 TTCCGGACAATACAGTTATAGCA 57.398 39.130 1.83 0.00 0.00 3.49
2957 12070 6.128902 CGATTTCCGGACAATACAGTTATAGC 60.129 42.308 1.83 0.00 33.91 2.97
2958 12071 6.921857 ACGATTTCCGGACAATACAGTTATAG 59.078 38.462 1.83 0.00 43.93 1.31
2959 12072 6.808829 ACGATTTCCGGACAATACAGTTATA 58.191 36.000 1.83 0.00 43.93 0.98
2960 12073 5.667466 ACGATTTCCGGACAATACAGTTAT 58.333 37.500 1.83 0.00 43.93 1.89
2961 12074 5.075858 ACGATTTCCGGACAATACAGTTA 57.924 39.130 1.83 0.00 43.93 2.24
2962 12075 3.934068 ACGATTTCCGGACAATACAGTT 58.066 40.909 1.83 0.00 43.93 3.16
2963 12076 3.604875 ACGATTTCCGGACAATACAGT 57.395 42.857 1.83 6.28 43.93 3.55
2964 12077 6.698329 TGTATTACGATTTCCGGACAATACAG 59.302 38.462 1.83 5.71 41.28 2.74
2965 12078 6.476380 GTGTATTACGATTTCCGGACAATACA 59.524 38.462 1.83 13.77 42.39 2.29
2966 12079 6.870517 GTGTATTACGATTTCCGGACAATAC 58.129 40.000 1.83 11.52 43.93 1.89
2968 12081 5.978934 GTGTATTACGATTTCCGGACAAT 57.021 39.130 1.83 7.66 43.93 2.71
2982 12095 7.916977 TGGTCTATGTATTCACACGTGTATTAC 59.083 37.037 22.90 20.91 37.54 1.89
2983 12096 7.998580 TGGTCTATGTATTCACACGTGTATTA 58.001 34.615 22.90 9.93 37.54 0.98
2984 12097 6.869695 TGGTCTATGTATTCACACGTGTATT 58.130 36.000 22.90 11.42 37.54 1.89
2985 12098 6.459670 TGGTCTATGTATTCACACGTGTAT 57.540 37.500 22.90 14.96 37.54 2.29
2986 12099 5.900865 TGGTCTATGTATTCACACGTGTA 57.099 39.130 22.90 7.35 37.54 2.90
2987 12100 4.794278 TGGTCTATGTATTCACACGTGT 57.206 40.909 17.22 17.22 37.54 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.