Multiple sequence alignment - TraesCS4B01G310500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G310500 chr4B 100.000 3326 0 0 1 3326 600670096 600666771 0.000000e+00 6143.0
1 TraesCS4B01G310500 chr4B 84.375 64 9 1 111 173 4707067 4707004 9.960000e-06 62.1
2 TraesCS4B01G310500 chr4D 93.871 2333 97 13 705 3001 476314299 476311977 0.000000e+00 3474.0
3 TraesCS4B01G310500 chr4D 81.879 298 40 13 3032 3326 476311980 476311694 4.290000e-59 239.0
4 TraesCS4B01G310500 chr4A 87.416 2670 195 64 718 3326 683496815 683494226 0.000000e+00 2939.0
5 TraesCS4B01G310500 chr4A 89.017 173 16 3 1 172 683498854 683498684 9.350000e-51 211.0
6 TraesCS4B01G310500 chr4A 81.250 272 24 13 291 535 683498674 683498403 9.420000e-46 195.0
7 TraesCS4B01G310500 chr1D 90.351 114 11 0 179 292 29961351 29961238 2.070000e-32 150.0
8 TraesCS4B01G310500 chr1D 88.889 117 10 2 179 292 479763137 479763021 1.240000e-29 141.0
9 TraesCS4B01G310500 chr1D 97.143 35 0 1 140 173 245217223 245217257 1.290000e-04 58.4
10 TraesCS4B01G310500 chr5B 90.179 112 11 0 179 290 664418069 664418180 2.670000e-31 147.0
11 TraesCS4B01G310500 chr5D 89.189 111 10 2 183 292 439260123 439260232 1.610000e-28 137.0
12 TraesCS4B01G310500 chr5D 84.375 64 9 1 111 173 310276715 310276652 9.960000e-06 62.1
13 TraesCS4B01G310500 chr2A 90.000 70 7 0 566 635 147203433 147203502 1.270000e-14 91.6
14 TraesCS4B01G310500 chr2A 87.500 64 7 1 111 173 695156855 695156792 4.600000e-09 73.1
15 TraesCS4B01G310500 chr6A 85.938 64 7 2 111 173 575302633 575302695 2.140000e-07 67.6
16 TraesCS4B01G310500 chr7B 85.714 63 7 2 111 172 28687748 28687809 7.700000e-07 65.8
17 TraesCS4B01G310500 chr2B 81.013 79 13 2 557 635 583993780 583993856 9.960000e-06 62.1
18 TraesCS4B01G310500 chr1A 97.222 36 0 1 140 174 306569161 306569196 3.580000e-05 60.2
19 TraesCS4B01G310500 chr1A 97.143 35 0 1 140 173 527180458 527180424 1.290000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G310500 chr4B 600666771 600670096 3325 True 6143.0 6143 100.000000 1 3326 1 chr4B.!!$R2 3325
1 TraesCS4B01G310500 chr4D 476311694 476314299 2605 True 1856.5 3474 87.875000 705 3326 2 chr4D.!!$R1 2621
2 TraesCS4B01G310500 chr4A 683494226 683498854 4628 True 1115.0 2939 85.894333 1 3326 3 chr4A.!!$R1 3325

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
262 263 0.176680 TGAAAAGGCCGCAAAAGCAA 59.823 45.0 0.0 0.0 0.00 3.91 F
474 502 0.402121 AGAACAAGGGTGAGAAGGCC 59.598 55.0 0.0 0.0 0.00 5.19 F
1266 2859 0.539051 CAACCGATGAAGGAGAGGCT 59.461 55.0 0.0 0.0 34.73 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2232 3825 0.326264 GGGTCCTGAGTGACATTGCT 59.674 55.000 4.03 0.0 36.97 3.91 R
2275 3868 2.282958 TCTGACCTCGCCGGACTT 60.283 61.111 5.05 0.0 36.31 3.01 R
2608 4250 0.798776 GCAGAACGCTGTATGTGCTT 59.201 50.000 0.00 0.0 44.17 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.867903 TGGTTCAATGTTTTCCATGTCTT 57.132 34.783 0.00 0.00 32.82 3.01
26 27 5.362143 TGGTTCAATGTTTTCCATGTCTTGA 59.638 36.000 0.00 0.00 32.82 3.02
81 82 4.836125 TGTTGAAATCTTGCTGGAACTC 57.164 40.909 0.00 0.00 0.00 3.01
88 89 7.394016 TGAAATCTTGCTGGAACTCTGTATAA 58.606 34.615 0.00 0.00 0.00 0.98
92 93 7.615582 TCTTGCTGGAACTCTGTATAAAATG 57.384 36.000 0.00 0.00 0.00 2.32
94 95 5.252547 TGCTGGAACTCTGTATAAAATGCA 58.747 37.500 0.00 0.00 0.00 3.96
176 177 8.910351 AAGTAATGATCTAAATGTCTTAGGCC 57.090 34.615 0.00 0.00 0.00 5.19
177 178 7.454225 AGTAATGATCTAAATGTCTTAGGCCC 58.546 38.462 0.00 0.00 0.00 5.80
178 179 6.521527 AATGATCTAAATGTCTTAGGCCCT 57.478 37.500 0.00 0.00 0.00 5.19
179 180 5.552870 TGATCTAAATGTCTTAGGCCCTC 57.447 43.478 0.00 0.00 0.00 4.30
180 181 4.968719 TGATCTAAATGTCTTAGGCCCTCA 59.031 41.667 0.00 0.00 0.00 3.86
181 182 5.608437 TGATCTAAATGTCTTAGGCCCTCAT 59.392 40.000 0.00 0.00 0.00 2.90
182 183 5.552870 TCTAAATGTCTTAGGCCCTCATC 57.447 43.478 0.00 0.00 0.00 2.92
183 184 4.968719 TCTAAATGTCTTAGGCCCTCATCA 59.031 41.667 0.00 0.00 0.00 3.07
184 185 4.591321 AAATGTCTTAGGCCCTCATCAA 57.409 40.909 0.00 0.00 0.00 2.57
185 186 4.591321 AATGTCTTAGGCCCTCATCAAA 57.409 40.909 0.00 0.00 0.00 2.69
186 187 4.591321 ATGTCTTAGGCCCTCATCAAAA 57.409 40.909 0.00 0.00 0.00 2.44
187 188 3.955471 TGTCTTAGGCCCTCATCAAAAG 58.045 45.455 0.00 0.00 0.00 2.27
188 189 2.685388 GTCTTAGGCCCTCATCAAAAGC 59.315 50.000 0.00 0.00 0.00 3.51
189 190 2.027385 CTTAGGCCCTCATCAAAAGCC 58.973 52.381 0.00 0.00 44.20 4.35
190 191 0.998928 TAGGCCCTCATCAAAAGCCA 59.001 50.000 0.00 0.00 46.35 4.75
191 192 0.337428 AGGCCCTCATCAAAAGCCAT 59.663 50.000 0.00 0.00 46.35 4.40
192 193 1.570501 AGGCCCTCATCAAAAGCCATA 59.429 47.619 0.00 0.00 46.35 2.74
193 194 2.024080 AGGCCCTCATCAAAAGCCATAA 60.024 45.455 0.00 0.00 46.35 1.90
194 195 2.765699 GGCCCTCATCAAAAGCCATAAA 59.234 45.455 0.00 0.00 43.32 1.40
195 196 3.197549 GGCCCTCATCAAAAGCCATAAAA 59.802 43.478 0.00 0.00 43.32 1.52
196 197 4.436332 GCCCTCATCAAAAGCCATAAAAG 58.564 43.478 0.00 0.00 0.00 2.27
197 198 4.436332 CCCTCATCAAAAGCCATAAAAGC 58.564 43.478 0.00 0.00 0.00 3.51
198 199 4.436332 CCTCATCAAAAGCCATAAAAGCC 58.564 43.478 0.00 0.00 0.00 4.35
199 200 4.436332 CTCATCAAAAGCCATAAAAGCCC 58.564 43.478 0.00 0.00 0.00 5.19
200 201 3.197549 TCATCAAAAGCCATAAAAGCCCC 59.802 43.478 0.00 0.00 0.00 5.80
201 202 2.614259 TCAAAAGCCATAAAAGCCCCA 58.386 42.857 0.00 0.00 0.00 4.96
202 203 2.975489 TCAAAAGCCATAAAAGCCCCAA 59.025 40.909 0.00 0.00 0.00 4.12
203 204 3.392616 TCAAAAGCCATAAAAGCCCCAAA 59.607 39.130 0.00 0.00 0.00 3.28
204 205 4.140536 CAAAAGCCATAAAAGCCCCAAAA 58.859 39.130 0.00 0.00 0.00 2.44
205 206 3.701205 AAGCCATAAAAGCCCCAAAAG 57.299 42.857 0.00 0.00 0.00 2.27
206 207 2.901291 AGCCATAAAAGCCCCAAAAGA 58.099 42.857 0.00 0.00 0.00 2.52
207 208 3.247162 AGCCATAAAAGCCCCAAAAGAA 58.753 40.909 0.00 0.00 0.00 2.52
208 209 3.845992 AGCCATAAAAGCCCCAAAAGAAT 59.154 39.130 0.00 0.00 0.00 2.40
209 210 4.080919 AGCCATAAAAGCCCCAAAAGAATC 60.081 41.667 0.00 0.00 0.00 2.52
210 211 4.080919 GCCATAAAAGCCCCAAAAGAATCT 60.081 41.667 0.00 0.00 0.00 2.40
211 212 5.128663 GCCATAAAAGCCCCAAAAGAATCTA 59.871 40.000 0.00 0.00 0.00 1.98
212 213 6.183361 GCCATAAAAGCCCCAAAAGAATCTAT 60.183 38.462 0.00 0.00 0.00 1.98
213 214 7.635750 GCCATAAAAGCCCCAAAAGAATCTATT 60.636 37.037 0.00 0.00 0.00 1.73
214 215 8.267183 CCATAAAAGCCCCAAAAGAATCTATTT 58.733 33.333 0.00 0.00 0.00 1.40
217 218 7.423844 AAAGCCCCAAAAGAATCTATTTAGG 57.576 36.000 0.00 0.00 0.00 2.69
218 219 6.341408 AGCCCCAAAAGAATCTATTTAGGA 57.659 37.500 4.83 0.00 0.00 2.94
219 220 6.368805 AGCCCCAAAAGAATCTATTTAGGAG 58.631 40.000 4.83 0.00 0.00 3.69
220 221 5.010112 GCCCCAAAAGAATCTATTTAGGAGC 59.990 44.000 4.83 0.00 0.00 4.70
221 222 6.368805 CCCCAAAAGAATCTATTTAGGAGCT 58.631 40.000 0.00 0.00 0.00 4.09
222 223 6.836007 CCCCAAAAGAATCTATTTAGGAGCTT 59.164 38.462 0.00 0.00 0.00 3.74
223 224 7.343057 CCCCAAAAGAATCTATTTAGGAGCTTT 59.657 37.037 0.00 0.00 0.00 3.51
224 225 8.753133 CCCAAAAGAATCTATTTAGGAGCTTTT 58.247 33.333 0.00 0.00 34.60 2.27
237 238 7.833285 TTAGGAGCTTTTATGTCTTTTTGGT 57.167 32.000 0.00 0.00 0.00 3.67
238 239 6.332735 AGGAGCTTTTATGTCTTTTTGGTC 57.667 37.500 0.00 0.00 0.00 4.02
239 240 5.833131 AGGAGCTTTTATGTCTTTTTGGTCA 59.167 36.000 0.00 0.00 0.00 4.02
240 241 6.323739 AGGAGCTTTTATGTCTTTTTGGTCAA 59.676 34.615 0.00 0.00 0.00 3.18
241 242 6.983890 GGAGCTTTTATGTCTTTTTGGTCAAA 59.016 34.615 0.00 0.00 0.00 2.69
242 243 7.494298 GGAGCTTTTATGTCTTTTTGGTCAAAA 59.506 33.333 4.92 4.92 38.40 2.44
243 244 8.962884 AGCTTTTATGTCTTTTTGGTCAAAAT 57.037 26.923 9.32 0.00 39.69 1.82
244 245 8.829612 AGCTTTTATGTCTTTTTGGTCAAAATG 58.170 29.630 9.32 11.29 39.69 2.32
245 246 8.825745 GCTTTTATGTCTTTTTGGTCAAAATGA 58.174 29.630 15.92 15.92 39.69 2.57
250 251 7.608308 TGTCTTTTTGGTCAAAATGAAAAGG 57.392 32.000 19.36 0.00 42.29 3.11
251 252 6.093357 TGTCTTTTTGGTCAAAATGAAAAGGC 59.907 34.615 19.36 11.82 42.29 4.35
252 253 5.588246 TCTTTTTGGTCAAAATGAAAAGGCC 59.412 36.000 16.93 0.00 39.73 5.19
253 254 2.810439 TGGTCAAAATGAAAAGGCCG 57.190 45.000 0.00 0.00 0.00 6.13
254 255 1.270041 TGGTCAAAATGAAAAGGCCGC 60.270 47.619 0.00 0.00 0.00 6.53
255 256 1.270041 GGTCAAAATGAAAAGGCCGCA 60.270 47.619 0.00 0.00 0.00 5.69
256 257 2.478831 GTCAAAATGAAAAGGCCGCAA 58.521 42.857 0.00 0.00 0.00 4.85
257 258 2.869192 GTCAAAATGAAAAGGCCGCAAA 59.131 40.909 0.00 0.00 0.00 3.68
258 259 3.311048 GTCAAAATGAAAAGGCCGCAAAA 59.689 39.130 0.00 0.00 0.00 2.44
259 260 3.559242 TCAAAATGAAAAGGCCGCAAAAG 59.441 39.130 0.00 0.00 0.00 2.27
260 261 1.511850 AATGAAAAGGCCGCAAAAGC 58.488 45.000 0.00 0.00 0.00 3.51
261 262 0.392336 ATGAAAAGGCCGCAAAAGCA 59.608 45.000 0.00 0.00 0.00 3.91
262 263 0.176680 TGAAAAGGCCGCAAAAGCAA 59.823 45.000 0.00 0.00 0.00 3.91
263 264 1.294857 GAAAAGGCCGCAAAAGCAAA 58.705 45.000 0.00 0.00 0.00 3.68
264 265 1.668237 GAAAAGGCCGCAAAAGCAAAA 59.332 42.857 0.00 0.00 0.00 2.44
265 266 1.298602 AAAGGCCGCAAAAGCAAAAG 58.701 45.000 0.00 0.00 0.00 2.27
266 267 1.159713 AAGGCCGCAAAAGCAAAAGC 61.160 50.000 0.00 0.00 0.00 3.51
267 268 1.886777 GGCCGCAAAAGCAAAAGCA 60.887 52.632 0.00 0.00 0.00 3.91
268 269 1.566077 GCCGCAAAAGCAAAAGCAG 59.434 52.632 0.00 0.00 0.00 4.24
269 270 0.875474 GCCGCAAAAGCAAAAGCAGA 60.875 50.000 0.00 0.00 0.00 4.26
270 271 1.569708 CCGCAAAAGCAAAAGCAGAA 58.430 45.000 0.00 0.00 0.00 3.02
271 272 1.523934 CCGCAAAAGCAAAAGCAGAAG 59.476 47.619 0.00 0.00 0.00 2.85
272 273 1.071041 CGCAAAAGCAAAAGCAGAAGC 60.071 47.619 0.00 0.00 42.56 3.86
273 274 1.262417 GCAAAAGCAAAAGCAGAAGCC 59.738 47.619 0.00 0.00 43.56 4.35
274 275 1.869132 CAAAAGCAAAAGCAGAAGCCC 59.131 47.619 0.00 0.00 43.56 5.19
275 276 1.122227 AAAGCAAAAGCAGAAGCCCA 58.878 45.000 0.00 0.00 43.56 5.36
276 277 1.122227 AAGCAAAAGCAGAAGCCCAA 58.878 45.000 0.00 0.00 43.56 4.12
277 278 1.122227 AGCAAAAGCAGAAGCCCAAA 58.878 45.000 0.00 0.00 43.56 3.28
278 279 1.202568 AGCAAAAGCAGAAGCCCAAAC 60.203 47.619 0.00 0.00 43.56 2.93
279 280 1.473080 GCAAAAGCAGAAGCCCAAACA 60.473 47.619 0.00 0.00 43.56 2.83
280 281 2.903798 CAAAAGCAGAAGCCCAAACAA 58.096 42.857 0.00 0.00 43.56 2.83
281 282 3.269178 CAAAAGCAGAAGCCCAAACAAA 58.731 40.909 0.00 0.00 43.56 2.83
282 283 2.602257 AAGCAGAAGCCCAAACAAAC 57.398 45.000 0.00 0.00 43.56 2.93
283 284 1.484038 AGCAGAAGCCCAAACAAACA 58.516 45.000 0.00 0.00 43.56 2.83
284 285 1.410153 AGCAGAAGCCCAAACAAACAG 59.590 47.619 0.00 0.00 43.56 3.16
285 286 1.538849 GCAGAAGCCCAAACAAACAGG 60.539 52.381 0.00 0.00 33.58 4.00
286 287 1.069049 CAGAAGCCCAAACAAACAGGG 59.931 52.381 0.00 0.00 45.68 4.45
289 290 4.293610 CCCAAACAAACAGGGCCT 57.706 55.556 0.00 0.00 35.44 5.19
296 297 3.306472 AACAAACAGGGCCTTACAGAA 57.694 42.857 1.32 0.00 0.00 3.02
297 298 3.306472 ACAAACAGGGCCTTACAGAAA 57.694 42.857 1.32 0.00 0.00 2.52
301 302 2.339769 ACAGGGCCTTACAGAAAGAGT 58.660 47.619 1.32 0.00 37.38 3.24
303 304 3.261137 ACAGGGCCTTACAGAAAGAGTAC 59.739 47.826 1.32 0.00 37.38 2.73
323 324 3.167485 ACATGATTGTGGTGGCATTCTT 58.833 40.909 0.00 0.00 33.85 2.52
351 352 4.015872 TCAGGAATGAAGTAACCACACC 57.984 45.455 0.00 0.00 0.00 4.16
352 353 3.392947 TCAGGAATGAAGTAACCACACCA 59.607 43.478 0.00 0.00 0.00 4.17
387 391 5.710513 TGCTATCAAACAAAATGTCAGCT 57.289 34.783 0.00 0.00 31.52 4.24
388 392 6.088016 TGCTATCAAACAAAATGTCAGCTT 57.912 33.333 0.00 0.00 31.52 3.74
390 394 5.346822 GCTATCAAACAAAATGTCAGCTTGG 59.653 40.000 0.00 0.00 0.00 3.61
391 395 3.456280 TCAAACAAAATGTCAGCTTGGC 58.544 40.909 0.00 0.00 0.00 4.52
408 430 3.736483 CATGGATGCTACCACGCC 58.264 61.111 4.71 0.00 43.03 5.68
426 454 2.555325 CGCCAATAGGTATGTACTCGGA 59.445 50.000 0.00 0.00 37.19 4.55
438 466 4.217836 TGTACTCGGACATGTCTAGAGT 57.782 45.455 35.72 35.72 43.71 3.24
443 471 1.745653 CGGACATGTCTAGAGTCAGCA 59.254 52.381 24.50 0.00 34.04 4.41
474 502 0.402121 AGAACAAGGGTGAGAAGGCC 59.598 55.000 0.00 0.00 0.00 5.19
484 512 0.817634 TGAGAAGGCCACCAAACACG 60.818 55.000 5.01 0.00 0.00 4.49
512 540 2.089980 GTTCACTAGGCGTGGAGTCTA 58.910 52.381 0.00 0.00 43.94 2.59
519 547 2.320781 AGGCGTGGAGTCTATTGCTAT 58.679 47.619 4.20 0.00 29.53 2.97
520 548 2.297597 AGGCGTGGAGTCTATTGCTATC 59.702 50.000 4.20 0.00 29.53 2.08
522 550 2.610727 GCGTGGAGTCTATTGCTATCCC 60.611 54.545 0.00 0.00 0.00 3.85
541 941 6.704056 ATCCCTTTACCATGGTATAAGAGG 57.296 41.667 29.32 26.69 0.00 3.69
543 943 6.399013 TCCCTTTACCATGGTATAAGAGGAT 58.601 40.000 29.32 8.34 0.00 3.24
544 944 6.272324 TCCCTTTACCATGGTATAAGAGGATG 59.728 42.308 29.32 20.01 0.00 3.51
545 945 6.272324 CCCTTTACCATGGTATAAGAGGATGA 59.728 42.308 29.32 12.55 0.00 2.92
547 947 8.217799 CCTTTACCATGGTATAAGAGGATGAAA 58.782 37.037 29.32 18.15 0.00 2.69
548 948 8.974060 TTTACCATGGTATAAGAGGATGAAAC 57.026 34.615 25.12 0.00 0.00 2.78
549 949 5.941788 ACCATGGTATAAGAGGATGAAACC 58.058 41.667 18.10 0.00 0.00 3.27
550 950 4.997395 CCATGGTATAAGAGGATGAAACCG 59.003 45.833 2.57 0.00 34.73 4.44
552 952 5.272283 TGGTATAAGAGGATGAAACCGTC 57.728 43.478 0.00 0.00 34.73 4.79
568 996 4.602340 ACCGTCATGTTTGTCTTCTACT 57.398 40.909 0.00 0.00 0.00 2.57
569 997 4.557205 ACCGTCATGTTTGTCTTCTACTC 58.443 43.478 0.00 0.00 0.00 2.59
570 998 4.281182 ACCGTCATGTTTGTCTTCTACTCT 59.719 41.667 0.00 0.00 0.00 3.24
571 999 4.859798 CCGTCATGTTTGTCTTCTACTCTC 59.140 45.833 0.00 0.00 0.00 3.20
572 1000 5.336055 CCGTCATGTTTGTCTTCTACTCTCT 60.336 44.000 0.00 0.00 0.00 3.10
573 1001 5.797934 CGTCATGTTTGTCTTCTACTCTCTC 59.202 44.000 0.00 0.00 0.00 3.20
574 1002 6.096695 GTCATGTTTGTCTTCTACTCTCTCC 58.903 44.000 0.00 0.00 0.00 3.71
575 1003 4.768130 TGTTTGTCTTCTACTCTCTCCG 57.232 45.455 0.00 0.00 0.00 4.63
576 1004 4.142790 TGTTTGTCTTCTACTCTCTCCGT 58.857 43.478 0.00 0.00 0.00 4.69
577 1005 4.583489 TGTTTGTCTTCTACTCTCTCCGTT 59.417 41.667 0.00 0.00 0.00 4.44
578 1006 5.155643 GTTTGTCTTCTACTCTCTCCGTTC 58.844 45.833 0.00 0.00 0.00 3.95
579 1007 3.345414 TGTCTTCTACTCTCTCCGTTCC 58.655 50.000 0.00 0.00 0.00 3.62
580 1008 3.009253 TGTCTTCTACTCTCTCCGTTCCT 59.991 47.826 0.00 0.00 0.00 3.36
581 1009 4.224594 TGTCTTCTACTCTCTCCGTTCCTA 59.775 45.833 0.00 0.00 0.00 2.94
582 1010 5.184711 GTCTTCTACTCTCTCCGTTCCTAA 58.815 45.833 0.00 0.00 0.00 2.69
583 1011 5.647225 GTCTTCTACTCTCTCCGTTCCTAAA 59.353 44.000 0.00 0.00 0.00 1.85
584 1012 6.319405 GTCTTCTACTCTCTCCGTTCCTAAAT 59.681 42.308 0.00 0.00 0.00 1.40
585 1013 7.498570 GTCTTCTACTCTCTCCGTTCCTAAATA 59.501 40.741 0.00 0.00 0.00 1.40
586 1014 7.498570 TCTTCTACTCTCTCCGTTCCTAAATAC 59.501 40.741 0.00 0.00 0.00 1.89
587 1015 6.897986 TCTACTCTCTCCGTTCCTAAATACT 58.102 40.000 0.00 0.00 0.00 2.12
588 1016 7.344913 TCTACTCTCTCCGTTCCTAAATACTT 58.655 38.462 0.00 0.00 0.00 2.24
589 1017 6.453926 ACTCTCTCCGTTCCTAAATACTTC 57.546 41.667 0.00 0.00 0.00 3.01
590 1018 6.189133 ACTCTCTCCGTTCCTAAATACTTCT 58.811 40.000 0.00 0.00 0.00 2.85
591 1019 6.319405 ACTCTCTCCGTTCCTAAATACTTCTC 59.681 42.308 0.00 0.00 0.00 2.87
592 1020 6.424883 TCTCTCCGTTCCTAAATACTTCTCT 58.575 40.000 0.00 0.00 0.00 3.10
593 1021 6.890814 TCTCTCCGTTCCTAAATACTTCTCTT 59.109 38.462 0.00 0.00 0.00 2.85
594 1022 7.396623 TCTCTCCGTTCCTAAATACTTCTCTTT 59.603 37.037 0.00 0.00 0.00 2.52
595 1023 7.904205 TCTCCGTTCCTAAATACTTCTCTTTT 58.096 34.615 0.00 0.00 0.00 2.27
596 1024 8.373220 TCTCCGTTCCTAAATACTTCTCTTTTT 58.627 33.333 0.00 0.00 0.00 1.94
597 1025 9.649167 CTCCGTTCCTAAATACTTCTCTTTTTA 57.351 33.333 0.00 0.00 0.00 1.52
598 1026 9.649167 TCCGTTCCTAAATACTTCTCTTTTTAG 57.351 33.333 0.00 0.00 33.47 1.85
599 1027 9.649167 CCGTTCCTAAATACTTCTCTTTTTAGA 57.351 33.333 0.00 0.00 34.90 2.10
623 1051 9.988815 AGAGATATCAAATGAAGTACCACATAC 57.011 33.333 5.32 0.00 0.00 2.39
624 1052 8.818141 AGATATCAAATGAAGTACCACATACG 57.182 34.615 5.32 0.00 38.97 3.06
625 1053 8.638873 AGATATCAAATGAAGTACCACATACGA 58.361 33.333 5.32 4.17 38.97 3.43
626 1054 9.256477 GATATCAAATGAAGTACCACATACGAA 57.744 33.333 0.00 0.00 38.97 3.85
627 1055 7.915293 ATCAAATGAAGTACCACATACGAAA 57.085 32.000 0.00 0.00 38.97 3.46
628 1056 7.359262 TCAAATGAAGTACCACATACGAAAG 57.641 36.000 0.00 0.00 38.97 2.62
660 1088 7.559590 ACTCATTTTGCTCCTATGTATTCAC 57.440 36.000 0.00 0.00 0.00 3.18
661 1089 7.341805 ACTCATTTTGCTCCTATGTATTCACT 58.658 34.615 0.00 0.00 0.00 3.41
662 1090 7.831193 ACTCATTTTGCTCCTATGTATTCACTT 59.169 33.333 0.00 0.00 0.00 3.16
663 1091 7.988737 TCATTTTGCTCCTATGTATTCACTTG 58.011 34.615 0.00 0.00 0.00 3.16
664 1092 7.611467 TCATTTTGCTCCTATGTATTCACTTGT 59.389 33.333 0.00 0.00 0.00 3.16
665 1093 7.759489 TTTTGCTCCTATGTATTCACTTGTT 57.241 32.000 0.00 0.00 0.00 2.83
666 1094 6.741992 TTGCTCCTATGTATTCACTTGTTG 57.258 37.500 0.00 0.00 0.00 3.33
667 1095 6.048732 TGCTCCTATGTATTCACTTGTTGA 57.951 37.500 0.00 0.00 0.00 3.18
696 1124 8.231837 TCTTTAAAAAGACATATTTCGGAACGG 58.768 33.333 1.00 0.00 46.03 4.44
697 1125 8.231837 CTTTAAAAAGACATATTTCGGAACGGA 58.768 33.333 0.00 0.00 45.65 4.69
845 2413 3.689161 GGGATTTTTATTGCAAAGCCACC 59.311 43.478 1.71 1.70 40.79 4.61
972 2554 2.672295 CGAACCCGGAATTCCCCA 59.328 61.111 19.01 0.00 0.00 4.96
1218 2811 1.734388 GCAACACCTGGGTCAACACC 61.734 60.000 0.00 0.00 42.90 4.16
1266 2859 0.539051 CAACCGATGAAGGAGAGGCT 59.461 55.000 0.00 0.00 34.73 4.58
1380 2973 3.953775 CAGGAACCACCCGGCAGT 61.954 66.667 0.00 0.00 40.05 4.40
1772 3365 1.271840 TACATGTGGAGGCTGGACCC 61.272 60.000 9.11 0.00 40.58 4.46
2145 3738 1.743252 CAAGAAGCCCGTCCTGCTC 60.743 63.158 0.00 0.00 38.34 4.26
2232 3825 4.228567 TGCAACGGCGAGGTCACA 62.229 61.111 16.62 0.00 45.35 3.58
2241 3834 0.950555 GCGAGGTCACAGCAATGTCA 60.951 55.000 0.00 0.00 0.00 3.58
2256 3849 3.923645 TCACTCAGGACCCCCGGT 61.924 66.667 0.00 0.00 39.44 5.28
2271 3864 4.617875 GGTGTGATCTTCACCGGG 57.382 61.111 19.20 0.00 46.40 5.73
2275 3868 0.834261 TGTGATCTTCACCGGGGACA 60.834 55.000 5.46 0.00 46.40 4.02
2276 3869 0.323629 GTGATCTTCACCGGGGACAA 59.676 55.000 5.46 0.00 41.37 3.18
2384 3983 2.031012 CGACCACTGGCAGCTTCA 59.969 61.111 15.89 0.00 0.00 3.02
2388 3987 1.615392 GACCACTGGCAGCTTCAATTT 59.385 47.619 15.89 0.00 0.00 1.82
2401 4014 3.507622 GCTTCAATTTTAGGCCAGTGAGT 59.492 43.478 5.01 0.00 0.00 3.41
2402 4015 4.021981 GCTTCAATTTTAGGCCAGTGAGTT 60.022 41.667 5.01 0.00 0.00 3.01
2403 4016 5.703876 CTTCAATTTTAGGCCAGTGAGTTC 58.296 41.667 5.01 0.00 0.00 3.01
2404 4017 3.751175 TCAATTTTAGGCCAGTGAGTTCG 59.249 43.478 5.01 0.00 0.00 3.95
2405 4018 2.922740 TTTTAGGCCAGTGAGTTCGT 57.077 45.000 5.01 0.00 0.00 3.85
2406 4019 4.546829 ATTTTAGGCCAGTGAGTTCGTA 57.453 40.909 5.01 0.00 0.00 3.43
2407 4020 3.308438 TTTAGGCCAGTGAGTTCGTAC 57.692 47.619 5.01 0.00 0.00 3.67
2408 4021 2.211250 TAGGCCAGTGAGTTCGTACT 57.789 50.000 5.01 0.00 37.31 2.73
2409 4022 1.339097 AGGCCAGTGAGTTCGTACTT 58.661 50.000 5.01 0.00 33.84 2.24
2410 4023 1.272769 AGGCCAGTGAGTTCGTACTTC 59.727 52.381 5.01 0.00 33.84 3.01
2411 4024 1.000506 GGCCAGTGAGTTCGTACTTCA 59.999 52.381 0.00 0.00 33.84 3.02
2412 4025 2.329379 GCCAGTGAGTTCGTACTTCAG 58.671 52.381 0.00 0.00 33.84 3.02
2413 4026 2.030185 GCCAGTGAGTTCGTACTTCAGA 60.030 50.000 0.00 0.00 33.84 3.27
2414 4027 3.827625 CCAGTGAGTTCGTACTTCAGAG 58.172 50.000 0.00 0.00 33.84 3.35
2430 4047 5.424895 ACTTCAGAGCAATCAGTAGGATTCT 59.575 40.000 0.00 0.00 44.41 2.40
2444 4061 8.318412 TCAGTAGGATTCTAGTGCAATGTAAAA 58.682 33.333 10.67 0.00 43.32 1.52
2470 4104 9.610104 AATACCAGTGGTTATACAGTATGGATA 57.390 33.333 22.49 0.00 41.02 2.59
2579 4220 1.422662 GTCGGGCGACGGAAATTTC 59.577 57.895 9.83 9.83 44.45 2.17
2580 4221 1.004799 TCGGGCGACGGAAATTTCA 60.005 52.632 19.49 0.00 44.45 2.69
2581 4222 0.391927 TCGGGCGACGGAAATTTCAT 60.392 50.000 19.49 7.18 44.45 2.57
2592 4234 8.067784 GCGACGGAAATTTCATAATTCTTATCA 58.932 33.333 19.49 0.00 32.85 2.15
2608 4250 9.896645 AATTCTTATCAGCTACAATCTCAAAGA 57.103 29.630 0.00 0.00 0.00 2.52
2622 4264 2.738846 CTCAAAGAAGCACATACAGCGT 59.261 45.455 0.00 0.00 37.01 5.07
2748 4403 6.068010 TGATCATCTCTCTTTCTCTCCCTAC 58.932 44.000 0.00 0.00 0.00 3.18
2883 4538 1.884235 CAAAGGTCAGAGCGTTTCCT 58.116 50.000 0.00 0.00 0.00 3.36
2943 4598 3.753193 GCCCCTCCATTATGCAAGAGAAT 60.753 47.826 0.00 0.00 0.00 2.40
3001 4656 3.916989 AGGTGTTCCTGGGTTAAGAGAAT 59.083 43.478 0.00 0.00 43.33 2.40
3002 4657 5.098663 AGGTGTTCCTGGGTTAAGAGAATA 58.901 41.667 0.00 0.00 43.33 1.75
3003 4658 5.550403 AGGTGTTCCTGGGTTAAGAGAATAA 59.450 40.000 0.00 0.00 43.33 1.40
3004 4659 6.217693 AGGTGTTCCTGGGTTAAGAGAATAAT 59.782 38.462 0.00 0.00 43.33 1.28
3005 4660 7.404980 AGGTGTTCCTGGGTTAAGAGAATAATA 59.595 37.037 0.00 0.00 43.33 0.98
3006 4661 7.715686 GGTGTTCCTGGGTTAAGAGAATAATAG 59.284 40.741 0.00 0.00 0.00 1.73
3007 4662 8.483758 GTGTTCCTGGGTTAAGAGAATAATAGA 58.516 37.037 0.00 0.00 0.00 1.98
3008 4663 9.053472 TGTTCCTGGGTTAAGAGAATAATAGAA 57.947 33.333 0.00 0.00 0.00 2.10
3009 4664 9.327628 GTTCCTGGGTTAAGAGAATAATAGAAC 57.672 37.037 0.00 0.00 0.00 3.01
3010 4665 8.030913 TCCTGGGTTAAGAGAATAATAGAACC 57.969 38.462 0.00 0.00 35.23 3.62
3011 4666 7.626084 TCCTGGGTTAAGAGAATAATAGAACCA 59.374 37.037 0.00 0.00 37.24 3.67
3012 4667 8.272173 CCTGGGTTAAGAGAATAATAGAACCAA 58.728 37.037 0.00 0.00 37.24 3.67
3013 4668 9.681062 CTGGGTTAAGAGAATAATAGAACCAAA 57.319 33.333 0.00 0.00 37.24 3.28
3014 4669 9.457436 TGGGTTAAGAGAATAATAGAACCAAAC 57.543 33.333 0.00 0.00 37.24 2.93
3015 4670 8.900781 GGGTTAAGAGAATAATAGAACCAAACC 58.099 37.037 0.00 0.00 37.24 3.27
3016 4671 8.610035 GGTTAAGAGAATAATAGAACCAAACCG 58.390 37.037 0.00 0.00 35.88 4.44
3017 4672 6.679327 AAGAGAATAATAGAACCAAACCGC 57.321 37.500 0.00 0.00 0.00 5.68
3018 4673 5.741011 AGAGAATAATAGAACCAAACCGCA 58.259 37.500 0.00 0.00 0.00 5.69
3019 4674 6.357367 AGAGAATAATAGAACCAAACCGCAT 58.643 36.000 0.00 0.00 0.00 4.73
3020 4675 6.260936 AGAGAATAATAGAACCAAACCGCATG 59.739 38.462 0.00 0.00 0.00 4.06
3021 4676 6.119536 AGAATAATAGAACCAAACCGCATGA 58.880 36.000 0.00 0.00 0.00 3.07
3022 4677 6.260936 AGAATAATAGAACCAAACCGCATGAG 59.739 38.462 0.00 0.00 0.00 2.90
3023 4678 3.627395 ATAGAACCAAACCGCATGAGA 57.373 42.857 0.00 0.00 0.00 3.27
3024 4679 2.270352 AGAACCAAACCGCATGAGAA 57.730 45.000 0.00 0.00 0.00 2.87
3025 4680 2.582052 AGAACCAAACCGCATGAGAAA 58.418 42.857 0.00 0.00 0.00 2.52
3026 4681 2.955660 AGAACCAAACCGCATGAGAAAA 59.044 40.909 0.00 0.00 0.00 2.29
3027 4682 3.573967 AGAACCAAACCGCATGAGAAAAT 59.426 39.130 0.00 0.00 0.00 1.82
3028 4683 3.302365 ACCAAACCGCATGAGAAAATG 57.698 42.857 0.00 0.00 0.00 2.32
3029 4684 2.890311 ACCAAACCGCATGAGAAAATGA 59.110 40.909 0.00 0.00 0.00 2.57
3030 4685 3.511146 ACCAAACCGCATGAGAAAATGAT 59.489 39.130 0.00 0.00 0.00 2.45
3031 4686 4.704540 ACCAAACCGCATGAGAAAATGATA 59.295 37.500 0.00 0.00 0.00 2.15
3032 4687 5.163622 ACCAAACCGCATGAGAAAATGATAG 60.164 40.000 0.00 0.00 0.00 2.08
3033 4688 5.066375 CCAAACCGCATGAGAAAATGATAGA 59.934 40.000 0.00 0.00 0.00 1.98
3034 4689 6.404623 CCAAACCGCATGAGAAAATGATAGAA 60.405 38.462 0.00 0.00 0.00 2.10
3035 4690 5.741388 ACCGCATGAGAAAATGATAGAAC 57.259 39.130 0.00 0.00 0.00 3.01
3036 4691 4.576463 ACCGCATGAGAAAATGATAGAACC 59.424 41.667 0.00 0.00 0.00 3.62
3037 4692 4.576053 CCGCATGAGAAAATGATAGAACCA 59.424 41.667 0.00 0.00 0.00 3.67
3042 4697 6.494893 TGAGAAAATGATAGAACCAAACCG 57.505 37.500 0.00 0.00 0.00 4.44
3060 4715 5.490139 AACCGCATGAGAAAATGATGTAG 57.510 39.130 0.00 0.00 0.00 2.74
3086 4741 7.172361 GCCAAAGCTCCAATAGTTAAGAGATAG 59.828 40.741 0.00 0.00 35.50 2.08
3091 4746 6.866248 GCTCCAATAGTTAAGAGATAGACTGC 59.134 42.308 0.00 0.00 0.00 4.40
3123 4785 2.948315 GGATTCTAAAGAGCAGCTTGGG 59.052 50.000 0.00 0.00 36.80 4.12
3124 4786 1.826385 TTCTAAAGAGCAGCTTGGGC 58.174 50.000 0.00 0.00 36.80 5.36
3125 4787 0.391661 TCTAAAGAGCAGCTTGGGCG 60.392 55.000 0.00 0.00 44.37 6.13
3126 4788 1.986575 CTAAAGAGCAGCTTGGGCGC 61.987 60.000 0.00 0.00 44.37 6.53
3127 4789 2.746412 TAAAGAGCAGCTTGGGCGCA 62.746 55.000 10.83 0.00 44.37 6.09
3141 4805 1.074319 GGCGCACATGCACAAATGAG 61.074 55.000 10.83 0.00 42.21 2.90
3194 4859 2.936919 TCCAATGTGCCAGCTATAGG 57.063 50.000 1.04 0.00 0.00 2.57
3208 4873 3.714144 GCTATAGGCTCATCCCTCCTTA 58.286 50.000 1.04 0.00 36.41 2.69
3209 4874 4.097418 GCTATAGGCTCATCCCTCCTTAA 58.903 47.826 1.04 0.00 36.41 1.85
3222 4887 6.295719 TCCCTCCTTAAGACACTTGAATAC 57.704 41.667 3.36 0.00 0.00 1.89
3223 4888 5.783360 TCCCTCCTTAAGACACTTGAATACA 59.217 40.000 3.36 0.00 0.00 2.29
3224 4889 6.070767 TCCCTCCTTAAGACACTTGAATACAG 60.071 42.308 3.36 0.00 0.00 2.74
3227 4894 7.311092 TCCTTAAGACACTTGAATACAGGAA 57.689 36.000 3.36 0.00 0.00 3.36
3283 4950 0.796312 CGACATAGCGGTGCAGTTTT 59.204 50.000 0.00 0.00 0.00 2.43
3310 4977 5.008415 GCTAACAAGAGATGCATGCATAACT 59.992 40.000 32.27 27.50 36.70 2.24
3312 4979 5.998454 ACAAGAGATGCATGCATAACTAC 57.002 39.130 32.27 19.35 36.70 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
161 162 5.296151 TGATGAGGGCCTAAGACATTTAG 57.704 43.478 5.73 0.00 0.00 1.85
162 163 5.708736 TTGATGAGGGCCTAAGACATTTA 57.291 39.130 5.73 0.00 0.00 1.40
166 167 3.873801 GCTTTTGATGAGGGCCTAAGACA 60.874 47.826 5.73 0.00 0.00 3.41
167 168 2.685388 GCTTTTGATGAGGGCCTAAGAC 59.315 50.000 5.73 0.00 0.00 3.01
168 169 2.357154 GGCTTTTGATGAGGGCCTAAGA 60.357 50.000 5.73 0.00 39.68 2.10
169 170 2.027385 GGCTTTTGATGAGGGCCTAAG 58.973 52.381 5.73 6.57 39.68 2.18
170 171 1.357420 TGGCTTTTGATGAGGGCCTAA 59.643 47.619 5.73 0.00 42.84 2.69
172 173 0.337428 ATGGCTTTTGATGAGGGCCT 59.663 50.000 5.25 5.25 42.84 5.19
173 174 2.071778 TATGGCTTTTGATGAGGGCC 57.928 50.000 0.00 0.00 42.73 5.80
174 175 4.436332 CTTTTATGGCTTTTGATGAGGGC 58.564 43.478 0.00 0.00 0.00 5.19
175 176 4.436332 GCTTTTATGGCTTTTGATGAGGG 58.564 43.478 0.00 0.00 0.00 4.30
176 177 4.436332 GGCTTTTATGGCTTTTGATGAGG 58.564 43.478 0.00 0.00 0.00 3.86
177 178 4.436332 GGGCTTTTATGGCTTTTGATGAG 58.564 43.478 0.00 0.00 0.00 2.90
178 179 3.197549 GGGGCTTTTATGGCTTTTGATGA 59.802 43.478 0.00 0.00 0.00 2.92
179 180 3.055240 TGGGGCTTTTATGGCTTTTGATG 60.055 43.478 0.00 0.00 0.00 3.07
180 181 3.180507 TGGGGCTTTTATGGCTTTTGAT 58.819 40.909 0.00 0.00 0.00 2.57
181 182 2.614259 TGGGGCTTTTATGGCTTTTGA 58.386 42.857 0.00 0.00 0.00 2.69
182 183 3.415457 TTGGGGCTTTTATGGCTTTTG 57.585 42.857 0.00 0.00 0.00 2.44
183 184 4.103943 TCTTTTGGGGCTTTTATGGCTTTT 59.896 37.500 0.00 0.00 0.00 2.27
184 185 3.650461 TCTTTTGGGGCTTTTATGGCTTT 59.350 39.130 0.00 0.00 0.00 3.51
185 186 3.247162 TCTTTTGGGGCTTTTATGGCTT 58.753 40.909 0.00 0.00 0.00 4.35
186 187 2.901291 TCTTTTGGGGCTTTTATGGCT 58.099 42.857 0.00 0.00 0.00 4.75
187 188 3.694043 TTCTTTTGGGGCTTTTATGGC 57.306 42.857 0.00 0.00 0.00 4.40
188 189 5.682234 AGATTCTTTTGGGGCTTTTATGG 57.318 39.130 0.00 0.00 0.00 2.74
191 192 8.977412 CCTAAATAGATTCTTTTGGGGCTTTTA 58.023 33.333 12.05 0.00 31.78 1.52
192 193 7.678171 TCCTAAATAGATTCTTTTGGGGCTTTT 59.322 33.333 16.27 0.00 35.03 2.27
193 194 7.189087 TCCTAAATAGATTCTTTTGGGGCTTT 58.811 34.615 16.27 0.00 35.03 3.51
194 195 6.741724 TCCTAAATAGATTCTTTTGGGGCTT 58.258 36.000 16.27 0.00 35.03 4.35
195 196 6.341408 TCCTAAATAGATTCTTTTGGGGCT 57.659 37.500 16.27 0.00 35.03 5.19
196 197 5.010112 GCTCCTAAATAGATTCTTTTGGGGC 59.990 44.000 16.27 12.48 43.96 5.80
197 198 6.368805 AGCTCCTAAATAGATTCTTTTGGGG 58.631 40.000 16.27 8.18 35.03 4.96
198 199 7.888250 AAGCTCCTAAATAGATTCTTTTGGG 57.112 36.000 12.97 12.97 35.45 4.12
211 212 8.870116 ACCAAAAAGACATAAAAGCTCCTAAAT 58.130 29.630 0.00 0.00 0.00 1.40
212 213 8.245195 ACCAAAAAGACATAAAAGCTCCTAAA 57.755 30.769 0.00 0.00 0.00 1.85
213 214 7.504238 TGACCAAAAAGACATAAAAGCTCCTAA 59.496 33.333 0.00 0.00 0.00 2.69
214 215 7.001674 TGACCAAAAAGACATAAAAGCTCCTA 58.998 34.615 0.00 0.00 0.00 2.94
215 216 5.833131 TGACCAAAAAGACATAAAAGCTCCT 59.167 36.000 0.00 0.00 0.00 3.69
216 217 6.084326 TGACCAAAAAGACATAAAAGCTCC 57.916 37.500 0.00 0.00 0.00 4.70
217 218 8.419076 TTTTGACCAAAAAGACATAAAAGCTC 57.581 30.769 5.53 0.00 37.35 4.09
218 219 8.829612 CATTTTGACCAAAAAGACATAAAAGCT 58.170 29.630 11.34 0.00 42.71 3.74
219 220 8.825745 TCATTTTGACCAAAAAGACATAAAAGC 58.174 29.630 11.34 0.00 42.71 3.51
224 225 9.323985 CCTTTTCATTTTGACCAAAAAGACATA 57.676 29.630 11.34 0.00 42.71 2.29
225 226 7.201723 GCCTTTTCATTTTGACCAAAAAGACAT 60.202 33.333 11.34 0.00 42.71 3.06
226 227 6.093357 GCCTTTTCATTTTGACCAAAAAGACA 59.907 34.615 11.34 4.13 42.71 3.41
227 228 6.458206 GGCCTTTTCATTTTGACCAAAAAGAC 60.458 38.462 11.34 2.12 42.71 3.01
228 229 5.588246 GGCCTTTTCATTTTGACCAAAAAGA 59.412 36.000 11.34 9.84 42.71 2.52
229 230 5.503846 CGGCCTTTTCATTTTGACCAAAAAG 60.504 40.000 11.34 7.83 42.71 2.27
230 231 4.333926 CGGCCTTTTCATTTTGACCAAAAA 59.666 37.500 11.34 0.00 42.71 1.94
231 232 3.873952 CGGCCTTTTCATTTTGACCAAAA 59.126 39.130 9.94 9.94 43.48 2.44
232 233 3.462021 CGGCCTTTTCATTTTGACCAAA 58.538 40.909 0.00 0.00 0.00 3.28
233 234 2.804933 GCGGCCTTTTCATTTTGACCAA 60.805 45.455 0.00 0.00 0.00 3.67
234 235 1.270041 GCGGCCTTTTCATTTTGACCA 60.270 47.619 0.00 0.00 0.00 4.02
235 236 1.270041 TGCGGCCTTTTCATTTTGACC 60.270 47.619 0.00 0.00 0.00 4.02
236 237 2.147436 TGCGGCCTTTTCATTTTGAC 57.853 45.000 0.00 0.00 0.00 3.18
237 238 2.898729 TTGCGGCCTTTTCATTTTGA 57.101 40.000 0.00 0.00 0.00 2.69
238 239 3.849281 GCTTTTGCGGCCTTTTCATTTTG 60.849 43.478 0.00 0.00 34.86 2.44
239 240 2.290367 GCTTTTGCGGCCTTTTCATTTT 59.710 40.909 0.00 0.00 34.86 1.82
240 241 1.872952 GCTTTTGCGGCCTTTTCATTT 59.127 42.857 0.00 0.00 34.86 2.32
241 242 1.511850 GCTTTTGCGGCCTTTTCATT 58.488 45.000 0.00 0.00 34.86 2.57
242 243 3.215642 GCTTTTGCGGCCTTTTCAT 57.784 47.368 0.00 0.00 34.86 2.57
243 244 4.748409 GCTTTTGCGGCCTTTTCA 57.252 50.000 0.00 0.00 34.86 2.69
260 261 2.600470 TGTTTGGGCTTCTGCTTTTG 57.400 45.000 0.00 0.00 39.59 2.44
261 262 3.270027 GTTTGTTTGGGCTTCTGCTTTT 58.730 40.909 0.00 0.00 39.59 2.27
262 263 2.235898 TGTTTGTTTGGGCTTCTGCTTT 59.764 40.909 0.00 0.00 39.59 3.51
263 264 1.830477 TGTTTGTTTGGGCTTCTGCTT 59.170 42.857 0.00 0.00 39.59 3.91
264 265 1.410153 CTGTTTGTTTGGGCTTCTGCT 59.590 47.619 0.00 0.00 39.59 4.24
265 266 1.538849 CCTGTTTGTTTGGGCTTCTGC 60.539 52.381 0.00 0.00 38.76 4.26
266 267 1.069049 CCCTGTTTGTTTGGGCTTCTG 59.931 52.381 0.00 0.00 33.88 3.02
267 268 1.413118 CCCTGTTTGTTTGGGCTTCT 58.587 50.000 0.00 0.00 33.88 2.85
268 269 3.986970 CCCTGTTTGTTTGGGCTTC 57.013 52.632 0.00 0.00 33.88 3.86
272 273 1.343142 GTAAGGCCCTGTTTGTTTGGG 59.657 52.381 0.00 0.00 43.62 4.12
273 274 2.035632 TGTAAGGCCCTGTTTGTTTGG 58.964 47.619 0.00 0.00 0.00 3.28
274 275 2.955660 TCTGTAAGGCCCTGTTTGTTTG 59.044 45.455 0.00 0.00 0.00 2.93
275 276 3.306472 TCTGTAAGGCCCTGTTTGTTT 57.694 42.857 0.00 0.00 0.00 2.83
276 277 3.306472 TTCTGTAAGGCCCTGTTTGTT 57.694 42.857 0.00 0.00 0.00 2.83
277 278 3.117663 TCTTTCTGTAAGGCCCTGTTTGT 60.118 43.478 0.00 0.00 34.46 2.83
278 279 3.486383 TCTTTCTGTAAGGCCCTGTTTG 58.514 45.455 0.00 0.00 34.46 2.93
279 280 3.138468 ACTCTTTCTGTAAGGCCCTGTTT 59.862 43.478 0.00 0.00 34.46 2.83
280 281 2.711547 ACTCTTTCTGTAAGGCCCTGTT 59.288 45.455 0.00 0.00 34.46 3.16
281 282 2.339769 ACTCTTTCTGTAAGGCCCTGT 58.660 47.619 0.00 0.00 34.46 4.00
282 283 3.260884 TGTACTCTTTCTGTAAGGCCCTG 59.739 47.826 0.00 0.00 34.46 4.45
283 284 3.517612 TGTACTCTTTCTGTAAGGCCCT 58.482 45.455 0.00 0.00 34.46 5.19
284 285 3.975168 TGTACTCTTTCTGTAAGGCCC 57.025 47.619 0.00 0.00 34.46 5.80
285 286 5.086104 TCATGTACTCTTTCTGTAAGGCC 57.914 43.478 0.00 0.00 34.46 5.19
286 287 6.595716 ACAATCATGTACTCTTTCTGTAAGGC 59.404 38.462 0.00 0.00 38.24 4.35
287 288 7.065085 CCACAATCATGTACTCTTTCTGTAAGG 59.935 40.741 0.00 0.00 37.82 2.69
288 289 7.604164 ACCACAATCATGTACTCTTTCTGTAAG 59.396 37.037 0.00 0.00 37.82 2.34
289 290 7.387673 CACCACAATCATGTACTCTTTCTGTAA 59.612 37.037 0.00 0.00 37.82 2.41
296 297 3.244875 TGCCACCACAATCATGTACTCTT 60.245 43.478 0.00 0.00 37.82 2.85
297 298 2.305635 TGCCACCACAATCATGTACTCT 59.694 45.455 0.00 0.00 37.82 3.24
301 302 3.966979 AGAATGCCACCACAATCATGTA 58.033 40.909 0.00 0.00 37.82 2.29
303 304 3.517602 CAAGAATGCCACCACAATCATG 58.482 45.455 0.00 0.00 0.00 3.07
323 324 6.318648 GTGGTTACTTCATTCCTGATATTGCA 59.681 38.462 0.00 0.00 0.00 4.08
340 341 7.011499 TGTATATGAGTTTGGTGTGGTTACT 57.989 36.000 0.00 0.00 0.00 2.24
377 381 1.927487 TCCATGCCAAGCTGACATTT 58.073 45.000 0.00 0.00 0.00 2.32
380 384 2.876581 CATCCATGCCAAGCTGACA 58.123 52.632 0.00 0.00 0.00 3.58
391 395 0.747644 TTGGCGTGGTAGCATCCATG 60.748 55.000 16.29 12.97 44.65 3.66
403 425 3.305964 CGAGTACATACCTATTGGCGTG 58.694 50.000 0.00 0.00 36.63 5.34
406 428 3.319972 TGTCCGAGTACATACCTATTGGC 59.680 47.826 0.00 0.00 36.63 4.52
407 429 5.010719 ACATGTCCGAGTACATACCTATTGG 59.989 44.000 0.00 0.00 38.01 3.16
408 430 6.016192 AGACATGTCCGAGTACATACCTATTG 60.016 42.308 22.21 0.00 38.01 1.90
438 466 0.611896 TCTCCACCGAGACATGCTGA 60.612 55.000 0.00 0.00 40.34 4.26
443 471 1.276421 CCTTGTTCTCCACCGAGACAT 59.724 52.381 0.00 0.00 45.01 3.06
474 502 4.025401 GCGAGGGCGTGTTTGGTG 62.025 66.667 0.00 0.00 40.36 4.17
484 512 2.202756 CCTAGTGAACGCGAGGGC 60.203 66.667 15.93 0.00 0.00 5.19
498 526 1.776662 AGCAATAGACTCCACGCCTA 58.223 50.000 0.00 0.00 0.00 3.93
512 540 4.814224 ACCATGGTAAAGGGATAGCAAT 57.186 40.909 18.10 0.00 36.90 3.56
519 547 5.795079 TCCTCTTATACCATGGTAAAGGGA 58.205 41.667 29.43 27.97 33.99 4.20
520 548 6.272324 TCATCCTCTTATACCATGGTAAAGGG 59.728 42.308 27.93 26.13 33.99 3.95
522 550 9.057089 GTTTCATCCTCTTATACCATGGTAAAG 57.943 37.037 27.93 26.39 33.99 1.85
541 941 4.749245 AGACAAACATGACGGTTTCATC 57.251 40.909 0.00 0.00 43.68 2.92
543 943 4.196193 AGAAGACAAACATGACGGTTTCA 58.804 39.130 0.00 0.00 38.86 2.69
544 944 4.813296 AGAAGACAAACATGACGGTTTC 57.187 40.909 0.00 0.00 38.86 2.78
545 945 5.365619 AGTAGAAGACAAACATGACGGTTT 58.634 37.500 0.00 0.00 41.44 3.27
547 947 4.281182 AGAGTAGAAGACAAACATGACGGT 59.719 41.667 0.00 0.00 0.00 4.83
548 948 4.810790 AGAGTAGAAGACAAACATGACGG 58.189 43.478 0.00 0.00 0.00 4.79
549 949 5.704888 AGAGAGTAGAAGACAAACATGACG 58.295 41.667 0.00 0.00 0.00 4.35
550 950 6.096695 GGAGAGAGTAGAAGACAAACATGAC 58.903 44.000 0.00 0.00 0.00 3.06
552 952 5.098893 CGGAGAGAGTAGAAGACAAACATG 58.901 45.833 0.00 0.00 0.00 3.21
554 954 4.142790 ACGGAGAGAGTAGAAGACAAACA 58.857 43.478 0.00 0.00 0.00 2.83
555 955 4.769859 ACGGAGAGAGTAGAAGACAAAC 57.230 45.455 0.00 0.00 0.00 2.93
568 996 6.424883 AGAGAAGTATTTAGGAACGGAGAGA 58.575 40.000 0.00 0.00 0.00 3.10
569 997 6.702716 AGAGAAGTATTTAGGAACGGAGAG 57.297 41.667 0.00 0.00 0.00 3.20
570 998 7.477945 AAAGAGAAGTATTTAGGAACGGAGA 57.522 36.000 0.00 0.00 0.00 3.71
571 999 8.549338 AAAAAGAGAAGTATTTAGGAACGGAG 57.451 34.615 0.00 0.00 0.00 4.63
572 1000 9.649167 CTAAAAAGAGAAGTATTTAGGAACGGA 57.351 33.333 0.00 0.00 33.69 4.69
573 1001 9.649167 TCTAAAAAGAGAAGTATTTAGGAACGG 57.351 33.333 0.00 0.00 36.48 4.44
597 1025 9.988815 GTATGTGGTACTTCATTTGATATCTCT 57.011 33.333 3.98 0.00 0.00 3.10
598 1026 8.916654 CGTATGTGGTACTTCATTTGATATCTC 58.083 37.037 3.98 0.00 0.00 2.75
599 1027 8.638873 TCGTATGTGGTACTTCATTTGATATCT 58.361 33.333 3.98 0.00 0.00 1.98
600 1028 8.812147 TCGTATGTGGTACTTCATTTGATATC 57.188 34.615 0.00 0.00 0.00 1.63
601 1029 9.607988 TTTCGTATGTGGTACTTCATTTGATAT 57.392 29.630 8.16 0.00 0.00 1.63
602 1030 9.093970 CTTTCGTATGTGGTACTTCATTTGATA 57.906 33.333 8.16 3.61 0.00 2.15
603 1031 7.606456 ACTTTCGTATGTGGTACTTCATTTGAT 59.394 33.333 8.16 0.00 0.00 2.57
604 1032 6.932400 ACTTTCGTATGTGGTACTTCATTTGA 59.068 34.615 8.16 5.27 0.00 2.69
605 1033 7.129109 ACTTTCGTATGTGGTACTTCATTTG 57.871 36.000 8.16 3.57 0.00 2.32
634 1062 9.277783 GTGAATACATAGGAGCAAAATGAGTAT 57.722 33.333 0.00 0.00 0.00 2.12
635 1063 8.486210 AGTGAATACATAGGAGCAAAATGAGTA 58.514 33.333 0.00 0.00 0.00 2.59
636 1064 7.341805 AGTGAATACATAGGAGCAAAATGAGT 58.658 34.615 0.00 0.00 0.00 3.41
637 1065 7.798596 AGTGAATACATAGGAGCAAAATGAG 57.201 36.000 0.00 0.00 0.00 2.90
638 1066 7.611467 ACAAGTGAATACATAGGAGCAAAATGA 59.389 33.333 0.00 0.00 0.00 2.57
639 1067 7.765307 ACAAGTGAATACATAGGAGCAAAATG 58.235 34.615 0.00 0.00 0.00 2.32
640 1068 7.944729 ACAAGTGAATACATAGGAGCAAAAT 57.055 32.000 0.00 0.00 0.00 1.82
641 1069 7.446931 TCAACAAGTGAATACATAGGAGCAAAA 59.553 33.333 0.00 0.00 31.51 2.44
642 1070 6.939730 TCAACAAGTGAATACATAGGAGCAAA 59.060 34.615 0.00 0.00 31.51 3.68
643 1071 6.472016 TCAACAAGTGAATACATAGGAGCAA 58.528 36.000 0.00 0.00 31.51 3.91
644 1072 6.048732 TCAACAAGTGAATACATAGGAGCA 57.951 37.500 0.00 0.00 31.51 4.26
645 1073 6.985188 TTCAACAAGTGAATACATAGGAGC 57.015 37.500 0.00 0.00 41.47 4.70
646 1074 9.388506 AGATTTCAACAAGTGAATACATAGGAG 57.611 33.333 0.00 0.00 45.71 3.69
647 1075 9.739276 AAGATTTCAACAAGTGAATACATAGGA 57.261 29.630 0.00 0.00 45.71 2.94
669 1097 9.769093 CGTTCCGAAATATGTCTTTTTAAAGAT 57.231 29.630 8.07 0.00 45.83 2.40
670 1098 8.231837 CCGTTCCGAAATATGTCTTTTTAAAGA 58.768 33.333 0.89 0.89 42.41 2.52
671 1099 8.231837 TCCGTTCCGAAATATGTCTTTTTAAAG 58.768 33.333 0.00 0.00 37.36 1.85
672 1100 8.097078 TCCGTTCCGAAATATGTCTTTTTAAA 57.903 30.769 0.00 0.00 0.00 1.52
673 1101 7.148373 CCTCCGTTCCGAAATATGTCTTTTTAA 60.148 37.037 0.00 0.00 0.00 1.52
674 1102 6.314400 CCTCCGTTCCGAAATATGTCTTTTTA 59.686 38.462 0.00 0.00 0.00 1.52
675 1103 5.123344 CCTCCGTTCCGAAATATGTCTTTTT 59.877 40.000 0.00 0.00 0.00 1.94
676 1104 4.634443 CCTCCGTTCCGAAATATGTCTTTT 59.366 41.667 0.00 0.00 0.00 2.27
677 1105 4.189231 CCTCCGTTCCGAAATATGTCTTT 58.811 43.478 0.00 0.00 0.00 2.52
678 1106 3.431766 CCCTCCGTTCCGAAATATGTCTT 60.432 47.826 0.00 0.00 0.00 3.01
679 1107 2.102588 CCCTCCGTTCCGAAATATGTCT 59.897 50.000 0.00 0.00 0.00 3.41
680 1108 2.101917 TCCCTCCGTTCCGAAATATGTC 59.898 50.000 0.00 0.00 0.00 3.06
681 1109 2.102588 CTCCCTCCGTTCCGAAATATGT 59.897 50.000 0.00 0.00 0.00 2.29
682 1110 2.755650 CTCCCTCCGTTCCGAAATATG 58.244 52.381 0.00 0.00 0.00 1.78
683 1111 1.070289 GCTCCCTCCGTTCCGAAATAT 59.930 52.381 0.00 0.00 0.00 1.28
684 1112 0.462789 GCTCCCTCCGTTCCGAAATA 59.537 55.000 0.00 0.00 0.00 1.40
685 1113 1.221021 GCTCCCTCCGTTCCGAAAT 59.779 57.895 0.00 0.00 0.00 2.17
686 1114 2.211410 TGCTCCCTCCGTTCCGAAA 61.211 57.895 0.00 0.00 0.00 3.46
687 1115 2.602267 TGCTCCCTCCGTTCCGAA 60.602 61.111 0.00 0.00 0.00 4.30
688 1116 3.379445 GTGCTCCCTCCGTTCCGA 61.379 66.667 0.00 0.00 0.00 4.55
689 1117 2.725203 TTTGTGCTCCCTCCGTTCCG 62.725 60.000 0.00 0.00 0.00 4.30
690 1118 0.955919 CTTTGTGCTCCCTCCGTTCC 60.956 60.000 0.00 0.00 0.00 3.62
691 1119 0.034896 TCTTTGTGCTCCCTCCGTTC 59.965 55.000 0.00 0.00 0.00 3.95
692 1120 0.693049 ATCTTTGTGCTCCCTCCGTT 59.307 50.000 0.00 0.00 0.00 4.44
693 1121 1.568504 TATCTTTGTGCTCCCTCCGT 58.431 50.000 0.00 0.00 0.00 4.69
694 1122 2.487934 CATATCTTTGTGCTCCCTCCG 58.512 52.381 0.00 0.00 0.00 4.63
695 1123 2.173569 ACCATATCTTTGTGCTCCCTCC 59.826 50.000 0.00 0.00 0.00 4.30
696 1124 3.567478 ACCATATCTTTGTGCTCCCTC 57.433 47.619 0.00 0.00 0.00 4.30
697 1125 5.103940 ACATAACCATATCTTTGTGCTCCCT 60.104 40.000 0.00 0.00 0.00 4.20
698 1126 5.133221 ACATAACCATATCTTTGTGCTCCC 58.867 41.667 0.00 0.00 0.00 4.30
699 1127 6.699575 AACATAACCATATCTTTGTGCTCC 57.300 37.500 0.00 0.00 0.00 4.70
700 1128 8.863049 CAAAAACATAACCATATCTTTGTGCTC 58.137 33.333 0.00 0.00 0.00 4.26
863 2433 3.436001 CGACTCCGGTATGCAAAGT 57.564 52.632 0.00 0.00 0.00 2.66
874 2444 4.505922 CAGTAGTACTACTTACCGACTCCG 59.494 50.000 29.08 12.70 43.35 4.63
972 2554 1.227263 CGGCGATCGAATGGGAGTT 60.227 57.895 21.57 0.00 42.43 3.01
1058 2648 4.873129 CGGGACACGCAGGATCGG 62.873 72.222 0.00 0.00 34.82 4.18
1218 2811 0.453390 GCTTGGCGATTTTGGAGGAG 59.547 55.000 0.00 0.00 0.00 3.69
2007 3600 3.181526 CTTGGACCTCCATGCCTTC 57.818 57.895 0.00 0.00 46.97 3.46
2013 3606 2.285368 TCCGGCTTGGACCTCCAT 60.285 61.111 0.00 0.00 46.97 3.41
2163 3756 2.358369 TCGCAGACTCGGACGACT 60.358 61.111 0.00 0.00 0.00 4.18
2232 3825 0.326264 GGGTCCTGAGTGACATTGCT 59.674 55.000 4.03 0.00 36.97 3.91
2241 3834 4.250170 ACACCGGGGGTCCTGAGT 62.250 66.667 9.50 0.00 31.02 3.41
2271 3864 3.644399 GACCTCGCCGGACTTGTCC 62.644 68.421 5.05 9.62 36.31 4.02
2275 3868 2.282958 TCTGACCTCGCCGGACTT 60.283 61.111 5.05 0.00 36.31 3.01
2276 3869 2.752238 CTCTGACCTCGCCGGACT 60.752 66.667 5.05 0.00 36.31 3.85
2384 3983 3.751518 ACGAACTCACTGGCCTAAAATT 58.248 40.909 3.32 0.00 0.00 1.82
2388 3987 2.522185 AGTACGAACTCACTGGCCTAA 58.478 47.619 3.32 0.00 0.00 2.69
2401 4014 4.521130 ACTGATTGCTCTGAAGTACGAA 57.479 40.909 0.00 0.00 0.00 3.85
2402 4015 4.096532 CCTACTGATTGCTCTGAAGTACGA 59.903 45.833 0.00 0.00 0.00 3.43
2403 4016 4.096532 TCCTACTGATTGCTCTGAAGTACG 59.903 45.833 0.00 0.00 0.00 3.67
2404 4017 5.584253 TCCTACTGATTGCTCTGAAGTAC 57.416 43.478 0.00 0.00 0.00 2.73
2405 4018 6.609212 AGAATCCTACTGATTGCTCTGAAGTA 59.391 38.462 0.00 0.00 43.81 2.24
2406 4019 5.424895 AGAATCCTACTGATTGCTCTGAAGT 59.575 40.000 0.00 0.00 43.81 3.01
2407 4020 5.916318 AGAATCCTACTGATTGCTCTGAAG 58.084 41.667 0.00 0.00 43.81 3.02
2408 4021 5.946942 AGAATCCTACTGATTGCTCTGAA 57.053 39.130 0.00 0.00 43.81 3.02
2409 4022 6.040278 CACTAGAATCCTACTGATTGCTCTGA 59.960 42.308 0.00 0.00 43.81 3.27
2410 4023 6.215121 CACTAGAATCCTACTGATTGCTCTG 58.785 44.000 0.00 0.00 43.81 3.35
2411 4024 5.221422 GCACTAGAATCCTACTGATTGCTCT 60.221 44.000 0.00 0.00 43.81 4.09
2412 4025 4.987912 GCACTAGAATCCTACTGATTGCTC 59.012 45.833 0.00 0.00 43.81 4.26
2413 4026 4.406972 TGCACTAGAATCCTACTGATTGCT 59.593 41.667 0.00 0.00 43.81 3.91
2414 4027 4.697514 TGCACTAGAATCCTACTGATTGC 58.302 43.478 0.00 0.00 43.81 3.56
2428 4045 7.120579 CCACTGGTATTTTTACATTGCACTAGA 59.879 37.037 0.00 0.00 0.00 2.43
2430 4047 6.717540 ACCACTGGTATTTTTACATTGCACTA 59.282 34.615 0.00 0.00 32.11 2.74
2444 4061 7.924358 TCCATACTGTATAACCACTGGTATT 57.076 36.000 0.00 0.00 33.12 1.89
2592 4234 4.645535 TGTGCTTCTTTGAGATTGTAGCT 58.354 39.130 0.00 0.00 28.53 3.32
2608 4250 0.798776 GCAGAACGCTGTATGTGCTT 59.201 50.000 0.00 0.00 44.17 3.91
2622 4264 2.101249 CCAGGTTTTTCTTGCTGCAGAA 59.899 45.455 20.43 2.96 0.00 3.02
2973 4628 1.352622 ACCCAGGAACACCTCAAGCA 61.353 55.000 0.00 0.00 30.75 3.91
3001 4656 5.092554 TCTCATGCGGTTTGGTTCTATTA 57.907 39.130 0.00 0.00 0.00 0.98
3002 4657 3.950397 TCTCATGCGGTTTGGTTCTATT 58.050 40.909 0.00 0.00 0.00 1.73
3003 4658 3.627395 TCTCATGCGGTTTGGTTCTAT 57.373 42.857 0.00 0.00 0.00 1.98
3004 4659 3.410631 TTCTCATGCGGTTTGGTTCTA 57.589 42.857 0.00 0.00 0.00 2.10
3005 4660 2.270352 TTCTCATGCGGTTTGGTTCT 57.730 45.000 0.00 0.00 0.00 3.01
3006 4661 3.363341 TTTTCTCATGCGGTTTGGTTC 57.637 42.857 0.00 0.00 0.00 3.62
3007 4662 3.320541 TCATTTTCTCATGCGGTTTGGTT 59.679 39.130 0.00 0.00 0.00 3.67
3008 4663 2.890311 TCATTTTCTCATGCGGTTTGGT 59.110 40.909 0.00 0.00 0.00 3.67
3009 4664 3.574284 TCATTTTCTCATGCGGTTTGG 57.426 42.857 0.00 0.00 0.00 3.28
3010 4665 6.122850 TCTATCATTTTCTCATGCGGTTTG 57.877 37.500 0.00 0.00 0.00 2.93
3011 4666 6.404734 GGTTCTATCATTTTCTCATGCGGTTT 60.405 38.462 0.00 0.00 0.00 3.27
3012 4667 5.066505 GGTTCTATCATTTTCTCATGCGGTT 59.933 40.000 0.00 0.00 0.00 4.44
3013 4668 4.576463 GGTTCTATCATTTTCTCATGCGGT 59.424 41.667 0.00 0.00 0.00 5.68
3014 4669 4.576053 TGGTTCTATCATTTTCTCATGCGG 59.424 41.667 0.00 0.00 0.00 5.69
3015 4670 5.739752 TGGTTCTATCATTTTCTCATGCG 57.260 39.130 0.00 0.00 0.00 4.73
3016 4671 6.753744 GGTTTGGTTCTATCATTTTCTCATGC 59.246 38.462 0.00 0.00 0.00 4.06
3017 4672 6.968904 CGGTTTGGTTCTATCATTTTCTCATG 59.031 38.462 0.00 0.00 0.00 3.07
3018 4673 6.404734 GCGGTTTGGTTCTATCATTTTCTCAT 60.405 38.462 0.00 0.00 0.00 2.90
3019 4674 5.106317 GCGGTTTGGTTCTATCATTTTCTCA 60.106 40.000 0.00 0.00 0.00 3.27
3020 4675 5.106317 TGCGGTTTGGTTCTATCATTTTCTC 60.106 40.000 0.00 0.00 0.00 2.87
3021 4676 4.764823 TGCGGTTTGGTTCTATCATTTTCT 59.235 37.500 0.00 0.00 0.00 2.52
3022 4677 5.054390 TGCGGTTTGGTTCTATCATTTTC 57.946 39.130 0.00 0.00 0.00 2.29
3023 4678 5.184864 TCATGCGGTTTGGTTCTATCATTTT 59.815 36.000 0.00 0.00 0.00 1.82
3024 4679 4.704540 TCATGCGGTTTGGTTCTATCATTT 59.295 37.500 0.00 0.00 0.00 2.32
3025 4680 4.269183 TCATGCGGTTTGGTTCTATCATT 58.731 39.130 0.00 0.00 0.00 2.57
3026 4681 3.879295 CTCATGCGGTTTGGTTCTATCAT 59.121 43.478 0.00 0.00 0.00 2.45
3027 4682 3.055458 TCTCATGCGGTTTGGTTCTATCA 60.055 43.478 0.00 0.00 0.00 2.15
3028 4683 3.531538 TCTCATGCGGTTTGGTTCTATC 58.468 45.455 0.00 0.00 0.00 2.08
3029 4684 3.627395 TCTCATGCGGTTTGGTTCTAT 57.373 42.857 0.00 0.00 0.00 1.98
3030 4685 3.410631 TTCTCATGCGGTTTGGTTCTA 57.589 42.857 0.00 0.00 0.00 2.10
3031 4686 2.270352 TTCTCATGCGGTTTGGTTCT 57.730 45.000 0.00 0.00 0.00 3.01
3032 4687 3.363341 TTTTCTCATGCGGTTTGGTTC 57.637 42.857 0.00 0.00 0.00 3.62
3033 4688 3.320541 TCATTTTCTCATGCGGTTTGGTT 59.679 39.130 0.00 0.00 0.00 3.67
3034 4689 2.890311 TCATTTTCTCATGCGGTTTGGT 59.110 40.909 0.00 0.00 0.00 3.67
3035 4690 3.574284 TCATTTTCTCATGCGGTTTGG 57.426 42.857 0.00 0.00 0.00 3.28
3036 4691 4.487948 ACATCATTTTCTCATGCGGTTTG 58.512 39.130 0.00 0.00 0.00 2.93
3037 4692 4.789012 ACATCATTTTCTCATGCGGTTT 57.211 36.364 0.00 0.00 0.00 3.27
3042 4697 4.906065 TGGCTACATCATTTTCTCATGC 57.094 40.909 0.00 0.00 0.00 4.06
3060 4715 5.186198 TCTCTTAACTATTGGAGCTTTGGC 58.814 41.667 0.00 0.00 39.06 4.52
3124 4786 1.609932 GACTCATTTGTGCATGTGCG 58.390 50.000 0.00 0.00 45.83 5.34
3125 4787 1.270274 TGGACTCATTTGTGCATGTGC 59.730 47.619 0.00 0.00 42.50 4.57
3126 4788 2.293955 TGTGGACTCATTTGTGCATGTG 59.706 45.455 0.00 0.00 40.21 3.21
3127 4789 2.585330 TGTGGACTCATTTGTGCATGT 58.415 42.857 0.00 0.00 40.21 3.21
3156 4821 9.039165 ACATTGGAAGGATGTTTCAAGATTTAT 57.961 29.630 0.00 0.00 34.18 1.40
3157 4822 8.306038 CACATTGGAAGGATGTTTCAAGATTTA 58.694 33.333 0.00 0.00 35.64 1.40
3158 4823 7.156673 CACATTGGAAGGATGTTTCAAGATTT 58.843 34.615 0.00 0.00 35.64 2.17
3165 4830 2.562298 TGGCACATTGGAAGGATGTTTC 59.438 45.455 0.00 0.00 35.64 2.78
3194 4859 2.769095 AGTGTCTTAAGGAGGGATGAGC 59.231 50.000 1.85 0.00 0.00 4.26
3200 4865 6.049955 TGTATTCAAGTGTCTTAAGGAGGG 57.950 41.667 1.85 0.00 0.00 4.30
3208 4873 7.147976 GCATTTTTCCTGTATTCAAGTGTCTT 58.852 34.615 0.00 0.00 0.00 3.01
3209 4874 6.265196 TGCATTTTTCCTGTATTCAAGTGTCT 59.735 34.615 0.00 0.00 0.00 3.41
3222 4887 3.048337 ACCTGCATTGCATTTTTCCTG 57.952 42.857 12.53 0.00 38.13 3.86
3223 4888 3.577848 TGTACCTGCATTGCATTTTTCCT 59.422 39.130 12.53 0.00 38.13 3.36
3224 4889 3.924144 TGTACCTGCATTGCATTTTTCC 58.076 40.909 12.53 0.00 38.13 3.13
3227 4894 4.333913 TGTTGTACCTGCATTGCATTTT 57.666 36.364 12.53 2.04 38.13 1.82
3231 4898 4.015764 ACATATGTTGTACCTGCATTGCA 58.984 39.130 11.50 11.50 36.57 4.08
3283 4950 2.941064 GCATGCATCTCTTGTTAGCTCA 59.059 45.455 14.21 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.