Multiple sequence alignment - TraesCS4B01G310600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4B01G310600 | chr4B | 100.000 | 4675 | 0 | 0 | 1 | 4675 | 600674253 | 600669579 | 0.000000e+00 | 8634.0 |
1 | TraesCS4B01G310600 | chr4B | 87.500 | 832 | 94 | 9 | 2 | 828 | 51814835 | 51815661 | 0.000000e+00 | 952.0 |
2 | TraesCS4B01G310600 | chr4B | 89.037 | 675 | 70 | 4 | 3 | 674 | 166849540 | 166848867 | 0.000000e+00 | 833.0 |
3 | TraesCS4B01G310600 | chr4B | 84.375 | 64 | 9 | 1 | 4268 | 4330 | 4707067 | 4707004 | 1.400000e-05 | 62.1 |
4 | TraesCS4B01G310600 | chr4D | 96.434 | 1935 | 51 | 9 | 830 | 2757 | 476318074 | 476316151 | 0.000000e+00 | 3175.0 |
5 | TraesCS4B01G310600 | chr4D | 96.852 | 1239 | 31 | 5 | 2755 | 3988 | 476316066 | 476314831 | 0.000000e+00 | 2065.0 |
6 | TraesCS4B01G310600 | chr4D | 97.143 | 70 | 2 | 0 | 4115 | 4184 | 476314729 | 476314660 | 8.220000e-23 | 119.0 |
7 | TraesCS4B01G310600 | chr4A | 91.204 | 1262 | 74 | 20 | 2755 | 3989 | 683500255 | 683499004 | 0.000000e+00 | 1681.0 |
8 | TraesCS4B01G310600 | chr4A | 87.629 | 873 | 48 | 24 | 1906 | 2758 | 683501171 | 683500339 | 0.000000e+00 | 959.0 |
9 | TraesCS4B01G310600 | chr4A | 92.530 | 589 | 32 | 3 | 1325 | 1909 | 683501844 | 683501264 | 0.000000e+00 | 833.0 |
10 | TraesCS4B01G310600 | chr4A | 93.213 | 442 | 24 | 5 | 821 | 1258 | 683502573 | 683502134 | 0.000000e+00 | 645.0 |
11 | TraesCS4B01G310600 | chr4A | 89.815 | 216 | 18 | 4 | 4115 | 4329 | 683498896 | 683498684 | 1.660000e-69 | 274.0 |
12 | TraesCS4B01G310600 | chr4A | 81.176 | 255 | 21 | 13 | 4448 | 4675 | 683498674 | 683498420 | 3.720000e-41 | 180.0 |
13 | TraesCS4B01G310600 | chr4A | 77.778 | 234 | 28 | 18 | 2869 | 3099 | 41899173 | 41899385 | 6.350000e-24 | 122.0 |
14 | TraesCS4B01G310600 | chr5D | 87.886 | 842 | 84 | 10 | 2 | 829 | 463969145 | 463969982 | 0.000000e+00 | 974.0 |
15 | TraesCS4B01G310600 | chr5D | 90.640 | 641 | 56 | 3 | 2 | 641 | 408756903 | 408756266 | 0.000000e+00 | 848.0 |
16 | TraesCS4B01G310600 | chr5D | 89.189 | 111 | 10 | 2 | 4340 | 4449 | 439260123 | 439260232 | 2.270000e-28 | 137.0 |
17 | TraesCS4B01G310600 | chr5D | 77.872 | 235 | 28 | 16 | 2869 | 3099 | 34271944 | 34271730 | 1.770000e-24 | 124.0 |
18 | TraesCS4B01G310600 | chr5D | 93.023 | 86 | 4 | 2 | 4017 | 4102 | 416973418 | 416973501 | 1.770000e-24 | 124.0 |
19 | TraesCS4B01G310600 | chr5D | 84.375 | 64 | 9 | 1 | 4268 | 4330 | 310276715 | 310276652 | 1.400000e-05 | 62.1 |
20 | TraesCS4B01G310600 | chr1D | 88.384 | 792 | 84 | 6 | 3 | 789 | 345832614 | 345833402 | 0.000000e+00 | 946.0 |
21 | TraesCS4B01G310600 | chr1D | 90.351 | 114 | 11 | 0 | 4336 | 4449 | 29961351 | 29961238 | 2.910000e-32 | 150.0 |
22 | TraesCS4B01G310600 | chr1D | 88.889 | 117 | 10 | 2 | 4336 | 4449 | 479763137 | 479763021 | 1.750000e-29 | 141.0 |
23 | TraesCS4B01G310600 | chr1D | 97.143 | 35 | 0 | 1 | 4297 | 4330 | 245217223 | 245217257 | 1.820000e-04 | 58.4 |
24 | TraesCS4B01G310600 | chr2A | 87.356 | 783 | 86 | 11 | 7 | 783 | 510801047 | 510800272 | 0.000000e+00 | 885.0 |
25 | TraesCS4B01G310600 | chr2A | 78.298 | 235 | 27 | 15 | 2869 | 3099 | 554014473 | 554014259 | 3.800000e-26 | 130.0 |
26 | TraesCS4B01G310600 | chr2A | 87.037 | 108 | 12 | 2 | 2139 | 2246 | 149211774 | 149211669 | 2.280000e-23 | 121.0 |
27 | TraesCS4B01G310600 | chr2A | 87.500 | 64 | 7 | 1 | 4268 | 4330 | 695156855 | 695156792 | 6.490000e-09 | 73.1 |
28 | TraesCS4B01G310600 | chr1A | 88.451 | 736 | 75 | 8 | 6 | 740 | 430228523 | 430229249 | 0.000000e+00 | 880.0 |
29 | TraesCS4B01G310600 | chr1A | 97.222 | 36 | 0 | 1 | 4297 | 4331 | 306569161 | 306569196 | 5.050000e-05 | 60.2 |
30 | TraesCS4B01G310600 | chr1A | 97.143 | 35 | 0 | 1 | 4297 | 4330 | 527180458 | 527180424 | 1.820000e-04 | 58.4 |
31 | TraesCS4B01G310600 | chr6A | 86.717 | 798 | 91 | 9 | 6 | 794 | 66299309 | 66298518 | 0.000000e+00 | 872.0 |
32 | TraesCS4B01G310600 | chr6A | 85.938 | 64 | 7 | 2 | 4268 | 4330 | 575302633 | 575302695 | 3.020000e-07 | 67.6 |
33 | TraesCS4B01G310600 | chr5A | 86.076 | 790 | 83 | 15 | 4 | 784 | 387251703 | 387252474 | 0.000000e+00 | 824.0 |
34 | TraesCS4B01G310600 | chr5A | 91.667 | 84 | 6 | 1 | 4019 | 4102 | 564175468 | 564175550 | 1.060000e-21 | 115.0 |
35 | TraesCS4B01G310600 | chr5A | 86.316 | 95 | 9 | 4 | 4009 | 4102 | 640739801 | 640739710 | 2.980000e-17 | 100.0 |
36 | TraesCS4B01G310600 | chr3A | 83.430 | 344 | 25 | 12 | 1399 | 1742 | 323691 | 323380 | 1.650000e-74 | 291.0 |
37 | TraesCS4B01G310600 | chr3A | 84.937 | 239 | 25 | 7 | 2094 | 2329 | 402084069 | 402083839 | 1.010000e-56 | 231.0 |
38 | TraesCS4B01G310600 | chr7D | 83.810 | 315 | 27 | 8 | 1456 | 1747 | 575915241 | 575914928 | 1.280000e-70 | 278.0 |
39 | TraesCS4B01G310600 | chr3B | 82.661 | 248 | 36 | 7 | 2087 | 2329 | 42700332 | 42700087 | 3.660000e-51 | 213.0 |
40 | TraesCS4B01G310600 | chr3B | 100.000 | 28 | 0 | 0 | 3992 | 4019 | 429973611 | 429973584 | 8.000000e-03 | 52.8 |
41 | TraesCS4B01G310600 | chr2D | 78.495 | 279 | 40 | 14 | 3422 | 3693 | 433218912 | 433219177 | 1.040000e-36 | 165.0 |
42 | TraesCS4B01G310600 | chr2D | 84.967 | 153 | 10 | 8 | 2091 | 2241 | 152095749 | 152095890 | 4.880000e-30 | 143.0 |
43 | TraesCS4B01G310600 | chr2D | 77.872 | 235 | 30 | 14 | 2869 | 3099 | 433218663 | 433218879 | 4.910000e-25 | 126.0 |
44 | TraesCS4B01G310600 | chr5B | 90.179 | 112 | 11 | 0 | 4336 | 4447 | 664418069 | 664418180 | 3.770000e-31 | 147.0 |
45 | TraesCS4B01G310600 | chr2B | 84.713 | 157 | 11 | 5 | 2091 | 2246 | 210454936 | 210455080 | 1.360000e-30 | 145.0 |
46 | TraesCS4B01G310600 | chr6B | 94.118 | 85 | 4 | 1 | 4017 | 4101 | 22555600 | 22555683 | 1.370000e-25 | 128.0 |
47 | TraesCS4B01G310600 | chr6B | 88.043 | 92 | 9 | 2 | 4014 | 4104 | 615187030 | 615186940 | 1.780000e-19 | 108.0 |
48 | TraesCS4B01G310600 | chr3D | 93.023 | 86 | 4 | 2 | 4017 | 4102 | 317739458 | 317739375 | 1.770000e-24 | 124.0 |
49 | TraesCS4B01G310600 | chr3D | 100.000 | 28 | 0 | 0 | 3992 | 4019 | 613017389 | 613017362 | 8.000000e-03 | 52.8 |
50 | TraesCS4B01G310600 | chr6D | 92.857 | 84 | 5 | 1 | 4018 | 4101 | 177794273 | 177794191 | 2.280000e-23 | 121.0 |
51 | TraesCS4B01G310600 | chr6D | 86.957 | 92 | 10 | 2 | 4014 | 4104 | 409547376 | 409547286 | 8.280000e-18 | 102.0 |
52 | TraesCS4B01G310600 | chr7B | 86.517 | 89 | 10 | 2 | 4014 | 4101 | 561753556 | 561753469 | 3.850000e-16 | 97.1 |
53 | TraesCS4B01G310600 | chr7B | 85.714 | 63 | 7 | 2 | 4268 | 4329 | 28687748 | 28687809 | 1.090000e-06 | 65.8 |
54 | TraesCS4B01G310600 | chr7B | 96.875 | 32 | 1 | 0 | 3988 | 4019 | 135716516 | 135716547 | 2.000000e-03 | 54.7 |
55 | TraesCS4B01G310600 | chr7B | 100.000 | 28 | 0 | 0 | 3992 | 4019 | 56386863 | 56386836 | 8.000000e-03 | 52.8 |
56 | TraesCS4B01G310600 | chr7A | 94.118 | 34 | 2 | 0 | 3986 | 4019 | 44884945 | 44884978 | 8.000000e-03 | 52.8 |
57 | TraesCS4B01G310600 | chr1B | 100.000 | 28 | 0 | 0 | 3992 | 4019 | 137449221 | 137449194 | 8.000000e-03 | 52.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4B01G310600 | chr4B | 600669579 | 600674253 | 4674 | True | 8634.000000 | 8634 | 100.000000 | 1 | 4675 | 1 | chr4B.!!$R3 | 4674 |
1 | TraesCS4B01G310600 | chr4B | 51814835 | 51815661 | 826 | False | 952.000000 | 952 | 87.500000 | 2 | 828 | 1 | chr4B.!!$F1 | 826 |
2 | TraesCS4B01G310600 | chr4B | 166848867 | 166849540 | 673 | True | 833.000000 | 833 | 89.037000 | 3 | 674 | 1 | chr4B.!!$R2 | 671 |
3 | TraesCS4B01G310600 | chr4D | 476314660 | 476318074 | 3414 | True | 1786.333333 | 3175 | 96.809667 | 830 | 4184 | 3 | chr4D.!!$R1 | 3354 |
4 | TraesCS4B01G310600 | chr4A | 683498420 | 683502573 | 4153 | True | 762.000000 | 1681 | 89.261167 | 821 | 4675 | 6 | chr4A.!!$R1 | 3854 |
5 | TraesCS4B01G310600 | chr5D | 463969145 | 463969982 | 837 | False | 974.000000 | 974 | 87.886000 | 2 | 829 | 1 | chr5D.!!$F3 | 827 |
6 | TraesCS4B01G310600 | chr5D | 408756266 | 408756903 | 637 | True | 848.000000 | 848 | 90.640000 | 2 | 641 | 1 | chr5D.!!$R3 | 639 |
7 | TraesCS4B01G310600 | chr1D | 345832614 | 345833402 | 788 | False | 946.000000 | 946 | 88.384000 | 3 | 789 | 1 | chr1D.!!$F2 | 786 |
8 | TraesCS4B01G310600 | chr2A | 510800272 | 510801047 | 775 | True | 885.000000 | 885 | 87.356000 | 7 | 783 | 1 | chr2A.!!$R2 | 776 |
9 | TraesCS4B01G310600 | chr1A | 430228523 | 430229249 | 726 | False | 880.000000 | 880 | 88.451000 | 6 | 740 | 1 | chr1A.!!$F2 | 734 |
10 | TraesCS4B01G310600 | chr6A | 66298518 | 66299309 | 791 | True | 872.000000 | 872 | 86.717000 | 6 | 794 | 1 | chr6A.!!$R1 | 788 |
11 | TraesCS4B01G310600 | chr5A | 387251703 | 387252474 | 771 | False | 824.000000 | 824 | 86.076000 | 4 | 784 | 1 | chr5A.!!$F1 | 780 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
960 | 997 | 0.035176 | TAGGTTTTTCGTCCCCGTGG | 59.965 | 55.0 | 0.00 | 0.00 | 35.01 | 4.94 | F |
2150 | 2513 | 0.881796 | GGTAAGAGTTGGCTTGCCAC | 59.118 | 55.0 | 14.52 | 9.59 | 46.18 | 5.01 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2898 | 3367 | 1.709147 | CCTGCACGCAAGGTAGATGC | 61.709 | 60.0 | 0.0 | 0.0 | 46.39 | 3.91 | R |
4086 | 4583 | 0.106116 | ACATCTACTCCCTCCGTCCC | 60.106 | 60.0 | 0.0 | 0.0 | 0.00 | 4.46 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
27 | 28 | 2.034939 | TGCAGTGCTCAAATGTCTTTGG | 59.965 | 45.455 | 17.60 | 0.00 | 41.74 | 3.28 |
64 | 65 | 3.031013 | TCATGCTCCTCCGATGAACTTA | 58.969 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
67 | 68 | 2.427453 | TGCTCCTCCGATGAACTTAGAC | 59.573 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
105 | 106 | 7.949006 | CCACTACAATAAGGGATACTACCTAGT | 59.051 | 40.741 | 0.00 | 0.00 | 37.35 | 2.57 |
157 | 158 | 5.560722 | TTGTGAAGACTATCTCAAACCCA | 57.439 | 39.130 | 0.00 | 0.00 | 31.85 | 4.51 |
171 | 173 | 1.142688 | AACCCAGTCCAGGAGGCAAT | 61.143 | 55.000 | 0.00 | 0.00 | 33.74 | 3.56 |
214 | 216 | 0.465278 | GGAGGCTTGCAGGAAGGATC | 60.465 | 60.000 | 0.00 | 0.00 | 31.56 | 3.36 |
353 | 356 | 0.109342 | ATTATTGGGAGCGAGCAGGG | 59.891 | 55.000 | 0.00 | 0.00 | 0.00 | 4.45 |
426 | 429 | 0.249120 | TTGATCACCAGGTACCAGCG | 59.751 | 55.000 | 15.94 | 2.83 | 0.00 | 5.18 |
470 | 473 | 0.464735 | CGTCAGGAGATCCGAGACCT | 60.465 | 60.000 | 16.67 | 0.00 | 40.44 | 3.85 |
489 | 492 | 5.246203 | AGACCTACAAGTGCATCAAGAACTA | 59.754 | 40.000 | 0.00 | 0.00 | 33.87 | 2.24 |
534 | 537 | 0.823356 | GAAGGCTCAAGGGCAACACA | 60.823 | 55.000 | 0.00 | 0.00 | 43.56 | 3.72 |
577 | 581 | 3.539563 | CGTGTTTGAATTATGAGCTTGCG | 59.460 | 43.478 | 0.00 | 0.00 | 0.00 | 4.85 |
578 | 582 | 3.301642 | GTGTTTGAATTATGAGCTTGCGC | 59.698 | 43.478 | 0.00 | 0.00 | 0.00 | 6.09 |
688 | 694 | 2.542020 | TTGTGCCGAATCTGAGTTGA | 57.458 | 45.000 | 0.00 | 0.00 | 0.00 | 3.18 |
743 | 765 | 3.319198 | GGAACCAGAGCCCCGACA | 61.319 | 66.667 | 0.00 | 0.00 | 0.00 | 4.35 |
754 | 786 | 1.485066 | AGCCCCGACATCGAAAATAGT | 59.515 | 47.619 | 2.09 | 0.00 | 43.02 | 2.12 |
766 | 798 | 1.810151 | GAAAATAGTGCCGACAAGCCA | 59.190 | 47.619 | 0.00 | 0.00 | 0.00 | 4.75 |
773 | 805 | 2.617274 | GCCGACAAGCCACCAAGAC | 61.617 | 63.158 | 0.00 | 0.00 | 0.00 | 3.01 |
798 | 830 | 3.427098 | GCTATTTTCCGCCTAAAAACGCT | 60.427 | 43.478 | 0.00 | 0.00 | 32.42 | 5.07 |
799 | 831 | 2.691984 | TTTTCCGCCTAAAAACGCTC | 57.308 | 45.000 | 0.00 | 0.00 | 0.00 | 5.03 |
800 | 832 | 0.876399 | TTTCCGCCTAAAAACGCTCC | 59.124 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
804 | 838 | 3.047718 | GCCTAAAAACGCTCCGGGC | 62.048 | 63.158 | 0.00 | 2.69 | 37.64 | 6.13 |
832 | 866 | 1.327303 | CTCGAGATGCTCTTAGGGCT | 58.673 | 55.000 | 6.58 | 0.00 | 0.00 | 5.19 |
857 | 891 | 9.762381 | CTAGGATGACCTAACTATCTATTTCCT | 57.238 | 37.037 | 0.00 | 0.00 | 46.59 | 3.36 |
859 | 893 | 7.038658 | AGGATGACCTAACTATCTATTTCCTGC | 60.039 | 40.741 | 0.00 | 0.00 | 45.83 | 4.85 |
960 | 997 | 0.035176 | TAGGTTTTTCGTCCCCGTGG | 59.965 | 55.000 | 0.00 | 0.00 | 35.01 | 4.94 |
1414 | 1674 | 7.751047 | TGTTTCAGCGTATAGTTTAGTGATC | 57.249 | 36.000 | 0.00 | 0.00 | 0.00 | 2.92 |
1439 | 1699 | 2.359900 | CTGAACCTATGGCCTTGTCAC | 58.640 | 52.381 | 3.32 | 0.00 | 0.00 | 3.67 |
1440 | 1700 | 1.985159 | TGAACCTATGGCCTTGTCACT | 59.015 | 47.619 | 3.32 | 0.00 | 0.00 | 3.41 |
1441 | 1701 | 2.375174 | TGAACCTATGGCCTTGTCACTT | 59.625 | 45.455 | 3.32 | 0.00 | 0.00 | 3.16 |
1442 | 1702 | 2.496899 | ACCTATGGCCTTGTCACTTG | 57.503 | 50.000 | 3.32 | 0.00 | 0.00 | 3.16 |
1443 | 1703 | 1.705186 | ACCTATGGCCTTGTCACTTGT | 59.295 | 47.619 | 3.32 | 0.00 | 0.00 | 3.16 |
1444 | 1704 | 2.290323 | ACCTATGGCCTTGTCACTTGTC | 60.290 | 50.000 | 3.32 | 0.00 | 0.00 | 3.18 |
1445 | 1705 | 2.290260 | CCTATGGCCTTGTCACTTGTCA | 60.290 | 50.000 | 3.32 | 0.00 | 0.00 | 3.58 |
1516 | 1776 | 4.273235 | GTGTTGGATGATTGCGATGTATGA | 59.727 | 41.667 | 0.00 | 0.00 | 0.00 | 2.15 |
1569 | 1829 | 1.202794 | TGTGTGCTTCCATCAGCTCAA | 60.203 | 47.619 | 0.00 | 0.00 | 43.13 | 3.02 |
1596 | 1856 | 4.389374 | CCAGGAGCAAAGTCTTCACTTAA | 58.611 | 43.478 | 0.00 | 0.00 | 42.45 | 1.85 |
1725 | 1985 | 1.948611 | GCGACTTAACCTGCCAATGGA | 60.949 | 52.381 | 2.05 | 0.00 | 0.00 | 3.41 |
1773 | 2033 | 1.878953 | CCATCCGGGTAATGCTGTAC | 58.121 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1852 | 2116 | 7.736447 | ACAAAATGTTTGTTGGAGAAAAACA | 57.264 | 28.000 | 0.54 | 3.00 | 45.08 | 2.83 |
1925 | 2287 | 9.911788 | AGATGATATTTGTCTATCAGTTGGTTT | 57.088 | 29.630 | 0.00 | 0.00 | 40.48 | 3.27 |
1946 | 2308 | 9.092876 | TGGTTTTCTAAAATTAGCAAAACACAG | 57.907 | 29.630 | 23.52 | 0.00 | 38.20 | 3.66 |
1950 | 2312 | 6.212955 | TCTAAAATTAGCAAAACACAGGCAC | 58.787 | 36.000 | 0.00 | 0.00 | 0.00 | 5.01 |
2054 | 2417 | 8.056407 | AGTTTGGGAATCTTAGCTTGTTTATC | 57.944 | 34.615 | 0.00 | 0.00 | 0.00 | 1.75 |
2150 | 2513 | 0.881796 | GGTAAGAGTTGGCTTGCCAC | 59.118 | 55.000 | 14.52 | 9.59 | 46.18 | 5.01 |
2200 | 2563 | 6.407299 | CCTCATTTGGCCAACTATTTAGCAAT | 60.407 | 38.462 | 20.35 | 1.33 | 0.00 | 3.56 |
2286 | 2649 | 1.949525 | CCAAGATTTGATAGGCACCCG | 59.050 | 52.381 | 0.00 | 0.00 | 0.00 | 5.28 |
2322 | 2690 | 2.236489 | AGTATGGGCAGCAAACCAAT | 57.764 | 45.000 | 0.00 | 0.00 | 40.73 | 3.16 |
2402 | 2779 | 6.014156 | CCCCTTGTGGTGATTTTTATGGTTAA | 60.014 | 38.462 | 0.00 | 0.00 | 0.00 | 2.01 |
2598 | 2976 | 8.362639 | GGATGCATATCTTTCATGGTTATTGTT | 58.637 | 33.333 | 0.00 | 0.00 | 33.68 | 2.83 |
2740 | 3120 | 2.098607 | CCATATTGCTGCACTGGTTCAG | 59.901 | 50.000 | 0.00 | 0.00 | 37.52 | 3.02 |
2898 | 3367 | 2.165167 | CACCTGGCATGCTTATATGGG | 58.835 | 52.381 | 18.92 | 11.20 | 0.00 | 4.00 |
3176 | 3661 | 3.119316 | ACAGGCTTCACTGAGATAGTTCG | 60.119 | 47.826 | 0.00 | 0.00 | 40.97 | 3.95 |
3288 | 3773 | 2.036346 | TGACCACTCGATCATATGCCAG | 59.964 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
3405 | 3890 | 1.238439 | CATGGACACCGTCAAGCTTT | 58.762 | 50.000 | 0.00 | 0.00 | 33.68 | 3.51 |
3425 | 3910 | 4.233635 | CTCGAAGCTGGCGCATGC | 62.234 | 66.667 | 10.83 | 13.16 | 39.10 | 4.06 |
3441 | 3926 | 2.423373 | GCATGCCCCAAGAAGGAGAATA | 60.423 | 50.000 | 6.36 | 0.00 | 41.22 | 1.75 |
3491 | 3976 | 2.033049 | CGATCAAGATACCGAAGTCCGT | 59.967 | 50.000 | 0.00 | 0.00 | 36.31 | 4.69 |
3534 | 4019 | 2.029020 | GTCGAGGCCAGCATACATATGA | 60.029 | 50.000 | 10.38 | 0.00 | 35.75 | 2.15 |
3543 | 4028 | 4.683320 | CCAGCATACATATGACGAACTGAG | 59.317 | 45.833 | 10.38 | 1.92 | 35.75 | 3.35 |
3598 | 4086 | 1.632409 | AGTCATGATGAGTGGGCAGTT | 59.368 | 47.619 | 1.21 | 0.00 | 0.00 | 3.16 |
3705 | 4194 | 3.027412 | TGGAGTTATCTGCAGAGAGGAC | 58.973 | 50.000 | 22.96 | 13.46 | 37.12 | 3.85 |
3706 | 4195 | 3.027412 | GGAGTTATCTGCAGAGAGGACA | 58.973 | 50.000 | 22.96 | 0.00 | 32.20 | 4.02 |
3707 | 4196 | 3.640967 | GGAGTTATCTGCAGAGAGGACAT | 59.359 | 47.826 | 22.96 | 5.74 | 32.20 | 3.06 |
3777 | 4271 | 3.406764 | AGGCACAATCAGTTGAACTCTC | 58.593 | 45.455 | 0.00 | 0.00 | 38.71 | 3.20 |
3778 | 4272 | 3.141398 | GGCACAATCAGTTGAACTCTCA | 58.859 | 45.455 | 0.00 | 0.00 | 38.71 | 3.27 |
3779 | 4273 | 3.755378 | GGCACAATCAGTTGAACTCTCAT | 59.245 | 43.478 | 0.00 | 0.00 | 38.71 | 2.90 |
3780 | 4274 | 4.217118 | GGCACAATCAGTTGAACTCTCATT | 59.783 | 41.667 | 0.00 | 0.00 | 38.71 | 2.57 |
3781 | 4275 | 5.412594 | GGCACAATCAGTTGAACTCTCATTA | 59.587 | 40.000 | 0.00 | 0.00 | 38.71 | 1.90 |
3828 | 4325 | 5.533154 | TCTTACCCTTGCGAGAATTTTGAAA | 59.467 | 36.000 | 1.22 | 0.00 | 0.00 | 2.69 |
3837 | 4334 | 7.176285 | TGCGAGAATTTTGAAAAAGGAAATG | 57.824 | 32.000 | 0.00 | 0.00 | 0.00 | 2.32 |
3878 | 4375 | 6.092807 | CCTGAGACTGAATTGCTTAAGTTACC | 59.907 | 42.308 | 4.02 | 0.00 | 0.00 | 2.85 |
3881 | 4378 | 4.648651 | ACTGAATTGCTTAAGTTACCCGT | 58.351 | 39.130 | 4.02 | 0.00 | 0.00 | 5.28 |
3965 | 4462 | 5.344743 | TCTTATGTGTTTGGTGGCAAAAA | 57.655 | 34.783 | 0.00 | 0.00 | 0.00 | 1.94 |
4012 | 4509 | 9.916360 | AAAAATACTCCCTCCGTAAAGAAATAT | 57.084 | 29.630 | 0.00 | 0.00 | 0.00 | 1.28 |
4016 | 4513 | 7.909485 | ACTCCCTCCGTAAAGAAATATAAGA | 57.091 | 36.000 | 0.00 | 0.00 | 0.00 | 2.10 |
4017 | 4514 | 7.724287 | ACTCCCTCCGTAAAGAAATATAAGAC | 58.276 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
4019 | 4516 | 7.949434 | TCCCTCCGTAAAGAAATATAAGACTC | 58.051 | 38.462 | 0.00 | 0.00 | 0.00 | 3.36 |
4020 | 4517 | 7.015001 | TCCCTCCGTAAAGAAATATAAGACTCC | 59.985 | 40.741 | 0.00 | 0.00 | 0.00 | 3.85 |
4021 | 4518 | 7.153315 | CCTCCGTAAAGAAATATAAGACTCCC | 58.847 | 42.308 | 0.00 | 0.00 | 0.00 | 4.30 |
4022 | 4519 | 7.015389 | CCTCCGTAAAGAAATATAAGACTCCCT | 59.985 | 40.741 | 0.00 | 0.00 | 0.00 | 4.20 |
4024 | 4521 | 8.419442 | TCCGTAAAGAAATATAAGACTCCCTTC | 58.581 | 37.037 | 0.00 | 0.00 | 36.34 | 3.46 |
4027 | 4524 | 9.247126 | GTAAAGAAATATAAGACTCCCTTCGTC | 57.753 | 37.037 | 0.00 | 0.00 | 36.34 | 4.20 |
4028 | 4525 | 7.663043 | AAGAAATATAAGACTCCCTTCGTCT | 57.337 | 36.000 | 0.00 | 0.00 | 43.20 | 4.18 |
4029 | 4526 | 7.279750 | AGAAATATAAGACTCCCTTCGTCTC | 57.720 | 40.000 | 0.00 | 0.00 | 40.65 | 3.36 |
4030 | 4527 | 6.834451 | AGAAATATAAGACTCCCTTCGTCTCA | 59.166 | 38.462 | 0.00 | 0.00 | 40.65 | 3.27 |
4031 | 4528 | 7.507616 | AGAAATATAAGACTCCCTTCGTCTCAT | 59.492 | 37.037 | 0.00 | 0.00 | 40.65 | 2.90 |
4032 | 4529 | 8.707796 | AAATATAAGACTCCCTTCGTCTCATA | 57.292 | 34.615 | 0.00 | 0.00 | 40.65 | 2.15 |
4033 | 4530 | 8.707796 | AATATAAGACTCCCTTCGTCTCATAA | 57.292 | 34.615 | 0.00 | 0.00 | 40.65 | 1.90 |
4035 | 4532 | 9.976776 | ATATAAGACTCCCTTCGTCTCATAATA | 57.023 | 33.333 | 0.00 | 0.00 | 40.65 | 0.98 |
4036 | 4533 | 8.887264 | ATAAGACTCCCTTCGTCTCATAATAT | 57.113 | 34.615 | 0.00 | 0.00 | 40.65 | 1.28 |
4039 | 4536 | 8.343168 | AGACTCCCTTCGTCTCATAATATAAG | 57.657 | 38.462 | 0.00 | 0.00 | 37.13 | 1.73 |
4040 | 4537 | 8.164733 | AGACTCCCTTCGTCTCATAATATAAGA | 58.835 | 37.037 | 0.00 | 0.00 | 37.13 | 2.10 |
4041 | 4538 | 8.707796 | ACTCCCTTCGTCTCATAATATAAGAA | 57.292 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
4092 | 4589 | 5.806366 | AACGTTCTTATATTTTGGGACGG | 57.194 | 39.130 | 0.00 | 0.00 | 0.00 | 4.79 |
4093 | 4590 | 5.088680 | ACGTTCTTATATTTTGGGACGGA | 57.911 | 39.130 | 0.00 | 0.00 | 0.00 | 4.69 |
4094 | 4591 | 5.114081 | ACGTTCTTATATTTTGGGACGGAG | 58.886 | 41.667 | 0.00 | 0.00 | 0.00 | 4.63 |
4095 | 4592 | 4.510340 | CGTTCTTATATTTTGGGACGGAGG | 59.490 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
4096 | 4593 | 4.699925 | TCTTATATTTTGGGACGGAGGG | 57.300 | 45.455 | 0.00 | 0.00 | 0.00 | 4.30 |
4097 | 4594 | 4.300345 | TCTTATATTTTGGGACGGAGGGA | 58.700 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
4098 | 4595 | 4.347000 | TCTTATATTTTGGGACGGAGGGAG | 59.653 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
4099 | 4596 | 1.961133 | TATTTTGGGACGGAGGGAGT | 58.039 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4100 | 4597 | 1.961133 | ATTTTGGGACGGAGGGAGTA | 58.039 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
4101 | 4598 | 1.272807 | TTTTGGGACGGAGGGAGTAG | 58.727 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
4102 | 4599 | 0.410663 | TTTGGGACGGAGGGAGTAGA | 59.589 | 55.000 | 0.00 | 0.00 | 0.00 | 2.59 |
4103 | 4600 | 0.635009 | TTGGGACGGAGGGAGTAGAT | 59.365 | 55.000 | 0.00 | 0.00 | 0.00 | 1.98 |
4104 | 4601 | 0.106167 | TGGGACGGAGGGAGTAGATG | 60.106 | 60.000 | 0.00 | 0.00 | 0.00 | 2.90 |
4105 | 4602 | 0.106116 | GGGACGGAGGGAGTAGATGT | 60.106 | 60.000 | 0.00 | 0.00 | 0.00 | 3.06 |
4106 | 4603 | 1.320507 | GGACGGAGGGAGTAGATGTC | 58.679 | 60.000 | 0.00 | 0.00 | 0.00 | 3.06 |
4107 | 4604 | 1.409802 | GGACGGAGGGAGTAGATGTCA | 60.410 | 57.143 | 0.00 | 0.00 | 0.00 | 3.58 |
4108 | 4605 | 1.950909 | GACGGAGGGAGTAGATGTCAG | 59.049 | 57.143 | 0.00 | 0.00 | 0.00 | 3.51 |
4109 | 4606 | 1.564818 | ACGGAGGGAGTAGATGTCAGA | 59.435 | 52.381 | 0.00 | 0.00 | 0.00 | 3.27 |
4110 | 4607 | 2.226330 | CGGAGGGAGTAGATGTCAGAG | 58.774 | 57.143 | 0.00 | 0.00 | 0.00 | 3.35 |
4111 | 4608 | 2.158740 | CGGAGGGAGTAGATGTCAGAGA | 60.159 | 54.545 | 0.00 | 0.00 | 0.00 | 3.10 |
4112 | 4609 | 3.486383 | GGAGGGAGTAGATGTCAGAGAG | 58.514 | 54.545 | 0.00 | 0.00 | 0.00 | 3.20 |
4113 | 4610 | 3.486383 | GAGGGAGTAGATGTCAGAGAGG | 58.514 | 54.545 | 0.00 | 0.00 | 0.00 | 3.69 |
4137 | 4635 | 6.017400 | ACATTGGAAAGAGCAGTAATGTTG | 57.983 | 37.500 | 0.00 | 0.00 | 35.83 | 3.33 |
4140 | 4638 | 6.463995 | TTGGAAAGAGCAGTAATGTTGTTT | 57.536 | 33.333 | 1.92 | 1.92 | 0.00 | 2.83 |
4181 | 4679 | 5.867903 | TGGTTCAATGTTTTCCATGTCTT | 57.132 | 34.783 | 0.00 | 0.00 | 32.82 | 3.01 |
4238 | 4736 | 4.836125 | TGTTGAAATCTTGCTGGAACTC | 57.164 | 40.909 | 0.00 | 0.00 | 0.00 | 3.01 |
4245 | 4743 | 7.394016 | TGAAATCTTGCTGGAACTCTGTATAA | 58.606 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
4249 | 4747 | 7.615582 | TCTTGCTGGAACTCTGTATAAAATG | 57.384 | 36.000 | 0.00 | 0.00 | 0.00 | 2.32 |
4251 | 4749 | 5.252547 | TGCTGGAACTCTGTATAAAATGCA | 58.747 | 37.500 | 0.00 | 0.00 | 0.00 | 3.96 |
4333 | 4831 | 8.910351 | AAGTAATGATCTAAATGTCTTAGGCC | 57.090 | 34.615 | 0.00 | 0.00 | 0.00 | 5.19 |
4334 | 4832 | 7.454225 | AGTAATGATCTAAATGTCTTAGGCCC | 58.546 | 38.462 | 0.00 | 0.00 | 0.00 | 5.80 |
4335 | 4833 | 6.521527 | AATGATCTAAATGTCTTAGGCCCT | 57.478 | 37.500 | 0.00 | 0.00 | 0.00 | 5.19 |
4336 | 4834 | 5.552870 | TGATCTAAATGTCTTAGGCCCTC | 57.447 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
4337 | 4835 | 4.968719 | TGATCTAAATGTCTTAGGCCCTCA | 59.031 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
4338 | 4836 | 5.608437 | TGATCTAAATGTCTTAGGCCCTCAT | 59.392 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
4339 | 4837 | 5.552870 | TCTAAATGTCTTAGGCCCTCATC | 57.447 | 43.478 | 0.00 | 0.00 | 0.00 | 2.92 |
4340 | 4838 | 4.968719 | TCTAAATGTCTTAGGCCCTCATCA | 59.031 | 41.667 | 0.00 | 0.00 | 0.00 | 3.07 |
4341 | 4839 | 4.591321 | AAATGTCTTAGGCCCTCATCAA | 57.409 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
4342 | 4840 | 4.591321 | AATGTCTTAGGCCCTCATCAAA | 57.409 | 40.909 | 0.00 | 0.00 | 0.00 | 2.69 |
4343 | 4841 | 4.591321 | ATGTCTTAGGCCCTCATCAAAA | 57.409 | 40.909 | 0.00 | 0.00 | 0.00 | 2.44 |
4344 | 4842 | 3.955471 | TGTCTTAGGCCCTCATCAAAAG | 58.045 | 45.455 | 0.00 | 0.00 | 0.00 | 2.27 |
4345 | 4843 | 2.685388 | GTCTTAGGCCCTCATCAAAAGC | 59.315 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4346 | 4844 | 2.027385 | CTTAGGCCCTCATCAAAAGCC | 58.973 | 52.381 | 0.00 | 0.00 | 44.20 | 4.35 |
4347 | 4845 | 0.998928 | TAGGCCCTCATCAAAAGCCA | 59.001 | 50.000 | 0.00 | 0.00 | 46.35 | 4.75 |
4348 | 4846 | 0.337428 | AGGCCCTCATCAAAAGCCAT | 59.663 | 50.000 | 0.00 | 0.00 | 46.35 | 4.40 |
4349 | 4847 | 1.570501 | AGGCCCTCATCAAAAGCCATA | 59.429 | 47.619 | 0.00 | 0.00 | 46.35 | 2.74 |
4350 | 4848 | 2.024080 | AGGCCCTCATCAAAAGCCATAA | 60.024 | 45.455 | 0.00 | 0.00 | 46.35 | 1.90 |
4351 | 4849 | 2.765699 | GGCCCTCATCAAAAGCCATAAA | 59.234 | 45.455 | 0.00 | 0.00 | 43.32 | 1.40 |
4352 | 4850 | 3.197549 | GGCCCTCATCAAAAGCCATAAAA | 59.802 | 43.478 | 0.00 | 0.00 | 43.32 | 1.52 |
4353 | 4851 | 4.436332 | GCCCTCATCAAAAGCCATAAAAG | 58.564 | 43.478 | 0.00 | 0.00 | 0.00 | 2.27 |
4354 | 4852 | 4.436332 | CCCTCATCAAAAGCCATAAAAGC | 58.564 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
4355 | 4853 | 4.436332 | CCTCATCAAAAGCCATAAAAGCC | 58.564 | 43.478 | 0.00 | 0.00 | 0.00 | 4.35 |
4356 | 4854 | 4.436332 | CTCATCAAAAGCCATAAAAGCCC | 58.564 | 43.478 | 0.00 | 0.00 | 0.00 | 5.19 |
4357 | 4855 | 3.197549 | TCATCAAAAGCCATAAAAGCCCC | 59.802 | 43.478 | 0.00 | 0.00 | 0.00 | 5.80 |
4358 | 4856 | 2.614259 | TCAAAAGCCATAAAAGCCCCA | 58.386 | 42.857 | 0.00 | 0.00 | 0.00 | 4.96 |
4359 | 4857 | 2.975489 | TCAAAAGCCATAAAAGCCCCAA | 59.025 | 40.909 | 0.00 | 0.00 | 0.00 | 4.12 |
4360 | 4858 | 3.392616 | TCAAAAGCCATAAAAGCCCCAAA | 59.607 | 39.130 | 0.00 | 0.00 | 0.00 | 3.28 |
4361 | 4859 | 4.140536 | CAAAAGCCATAAAAGCCCCAAAA | 58.859 | 39.130 | 0.00 | 0.00 | 0.00 | 2.44 |
4362 | 4860 | 3.701205 | AAGCCATAAAAGCCCCAAAAG | 57.299 | 42.857 | 0.00 | 0.00 | 0.00 | 2.27 |
4363 | 4861 | 2.901291 | AGCCATAAAAGCCCCAAAAGA | 58.099 | 42.857 | 0.00 | 0.00 | 0.00 | 2.52 |
4364 | 4862 | 3.247162 | AGCCATAAAAGCCCCAAAAGAA | 58.753 | 40.909 | 0.00 | 0.00 | 0.00 | 2.52 |
4365 | 4863 | 3.845992 | AGCCATAAAAGCCCCAAAAGAAT | 59.154 | 39.130 | 0.00 | 0.00 | 0.00 | 2.40 |
4366 | 4864 | 4.080919 | AGCCATAAAAGCCCCAAAAGAATC | 60.081 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
4367 | 4865 | 4.080919 | GCCATAAAAGCCCCAAAAGAATCT | 60.081 | 41.667 | 0.00 | 0.00 | 0.00 | 2.40 |
4368 | 4866 | 5.128663 | GCCATAAAAGCCCCAAAAGAATCTA | 59.871 | 40.000 | 0.00 | 0.00 | 0.00 | 1.98 |
4369 | 4867 | 6.183361 | GCCATAAAAGCCCCAAAAGAATCTAT | 60.183 | 38.462 | 0.00 | 0.00 | 0.00 | 1.98 |
4370 | 4868 | 7.635750 | GCCATAAAAGCCCCAAAAGAATCTATT | 60.636 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
4371 | 4869 | 8.267183 | CCATAAAAGCCCCAAAAGAATCTATTT | 58.733 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
4374 | 4872 | 7.423844 | AAAGCCCCAAAAGAATCTATTTAGG | 57.576 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
4375 | 4873 | 6.341408 | AGCCCCAAAAGAATCTATTTAGGA | 57.659 | 37.500 | 4.83 | 0.00 | 0.00 | 2.94 |
4376 | 4874 | 6.368805 | AGCCCCAAAAGAATCTATTTAGGAG | 58.631 | 40.000 | 4.83 | 0.00 | 0.00 | 3.69 |
4377 | 4875 | 5.010112 | GCCCCAAAAGAATCTATTTAGGAGC | 59.990 | 44.000 | 4.83 | 0.00 | 0.00 | 4.70 |
4378 | 4876 | 6.368805 | CCCCAAAAGAATCTATTTAGGAGCT | 58.631 | 40.000 | 0.00 | 0.00 | 0.00 | 4.09 |
4379 | 4877 | 6.836007 | CCCCAAAAGAATCTATTTAGGAGCTT | 59.164 | 38.462 | 0.00 | 0.00 | 0.00 | 3.74 |
4380 | 4878 | 7.343057 | CCCCAAAAGAATCTATTTAGGAGCTTT | 59.657 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
4381 | 4879 | 8.753133 | CCCAAAAGAATCTATTTAGGAGCTTTT | 58.247 | 33.333 | 0.00 | 0.00 | 34.60 | 2.27 |
4394 | 4892 | 7.833285 | TTAGGAGCTTTTATGTCTTTTTGGT | 57.167 | 32.000 | 0.00 | 0.00 | 0.00 | 3.67 |
4395 | 4893 | 6.332735 | AGGAGCTTTTATGTCTTTTTGGTC | 57.667 | 37.500 | 0.00 | 0.00 | 0.00 | 4.02 |
4396 | 4894 | 5.833131 | AGGAGCTTTTATGTCTTTTTGGTCA | 59.167 | 36.000 | 0.00 | 0.00 | 0.00 | 4.02 |
4397 | 4895 | 6.323739 | AGGAGCTTTTATGTCTTTTTGGTCAA | 59.676 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
4398 | 4896 | 6.983890 | GGAGCTTTTATGTCTTTTTGGTCAAA | 59.016 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
4399 | 4897 | 7.494298 | GGAGCTTTTATGTCTTTTTGGTCAAAA | 59.506 | 33.333 | 4.92 | 4.92 | 38.40 | 2.44 |
4400 | 4898 | 8.962884 | AGCTTTTATGTCTTTTTGGTCAAAAT | 57.037 | 26.923 | 9.32 | 0.00 | 39.69 | 1.82 |
4401 | 4899 | 8.829612 | AGCTTTTATGTCTTTTTGGTCAAAATG | 58.170 | 29.630 | 9.32 | 11.29 | 39.69 | 2.32 |
4402 | 4900 | 8.825745 | GCTTTTATGTCTTTTTGGTCAAAATGA | 58.174 | 29.630 | 15.92 | 15.92 | 39.69 | 2.57 |
4407 | 4905 | 7.608308 | TGTCTTTTTGGTCAAAATGAAAAGG | 57.392 | 32.000 | 19.36 | 0.00 | 42.29 | 3.11 |
4408 | 4906 | 6.093357 | TGTCTTTTTGGTCAAAATGAAAAGGC | 59.907 | 34.615 | 19.36 | 11.82 | 42.29 | 4.35 |
4409 | 4907 | 5.588246 | TCTTTTTGGTCAAAATGAAAAGGCC | 59.412 | 36.000 | 16.93 | 0.00 | 39.73 | 5.19 |
4410 | 4908 | 2.810439 | TGGTCAAAATGAAAAGGCCG | 57.190 | 45.000 | 0.00 | 0.00 | 0.00 | 6.13 |
4411 | 4909 | 1.270041 | TGGTCAAAATGAAAAGGCCGC | 60.270 | 47.619 | 0.00 | 0.00 | 0.00 | 6.53 |
4412 | 4910 | 1.270041 | GGTCAAAATGAAAAGGCCGCA | 60.270 | 47.619 | 0.00 | 0.00 | 0.00 | 5.69 |
4413 | 4911 | 2.478831 | GTCAAAATGAAAAGGCCGCAA | 58.521 | 42.857 | 0.00 | 0.00 | 0.00 | 4.85 |
4414 | 4912 | 2.869192 | GTCAAAATGAAAAGGCCGCAAA | 59.131 | 40.909 | 0.00 | 0.00 | 0.00 | 3.68 |
4415 | 4913 | 3.311048 | GTCAAAATGAAAAGGCCGCAAAA | 59.689 | 39.130 | 0.00 | 0.00 | 0.00 | 2.44 |
4416 | 4914 | 3.559242 | TCAAAATGAAAAGGCCGCAAAAG | 59.441 | 39.130 | 0.00 | 0.00 | 0.00 | 2.27 |
4417 | 4915 | 1.511850 | AATGAAAAGGCCGCAAAAGC | 58.488 | 45.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4418 | 4916 | 0.392336 | ATGAAAAGGCCGCAAAAGCA | 59.608 | 45.000 | 0.00 | 0.00 | 0.00 | 3.91 |
4419 | 4917 | 0.176680 | TGAAAAGGCCGCAAAAGCAA | 59.823 | 45.000 | 0.00 | 0.00 | 0.00 | 3.91 |
4420 | 4918 | 1.294857 | GAAAAGGCCGCAAAAGCAAA | 58.705 | 45.000 | 0.00 | 0.00 | 0.00 | 3.68 |
4421 | 4919 | 1.668237 | GAAAAGGCCGCAAAAGCAAAA | 59.332 | 42.857 | 0.00 | 0.00 | 0.00 | 2.44 |
4422 | 4920 | 1.298602 | AAAGGCCGCAAAAGCAAAAG | 58.701 | 45.000 | 0.00 | 0.00 | 0.00 | 2.27 |
4423 | 4921 | 1.159713 | AAGGCCGCAAAAGCAAAAGC | 61.160 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4424 | 4922 | 1.886777 | GGCCGCAAAAGCAAAAGCA | 60.887 | 52.632 | 0.00 | 0.00 | 0.00 | 3.91 |
4425 | 4923 | 1.566077 | GCCGCAAAAGCAAAAGCAG | 59.434 | 52.632 | 0.00 | 0.00 | 0.00 | 4.24 |
4426 | 4924 | 0.875474 | GCCGCAAAAGCAAAAGCAGA | 60.875 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
4427 | 4925 | 1.569708 | CCGCAAAAGCAAAAGCAGAA | 58.430 | 45.000 | 0.00 | 0.00 | 0.00 | 3.02 |
4428 | 4926 | 1.523934 | CCGCAAAAGCAAAAGCAGAAG | 59.476 | 47.619 | 0.00 | 0.00 | 0.00 | 2.85 |
4429 | 4927 | 1.071041 | CGCAAAAGCAAAAGCAGAAGC | 60.071 | 47.619 | 0.00 | 0.00 | 42.56 | 3.86 |
4430 | 4928 | 1.262417 | GCAAAAGCAAAAGCAGAAGCC | 59.738 | 47.619 | 0.00 | 0.00 | 43.56 | 4.35 |
4431 | 4929 | 1.869132 | CAAAAGCAAAAGCAGAAGCCC | 59.131 | 47.619 | 0.00 | 0.00 | 43.56 | 5.19 |
4432 | 4930 | 1.122227 | AAAGCAAAAGCAGAAGCCCA | 58.878 | 45.000 | 0.00 | 0.00 | 43.56 | 5.36 |
4433 | 4931 | 1.122227 | AAGCAAAAGCAGAAGCCCAA | 58.878 | 45.000 | 0.00 | 0.00 | 43.56 | 4.12 |
4434 | 4932 | 1.122227 | AGCAAAAGCAGAAGCCCAAA | 58.878 | 45.000 | 0.00 | 0.00 | 43.56 | 3.28 |
4435 | 4933 | 1.202568 | AGCAAAAGCAGAAGCCCAAAC | 60.203 | 47.619 | 0.00 | 0.00 | 43.56 | 2.93 |
4436 | 4934 | 1.473080 | GCAAAAGCAGAAGCCCAAACA | 60.473 | 47.619 | 0.00 | 0.00 | 43.56 | 2.83 |
4437 | 4935 | 2.903798 | CAAAAGCAGAAGCCCAAACAA | 58.096 | 42.857 | 0.00 | 0.00 | 43.56 | 2.83 |
4438 | 4936 | 3.269178 | CAAAAGCAGAAGCCCAAACAAA | 58.731 | 40.909 | 0.00 | 0.00 | 43.56 | 2.83 |
4439 | 4937 | 2.602257 | AAGCAGAAGCCCAAACAAAC | 57.398 | 45.000 | 0.00 | 0.00 | 43.56 | 2.93 |
4440 | 4938 | 1.484038 | AGCAGAAGCCCAAACAAACA | 58.516 | 45.000 | 0.00 | 0.00 | 43.56 | 2.83 |
4441 | 4939 | 1.410153 | AGCAGAAGCCCAAACAAACAG | 59.590 | 47.619 | 0.00 | 0.00 | 43.56 | 3.16 |
4442 | 4940 | 1.538849 | GCAGAAGCCCAAACAAACAGG | 60.539 | 52.381 | 0.00 | 0.00 | 33.58 | 4.00 |
4443 | 4941 | 1.069049 | CAGAAGCCCAAACAAACAGGG | 59.931 | 52.381 | 0.00 | 0.00 | 45.68 | 4.45 |
4446 | 4944 | 4.293610 | CCCAAACAAACAGGGCCT | 57.706 | 55.556 | 0.00 | 0.00 | 35.44 | 5.19 |
4453 | 4951 | 3.306472 | AACAAACAGGGCCTTACAGAA | 57.694 | 42.857 | 1.32 | 0.00 | 0.00 | 3.02 |
4454 | 4952 | 3.306472 | ACAAACAGGGCCTTACAGAAA | 57.694 | 42.857 | 1.32 | 0.00 | 0.00 | 2.52 |
4458 | 4956 | 2.339769 | ACAGGGCCTTACAGAAAGAGT | 58.660 | 47.619 | 1.32 | 0.00 | 37.38 | 3.24 |
4460 | 4958 | 3.261137 | ACAGGGCCTTACAGAAAGAGTAC | 59.739 | 47.826 | 1.32 | 0.00 | 37.38 | 2.73 |
4480 | 4978 | 3.167485 | ACATGATTGTGGTGGCATTCTT | 58.833 | 40.909 | 0.00 | 0.00 | 33.85 | 2.52 |
4508 | 5006 | 4.015872 | TCAGGAATGAAGTAACCACACC | 57.984 | 45.455 | 0.00 | 0.00 | 0.00 | 4.16 |
4509 | 5007 | 3.392947 | TCAGGAATGAAGTAACCACACCA | 59.607 | 43.478 | 0.00 | 0.00 | 0.00 | 4.17 |
4544 | 5045 | 5.710513 | TGCTATCAAACAAAATGTCAGCT | 57.289 | 34.783 | 0.00 | 0.00 | 31.52 | 4.24 |
4545 | 5046 | 6.088016 | TGCTATCAAACAAAATGTCAGCTT | 57.912 | 33.333 | 0.00 | 0.00 | 31.52 | 3.74 |
4547 | 5048 | 5.346822 | GCTATCAAACAAAATGTCAGCTTGG | 59.653 | 40.000 | 0.00 | 0.00 | 0.00 | 3.61 |
4548 | 5049 | 3.456280 | TCAAACAAAATGTCAGCTTGGC | 58.544 | 40.909 | 0.00 | 0.00 | 0.00 | 4.52 |
4565 | 5084 | 3.736483 | CATGGATGCTACCACGCC | 58.264 | 61.111 | 4.71 | 0.00 | 43.03 | 5.68 |
4583 | 5108 | 2.555325 | CGCCAATAGGTATGTACTCGGA | 59.445 | 50.000 | 0.00 | 0.00 | 37.19 | 4.55 |
4595 | 5120 | 4.217836 | TGTACTCGGACATGTCTAGAGT | 57.782 | 45.455 | 35.72 | 35.72 | 43.71 | 3.24 |
4600 | 5125 | 1.745653 | CGGACATGTCTAGAGTCAGCA | 59.254 | 52.381 | 24.50 | 0.00 | 34.04 | 4.41 |
4631 | 5156 | 0.402121 | AGAACAAGGGTGAGAAGGCC | 59.598 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
4641 | 5166 | 0.817634 | TGAGAAGGCCACCAAACACG | 60.818 | 55.000 | 5.01 | 0.00 | 0.00 | 4.49 |
4669 | 5194 | 2.089980 | GTTCACTAGGCGTGGAGTCTA | 58.910 | 52.381 | 0.00 | 0.00 | 43.94 | 2.59 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 1.068748 | CATTTGAGCACTGCAGGACAC | 60.069 | 52.381 | 19.93 | 8.62 | 0.00 | 3.67 |
27 | 28 | 2.669364 | CATGACCTTCAACAAGCTTGC | 58.331 | 47.619 | 26.27 | 7.87 | 0.00 | 4.01 |
64 | 65 | 4.015406 | TGGCGCCCATTGACGTCT | 62.015 | 61.111 | 26.77 | 0.00 | 34.36 | 4.18 |
67 | 68 | 2.125310 | TAGTGGCGCCCATTGACG | 60.125 | 61.111 | 26.77 | 0.00 | 35.28 | 4.35 |
157 | 158 | 1.840635 | GGAGTTATTGCCTCCTGGACT | 59.159 | 52.381 | 0.00 | 0.00 | 44.29 | 3.85 |
171 | 173 | 6.295123 | CCTGACACTTAGCAAAGTAGGAGTTA | 60.295 | 42.308 | 1.04 | 0.00 | 44.28 | 2.24 |
214 | 216 | 2.436646 | ACCAAATGCCCGCTCGAG | 60.437 | 61.111 | 8.45 | 8.45 | 0.00 | 4.04 |
273 | 275 | 5.118990 | CACATCTGATATTTCGACCAGGTT | 58.881 | 41.667 | 0.00 | 0.00 | 0.00 | 3.50 |
353 | 356 | 1.279840 | GTGTCAAACACTGGCTCGC | 59.720 | 57.895 | 3.03 | 0.00 | 45.27 | 5.03 |
441 | 444 | 4.695928 | CGGATCTCCTGACGTATATTGAGA | 59.304 | 45.833 | 0.00 | 0.00 | 33.78 | 3.27 |
470 | 473 | 6.018262 | GTGTTGTAGTTCTTGATGCACTTGTA | 60.018 | 38.462 | 0.00 | 0.00 | 0.00 | 2.41 |
489 | 492 | 0.320771 | GCTCCACCAGATCGTGTTGT | 60.321 | 55.000 | 0.89 | 0.00 | 31.47 | 3.32 |
534 | 537 | 9.959749 | AACACGAATTAAAACACATCAAACTAT | 57.040 | 25.926 | 0.00 | 0.00 | 0.00 | 2.12 |
555 | 559 | 3.539563 | CGCAAGCTCATAATTCAAACACG | 59.460 | 43.478 | 0.00 | 0.00 | 0.00 | 4.49 |
637 | 643 | 6.454795 | ACACTTCGGCACAAATTCAATAAAT | 58.545 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
708 | 720 | 2.672996 | CAGCCGTCCCCCAAGTTG | 60.673 | 66.667 | 0.00 | 0.00 | 0.00 | 3.16 |
740 | 762 | 2.927477 | TGTCGGCACTATTTTCGATGTC | 59.073 | 45.455 | 0.00 | 0.00 | 34.13 | 3.06 |
741 | 763 | 2.967362 | TGTCGGCACTATTTTCGATGT | 58.033 | 42.857 | 0.00 | 0.00 | 34.13 | 3.06 |
743 | 765 | 2.351726 | GCTTGTCGGCACTATTTTCGAT | 59.648 | 45.455 | 0.00 | 0.00 | 34.13 | 3.59 |
766 | 798 | 1.084289 | GGAAAATAGCGCGTCTTGGT | 58.916 | 50.000 | 8.43 | 0.00 | 0.00 | 3.67 |
773 | 805 | 0.653636 | TTTAGGCGGAAAATAGCGCG | 59.346 | 50.000 | 0.00 | 0.00 | 0.00 | 6.86 |
832 | 866 | 9.535170 | CAGGAAATAGATAGTTAGGTCATCCTA | 57.465 | 37.037 | 0.00 | 0.00 | 44.58 | 2.94 |
857 | 891 | 5.833406 | ACGGAACAAAATGATCATATGCA | 57.167 | 34.783 | 9.04 | 0.00 | 0.00 | 3.96 |
868 | 904 | 5.692204 | CGCTCTAGATCATACGGAACAAAAT | 59.308 | 40.000 | 0.00 | 0.00 | 0.00 | 1.82 |
873 | 909 | 3.900388 | ACGCTCTAGATCATACGGAAC | 57.100 | 47.619 | 0.00 | 0.00 | 0.00 | 3.62 |
960 | 997 | 4.870158 | GTCGAGACTTGTGTCGAGAGCC | 62.870 | 59.091 | 20.41 | 7.79 | 45.41 | 4.70 |
1439 | 1699 | 1.079127 | AACCCGATCCGCTGACAAG | 60.079 | 57.895 | 0.00 | 0.00 | 0.00 | 3.16 |
1440 | 1700 | 1.375396 | CAACCCGATCCGCTGACAA | 60.375 | 57.895 | 0.00 | 0.00 | 0.00 | 3.18 |
1441 | 1701 | 1.252215 | TACAACCCGATCCGCTGACA | 61.252 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
1442 | 1702 | 0.104304 | ATACAACCCGATCCGCTGAC | 59.896 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1443 | 1703 | 0.828022 | AATACAACCCGATCCGCTGA | 59.172 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1444 | 1704 | 1.663695 | AAATACAACCCGATCCGCTG | 58.336 | 50.000 | 0.00 | 0.00 | 0.00 | 5.18 |
1445 | 1705 | 2.093128 | AGAAAATACAACCCGATCCGCT | 60.093 | 45.455 | 0.00 | 0.00 | 0.00 | 5.52 |
1516 | 1776 | 1.021968 | GAAGCGACCCAAACACAACT | 58.978 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1569 | 1829 | 1.366319 | AGACTTTGCTCCTGGGTCAT | 58.634 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1596 | 1856 | 2.682594 | TGCATCCTAGTGCTACTGGAT | 58.317 | 47.619 | 6.85 | 11.05 | 45.27 | 3.41 |
1925 | 2287 | 6.699642 | GTGCCTGTGTTTTGCTAATTTTAGAA | 59.300 | 34.615 | 1.52 | 0.00 | 32.47 | 2.10 |
1926 | 2288 | 6.040391 | AGTGCCTGTGTTTTGCTAATTTTAGA | 59.960 | 34.615 | 1.52 | 0.00 | 32.47 | 2.10 |
1946 | 2308 | 4.271696 | AGGATGGCTTTTAAAAAGTGCC | 57.728 | 40.909 | 18.24 | 18.24 | 38.75 | 5.01 |
2054 | 2417 | 2.858344 | GCAAGCATAGCAAGCAATTCAG | 59.142 | 45.455 | 0.00 | 0.00 | 32.47 | 3.02 |
2200 | 2563 | 4.162320 | GTCCACCATTCCTCTCACAGATTA | 59.838 | 45.833 | 0.00 | 0.00 | 0.00 | 1.75 |
2322 | 2690 | 2.278245 | ACATTCATGGGGAAGGTCTGA | 58.722 | 47.619 | 0.00 | 0.00 | 46.84 | 3.27 |
2520 | 2898 | 7.063426 | GCAATAGCATTTCCCTTGTTTAAGTTC | 59.937 | 37.037 | 0.00 | 0.00 | 41.58 | 3.01 |
2598 | 2976 | 6.227298 | AGACAAACTTGAAGAGAGAACTCA | 57.773 | 37.500 | 0.00 | 0.00 | 44.79 | 3.41 |
2689 | 3068 | 5.181811 | CACACTGAGATGGTTAGCAATCAAA | 59.818 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2690 | 3069 | 4.696877 | CACACTGAGATGGTTAGCAATCAA | 59.303 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
2740 | 3120 | 4.681483 | GGCATGTTTTAGCAACAAGACTTC | 59.319 | 41.667 | 0.00 | 0.00 | 33.42 | 3.01 |
2898 | 3367 | 1.709147 | CCTGCACGCAAGGTAGATGC | 61.709 | 60.000 | 0.00 | 0.00 | 46.39 | 3.91 |
3288 | 3773 | 1.798283 | TGCTGCAAAATCAACATGGC | 58.202 | 45.000 | 0.00 | 0.00 | 0.00 | 4.40 |
3405 | 3890 | 4.986645 | TGCGCCAGCTTCGAGCAA | 62.987 | 61.111 | 4.18 | 0.00 | 45.56 | 3.91 |
3425 | 3910 | 3.069729 | CGTAGGTATTCTCCTTCTTGGGG | 59.930 | 52.174 | 0.00 | 0.00 | 38.86 | 4.96 |
3491 | 3976 | 1.602323 | CTTGGCGGTTAACAGGGCA | 60.602 | 57.895 | 17.42 | 17.42 | 34.16 | 5.36 |
3534 | 4019 | 0.898320 | CAGGTCCATCCTCAGTTCGT | 59.102 | 55.000 | 0.00 | 0.00 | 46.24 | 3.85 |
3543 | 4028 | 0.976073 | TTCCTCCGACAGGTCCATCC | 60.976 | 60.000 | 0.00 | 0.00 | 43.95 | 3.51 |
3705 | 4194 | 2.564062 | AGGGCAAATGGAGAAACACATG | 59.436 | 45.455 | 0.00 | 0.00 | 0.00 | 3.21 |
3706 | 4195 | 2.893424 | AGGGCAAATGGAGAAACACAT | 58.107 | 42.857 | 0.00 | 0.00 | 0.00 | 3.21 |
3707 | 4196 | 2.380064 | AGGGCAAATGGAGAAACACA | 57.620 | 45.000 | 0.00 | 0.00 | 0.00 | 3.72 |
3828 | 4325 | 4.582656 | TGTCATGGACGAAACATTTCCTTT | 59.417 | 37.500 | 0.00 | 0.00 | 34.95 | 3.11 |
3837 | 4334 | 2.480419 | CTCAGGTTGTCATGGACGAAAC | 59.520 | 50.000 | 0.00 | 0.00 | 34.95 | 2.78 |
3878 | 4375 | 3.959975 | CCACCAAACACGCCACGG | 61.960 | 66.667 | 0.00 | 0.00 | 0.00 | 4.94 |
3881 | 4378 | 1.525077 | GACTCCACCAAACACGCCA | 60.525 | 57.895 | 0.00 | 0.00 | 0.00 | 5.69 |
3990 | 4487 | 9.597681 | TCTTATATTTCTTTACGGAGGGAGTAT | 57.402 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
3992 | 4489 | 7.564292 | AGTCTTATATTTCTTTACGGAGGGAGT | 59.436 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
3993 | 4490 | 7.953752 | AGTCTTATATTTCTTTACGGAGGGAG | 58.046 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
3995 | 4492 | 7.153315 | GGAGTCTTATATTTCTTTACGGAGGG | 58.847 | 42.308 | 0.00 | 0.00 | 0.00 | 4.30 |
3996 | 4493 | 7.015389 | AGGGAGTCTTATATTTCTTTACGGAGG | 59.985 | 40.741 | 0.00 | 0.00 | 0.00 | 4.30 |
3997 | 4494 | 7.953752 | AGGGAGTCTTATATTTCTTTACGGAG | 58.046 | 38.462 | 0.00 | 0.00 | 0.00 | 4.63 |
3999 | 4496 | 7.381678 | CGAAGGGAGTCTTATATTTCTTTACGG | 59.618 | 40.741 | 0.00 | 0.00 | 35.50 | 4.02 |
4000 | 4497 | 7.919621 | ACGAAGGGAGTCTTATATTTCTTTACG | 59.080 | 37.037 | 0.00 | 0.00 | 35.50 | 3.18 |
4001 | 4498 | 9.247126 | GACGAAGGGAGTCTTATATTTCTTTAC | 57.753 | 37.037 | 0.00 | 0.00 | 35.50 | 2.01 |
4002 | 4499 | 9.198475 | AGACGAAGGGAGTCTTATATTTCTTTA | 57.802 | 33.333 | 0.00 | 0.00 | 45.74 | 1.85 |
4003 | 4500 | 8.080363 | AGACGAAGGGAGTCTTATATTTCTTT | 57.920 | 34.615 | 0.00 | 0.00 | 45.74 | 2.52 |
4015 | 4512 | 8.338072 | TCTTATATTATGAGACGAAGGGAGTC | 57.662 | 38.462 | 0.00 | 0.00 | 38.81 | 3.36 |
4016 | 4513 | 8.707796 | TTCTTATATTATGAGACGAAGGGAGT | 57.292 | 34.615 | 0.00 | 0.00 | 0.00 | 3.85 |
4067 | 4564 | 7.040548 | TCCGTCCCAAAATATAAGAACGTTTTT | 60.041 | 33.333 | 9.22 | 9.22 | 0.00 | 1.94 |
4068 | 4565 | 6.430616 | TCCGTCCCAAAATATAAGAACGTTTT | 59.569 | 34.615 | 0.46 | 0.00 | 0.00 | 2.43 |
4069 | 4566 | 5.939296 | TCCGTCCCAAAATATAAGAACGTTT | 59.061 | 36.000 | 0.46 | 0.00 | 0.00 | 3.60 |
4070 | 4567 | 5.490159 | TCCGTCCCAAAATATAAGAACGTT | 58.510 | 37.500 | 0.00 | 0.00 | 0.00 | 3.99 |
4071 | 4568 | 5.088680 | TCCGTCCCAAAATATAAGAACGT | 57.911 | 39.130 | 0.00 | 0.00 | 0.00 | 3.99 |
4072 | 4569 | 4.510340 | CCTCCGTCCCAAAATATAAGAACG | 59.490 | 45.833 | 0.00 | 0.00 | 0.00 | 3.95 |
4073 | 4570 | 4.820173 | CCCTCCGTCCCAAAATATAAGAAC | 59.180 | 45.833 | 0.00 | 0.00 | 0.00 | 3.01 |
4074 | 4571 | 4.722781 | TCCCTCCGTCCCAAAATATAAGAA | 59.277 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
4077 | 4574 | 4.042174 | ACTCCCTCCGTCCCAAAATATAA | 58.958 | 43.478 | 0.00 | 0.00 | 0.00 | 0.98 |
4079 | 4576 | 2.488836 | ACTCCCTCCGTCCCAAAATAT | 58.511 | 47.619 | 0.00 | 0.00 | 0.00 | 1.28 |
4080 | 4577 | 1.961133 | ACTCCCTCCGTCCCAAAATA | 58.039 | 50.000 | 0.00 | 0.00 | 0.00 | 1.40 |
4083 | 4580 | 0.410663 | TCTACTCCCTCCGTCCCAAA | 59.589 | 55.000 | 0.00 | 0.00 | 0.00 | 3.28 |
4085 | 4582 | 0.106167 | CATCTACTCCCTCCGTCCCA | 60.106 | 60.000 | 0.00 | 0.00 | 0.00 | 4.37 |
4086 | 4583 | 0.106116 | ACATCTACTCCCTCCGTCCC | 60.106 | 60.000 | 0.00 | 0.00 | 0.00 | 4.46 |
4088 | 4585 | 1.950909 | CTGACATCTACTCCCTCCGTC | 59.049 | 57.143 | 0.00 | 0.00 | 0.00 | 4.79 |
4090 | 4587 | 2.158740 | TCTCTGACATCTACTCCCTCCG | 60.159 | 54.545 | 0.00 | 0.00 | 0.00 | 4.63 |
4091 | 4588 | 3.486383 | CTCTCTGACATCTACTCCCTCC | 58.514 | 54.545 | 0.00 | 0.00 | 0.00 | 4.30 |
4092 | 4589 | 3.137544 | TCCTCTCTGACATCTACTCCCTC | 59.862 | 52.174 | 0.00 | 0.00 | 0.00 | 4.30 |
4093 | 4590 | 3.117663 | GTCCTCTCTGACATCTACTCCCT | 60.118 | 52.174 | 0.00 | 0.00 | 35.29 | 4.20 |
4094 | 4591 | 3.219281 | GTCCTCTCTGACATCTACTCCC | 58.781 | 54.545 | 0.00 | 0.00 | 35.29 | 4.30 |
4095 | 4592 | 3.892284 | TGTCCTCTCTGACATCTACTCC | 58.108 | 50.000 | 0.00 | 0.00 | 40.22 | 3.85 |
4104 | 4601 | 4.502962 | CTCTTTCCAATGTCCTCTCTGAC | 58.497 | 47.826 | 0.00 | 0.00 | 35.77 | 3.51 |
4105 | 4602 | 3.055530 | GCTCTTTCCAATGTCCTCTCTGA | 60.056 | 47.826 | 0.00 | 0.00 | 0.00 | 3.27 |
4106 | 4603 | 3.269178 | GCTCTTTCCAATGTCCTCTCTG | 58.731 | 50.000 | 0.00 | 0.00 | 0.00 | 3.35 |
4107 | 4604 | 2.909006 | TGCTCTTTCCAATGTCCTCTCT | 59.091 | 45.455 | 0.00 | 0.00 | 0.00 | 3.10 |
4108 | 4605 | 3.269178 | CTGCTCTTTCCAATGTCCTCTC | 58.731 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
4109 | 4606 | 2.641815 | ACTGCTCTTTCCAATGTCCTCT | 59.358 | 45.455 | 0.00 | 0.00 | 0.00 | 3.69 |
4110 | 4607 | 3.064900 | ACTGCTCTTTCCAATGTCCTC | 57.935 | 47.619 | 0.00 | 0.00 | 0.00 | 3.71 |
4111 | 4608 | 4.640771 | TTACTGCTCTTTCCAATGTCCT | 57.359 | 40.909 | 0.00 | 0.00 | 0.00 | 3.85 |
4112 | 4609 | 4.702131 | ACATTACTGCTCTTTCCAATGTCC | 59.298 | 41.667 | 0.00 | 0.00 | 32.65 | 4.02 |
4113 | 4610 | 5.886960 | ACATTACTGCTCTTTCCAATGTC | 57.113 | 39.130 | 0.00 | 0.00 | 32.65 | 3.06 |
4137 | 4635 | 5.691754 | CCAAGTATCAAAGAACAAGGCAAAC | 59.308 | 40.000 | 0.00 | 0.00 | 0.00 | 2.93 |
4140 | 4638 | 4.469657 | ACCAAGTATCAAAGAACAAGGCA | 58.530 | 39.130 | 0.00 | 0.00 | 0.00 | 4.75 |
4318 | 4816 | 5.296151 | TGATGAGGGCCTAAGACATTTAG | 57.704 | 43.478 | 5.73 | 0.00 | 0.00 | 1.85 |
4319 | 4817 | 5.708736 | TTGATGAGGGCCTAAGACATTTA | 57.291 | 39.130 | 5.73 | 0.00 | 0.00 | 1.40 |
4323 | 4821 | 3.873801 | GCTTTTGATGAGGGCCTAAGACA | 60.874 | 47.826 | 5.73 | 0.00 | 0.00 | 3.41 |
4324 | 4822 | 2.685388 | GCTTTTGATGAGGGCCTAAGAC | 59.315 | 50.000 | 5.73 | 0.00 | 0.00 | 3.01 |
4325 | 4823 | 2.357154 | GGCTTTTGATGAGGGCCTAAGA | 60.357 | 50.000 | 5.73 | 0.00 | 39.68 | 2.10 |
4326 | 4824 | 2.027385 | GGCTTTTGATGAGGGCCTAAG | 58.973 | 52.381 | 5.73 | 6.57 | 39.68 | 2.18 |
4327 | 4825 | 1.357420 | TGGCTTTTGATGAGGGCCTAA | 59.643 | 47.619 | 5.73 | 0.00 | 42.84 | 2.69 |
4329 | 4827 | 0.337428 | ATGGCTTTTGATGAGGGCCT | 59.663 | 50.000 | 5.25 | 5.25 | 42.84 | 5.19 |
4330 | 4828 | 2.071778 | TATGGCTTTTGATGAGGGCC | 57.928 | 50.000 | 0.00 | 0.00 | 42.73 | 5.80 |
4331 | 4829 | 4.436332 | CTTTTATGGCTTTTGATGAGGGC | 58.564 | 43.478 | 0.00 | 0.00 | 0.00 | 5.19 |
4332 | 4830 | 4.436332 | GCTTTTATGGCTTTTGATGAGGG | 58.564 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
4333 | 4831 | 4.436332 | GGCTTTTATGGCTTTTGATGAGG | 58.564 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
4334 | 4832 | 4.436332 | GGGCTTTTATGGCTTTTGATGAG | 58.564 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
4335 | 4833 | 3.197549 | GGGGCTTTTATGGCTTTTGATGA | 59.802 | 43.478 | 0.00 | 0.00 | 0.00 | 2.92 |
4336 | 4834 | 3.055240 | TGGGGCTTTTATGGCTTTTGATG | 60.055 | 43.478 | 0.00 | 0.00 | 0.00 | 3.07 |
4337 | 4835 | 3.180507 | TGGGGCTTTTATGGCTTTTGAT | 58.819 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
4338 | 4836 | 2.614259 | TGGGGCTTTTATGGCTTTTGA | 58.386 | 42.857 | 0.00 | 0.00 | 0.00 | 2.69 |
4339 | 4837 | 3.415457 | TTGGGGCTTTTATGGCTTTTG | 57.585 | 42.857 | 0.00 | 0.00 | 0.00 | 2.44 |
4340 | 4838 | 4.103943 | TCTTTTGGGGCTTTTATGGCTTTT | 59.896 | 37.500 | 0.00 | 0.00 | 0.00 | 2.27 |
4341 | 4839 | 3.650461 | TCTTTTGGGGCTTTTATGGCTTT | 59.350 | 39.130 | 0.00 | 0.00 | 0.00 | 3.51 |
4342 | 4840 | 3.247162 | TCTTTTGGGGCTTTTATGGCTT | 58.753 | 40.909 | 0.00 | 0.00 | 0.00 | 4.35 |
4343 | 4841 | 2.901291 | TCTTTTGGGGCTTTTATGGCT | 58.099 | 42.857 | 0.00 | 0.00 | 0.00 | 4.75 |
4344 | 4842 | 3.694043 | TTCTTTTGGGGCTTTTATGGC | 57.306 | 42.857 | 0.00 | 0.00 | 0.00 | 4.40 |
4345 | 4843 | 5.682234 | AGATTCTTTTGGGGCTTTTATGG | 57.318 | 39.130 | 0.00 | 0.00 | 0.00 | 2.74 |
4348 | 4846 | 8.977412 | CCTAAATAGATTCTTTTGGGGCTTTTA | 58.023 | 33.333 | 12.05 | 0.00 | 31.78 | 1.52 |
4349 | 4847 | 7.678171 | TCCTAAATAGATTCTTTTGGGGCTTTT | 59.322 | 33.333 | 16.27 | 0.00 | 35.03 | 2.27 |
4350 | 4848 | 7.189087 | TCCTAAATAGATTCTTTTGGGGCTTT | 58.811 | 34.615 | 16.27 | 0.00 | 35.03 | 3.51 |
4351 | 4849 | 6.741724 | TCCTAAATAGATTCTTTTGGGGCTT | 58.258 | 36.000 | 16.27 | 0.00 | 35.03 | 4.35 |
4352 | 4850 | 6.341408 | TCCTAAATAGATTCTTTTGGGGCT | 57.659 | 37.500 | 16.27 | 0.00 | 35.03 | 5.19 |
4353 | 4851 | 5.010112 | GCTCCTAAATAGATTCTTTTGGGGC | 59.990 | 44.000 | 16.27 | 12.48 | 43.96 | 5.80 |
4354 | 4852 | 6.368805 | AGCTCCTAAATAGATTCTTTTGGGG | 58.631 | 40.000 | 16.27 | 8.18 | 35.03 | 4.96 |
4355 | 4853 | 7.888250 | AAGCTCCTAAATAGATTCTTTTGGG | 57.112 | 36.000 | 12.97 | 12.97 | 35.45 | 4.12 |
4368 | 4866 | 8.870116 | ACCAAAAAGACATAAAAGCTCCTAAAT | 58.130 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
4369 | 4867 | 8.245195 | ACCAAAAAGACATAAAAGCTCCTAAA | 57.755 | 30.769 | 0.00 | 0.00 | 0.00 | 1.85 |
4370 | 4868 | 7.504238 | TGACCAAAAAGACATAAAAGCTCCTAA | 59.496 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
4371 | 4869 | 7.001674 | TGACCAAAAAGACATAAAAGCTCCTA | 58.998 | 34.615 | 0.00 | 0.00 | 0.00 | 2.94 |
4372 | 4870 | 5.833131 | TGACCAAAAAGACATAAAAGCTCCT | 59.167 | 36.000 | 0.00 | 0.00 | 0.00 | 3.69 |
4373 | 4871 | 6.084326 | TGACCAAAAAGACATAAAAGCTCC | 57.916 | 37.500 | 0.00 | 0.00 | 0.00 | 4.70 |
4374 | 4872 | 8.419076 | TTTTGACCAAAAAGACATAAAAGCTC | 57.581 | 30.769 | 5.53 | 0.00 | 37.35 | 4.09 |
4375 | 4873 | 8.829612 | CATTTTGACCAAAAAGACATAAAAGCT | 58.170 | 29.630 | 11.34 | 0.00 | 42.71 | 3.74 |
4376 | 4874 | 8.825745 | TCATTTTGACCAAAAAGACATAAAAGC | 58.174 | 29.630 | 11.34 | 0.00 | 42.71 | 3.51 |
4381 | 4879 | 9.323985 | CCTTTTCATTTTGACCAAAAAGACATA | 57.676 | 29.630 | 11.34 | 0.00 | 42.71 | 2.29 |
4382 | 4880 | 7.201723 | GCCTTTTCATTTTGACCAAAAAGACAT | 60.202 | 33.333 | 11.34 | 0.00 | 42.71 | 3.06 |
4383 | 4881 | 6.093357 | GCCTTTTCATTTTGACCAAAAAGACA | 59.907 | 34.615 | 11.34 | 4.13 | 42.71 | 3.41 |
4384 | 4882 | 6.458206 | GGCCTTTTCATTTTGACCAAAAAGAC | 60.458 | 38.462 | 11.34 | 2.12 | 42.71 | 3.01 |
4385 | 4883 | 5.588246 | GGCCTTTTCATTTTGACCAAAAAGA | 59.412 | 36.000 | 11.34 | 9.84 | 42.71 | 2.52 |
4386 | 4884 | 5.503846 | CGGCCTTTTCATTTTGACCAAAAAG | 60.504 | 40.000 | 11.34 | 7.83 | 42.71 | 2.27 |
4387 | 4885 | 4.333926 | CGGCCTTTTCATTTTGACCAAAAA | 59.666 | 37.500 | 11.34 | 0.00 | 42.71 | 1.94 |
4388 | 4886 | 3.873952 | CGGCCTTTTCATTTTGACCAAAA | 59.126 | 39.130 | 9.94 | 9.94 | 43.48 | 2.44 |
4389 | 4887 | 3.462021 | CGGCCTTTTCATTTTGACCAAA | 58.538 | 40.909 | 0.00 | 0.00 | 0.00 | 3.28 |
4390 | 4888 | 2.804933 | GCGGCCTTTTCATTTTGACCAA | 60.805 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
4391 | 4889 | 1.270041 | GCGGCCTTTTCATTTTGACCA | 60.270 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
4392 | 4890 | 1.270041 | TGCGGCCTTTTCATTTTGACC | 60.270 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
4393 | 4891 | 2.147436 | TGCGGCCTTTTCATTTTGAC | 57.853 | 45.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4394 | 4892 | 2.898729 | TTGCGGCCTTTTCATTTTGA | 57.101 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
4395 | 4893 | 3.849281 | GCTTTTGCGGCCTTTTCATTTTG | 60.849 | 43.478 | 0.00 | 0.00 | 34.86 | 2.44 |
4396 | 4894 | 2.290367 | GCTTTTGCGGCCTTTTCATTTT | 59.710 | 40.909 | 0.00 | 0.00 | 34.86 | 1.82 |
4397 | 4895 | 1.872952 | GCTTTTGCGGCCTTTTCATTT | 59.127 | 42.857 | 0.00 | 0.00 | 34.86 | 2.32 |
4398 | 4896 | 1.511850 | GCTTTTGCGGCCTTTTCATT | 58.488 | 45.000 | 0.00 | 0.00 | 34.86 | 2.57 |
4399 | 4897 | 3.215642 | GCTTTTGCGGCCTTTTCAT | 57.784 | 47.368 | 0.00 | 0.00 | 34.86 | 2.57 |
4400 | 4898 | 4.748409 | GCTTTTGCGGCCTTTTCA | 57.252 | 50.000 | 0.00 | 0.00 | 34.86 | 2.69 |
4417 | 4915 | 2.600470 | TGTTTGGGCTTCTGCTTTTG | 57.400 | 45.000 | 0.00 | 0.00 | 39.59 | 2.44 |
4418 | 4916 | 3.270027 | GTTTGTTTGGGCTTCTGCTTTT | 58.730 | 40.909 | 0.00 | 0.00 | 39.59 | 2.27 |
4419 | 4917 | 2.235898 | TGTTTGTTTGGGCTTCTGCTTT | 59.764 | 40.909 | 0.00 | 0.00 | 39.59 | 3.51 |
4420 | 4918 | 1.830477 | TGTTTGTTTGGGCTTCTGCTT | 59.170 | 42.857 | 0.00 | 0.00 | 39.59 | 3.91 |
4421 | 4919 | 1.410153 | CTGTTTGTTTGGGCTTCTGCT | 59.590 | 47.619 | 0.00 | 0.00 | 39.59 | 4.24 |
4422 | 4920 | 1.538849 | CCTGTTTGTTTGGGCTTCTGC | 60.539 | 52.381 | 0.00 | 0.00 | 38.76 | 4.26 |
4423 | 4921 | 1.069049 | CCCTGTTTGTTTGGGCTTCTG | 59.931 | 52.381 | 0.00 | 0.00 | 33.88 | 3.02 |
4424 | 4922 | 1.413118 | CCCTGTTTGTTTGGGCTTCT | 58.587 | 50.000 | 0.00 | 0.00 | 33.88 | 2.85 |
4425 | 4923 | 3.986970 | CCCTGTTTGTTTGGGCTTC | 57.013 | 52.632 | 0.00 | 0.00 | 33.88 | 3.86 |
4429 | 4927 | 1.343142 | GTAAGGCCCTGTTTGTTTGGG | 59.657 | 52.381 | 0.00 | 0.00 | 43.62 | 4.12 |
4430 | 4928 | 2.035632 | TGTAAGGCCCTGTTTGTTTGG | 58.964 | 47.619 | 0.00 | 0.00 | 0.00 | 3.28 |
4431 | 4929 | 2.955660 | TCTGTAAGGCCCTGTTTGTTTG | 59.044 | 45.455 | 0.00 | 0.00 | 0.00 | 2.93 |
4432 | 4930 | 3.306472 | TCTGTAAGGCCCTGTTTGTTT | 57.694 | 42.857 | 0.00 | 0.00 | 0.00 | 2.83 |
4433 | 4931 | 3.306472 | TTCTGTAAGGCCCTGTTTGTT | 57.694 | 42.857 | 0.00 | 0.00 | 0.00 | 2.83 |
4434 | 4932 | 3.117663 | TCTTTCTGTAAGGCCCTGTTTGT | 60.118 | 43.478 | 0.00 | 0.00 | 34.46 | 2.83 |
4435 | 4933 | 3.486383 | TCTTTCTGTAAGGCCCTGTTTG | 58.514 | 45.455 | 0.00 | 0.00 | 34.46 | 2.93 |
4436 | 4934 | 3.138468 | ACTCTTTCTGTAAGGCCCTGTTT | 59.862 | 43.478 | 0.00 | 0.00 | 34.46 | 2.83 |
4437 | 4935 | 2.711547 | ACTCTTTCTGTAAGGCCCTGTT | 59.288 | 45.455 | 0.00 | 0.00 | 34.46 | 3.16 |
4438 | 4936 | 2.339769 | ACTCTTTCTGTAAGGCCCTGT | 58.660 | 47.619 | 0.00 | 0.00 | 34.46 | 4.00 |
4439 | 4937 | 3.260884 | TGTACTCTTTCTGTAAGGCCCTG | 59.739 | 47.826 | 0.00 | 0.00 | 34.46 | 4.45 |
4440 | 4938 | 3.517612 | TGTACTCTTTCTGTAAGGCCCT | 58.482 | 45.455 | 0.00 | 0.00 | 34.46 | 5.19 |
4441 | 4939 | 3.975168 | TGTACTCTTTCTGTAAGGCCC | 57.025 | 47.619 | 0.00 | 0.00 | 34.46 | 5.80 |
4442 | 4940 | 5.086104 | TCATGTACTCTTTCTGTAAGGCC | 57.914 | 43.478 | 0.00 | 0.00 | 34.46 | 5.19 |
4443 | 4941 | 6.595716 | ACAATCATGTACTCTTTCTGTAAGGC | 59.404 | 38.462 | 0.00 | 0.00 | 38.24 | 4.35 |
4444 | 4942 | 7.065085 | CCACAATCATGTACTCTTTCTGTAAGG | 59.935 | 40.741 | 0.00 | 0.00 | 37.82 | 2.69 |
4445 | 4943 | 7.604164 | ACCACAATCATGTACTCTTTCTGTAAG | 59.396 | 37.037 | 0.00 | 0.00 | 37.82 | 2.34 |
4446 | 4944 | 7.387673 | CACCACAATCATGTACTCTTTCTGTAA | 59.612 | 37.037 | 0.00 | 0.00 | 37.82 | 2.41 |
4453 | 4951 | 3.244875 | TGCCACCACAATCATGTACTCTT | 60.245 | 43.478 | 0.00 | 0.00 | 37.82 | 2.85 |
4454 | 4952 | 2.305635 | TGCCACCACAATCATGTACTCT | 59.694 | 45.455 | 0.00 | 0.00 | 37.82 | 3.24 |
4458 | 4956 | 3.966979 | AGAATGCCACCACAATCATGTA | 58.033 | 40.909 | 0.00 | 0.00 | 37.82 | 2.29 |
4460 | 4958 | 3.517602 | CAAGAATGCCACCACAATCATG | 58.482 | 45.455 | 0.00 | 0.00 | 0.00 | 3.07 |
4480 | 4978 | 6.318648 | GTGGTTACTTCATTCCTGATATTGCA | 59.681 | 38.462 | 0.00 | 0.00 | 0.00 | 4.08 |
4497 | 4995 | 7.011499 | TGTATATGAGTTTGGTGTGGTTACT | 57.989 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
4534 | 5035 | 1.927487 | TCCATGCCAAGCTGACATTT | 58.073 | 45.000 | 0.00 | 0.00 | 0.00 | 2.32 |
4537 | 5038 | 2.876581 | CATCCATGCCAAGCTGACA | 58.123 | 52.632 | 0.00 | 0.00 | 0.00 | 3.58 |
4548 | 5049 | 0.747644 | TTGGCGTGGTAGCATCCATG | 60.748 | 55.000 | 16.29 | 12.97 | 44.65 | 3.66 |
4560 | 5079 | 3.305964 | CGAGTACATACCTATTGGCGTG | 58.694 | 50.000 | 0.00 | 0.00 | 36.63 | 5.34 |
4563 | 5082 | 3.319972 | TGTCCGAGTACATACCTATTGGC | 59.680 | 47.826 | 0.00 | 0.00 | 36.63 | 4.52 |
4564 | 5083 | 5.010719 | ACATGTCCGAGTACATACCTATTGG | 59.989 | 44.000 | 0.00 | 0.00 | 38.01 | 3.16 |
4565 | 5084 | 6.016192 | AGACATGTCCGAGTACATACCTATTG | 60.016 | 42.308 | 22.21 | 0.00 | 38.01 | 1.90 |
4595 | 5120 | 0.611896 | TCTCCACCGAGACATGCTGA | 60.612 | 55.000 | 0.00 | 0.00 | 40.34 | 4.26 |
4600 | 5125 | 1.276421 | CCTTGTTCTCCACCGAGACAT | 59.724 | 52.381 | 0.00 | 0.00 | 45.01 | 3.06 |
4631 | 5156 | 4.025401 | GCGAGGGCGTGTTTGGTG | 62.025 | 66.667 | 0.00 | 0.00 | 40.36 | 4.17 |
4641 | 5166 | 2.202756 | CCTAGTGAACGCGAGGGC | 60.203 | 66.667 | 15.93 | 0.00 | 0.00 | 5.19 |
4655 | 5180 | 1.776662 | AGCAATAGACTCCACGCCTA | 58.223 | 50.000 | 0.00 | 0.00 | 0.00 | 3.93 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.