Multiple sequence alignment - TraesCS4B01G310200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G310200 chr4B 100.000 3396 0 0 1 3396 600607162 600603767 0.000000e+00 6272.0
1 TraesCS4B01G310200 chr4B 95.742 2043 69 7 782 2808 600517990 600515950 0.000000e+00 3275.0
2 TraesCS4B01G310200 chr4B 95.967 843 23 7 1639 2475 600599336 600598499 0.000000e+00 1358.0
3 TraesCS4B01G310200 chr4B 93.447 351 22 1 3047 3396 600515958 600515608 1.400000e-143 520.0
4 TraesCS4B01G310200 chr4B 79.545 484 57 24 1 476 519373585 519374034 1.180000e-79 307.0
5 TraesCS4B01G310200 chr4B 89.216 102 9 2 592 692 449229786 449229886 3.560000e-25 126.0
6 TraesCS4B01G310200 chr4B 82.474 97 13 4 606 698 49070069 49069973 7.810000e-12 82.4
7 TraesCS4B01G310200 chr4B 95.122 41 2 0 1072 1112 600606058 600606018 7.870000e-07 65.8
8 TraesCS4B01G310200 chr4D 94.255 1793 52 16 885 2649 476229826 476228057 0.000000e+00 2693.0
9 TraesCS4B01G310200 chr4D 94.148 581 34 0 1 581 476231273 476230693 0.000000e+00 885.0
10 TraesCS4B01G310200 chr4D 94.340 106 3 3 783 887 476229960 476229857 3.510000e-35 159.0
11 TraesCS4B01G310200 chr4A 89.277 2061 120 49 800 2808 683443441 683441430 0.000000e+00 2488.0
12 TraesCS4B01G310200 chr4A 85.345 232 32 2 351 581 41947619 41947389 4.380000e-59 239.0
13 TraesCS4B01G310200 chr2B 81.493 1313 192 35 1110 2397 24905696 24906982 0.000000e+00 1031.0
14 TraesCS4B01G310200 chr2B 80.970 1340 186 51 1110 2404 24889254 24890569 0.000000e+00 998.0
15 TraesCS4B01G310200 chr2B 80.920 1326 198 38 1110 2396 24882778 24884087 0.000000e+00 996.0
16 TraesCS4B01G310200 chr2B 93.478 92 4 2 693 783 30521660 30521750 5.910000e-28 135.0
17 TraesCS4B01G310200 chr2B 93.478 92 4 2 693 783 784303804 784303894 5.910000e-28 135.0
18 TraesCS4B01G310200 chr2B 84.211 76 7 5 2707 2778 770032327 770032253 6.080000e-08 69.4
19 TraesCS4B01G310200 chr2A 80.758 1320 193 42 1120 2396 15906134 15904833 0.000000e+00 974.0
20 TraesCS4B01G310200 chr2A 81.382 854 121 24 1581 2403 15642268 15643114 0.000000e+00 662.0
21 TraesCS4B01G310200 chr2A 87.500 384 42 5 1116 1499 15641779 15642156 4.020000e-119 438.0
22 TraesCS4B01G310200 chr2A 82.294 401 66 3 1110 1510 14892708 14892313 3.240000e-90 342.0
23 TraesCS4B01G310200 chr3D 88.014 584 67 1 1 581 366808089 366807506 0.000000e+00 688.0
24 TraesCS4B01G310200 chr3D 88.480 408 43 2 178 581 545178307 545177900 1.100000e-134 490.0
25 TraesCS4B01G310200 chr3D 94.118 238 12 1 2807 3042 583664519 583664756 8.960000e-96 361.0
26 TraesCS4B01G310200 chr3D 93.697 238 13 1 2807 3042 583710036 583710273 4.170000e-94 355.0
27 TraesCS4B01G310200 chr2D 80.539 853 130 24 1581 2403 13632964 13633810 1.030000e-174 623.0
28 TraesCS4B01G310200 chr7D 89.315 496 50 1 2 494 535900246 535900741 1.340000e-173 619.0
29 TraesCS4B01G310200 chr7D 75.000 1300 249 47 1123 2385 63378302 63377042 6.450000e-147 531.0
30 TraesCS4B01G310200 chr7D 100.000 30 0 0 3367 3396 630507957 630507928 4.730000e-04 56.5
31 TraesCS4B01G310200 chr7A 76.370 821 155 25 1574 2384 66166809 66166018 4.080000e-109 405.0
32 TraesCS4B01G310200 chr7A 94.505 91 3 2 693 782 97406903 97406814 4.570000e-29 139.0
33 TraesCS4B01G310200 chr7A 84.211 95 11 4 606 698 157202488 157202396 4.670000e-14 89.8
34 TraesCS4B01G310200 chr7A 86.420 81 10 1 614 694 300856432 300856511 1.680000e-13 87.9
35 TraesCS4B01G310200 chr7A 84.884 86 9 4 611 694 569613901 569613984 2.170000e-12 84.2
36 TraesCS4B01G310200 chr7A 86.207 58 6 2 2626 2681 529328116 529328173 1.020000e-05 62.1
37 TraesCS4B01G310200 chr3B 93.462 260 12 5 2797 3053 391567694 391567437 6.880000e-102 381.0
38 TraesCS4B01G310200 chr3B 92.490 253 14 4 2804 3052 499722686 499722937 1.160000e-94 357.0
39 TraesCS4B01G310200 chr3B 92.095 253 15 5 2804 3052 510052241 510052492 5.390000e-93 351.0
40 TraesCS4B01G310200 chr3B 92.000 250 15 5 2807 3052 504311427 504311179 2.510000e-91 346.0
41 TraesCS4B01G310200 chr1B 93.089 246 14 3 2802 3044 334234531 334234286 1.160000e-94 357.0
42 TraesCS4B01G310200 chr1B 81.696 224 35 6 2590 2808 77624301 77624523 7.490000e-42 182.0
43 TraesCS4B01G310200 chr7B 92.400 250 14 4 2807 3052 497079024 497078776 5.390000e-93 351.0
44 TraesCS4B01G310200 chr7B 91.440 257 16 2 2798 3052 638419923 638420175 6.970000e-92 348.0
45 TraesCS4B01G310200 chr7B 87.179 78 10 0 700 777 28064103 28064026 4.670000e-14 89.8
46 TraesCS4B01G310200 chr7B 85.366 82 9 3 617 697 74597331 74597252 7.810000e-12 82.4
47 TraesCS4B01G310200 chrUn 83.792 327 50 2 1110 1436 18084747 18085070 1.180000e-79 307.0
48 TraesCS4B01G310200 chrUn 90.769 65 6 0 633 697 87128492 87128428 1.680000e-13 87.9
49 TraesCS4B01G310200 chr6D 80.995 221 39 3 2590 2808 428065838 428065619 4.510000e-39 172.0
50 TraesCS4B01G310200 chr1D 81.905 210 30 8 2600 2804 52325477 52325683 1.620000e-38 171.0
51 TraesCS4B01G310200 chr1D 95.652 92 2 2 693 783 66387716 66387626 2.730000e-31 147.0
52 TraesCS4B01G310200 chr3A 95.604 91 2 2 693 782 701941102 701941191 9.820000e-31 145.0
53 TraesCS4B01G310200 chr6B 92.308 91 5 2 693 782 125540429 125540518 9.890000e-26 128.0
54 TraesCS4B01G310200 chr6B 76.190 168 24 11 2623 2785 45904963 45905119 1.310000e-09 75.0
55 TraesCS4B01G310200 chr6B 79.787 94 12 7 606 694 353569772 353569863 1.020000e-05 62.1
56 TraesCS4B01G310200 chr1A 93.103 87 6 0 696 782 551669891 551669805 9.890000e-26 128.0
57 TraesCS4B01G310200 chr1A 84.884 86 12 1 693 777 54510618 54510533 6.040000e-13 86.1
58 TraesCS4B01G310200 chr5A 86.420 81 10 1 614 694 684651974 684652053 1.680000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G310200 chr4B 600603767 600607162 3395 True 3168.900000 6272 97.561000 1 3396 2 chr4B.!!$R4 3395
1 TraesCS4B01G310200 chr4B 600515608 600517990 2382 True 1897.500000 3275 94.594500 782 3396 2 chr4B.!!$R3 2614
2 TraesCS4B01G310200 chr4B 600598499 600599336 837 True 1358.000000 1358 95.967000 1639 2475 1 chr4B.!!$R2 836
3 TraesCS4B01G310200 chr4D 476228057 476231273 3216 True 1245.666667 2693 94.247667 1 2649 3 chr4D.!!$R1 2648
4 TraesCS4B01G310200 chr4A 683441430 683443441 2011 True 2488.000000 2488 89.277000 800 2808 1 chr4A.!!$R2 2008
5 TraesCS4B01G310200 chr2B 24905696 24906982 1286 False 1031.000000 1031 81.493000 1110 2397 1 chr2B.!!$F3 1287
6 TraesCS4B01G310200 chr2B 24889254 24890569 1315 False 998.000000 998 80.970000 1110 2404 1 chr2B.!!$F2 1294
7 TraesCS4B01G310200 chr2B 24882778 24884087 1309 False 996.000000 996 80.920000 1110 2396 1 chr2B.!!$F1 1286
8 TraesCS4B01G310200 chr2A 15904833 15906134 1301 True 974.000000 974 80.758000 1120 2396 1 chr2A.!!$R2 1276
9 TraesCS4B01G310200 chr2A 15641779 15643114 1335 False 550.000000 662 84.441000 1116 2403 2 chr2A.!!$F1 1287
10 TraesCS4B01G310200 chr3D 366807506 366808089 583 True 688.000000 688 88.014000 1 581 1 chr3D.!!$R1 580
11 TraesCS4B01G310200 chr2D 13632964 13633810 846 False 623.000000 623 80.539000 1581 2403 1 chr2D.!!$F1 822
12 TraesCS4B01G310200 chr7D 63377042 63378302 1260 True 531.000000 531 75.000000 1123 2385 1 chr7D.!!$R1 1262
13 TraesCS4B01G310200 chr7A 66166018 66166809 791 True 405.000000 405 76.370000 1574 2384 1 chr7A.!!$R1 810

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
584 588 0.105964 CCAGCAGCCTCCTCCTAGTA 60.106 60.0 0.00 0.0 0.00 1.82 F
720 724 0.179468 AAACTACAGTGTGCGGTGGT 59.821 50.0 5.88 0.0 36.24 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2386 3097 1.286849 TCCTCCCTCGATCAGTTGGTA 59.713 52.381 0.0 0.0 0.0 3.25 R
2619 3365 0.525761 AACCAATTCCCGCATGTTCG 59.474 50.000 0.0 0.0 0.0 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.000819 CACCCCCTGCACCGACTA 61.001 66.667 0.00 0.00 0.00 2.59
62 63 7.406104 ACTAAATACTGGCTGGATTTTCTTCT 58.594 34.615 18.16 0.00 0.00 2.85
87 88 2.063979 CCGTGCACCTCCATCCCTA 61.064 63.158 12.15 0.00 0.00 3.53
128 129 1.754380 CGTCCAGGTTGACCACTCCA 61.754 60.000 2.56 0.00 38.89 3.86
152 153 2.356313 CAGCAGCACTTCGTCGGT 60.356 61.111 0.00 0.00 0.00 4.69
224 225 0.466555 CCGACAAACCAAACCTCCCA 60.467 55.000 0.00 0.00 0.00 4.37
302 306 0.751643 AACAGCCGTCAAGCCAACTT 60.752 50.000 0.00 0.00 36.19 2.66
383 387 1.605058 CCTCCATCTTCCACGACCGT 61.605 60.000 0.00 0.00 0.00 4.83
436 440 2.359230 GACGAAGCAGGCTTGGCT 60.359 61.111 11.85 1.43 45.15 4.75
557 561 4.070552 GCCGCGACCAACTCTCCT 62.071 66.667 8.23 0.00 0.00 3.69
564 568 1.882989 GACCAACTCTCCTGCGAGCT 61.883 60.000 0.00 0.00 35.94 4.09
581 585 1.075674 CTCCAGCAGCCTCCTCCTA 60.076 63.158 0.00 0.00 0.00 2.94
582 586 1.075674 TCCAGCAGCCTCCTCCTAG 60.076 63.158 0.00 0.00 0.00 3.02
583 587 1.382420 CCAGCAGCCTCCTCCTAGT 60.382 63.158 0.00 0.00 0.00 2.57
584 588 0.105964 CCAGCAGCCTCCTCCTAGTA 60.106 60.000 0.00 0.00 0.00 1.82
585 589 1.689575 CCAGCAGCCTCCTCCTAGTAA 60.690 57.143 0.00 0.00 0.00 2.24
586 590 2.111384 CAGCAGCCTCCTCCTAGTAAA 58.889 52.381 0.00 0.00 0.00 2.01
587 591 2.102252 CAGCAGCCTCCTCCTAGTAAAG 59.898 54.545 0.00 0.00 0.00 1.85
588 592 1.202592 GCAGCCTCCTCCTAGTAAAGC 60.203 57.143 0.00 0.00 0.00 3.51
589 593 2.393646 CAGCCTCCTCCTAGTAAAGCT 58.606 52.381 0.00 0.00 0.00 3.74
590 594 2.769095 CAGCCTCCTCCTAGTAAAGCTT 59.231 50.000 0.00 0.00 0.00 3.74
593 597 3.055021 GCCTCCTCCTAGTAAAGCTTTGT 60.055 47.826 22.02 11.15 0.00 2.83
595 599 5.561679 CCTCCTCCTAGTAAAGCTTTGTTT 58.438 41.667 22.02 9.23 0.00 2.83
596 600 5.412904 CCTCCTCCTAGTAAAGCTTTGTTTG 59.587 44.000 22.02 9.96 0.00 2.93
597 601 5.937111 TCCTCCTAGTAAAGCTTTGTTTGT 58.063 37.500 22.02 4.16 0.00 2.83
598 602 5.995897 TCCTCCTAGTAAAGCTTTGTTTGTC 59.004 40.000 22.02 5.33 0.00 3.18
601 605 4.514066 CCTAGTAAAGCTTTGTTTGTCCGT 59.486 41.667 22.02 0.00 0.00 4.69
602 606 5.697633 CCTAGTAAAGCTTTGTTTGTCCGTA 59.302 40.000 22.02 0.00 0.00 4.02
603 607 6.370718 CCTAGTAAAGCTTTGTTTGTCCGTAT 59.629 38.462 22.02 0.00 0.00 3.06
604 608 6.237313 AGTAAAGCTTTGTTTGTCCGTATC 57.763 37.500 22.02 0.00 0.00 2.24
605 609 5.761234 AGTAAAGCTTTGTTTGTCCGTATCA 59.239 36.000 22.02 0.00 0.00 2.15
606 610 5.508200 AAAGCTTTGTTTGTCCGTATCAA 57.492 34.783 11.80 0.00 0.00 2.57
608 612 5.108385 AGCTTTGTTTGTCCGTATCAAAG 57.892 39.130 10.35 10.35 44.09 2.77
609 613 4.578928 AGCTTTGTTTGTCCGTATCAAAGT 59.421 37.500 14.38 3.09 43.55 2.66
611 615 6.430000 AGCTTTGTTTGTCCGTATCAAAGTAT 59.570 34.615 14.38 4.73 43.55 2.12
612 616 7.604927 AGCTTTGTTTGTCCGTATCAAAGTATA 59.395 33.333 14.38 0.00 43.55 1.47
613 617 8.231837 GCTTTGTTTGTCCGTATCAAAGTATAA 58.768 33.333 14.38 0.00 43.55 0.98
667 671 9.899226 AAAAAGTTCATAGTAAAGCTTGACATC 57.101 29.630 16.54 0.38 0.00 3.06
668 672 8.621532 AAAGTTCATAGTAAAGCTTGACATCA 57.378 30.769 16.54 1.26 0.00 3.07
669 673 7.602517 AGTTCATAGTAAAGCTTGACATCAC 57.397 36.000 16.54 5.40 0.00 3.06
670 674 7.161404 AGTTCATAGTAAAGCTTGACATCACA 58.839 34.615 16.54 0.00 0.00 3.58
671 675 7.661437 AGTTCATAGTAAAGCTTGACATCACAA 59.339 33.333 16.54 0.00 0.00 3.33
672 676 7.601073 TCATAGTAAAGCTTGACATCACAAG 57.399 36.000 16.54 0.00 46.69 3.16
673 677 6.595326 TCATAGTAAAGCTTGACATCACAAGG 59.405 38.462 16.54 0.00 44.87 3.61
679 683 4.305989 GCTTGACATCACAAGGTTTTGA 57.694 40.909 0.00 0.00 44.87 2.69
680 684 4.874970 GCTTGACATCACAAGGTTTTGAT 58.125 39.130 0.00 0.00 44.87 2.57
682 686 5.452078 TTGACATCACAAGGTTTTGATCC 57.548 39.130 0.00 0.00 37.73 3.36
684 688 4.520111 TGACATCACAAGGTTTTGATCCTG 59.480 41.667 0.00 0.00 37.73 3.86
686 690 2.238521 TCACAAGGTTTTGATCCTGGC 58.761 47.619 0.00 0.00 37.73 4.85
687 691 1.962807 CACAAGGTTTTGATCCTGGCA 59.037 47.619 0.00 0.00 37.73 4.92
688 692 1.963515 ACAAGGTTTTGATCCTGGCAC 59.036 47.619 0.00 0.00 37.73 5.01
690 694 0.609131 AGGTTTTGATCCTGGCACCG 60.609 55.000 0.00 0.00 33.62 4.94
705 709 2.021457 GCACCGCCATTGGTATAAACT 58.979 47.619 4.26 0.00 41.38 2.66
706 710 3.207778 GCACCGCCATTGGTATAAACTA 58.792 45.455 4.26 0.00 41.38 2.24
709 713 4.272504 CACCGCCATTGGTATAAACTACAG 59.727 45.833 4.26 0.00 41.38 2.74
710 714 4.080751 ACCGCCATTGGTATAAACTACAGT 60.081 41.667 4.26 0.00 41.55 3.55
711 715 4.272504 CCGCCATTGGTATAAACTACAGTG 59.727 45.833 4.26 0.00 0.00 3.66
713 717 5.220586 CGCCATTGGTATAAACTACAGTGTG 60.221 44.000 5.88 0.00 0.00 3.82
714 718 5.448632 GCCATTGGTATAAACTACAGTGTGC 60.449 44.000 5.88 0.00 0.00 4.57
717 721 3.258872 TGGTATAAACTACAGTGTGCGGT 59.741 43.478 5.88 0.00 0.00 5.68
719 723 2.157834 TAAACTACAGTGTGCGGTGG 57.842 50.000 5.88 0.00 0.00 4.61
720 724 0.179468 AAACTACAGTGTGCGGTGGT 59.821 50.000 5.88 0.00 36.24 4.16
721 725 0.531974 AACTACAGTGTGCGGTGGTG 60.532 55.000 5.88 0.00 35.11 4.17
730 734 4.760047 GCGGTGGTGCGAGGTGAT 62.760 66.667 0.00 0.00 0.00 3.06
731 735 2.047274 CGGTGGTGCGAGGTGATT 60.047 61.111 0.00 0.00 0.00 2.57
732 736 2.390599 CGGTGGTGCGAGGTGATTG 61.391 63.158 0.00 0.00 0.00 2.67
733 737 2.040544 GGTGGTGCGAGGTGATTGG 61.041 63.158 0.00 0.00 0.00 3.16
734 738 2.359850 TGGTGCGAGGTGATTGGC 60.360 61.111 0.00 0.00 0.00 4.52
735 739 2.045926 GGTGCGAGGTGATTGGCT 60.046 61.111 0.00 0.00 0.00 4.75
736 740 2.401766 GGTGCGAGGTGATTGGCTG 61.402 63.158 0.00 0.00 0.00 4.85
738 742 2.268920 GCGAGGTGATTGGCTGGA 59.731 61.111 0.00 0.00 0.00 3.86
740 744 1.817099 CGAGGTGATTGGCTGGAGC 60.817 63.158 0.00 0.00 41.14 4.70
741 745 1.606531 GAGGTGATTGGCTGGAGCT 59.393 57.895 0.00 0.00 41.70 4.09
742 746 0.747283 GAGGTGATTGGCTGGAGCTG 60.747 60.000 0.00 0.00 41.70 4.24
743 747 1.001641 GGTGATTGGCTGGAGCTGT 60.002 57.895 0.00 0.00 41.70 4.40
745 749 1.676635 TGATTGGCTGGAGCTGTGC 60.677 57.895 0.00 0.00 41.70 4.57
746 750 2.362120 ATTGGCTGGAGCTGTGCC 60.362 61.111 12.69 12.69 46.26 5.01
750 754 4.082523 GCTGGAGCTGTGCCGGTA 62.083 66.667 1.90 0.00 38.21 4.02
751 755 2.185350 CTGGAGCTGTGCCGGTAG 59.815 66.667 1.90 0.14 0.00 3.18
752 756 4.082523 TGGAGCTGTGCCGGTAGC 62.083 66.667 16.47 16.47 44.14 3.58
755 759 3.775654 AGCTGTGCCGGTAGCTCC 61.776 66.667 19.76 0.00 46.76 4.70
756 760 4.840005 GCTGTGCCGGTAGCTCCC 62.840 72.222 16.79 0.00 44.23 4.30
833 1368 3.495806 CCTTCACCTTCTGCAACTTCTCT 60.496 47.826 0.00 0.00 0.00 3.10
834 1369 3.393089 TCACCTTCTGCAACTTCTCTC 57.607 47.619 0.00 0.00 0.00 3.20
835 1370 2.700371 TCACCTTCTGCAACTTCTCTCA 59.300 45.455 0.00 0.00 0.00 3.27
836 1371 3.065655 CACCTTCTGCAACTTCTCTCAG 58.934 50.000 0.00 0.00 0.00 3.35
837 1372 2.075338 CCTTCTGCAACTTCTCTCAGC 58.925 52.381 0.00 0.00 0.00 4.26
839 1374 2.452295 TCTGCAACTTCTCTCAGCTG 57.548 50.000 7.63 7.63 0.00 4.24
840 1375 0.797542 CTGCAACTTCTCTCAGCTGC 59.202 55.000 9.47 0.00 0.00 5.25
842 1377 1.233019 GCAACTTCTCTCAGCTGCAA 58.767 50.000 9.47 0.00 0.00 4.08
939 1519 4.066646 GGCAACCCACATTGTAGTTTTT 57.933 40.909 2.51 0.00 31.83 1.94
2386 3097 1.296715 GCACGTCCTTGATCCCACT 59.703 57.895 0.00 0.00 0.00 4.00
2533 3275 1.199097 CGATGACCGGGAAACTTTTGG 59.801 52.381 6.32 0.00 33.91 3.28
2567 3311 5.158101 TGCATTGCACAAAACAAAGATTG 57.842 34.783 7.38 0.00 31.71 2.67
2571 3315 7.388224 TGCATTGCACAAAACAAAGATTGATAT 59.612 29.630 7.38 0.00 31.71 1.63
2586 3330 6.465948 AGATTGATATGACTCTGCCTTCATC 58.534 40.000 0.00 0.00 34.28 2.92
2587 3331 5.883685 TTGATATGACTCTGCCTTCATCT 57.116 39.130 0.00 0.00 34.28 2.90
2588 3332 6.983906 TTGATATGACTCTGCCTTCATCTA 57.016 37.500 0.00 0.00 34.28 1.98
2650 3396 6.040955 TGCGGGAATTGGTTGCAATATATTAA 59.959 34.615 0.59 0.00 31.69 1.40
2685 3432 8.592105 TTTGCTTGTCTTGAATTTAAAGATGG 57.408 30.769 0.00 0.00 36.14 3.51
2790 3538 8.506437 CATGCATGTTGAGAGAAGTAAAAGTAA 58.494 33.333 18.91 0.00 0.00 2.24
2824 3572 9.635404 AATAAAATGGTAATGATAACTCCCGAA 57.365 29.630 0.00 0.00 0.00 4.30
2825 3573 6.937436 AAATGGTAATGATAACTCCCGAAC 57.063 37.500 0.00 0.00 0.00 3.95
2826 3574 5.623956 ATGGTAATGATAACTCCCGAACA 57.376 39.130 0.00 0.00 0.00 3.18
2827 3575 5.623956 TGGTAATGATAACTCCCGAACAT 57.376 39.130 0.00 0.00 0.00 2.71
2828 3576 5.996644 TGGTAATGATAACTCCCGAACATT 58.003 37.500 0.00 0.00 33.56 2.71
2829 3577 6.053005 TGGTAATGATAACTCCCGAACATTC 58.947 40.000 0.00 0.00 31.85 2.67
2841 3589 2.343101 CGAACATTCGGGAGTTAAGCA 58.657 47.619 6.11 0.00 46.30 3.91
2842 3590 2.936498 CGAACATTCGGGAGTTAAGCAT 59.064 45.455 6.11 0.00 46.30 3.79
2843 3591 3.242413 CGAACATTCGGGAGTTAAGCATG 60.242 47.826 6.11 0.00 46.30 4.06
2844 3592 2.643551 ACATTCGGGAGTTAAGCATGG 58.356 47.619 0.00 0.00 0.00 3.66
2845 3593 1.334869 CATTCGGGAGTTAAGCATGGC 59.665 52.381 0.00 0.00 0.00 4.40
2846 3594 0.326595 TTCGGGAGTTAAGCATGGCA 59.673 50.000 0.00 0.00 0.00 4.92
2847 3595 0.326595 TCGGGAGTTAAGCATGGCAA 59.673 50.000 0.00 0.00 0.00 4.52
2848 3596 0.451783 CGGGAGTTAAGCATGGCAAC 59.548 55.000 0.00 0.00 0.00 4.17
2849 3597 0.817654 GGGAGTTAAGCATGGCAACC 59.182 55.000 0.00 0.00 0.00 3.77
2850 3598 0.817654 GGAGTTAAGCATGGCAACCC 59.182 55.000 0.00 0.00 0.00 4.11
2851 3599 0.451783 GAGTTAAGCATGGCAACCCG 59.548 55.000 0.00 0.00 0.00 5.28
2852 3600 0.037590 AGTTAAGCATGGCAACCCGA 59.962 50.000 0.00 0.00 0.00 5.14
2853 3601 0.885196 GTTAAGCATGGCAACCCGAA 59.115 50.000 0.00 0.00 0.00 4.30
2854 3602 0.885196 TTAAGCATGGCAACCCGAAC 59.115 50.000 0.00 0.00 0.00 3.95
2855 3603 1.302383 TAAGCATGGCAACCCGAACG 61.302 55.000 0.00 0.00 0.00 3.95
2856 3604 4.776647 GCATGGCAACCCGAACGC 62.777 66.667 0.00 0.00 0.00 4.84
2857 3605 3.055719 CATGGCAACCCGAACGCT 61.056 61.111 0.00 0.00 0.00 5.07
2858 3606 3.055719 ATGGCAACCCGAACGCTG 61.056 61.111 0.00 0.00 0.00 5.18
2859 3607 3.842925 ATGGCAACCCGAACGCTGT 62.843 57.895 0.00 0.00 0.00 4.40
2860 3608 3.284449 GGCAACCCGAACGCTGTT 61.284 61.111 0.00 0.00 0.00 3.16
2861 3609 1.962306 GGCAACCCGAACGCTGTTA 60.962 57.895 0.00 0.00 0.00 2.41
2862 3610 1.495951 GCAACCCGAACGCTGTTAG 59.504 57.895 0.00 0.00 0.00 2.34
2863 3611 0.947180 GCAACCCGAACGCTGTTAGA 60.947 55.000 3.86 0.00 0.00 2.10
2864 3612 1.722011 CAACCCGAACGCTGTTAGAT 58.278 50.000 3.86 0.00 0.00 1.98
2865 3613 1.393539 CAACCCGAACGCTGTTAGATG 59.606 52.381 3.86 0.00 0.00 2.90
2866 3614 0.108329 ACCCGAACGCTGTTAGATGG 60.108 55.000 3.86 0.00 0.00 3.51
2867 3615 0.108329 CCCGAACGCTGTTAGATGGT 60.108 55.000 3.86 0.00 0.00 3.55
2868 3616 1.135527 CCCGAACGCTGTTAGATGGTA 59.864 52.381 3.86 0.00 0.00 3.25
2869 3617 2.417651 CCCGAACGCTGTTAGATGGTAA 60.418 50.000 3.86 0.00 0.00 2.85
2870 3618 2.601763 CCGAACGCTGTTAGATGGTAAC 59.398 50.000 3.86 0.00 0.00 2.50
2871 3619 3.508762 CGAACGCTGTTAGATGGTAACT 58.491 45.455 0.00 0.00 37.61 2.24
2872 3620 3.924686 CGAACGCTGTTAGATGGTAACTT 59.075 43.478 0.00 0.00 37.61 2.66
2873 3621 4.387862 CGAACGCTGTTAGATGGTAACTTT 59.612 41.667 0.00 0.00 37.61 2.66
2874 3622 5.574055 CGAACGCTGTTAGATGGTAACTTTA 59.426 40.000 0.00 0.00 37.61 1.85
2875 3623 6.237490 CGAACGCTGTTAGATGGTAACTTTAG 60.237 42.308 0.00 0.00 37.61 1.85
2876 3624 6.034161 ACGCTGTTAGATGGTAACTTTAGT 57.966 37.500 0.00 0.00 37.61 2.24
2877 3625 6.461640 ACGCTGTTAGATGGTAACTTTAGTT 58.538 36.000 0.29 0.29 41.73 2.24
2878 3626 6.932960 ACGCTGTTAGATGGTAACTTTAGTTT 59.067 34.615 0.00 0.00 39.31 2.66
2879 3627 7.095355 ACGCTGTTAGATGGTAACTTTAGTTTG 60.095 37.037 0.00 0.00 39.31 2.93
2880 3628 7.021790 GCTGTTAGATGGTAACTTTAGTTTGC 58.978 38.462 0.00 0.00 39.31 3.68
2881 3629 7.124347 TGTTAGATGGTAACTTTAGTTTGCG 57.876 36.000 0.00 0.00 39.31 4.85
2882 3630 6.707161 TGTTAGATGGTAACTTTAGTTTGCGT 59.293 34.615 0.00 0.00 39.31 5.24
2883 3631 5.607119 AGATGGTAACTTTAGTTTGCGTG 57.393 39.130 0.00 0.00 39.31 5.34
2884 3632 5.302360 AGATGGTAACTTTAGTTTGCGTGA 58.698 37.500 0.00 0.00 39.31 4.35
2885 3633 5.408604 AGATGGTAACTTTAGTTTGCGTGAG 59.591 40.000 0.00 0.00 39.31 3.51
2886 3634 4.695396 TGGTAACTTTAGTTTGCGTGAGA 58.305 39.130 0.00 0.00 39.31 3.27
2887 3635 5.302360 TGGTAACTTTAGTTTGCGTGAGAT 58.698 37.500 0.00 0.00 39.31 2.75
2888 3636 5.761234 TGGTAACTTTAGTTTGCGTGAGATT 59.239 36.000 0.00 0.00 39.31 2.40
2889 3637 6.930164 TGGTAACTTTAGTTTGCGTGAGATTA 59.070 34.615 0.00 0.00 39.31 1.75
2890 3638 7.117236 TGGTAACTTTAGTTTGCGTGAGATTAG 59.883 37.037 0.00 0.00 39.31 1.73
2891 3639 6.481954 AACTTTAGTTTGCGTGAGATTAGG 57.518 37.500 0.00 0.00 33.93 2.69
2892 3640 5.790593 ACTTTAGTTTGCGTGAGATTAGGA 58.209 37.500 0.00 0.00 0.00 2.94
2893 3641 6.228258 ACTTTAGTTTGCGTGAGATTAGGAA 58.772 36.000 0.00 0.00 0.00 3.36
2894 3642 6.708949 ACTTTAGTTTGCGTGAGATTAGGAAA 59.291 34.615 0.00 0.00 0.00 3.13
2895 3643 7.227910 ACTTTAGTTTGCGTGAGATTAGGAAAA 59.772 33.333 0.00 0.00 0.00 2.29
2896 3644 5.358298 AGTTTGCGTGAGATTAGGAAAAC 57.642 39.130 0.00 0.00 35.30 2.43
2897 3645 4.819630 AGTTTGCGTGAGATTAGGAAAACA 59.180 37.500 0.00 0.00 36.75 2.83
2898 3646 5.473504 AGTTTGCGTGAGATTAGGAAAACAT 59.526 36.000 0.00 0.00 36.75 2.71
2899 3647 4.944962 TGCGTGAGATTAGGAAAACATG 57.055 40.909 0.00 0.00 0.00 3.21
2900 3648 3.689161 TGCGTGAGATTAGGAAAACATGG 59.311 43.478 0.00 0.00 0.00 3.66
2901 3649 3.487544 GCGTGAGATTAGGAAAACATGGC 60.488 47.826 0.00 0.00 0.00 4.40
2902 3650 3.689161 CGTGAGATTAGGAAAACATGGCA 59.311 43.478 0.00 0.00 0.00 4.92
2903 3651 4.155826 CGTGAGATTAGGAAAACATGGCAA 59.844 41.667 0.00 0.00 0.00 4.52
2904 3652 5.163622 CGTGAGATTAGGAAAACATGGCAAT 60.164 40.000 0.00 0.00 0.00 3.56
2905 3653 6.625740 CGTGAGATTAGGAAAACATGGCAATT 60.626 38.462 0.00 0.00 0.00 2.32
2906 3654 7.099120 GTGAGATTAGGAAAACATGGCAATTT 58.901 34.615 0.00 0.00 0.00 1.82
2907 3655 7.603784 GTGAGATTAGGAAAACATGGCAATTTT 59.396 33.333 11.36 11.36 0.00 1.82
2908 3656 7.818930 TGAGATTAGGAAAACATGGCAATTTTC 59.181 33.333 22.55 22.55 41.87 2.29
2909 3657 7.910584 AGATTAGGAAAACATGGCAATTTTCT 58.089 30.769 26.35 18.45 42.13 2.52
2910 3658 7.820872 AGATTAGGAAAACATGGCAATTTTCTG 59.179 33.333 26.35 10.16 42.13 3.02
2911 3659 5.549742 AGGAAAACATGGCAATTTTCTGA 57.450 34.783 26.35 0.00 42.13 3.27
2912 3660 6.117975 AGGAAAACATGGCAATTTTCTGAT 57.882 33.333 26.35 16.57 42.13 2.90
2913 3661 7.243604 AGGAAAACATGGCAATTTTCTGATA 57.756 32.000 26.35 0.00 42.13 2.15
2914 3662 7.678837 AGGAAAACATGGCAATTTTCTGATAA 58.321 30.769 26.35 0.00 42.13 1.75
2915 3663 8.156165 AGGAAAACATGGCAATTTTCTGATAAA 58.844 29.630 26.35 0.00 42.13 1.40
2916 3664 8.782144 GGAAAACATGGCAATTTTCTGATAAAA 58.218 29.630 26.35 0.00 42.13 1.52
2918 3666 9.949174 AAAACATGGCAATTTTCTGATAAAAAC 57.051 25.926 6.94 0.00 31.35 2.43
2919 3667 7.350110 ACATGGCAATTTTCTGATAAAAACG 57.650 32.000 0.00 0.00 31.35 3.60
2920 3668 7.151308 ACATGGCAATTTTCTGATAAAAACGA 58.849 30.769 0.00 0.00 31.35 3.85
2921 3669 7.655328 ACATGGCAATTTTCTGATAAAAACGAA 59.345 29.630 0.00 0.00 31.35 3.85
2922 3670 8.494347 CATGGCAATTTTCTGATAAAAACGAAA 58.506 29.630 0.00 0.00 31.35 3.46
2923 3671 8.425577 TGGCAATTTTCTGATAAAAACGAAAA 57.574 26.923 0.00 0.00 39.01 2.29
2924 3672 8.883731 TGGCAATTTTCTGATAAAAACGAAAAA 58.116 25.926 0.00 0.00 38.41 1.94
2925 3673 9.368921 GGCAATTTTCTGATAAAAACGAAAAAG 57.631 29.630 0.00 0.00 38.41 2.27
2926 3674 9.368921 GCAATTTTCTGATAAAAACGAAAAAGG 57.631 29.630 0.00 0.00 38.41 3.11
2939 3687 9.607988 AAAAACGAAAAAGGATAAAGTTTCCAT 57.392 25.926 0.00 0.00 35.59 3.41
2940 3688 8.812147 AAACGAAAAAGGATAAAGTTTCCATC 57.188 30.769 0.00 0.00 35.59 3.51
2941 3689 6.920817 ACGAAAAAGGATAAAGTTTCCATCC 58.079 36.000 8.76 8.76 38.85 3.51
2942 3690 6.071560 ACGAAAAAGGATAAAGTTTCCATCCC 60.072 38.462 12.09 0.37 39.29 3.85
2943 3691 6.620877 AAAAAGGATAAAGTTTCCATCCCC 57.379 37.500 12.09 0.00 39.29 4.81
2944 3692 5.552430 AAAGGATAAAGTTTCCATCCCCT 57.448 39.130 12.09 0.59 39.29 4.79
2945 3693 6.668133 AAAGGATAAAGTTTCCATCCCCTA 57.332 37.500 12.09 0.00 39.29 3.53
2946 3694 6.865651 AAGGATAAAGTTTCCATCCCCTAT 57.134 37.500 12.09 0.00 39.29 2.57
2947 3695 6.455690 AGGATAAAGTTTCCATCCCCTATC 57.544 41.667 12.09 0.00 39.29 2.08
2948 3696 5.917087 AGGATAAAGTTTCCATCCCCTATCA 59.083 40.000 12.09 0.00 39.29 2.15
2949 3697 6.392842 AGGATAAAGTTTCCATCCCCTATCAA 59.607 38.462 12.09 0.00 39.29 2.57
2950 3698 6.490381 GGATAAAGTTTCCATCCCCTATCAAC 59.510 42.308 6.23 0.00 33.47 3.18
2951 3699 5.536497 AAAGTTTCCATCCCCTATCAACT 57.464 39.130 0.00 0.00 0.00 3.16
2952 3700 6.652205 AAAGTTTCCATCCCCTATCAACTA 57.348 37.500 0.00 0.00 0.00 2.24
2953 3701 6.652205 AAGTTTCCATCCCCTATCAACTAA 57.348 37.500 0.00 0.00 0.00 2.24
2954 3702 6.652205 AGTTTCCATCCCCTATCAACTAAA 57.348 37.500 0.00 0.00 0.00 1.85
2955 3703 6.663734 AGTTTCCATCCCCTATCAACTAAAG 58.336 40.000 0.00 0.00 0.00 1.85
2956 3704 6.217693 AGTTTCCATCCCCTATCAACTAAAGT 59.782 38.462 0.00 0.00 0.00 2.66
2957 3705 6.652205 TTCCATCCCCTATCAACTAAAGTT 57.348 37.500 0.00 0.00 39.12 2.66
2969 3717 3.646736 ACTAAAGTTGCCATCCCCTAC 57.353 47.619 0.00 0.00 0.00 3.18
2970 3718 2.093128 ACTAAAGTTGCCATCCCCTACG 60.093 50.000 0.00 0.00 0.00 3.51
2971 3719 0.988832 AAAGTTGCCATCCCCTACGA 59.011 50.000 0.00 0.00 0.00 3.43
2972 3720 0.988832 AAGTTGCCATCCCCTACGAA 59.011 50.000 0.00 0.00 0.00 3.85
2973 3721 0.252197 AGTTGCCATCCCCTACGAAC 59.748 55.000 0.00 0.00 0.00 3.95
2974 3722 0.252197 GTTGCCATCCCCTACGAACT 59.748 55.000 0.00 0.00 0.00 3.01
2975 3723 1.483415 GTTGCCATCCCCTACGAACTA 59.517 52.381 0.00 0.00 0.00 2.24
2976 3724 1.868713 TGCCATCCCCTACGAACTAA 58.131 50.000 0.00 0.00 0.00 2.24
2977 3725 2.189676 TGCCATCCCCTACGAACTAAA 58.810 47.619 0.00 0.00 0.00 1.85
2978 3726 2.169769 TGCCATCCCCTACGAACTAAAG 59.830 50.000 0.00 0.00 0.00 1.85
2979 3727 2.169978 GCCATCCCCTACGAACTAAAGT 59.830 50.000 0.00 0.00 0.00 2.66
2980 3728 3.370209 GCCATCCCCTACGAACTAAAGTT 60.370 47.826 0.00 0.00 41.64 2.66
2981 3729 4.189231 CCATCCCCTACGAACTAAAGTTG 58.811 47.826 0.00 0.00 38.56 3.16
2982 3730 3.323751 TCCCCTACGAACTAAAGTTGC 57.676 47.619 0.00 0.00 38.56 4.17
2983 3731 2.027837 TCCCCTACGAACTAAAGTTGCC 60.028 50.000 0.00 0.00 38.56 4.52
2984 3732 2.289819 CCCCTACGAACTAAAGTTGCCA 60.290 50.000 0.00 0.00 38.56 4.92
2985 3733 3.606687 CCCTACGAACTAAAGTTGCCAT 58.393 45.455 0.00 0.00 38.56 4.40
2986 3734 3.374058 CCCTACGAACTAAAGTTGCCATG 59.626 47.826 0.00 0.00 38.56 3.66
2987 3735 4.000988 CCTACGAACTAAAGTTGCCATGT 58.999 43.478 0.00 0.00 38.56 3.21
2988 3736 4.092968 CCTACGAACTAAAGTTGCCATGTC 59.907 45.833 0.00 0.00 38.56 3.06
2989 3737 3.472652 ACGAACTAAAGTTGCCATGTCA 58.527 40.909 0.00 0.00 38.56 3.58
2990 3738 3.880490 ACGAACTAAAGTTGCCATGTCAA 59.120 39.130 0.00 0.00 38.56 3.18
2991 3739 4.336993 ACGAACTAAAGTTGCCATGTCAAA 59.663 37.500 0.00 0.00 38.56 2.69
2992 3740 5.163602 ACGAACTAAAGTTGCCATGTCAAAA 60.164 36.000 0.00 0.00 38.56 2.44
2993 3741 5.173131 CGAACTAAAGTTGCCATGTCAAAAC 59.827 40.000 0.00 0.00 38.56 2.43
2994 3742 5.852282 ACTAAAGTTGCCATGTCAAAACT 57.148 34.783 0.00 0.00 34.40 2.66
2995 3743 6.220726 ACTAAAGTTGCCATGTCAAAACTT 57.779 33.333 0.00 0.00 42.97 2.66
2997 3745 6.756542 ACTAAAGTTGCCATGTCAAAACTTTC 59.243 34.615 19.63 0.00 45.15 2.62
2998 3746 4.734398 AGTTGCCATGTCAAAACTTTCA 57.266 36.364 0.00 0.00 28.57 2.69
2999 3747 5.280654 AGTTGCCATGTCAAAACTTTCAT 57.719 34.783 0.00 0.00 28.57 2.57
3000 3748 5.051816 AGTTGCCATGTCAAAACTTTCATG 58.948 37.500 0.00 0.00 37.83 3.07
3001 3749 4.933505 TGCCATGTCAAAACTTTCATGA 57.066 36.364 0.00 0.00 39.68 3.07
3002 3750 4.619973 TGCCATGTCAAAACTTTCATGAC 58.380 39.130 0.00 0.00 42.90 3.06
3003 3751 3.670055 GCCATGTCAAAACTTTCATGACG 59.330 43.478 0.00 0.00 44.95 4.35
3004 3752 4.556501 GCCATGTCAAAACTTTCATGACGA 60.557 41.667 0.00 0.00 44.95 4.20
3005 3753 5.518812 CCATGTCAAAACTTTCATGACGAA 58.481 37.500 0.00 0.00 44.95 3.85
3006 3754 5.399301 CCATGTCAAAACTTTCATGACGAAC 59.601 40.000 0.00 0.00 44.95 3.95
3007 3755 5.811399 TGTCAAAACTTTCATGACGAACT 57.189 34.783 0.00 0.00 44.95 3.01
3008 3756 5.568482 TGTCAAAACTTTCATGACGAACTG 58.432 37.500 0.00 0.00 44.95 3.16
3009 3757 4.437820 GTCAAAACTTTCATGACGAACTGC 59.562 41.667 0.00 0.00 34.72 4.40
3010 3758 4.335315 TCAAAACTTTCATGACGAACTGCT 59.665 37.500 0.00 0.00 31.73 4.24
3011 3759 4.474226 AAACTTTCATGACGAACTGCTC 57.526 40.909 0.00 0.00 31.73 4.26
3012 3760 3.111853 ACTTTCATGACGAACTGCTCA 57.888 42.857 0.00 0.00 31.73 4.26
3013 3761 3.466836 ACTTTCATGACGAACTGCTCAA 58.533 40.909 0.00 0.00 31.73 3.02
3014 3762 3.876914 ACTTTCATGACGAACTGCTCAAA 59.123 39.130 0.00 0.00 31.73 2.69
3015 3763 4.516698 ACTTTCATGACGAACTGCTCAAAT 59.483 37.500 0.00 0.00 31.73 2.32
3016 3764 4.668576 TTCATGACGAACTGCTCAAATC 57.331 40.909 0.00 0.00 0.00 2.17
3017 3765 3.002791 TCATGACGAACTGCTCAAATCC 58.997 45.455 0.00 0.00 0.00 3.01
3018 3766 2.839486 TGACGAACTGCTCAAATCCT 57.161 45.000 0.00 0.00 0.00 3.24
3019 3767 2.416747 TGACGAACTGCTCAAATCCTG 58.583 47.619 0.00 0.00 0.00 3.86
3020 3768 2.037121 TGACGAACTGCTCAAATCCTGA 59.963 45.455 0.00 0.00 0.00 3.86
3021 3769 3.067106 GACGAACTGCTCAAATCCTGAA 58.933 45.455 0.00 0.00 32.17 3.02
3022 3770 2.808543 ACGAACTGCTCAAATCCTGAAC 59.191 45.455 0.00 0.00 32.17 3.18
3023 3771 2.159787 CGAACTGCTCAAATCCTGAACG 60.160 50.000 0.00 0.00 32.17 3.95
3024 3772 2.550830 ACTGCTCAAATCCTGAACGT 57.449 45.000 0.00 0.00 32.17 3.99
3025 3773 2.851195 ACTGCTCAAATCCTGAACGTT 58.149 42.857 0.00 0.00 32.17 3.99
3026 3774 2.808543 ACTGCTCAAATCCTGAACGTTC 59.191 45.455 21.42 21.42 32.17 3.95
3027 3775 1.798223 TGCTCAAATCCTGAACGTTCG 59.202 47.619 22.48 16.45 32.17 3.95
3028 3776 1.128692 GCTCAAATCCTGAACGTTCGG 59.871 52.381 26.94 26.94 32.17 4.30
3037 3785 3.991605 CTGAACGTTCGGGAGTTATTG 57.008 47.619 26.35 2.66 0.00 1.90
3038 3786 2.671396 CTGAACGTTCGGGAGTTATTGG 59.329 50.000 26.35 1.29 0.00 3.16
3039 3787 2.299582 TGAACGTTCGGGAGTTATTGGA 59.700 45.455 22.48 0.00 0.00 3.53
3040 3788 3.055675 TGAACGTTCGGGAGTTATTGGAT 60.056 43.478 22.48 0.00 0.00 3.41
3041 3789 3.622166 ACGTTCGGGAGTTATTGGATT 57.378 42.857 0.00 0.00 0.00 3.01
3042 3790 3.528532 ACGTTCGGGAGTTATTGGATTC 58.471 45.455 0.00 0.00 0.00 2.52
3043 3791 2.870411 CGTTCGGGAGTTATTGGATTCC 59.130 50.000 0.00 0.00 0.00 3.01
3044 3792 3.431766 CGTTCGGGAGTTATTGGATTCCT 60.432 47.826 3.95 0.00 0.00 3.36
3045 3793 4.202182 CGTTCGGGAGTTATTGGATTCCTA 60.202 45.833 3.95 0.00 0.00 2.94
3046 3794 5.677567 GTTCGGGAGTTATTGGATTCCTAA 58.322 41.667 3.95 0.00 0.00 2.69
3047 3795 6.296803 GTTCGGGAGTTATTGGATTCCTAAT 58.703 40.000 3.95 5.16 0.00 1.73
3048 3796 7.447594 GTTCGGGAGTTATTGGATTCCTAATA 58.552 38.462 3.95 4.26 0.00 0.98
3049 3797 7.621006 TCGGGAGTTATTGGATTCCTAATAA 57.379 36.000 3.95 9.49 0.00 1.40
3050 3798 8.036585 TCGGGAGTTATTGGATTCCTAATAAA 57.963 34.615 15.72 0.17 32.39 1.40
3051 3799 8.496088 TCGGGAGTTATTGGATTCCTAATAAAA 58.504 33.333 15.72 0.00 32.39 1.52
3052 3800 9.297037 CGGGAGTTATTGGATTCCTAATAAAAT 57.703 33.333 15.72 10.87 32.39 1.82
3071 3819 1.536940 TGGGATGTGTGCATGTTGAG 58.463 50.000 0.00 0.00 35.07 3.02
3073 3821 2.291089 TGGGATGTGTGCATGTTGAGAT 60.291 45.455 0.00 0.00 35.07 2.75
3074 3822 2.756760 GGGATGTGTGCATGTTGAGATT 59.243 45.455 0.00 0.00 35.07 2.40
3111 3859 5.435291 AGAGGTGAAAGAATTCATAGGCAG 58.565 41.667 8.44 0.00 46.67 4.85
3168 3916 2.158623 AGTGAAGTTCATGAGGTGGCAA 60.159 45.455 9.18 0.00 0.00 4.52
3224 3972 9.088512 GGCGATCAACTAAGTATATAGGATTTG 57.911 37.037 0.00 0.00 0.00 2.32
3257 4006 5.333513 AGTTGCATTGCACAAAACAAATTG 58.666 33.333 11.66 0.00 38.71 2.32
3266 4015 4.727448 GCACAAAACAAATTGGTGCAACTC 60.727 41.667 16.35 0.00 37.32 3.01
3282 4031 9.710900 TGGTGCAACTCTATTATAGACATAATG 57.289 33.333 2.04 0.00 36.13 1.90
3360 4109 5.955959 ACATTGTTAAACCTTTCCCCTATCC 59.044 40.000 0.00 0.00 0.00 2.59
3363 4112 4.357399 TGTTAAACCTTTCCCCTATCCCAA 59.643 41.667 0.00 0.00 0.00 4.12
3389 4138 4.490266 GGGAGAGCCTTCTTCCCT 57.510 61.111 1.55 0.00 42.61 4.20
3392 4141 0.176910 GGAGAGCCTTCTTCCCTTCG 59.823 60.000 0.00 0.00 32.53 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.205460 ATTTAGTCGGTGCAGGGGGT 61.205 55.000 0.00 0.00 0.00 4.95
40 41 6.248433 TCAGAAGAAAATCCAGCCAGTATTT 58.752 36.000 0.00 0.00 0.00 1.40
62 63 1.971167 GGAGGTGCACGGCAATTCA 60.971 57.895 11.45 0.00 41.47 2.57
152 153 1.287815 CCACGACAACTCGGCTACA 59.712 57.895 0.00 0.00 44.80 2.74
162 163 2.732016 CTCGGTGGACCACGACAA 59.268 61.111 18.40 2.94 34.83 3.18
183 184 1.473258 TGTTTTGCTTCTGCCTGTGT 58.527 45.000 0.00 0.00 38.71 3.72
282 286 0.751643 AGTTGGCTTGACGGCTGTTT 60.752 50.000 0.00 0.00 39.32 2.83
331 335 1.056125 TGGATGTGCCCGATCTGGAT 61.056 55.000 7.45 0.00 42.00 3.41
564 568 1.075674 CTAGGAGGAGGCTGCTGGA 60.076 63.158 15.18 0.00 0.00 3.86
581 585 5.761234 TGATACGGACAAACAAAGCTTTACT 59.239 36.000 12.25 0.00 0.00 2.24
582 586 5.992729 TGATACGGACAAACAAAGCTTTAC 58.007 37.500 12.25 0.00 0.00 2.01
583 587 6.621316 TTGATACGGACAAACAAAGCTTTA 57.379 33.333 12.25 0.00 0.00 1.85
584 588 5.508200 TTGATACGGACAAACAAAGCTTT 57.492 34.783 5.69 5.69 0.00 3.51
585 589 5.067283 ACTTTGATACGGACAAACAAAGCTT 59.933 36.000 14.84 0.00 46.05 3.74
586 590 4.578928 ACTTTGATACGGACAAACAAAGCT 59.421 37.500 14.84 0.00 46.05 3.74
587 591 4.855531 ACTTTGATACGGACAAACAAAGC 58.144 39.130 14.84 0.00 46.05 3.51
641 645 9.899226 GATGTCAAGCTTTACTATGAACTTTTT 57.101 29.630 11.84 0.00 0.00 1.94
642 646 9.066892 TGATGTCAAGCTTTACTATGAACTTTT 57.933 29.630 11.84 0.00 0.00 2.27
643 647 8.507249 GTGATGTCAAGCTTTACTATGAACTTT 58.493 33.333 11.84 0.00 0.00 2.66
644 648 7.661437 TGTGATGTCAAGCTTTACTATGAACTT 59.339 33.333 11.84 0.00 0.00 2.66
645 649 7.161404 TGTGATGTCAAGCTTTACTATGAACT 58.839 34.615 11.84 0.00 0.00 3.01
646 650 7.364522 TGTGATGTCAAGCTTTACTATGAAC 57.635 36.000 11.84 4.62 0.00 3.18
647 651 7.119699 CCTTGTGATGTCAAGCTTTACTATGAA 59.880 37.037 11.84 0.00 42.16 2.57
648 652 6.595326 CCTTGTGATGTCAAGCTTTACTATGA 59.405 38.462 11.84 0.00 42.16 2.15
649 653 6.372659 ACCTTGTGATGTCAAGCTTTACTATG 59.627 38.462 11.84 0.00 42.16 2.23
651 655 5.865085 ACCTTGTGATGTCAAGCTTTACTA 58.135 37.500 11.84 0.00 42.16 1.82
652 656 4.718961 ACCTTGTGATGTCAAGCTTTACT 58.281 39.130 11.84 0.00 42.16 2.24
654 658 6.096141 TCAAAACCTTGTGATGTCAAGCTTTA 59.904 34.615 0.00 0.00 42.16 1.85
655 659 5.105392 TCAAAACCTTGTGATGTCAAGCTTT 60.105 36.000 0.00 0.00 42.16 3.51
656 660 4.402155 TCAAAACCTTGTGATGTCAAGCTT 59.598 37.500 0.00 0.00 42.16 3.74
657 661 3.953612 TCAAAACCTTGTGATGTCAAGCT 59.046 39.130 0.00 0.00 42.16 3.74
658 662 4.305989 TCAAAACCTTGTGATGTCAAGC 57.694 40.909 0.00 0.00 42.16 4.01
659 663 5.242393 AGGATCAAAACCTTGTGATGTCAAG 59.758 40.000 0.00 0.00 42.86 3.02
660 664 5.009911 CAGGATCAAAACCTTGTGATGTCAA 59.990 40.000 0.00 0.00 34.61 3.18
662 666 4.082571 CCAGGATCAAAACCTTGTGATGTC 60.083 45.833 0.00 0.00 34.61 3.06
663 667 3.828451 CCAGGATCAAAACCTTGTGATGT 59.172 43.478 0.00 0.00 34.61 3.06
665 669 2.827921 GCCAGGATCAAAACCTTGTGAT 59.172 45.455 0.00 0.00 37.19 3.06
666 670 2.238521 GCCAGGATCAAAACCTTGTGA 58.761 47.619 0.00 0.00 35.35 3.58
667 671 1.962807 TGCCAGGATCAAAACCTTGTG 59.037 47.619 0.00 0.00 35.35 3.33
668 672 1.963515 GTGCCAGGATCAAAACCTTGT 59.036 47.619 0.00 0.00 35.35 3.16
669 673 1.273327 GGTGCCAGGATCAAAACCTTG 59.727 52.381 0.00 0.00 35.35 3.61
670 674 1.632589 GGTGCCAGGATCAAAACCTT 58.367 50.000 0.00 0.00 35.35 3.50
671 675 0.609131 CGGTGCCAGGATCAAAACCT 60.609 55.000 0.00 0.00 38.40 3.50
672 676 1.883021 CGGTGCCAGGATCAAAACC 59.117 57.895 0.00 0.00 0.00 3.27
673 677 1.212751 GCGGTGCCAGGATCAAAAC 59.787 57.895 0.00 0.00 0.00 2.43
674 678 3.680156 GCGGTGCCAGGATCAAAA 58.320 55.556 0.00 0.00 0.00 2.44
686 690 4.193090 TGTAGTTTATACCAATGGCGGTG 58.807 43.478 0.00 0.00 40.39 4.94
687 691 4.080751 ACTGTAGTTTATACCAATGGCGGT 60.081 41.667 0.00 0.00 43.46 5.68
688 692 4.272504 CACTGTAGTTTATACCAATGGCGG 59.727 45.833 0.00 0.00 0.00 6.13
690 694 5.448632 GCACACTGTAGTTTATACCAATGGC 60.449 44.000 0.00 0.00 0.00 4.40
692 696 5.220586 CCGCACACTGTAGTTTATACCAATG 60.221 44.000 0.00 0.00 0.00 2.82
693 697 4.873827 CCGCACACTGTAGTTTATACCAAT 59.126 41.667 0.00 0.00 0.00 3.16
694 698 4.247258 CCGCACACTGTAGTTTATACCAA 58.753 43.478 0.00 0.00 0.00 3.67
695 699 3.258872 ACCGCACACTGTAGTTTATACCA 59.741 43.478 0.00 0.00 0.00 3.25
696 700 3.615496 CACCGCACACTGTAGTTTATACC 59.385 47.826 0.00 0.00 0.00 2.73
697 701 3.615496 CCACCGCACACTGTAGTTTATAC 59.385 47.826 0.00 0.00 0.00 1.47
698 702 3.258872 ACCACCGCACACTGTAGTTTATA 59.741 43.478 0.00 0.00 0.00 0.98
699 703 2.038033 ACCACCGCACACTGTAGTTTAT 59.962 45.455 0.00 0.00 0.00 1.40
701 705 0.179468 ACCACCGCACACTGTAGTTT 59.821 50.000 0.00 0.00 0.00 2.66
702 706 0.531974 CACCACCGCACACTGTAGTT 60.532 55.000 0.00 0.00 0.00 2.24
703 707 1.069090 CACCACCGCACACTGTAGT 59.931 57.895 0.00 0.00 0.00 2.73
705 709 2.280524 GCACCACCGCACACTGTA 60.281 61.111 0.00 0.00 0.00 2.74
713 717 4.760047 ATCACCTCGCACCACCGC 62.760 66.667 0.00 0.00 0.00 5.68
714 718 2.047274 AATCACCTCGCACCACCG 60.047 61.111 0.00 0.00 0.00 4.94
717 721 2.359850 GCCAATCACCTCGCACCA 60.360 61.111 0.00 0.00 0.00 4.17
719 723 2.401766 CCAGCCAATCACCTCGCAC 61.402 63.158 0.00 0.00 0.00 5.34
720 724 2.046023 CCAGCCAATCACCTCGCA 60.046 61.111 0.00 0.00 0.00 5.10
721 725 1.817099 CTCCAGCCAATCACCTCGC 60.817 63.158 0.00 0.00 0.00 5.03
723 727 0.747283 CAGCTCCAGCCAATCACCTC 60.747 60.000 0.00 0.00 43.38 3.85
727 731 1.676635 GCACAGCTCCAGCCAATCA 60.677 57.895 0.00 0.00 43.38 2.57
733 737 4.082523 TACCGGCACAGCTCCAGC 62.083 66.667 0.00 0.00 42.49 4.85
734 738 2.185350 CTACCGGCACAGCTCCAG 59.815 66.667 0.00 0.00 0.00 3.86
735 739 4.082523 GCTACCGGCACAGCTCCA 62.083 66.667 14.32 0.00 41.35 3.86
736 740 3.775654 AGCTACCGGCACAGCTCC 61.776 66.667 17.57 0.00 44.83 4.70
768 772 4.426736 TGGAAGACCGACTAAGGTTTTT 57.573 40.909 0.00 0.00 46.09 1.94
769 773 4.635699 ATGGAAGACCGACTAAGGTTTT 57.364 40.909 0.00 0.00 46.09 2.43
770 774 4.081254 GGTATGGAAGACCGACTAAGGTTT 60.081 45.833 0.00 0.00 46.09 3.27
771 775 3.450096 GGTATGGAAGACCGACTAAGGTT 59.550 47.826 0.00 0.00 46.09 3.50
773 777 2.364647 GGGTATGGAAGACCGACTAAGG 59.635 54.545 0.00 0.00 37.90 2.69
774 778 3.729862 GGGTATGGAAGACCGACTAAG 57.270 52.381 0.00 0.00 37.90 2.18
833 1368 5.518848 TCAAGAAGAAAAATTGCAGCTGA 57.481 34.783 20.43 0.00 0.00 4.26
834 1369 6.592798 TTTCAAGAAGAAAAATTGCAGCTG 57.407 33.333 10.11 10.11 43.00 4.24
898 1466 1.004277 CGTCTCCTCTGTTCGTGTGC 61.004 60.000 0.00 0.00 0.00 4.57
939 1519 2.208132 TCTTTGCTTATGGCCCGAAA 57.792 45.000 0.00 0.00 40.92 3.46
1145 1732 2.048222 CGAGGCGCTTGTTCAGGA 60.048 61.111 7.64 0.00 0.00 3.86
2116 2814 4.176752 GCCTTCCCCGGCTCGAAT 62.177 66.667 0.00 0.00 46.63 3.34
2386 3097 1.286849 TCCTCCCTCGATCAGTTGGTA 59.713 52.381 0.00 0.00 0.00 3.25
2533 3275 6.761731 TTGTGCAATGCAACTAAAACATAC 57.238 33.333 10.44 0.00 41.47 2.39
2567 3311 7.441017 AGTTTAGATGAAGGCAGAGTCATATC 58.559 38.462 0.00 0.00 34.61 1.63
2571 3315 5.952347 TCTAGTTTAGATGAAGGCAGAGTCA 59.048 40.000 0.00 0.00 0.00 3.41
2586 3330 3.367087 CGCGGGGGTATCATCTAGTTTAG 60.367 52.174 0.00 0.00 0.00 1.85
2587 3331 2.559668 CGCGGGGGTATCATCTAGTTTA 59.440 50.000 0.00 0.00 0.00 2.01
2588 3332 1.343465 CGCGGGGGTATCATCTAGTTT 59.657 52.381 0.00 0.00 0.00 2.66
2619 3365 0.525761 AACCAATTCCCGCATGTTCG 59.474 50.000 0.00 0.00 0.00 3.95
2766 3514 8.506437 CATTACTTTTACTTCTCTCAACATGCA 58.494 33.333 0.00 0.00 0.00 3.96
2798 3546 9.635404 TTCGGGAGTTATCATTACCATTTTATT 57.365 29.630 0.00 0.00 0.00 1.40
2822 3570 3.065371 CCATGCTTAACTCCCGAATGTTC 59.935 47.826 0.00 0.00 0.00 3.18
2823 3571 3.016736 CCATGCTTAACTCCCGAATGTT 58.983 45.455 0.00 0.00 0.00 2.71
2824 3572 2.643551 CCATGCTTAACTCCCGAATGT 58.356 47.619 0.00 0.00 0.00 2.71
2825 3573 1.334869 GCCATGCTTAACTCCCGAATG 59.665 52.381 0.00 0.00 0.00 2.67
2826 3574 1.064758 TGCCATGCTTAACTCCCGAAT 60.065 47.619 0.00 0.00 0.00 3.34
2827 3575 0.326595 TGCCATGCTTAACTCCCGAA 59.673 50.000 0.00 0.00 0.00 4.30
2828 3576 0.326595 TTGCCATGCTTAACTCCCGA 59.673 50.000 0.00 0.00 0.00 5.14
2829 3577 0.451783 GTTGCCATGCTTAACTCCCG 59.548 55.000 0.00 0.00 0.00 5.14
2830 3578 0.817654 GGTTGCCATGCTTAACTCCC 59.182 55.000 0.00 0.00 0.00 4.30
2831 3579 0.817654 GGGTTGCCATGCTTAACTCC 59.182 55.000 0.00 0.00 0.00 3.85
2832 3580 0.451783 CGGGTTGCCATGCTTAACTC 59.548 55.000 0.00 0.00 0.00 3.01
2833 3581 0.037590 TCGGGTTGCCATGCTTAACT 59.962 50.000 0.00 0.00 0.00 2.24
2834 3582 0.885196 TTCGGGTTGCCATGCTTAAC 59.115 50.000 0.00 0.00 0.00 2.01
2835 3583 0.885196 GTTCGGGTTGCCATGCTTAA 59.115 50.000 0.00 0.00 0.00 1.85
2836 3584 1.302383 CGTTCGGGTTGCCATGCTTA 61.302 55.000 0.00 0.00 0.00 3.09
2837 3585 2.625823 CGTTCGGGTTGCCATGCTT 61.626 57.895 0.00 0.00 0.00 3.91
2838 3586 3.055719 CGTTCGGGTTGCCATGCT 61.056 61.111 0.00 0.00 0.00 3.79
2839 3587 4.776647 GCGTTCGGGTTGCCATGC 62.777 66.667 0.00 0.00 0.00 4.06
2840 3588 3.055719 AGCGTTCGGGTTGCCATG 61.056 61.111 0.00 0.00 0.00 3.66
2841 3589 3.055719 CAGCGTTCGGGTTGCCAT 61.056 61.111 0.00 0.00 0.00 4.40
2842 3590 2.661840 TAACAGCGTTCGGGTTGCCA 62.662 55.000 0.00 0.00 0.00 4.92
2843 3591 1.908066 CTAACAGCGTTCGGGTTGCC 61.908 60.000 0.00 0.00 0.00 4.52
2844 3592 0.947180 TCTAACAGCGTTCGGGTTGC 60.947 55.000 0.00 0.00 0.00 4.17
2845 3593 1.393539 CATCTAACAGCGTTCGGGTTG 59.606 52.381 0.00 0.00 0.00 3.77
2846 3594 1.674817 CCATCTAACAGCGTTCGGGTT 60.675 52.381 0.00 0.00 0.00 4.11
2847 3595 0.108329 CCATCTAACAGCGTTCGGGT 60.108 55.000 0.00 0.00 0.00 5.28
2848 3596 0.108329 ACCATCTAACAGCGTTCGGG 60.108 55.000 0.00 0.00 0.00 5.14
2849 3597 2.572191 TACCATCTAACAGCGTTCGG 57.428 50.000 0.00 0.00 0.00 4.30
2850 3598 3.508762 AGTTACCATCTAACAGCGTTCG 58.491 45.455 0.00 0.00 0.00 3.95
2851 3599 5.857822 AAAGTTACCATCTAACAGCGTTC 57.142 39.130 0.00 0.00 0.00 3.95
2852 3600 6.461640 ACTAAAGTTACCATCTAACAGCGTT 58.538 36.000 0.02 0.02 0.00 4.84
2853 3601 6.034161 ACTAAAGTTACCATCTAACAGCGT 57.966 37.500 0.00 0.00 0.00 5.07
2854 3602 6.963049 AACTAAAGTTACCATCTAACAGCG 57.037 37.500 0.00 0.00 36.32 5.18
2855 3603 7.021790 GCAAACTAAAGTTACCATCTAACAGC 58.978 38.462 0.00 0.00 37.25 4.40
2856 3604 7.095355 ACGCAAACTAAAGTTACCATCTAACAG 60.095 37.037 0.00 0.00 37.25 3.16
2857 3605 6.707161 ACGCAAACTAAAGTTACCATCTAACA 59.293 34.615 0.00 0.00 37.25 2.41
2858 3606 7.013529 CACGCAAACTAAAGTTACCATCTAAC 58.986 38.462 0.00 0.00 37.25 2.34
2859 3607 6.930164 TCACGCAAACTAAAGTTACCATCTAA 59.070 34.615 0.00 0.00 37.25 2.10
2860 3608 6.457355 TCACGCAAACTAAAGTTACCATCTA 58.543 36.000 0.00 0.00 37.25 1.98
2861 3609 5.302360 TCACGCAAACTAAAGTTACCATCT 58.698 37.500 0.00 0.00 37.25 2.90
2862 3610 5.407387 TCTCACGCAAACTAAAGTTACCATC 59.593 40.000 0.00 0.00 37.25 3.51
2863 3611 5.302360 TCTCACGCAAACTAAAGTTACCAT 58.698 37.500 0.00 0.00 37.25 3.55
2864 3612 4.695396 TCTCACGCAAACTAAAGTTACCA 58.305 39.130 0.00 0.00 37.25 3.25
2865 3613 5.857822 ATCTCACGCAAACTAAAGTTACC 57.142 39.130 0.00 0.00 37.25 2.85
2866 3614 7.330208 TCCTAATCTCACGCAAACTAAAGTTAC 59.670 37.037 0.00 0.00 37.25 2.50
2867 3615 7.380536 TCCTAATCTCACGCAAACTAAAGTTA 58.619 34.615 0.00 0.00 37.25 2.24
2868 3616 6.228258 TCCTAATCTCACGCAAACTAAAGTT 58.772 36.000 0.00 0.00 40.50 2.66
2869 3617 5.790593 TCCTAATCTCACGCAAACTAAAGT 58.209 37.500 0.00 0.00 0.00 2.66
2870 3618 6.721571 TTCCTAATCTCACGCAAACTAAAG 57.278 37.500 0.00 0.00 0.00 1.85
2871 3619 7.012515 TGTTTTCCTAATCTCACGCAAACTAAA 59.987 33.333 0.00 0.00 0.00 1.85
2872 3620 6.483974 TGTTTTCCTAATCTCACGCAAACTAA 59.516 34.615 0.00 0.00 0.00 2.24
2873 3621 5.992829 TGTTTTCCTAATCTCACGCAAACTA 59.007 36.000 0.00 0.00 0.00 2.24
2874 3622 4.819630 TGTTTTCCTAATCTCACGCAAACT 59.180 37.500 0.00 0.00 0.00 2.66
2875 3623 5.103290 TGTTTTCCTAATCTCACGCAAAC 57.897 39.130 0.00 0.00 0.00 2.93
2876 3624 5.335583 CCATGTTTTCCTAATCTCACGCAAA 60.336 40.000 0.00 0.00 0.00 3.68
2877 3625 4.155826 CCATGTTTTCCTAATCTCACGCAA 59.844 41.667 0.00 0.00 0.00 4.85
2878 3626 3.689161 CCATGTTTTCCTAATCTCACGCA 59.311 43.478 0.00 0.00 0.00 5.24
2879 3627 3.487544 GCCATGTTTTCCTAATCTCACGC 60.488 47.826 0.00 0.00 0.00 5.34
2880 3628 3.689161 TGCCATGTTTTCCTAATCTCACG 59.311 43.478 0.00 0.00 0.00 4.35
2881 3629 5.643379 TTGCCATGTTTTCCTAATCTCAC 57.357 39.130 0.00 0.00 0.00 3.51
2882 3630 6.855763 AATTGCCATGTTTTCCTAATCTCA 57.144 33.333 0.00 0.00 0.00 3.27
2883 3631 8.037166 AGAAAATTGCCATGTTTTCCTAATCTC 58.963 33.333 12.96 0.00 42.45 2.75
2884 3632 7.820872 CAGAAAATTGCCATGTTTTCCTAATCT 59.179 33.333 12.96 0.00 42.45 2.40
2885 3633 7.818930 TCAGAAAATTGCCATGTTTTCCTAATC 59.181 33.333 12.96 0.00 42.45 1.75
2886 3634 7.678837 TCAGAAAATTGCCATGTTTTCCTAAT 58.321 30.769 12.96 0.00 42.45 1.73
2887 3635 7.060383 TCAGAAAATTGCCATGTTTTCCTAA 57.940 32.000 12.96 1.09 42.45 2.69
2888 3636 6.662865 TCAGAAAATTGCCATGTTTTCCTA 57.337 33.333 12.96 2.91 42.45 2.94
2889 3637 5.549742 TCAGAAAATTGCCATGTTTTCCT 57.450 34.783 12.96 2.45 42.45 3.36
2890 3638 7.903995 TTATCAGAAAATTGCCATGTTTTCC 57.096 32.000 12.96 0.73 42.45 3.13
2892 3640 9.949174 GTTTTTATCAGAAAATTGCCATGTTTT 57.051 25.926 0.00 0.00 31.80 2.43
2893 3641 8.281893 CGTTTTTATCAGAAAATTGCCATGTTT 58.718 29.630 0.00 0.00 31.80 2.83
2894 3642 7.655328 TCGTTTTTATCAGAAAATTGCCATGTT 59.345 29.630 0.00 0.00 31.80 2.71
2895 3643 7.151308 TCGTTTTTATCAGAAAATTGCCATGT 58.849 30.769 0.00 0.00 31.80 3.21
2896 3644 7.579589 TCGTTTTTATCAGAAAATTGCCATG 57.420 32.000 0.00 0.00 31.80 3.66
2897 3645 8.600449 TTTCGTTTTTATCAGAAAATTGCCAT 57.400 26.923 0.00 0.00 31.80 4.40
2898 3646 8.425577 TTTTCGTTTTTATCAGAAAATTGCCA 57.574 26.923 0.00 0.00 37.57 4.92
2899 3647 9.368921 CTTTTTCGTTTTTATCAGAAAATTGCC 57.631 29.630 3.54 0.00 40.71 4.52
2900 3648 9.368921 CCTTTTTCGTTTTTATCAGAAAATTGC 57.631 29.630 3.54 0.00 40.71 3.56
2913 3661 9.607988 ATGGAAACTTTATCCTTTTTCGTTTTT 57.392 25.926 0.00 0.00 37.85 1.94
2914 3662 9.256477 GATGGAAACTTTATCCTTTTTCGTTTT 57.744 29.630 0.00 0.00 37.85 2.43
2915 3663 7.870954 GGATGGAAACTTTATCCTTTTTCGTTT 59.129 33.333 0.00 0.00 37.86 3.60
2916 3664 7.375834 GGATGGAAACTTTATCCTTTTTCGTT 58.624 34.615 0.00 0.00 37.86 3.85
2917 3665 6.071560 GGGATGGAAACTTTATCCTTTTTCGT 60.072 38.462 0.00 0.00 40.17 3.85
2918 3666 6.330278 GGGATGGAAACTTTATCCTTTTTCG 58.670 40.000 0.00 0.00 40.17 3.46
2919 3667 6.440647 AGGGGATGGAAACTTTATCCTTTTTC 59.559 38.462 0.00 0.00 40.17 2.29
2920 3668 6.331032 AGGGGATGGAAACTTTATCCTTTTT 58.669 36.000 0.00 0.00 40.17 1.94
2921 3669 5.915628 AGGGGATGGAAACTTTATCCTTTT 58.084 37.500 0.00 0.00 40.17 2.27
2922 3670 5.552430 AGGGGATGGAAACTTTATCCTTT 57.448 39.130 0.00 0.00 40.17 3.11
2923 3671 6.392842 TGATAGGGGATGGAAACTTTATCCTT 59.607 38.462 0.00 0.00 40.17 3.36
2924 3672 5.917087 TGATAGGGGATGGAAACTTTATCCT 59.083 40.000 0.00 0.00 40.17 3.24
2925 3673 6.200878 TGATAGGGGATGGAAACTTTATCC 57.799 41.667 0.00 0.00 39.69 2.59
2926 3674 7.290813 AGTTGATAGGGGATGGAAACTTTATC 58.709 38.462 0.00 0.00 0.00 1.75
2927 3675 7.226059 AGTTGATAGGGGATGGAAACTTTAT 57.774 36.000 0.00 0.00 0.00 1.40
2928 3676 6.652205 AGTTGATAGGGGATGGAAACTTTA 57.348 37.500 0.00 0.00 0.00 1.85
2929 3677 5.536497 AGTTGATAGGGGATGGAAACTTT 57.464 39.130 0.00 0.00 0.00 2.66
2930 3678 6.652205 TTAGTTGATAGGGGATGGAAACTT 57.348 37.500 0.00 0.00 0.00 2.66
2931 3679 6.217693 ACTTTAGTTGATAGGGGATGGAAACT 59.782 38.462 0.00 0.00 0.00 2.66
2932 3680 6.424032 ACTTTAGTTGATAGGGGATGGAAAC 58.576 40.000 0.00 0.00 0.00 2.78
2933 3681 6.652205 ACTTTAGTTGATAGGGGATGGAAA 57.348 37.500 0.00 0.00 0.00 3.13
2934 3682 6.652205 AACTTTAGTTGATAGGGGATGGAA 57.348 37.500 0.00 0.00 36.80 3.53
2948 3696 3.621461 CGTAGGGGATGGCAACTTTAGTT 60.621 47.826 0.00 0.00 39.12 2.24
2949 3697 2.093128 CGTAGGGGATGGCAACTTTAGT 60.093 50.000 0.00 0.00 37.61 2.24
2950 3698 2.169769 TCGTAGGGGATGGCAACTTTAG 59.830 50.000 0.00 0.00 37.61 1.85
2951 3699 2.189676 TCGTAGGGGATGGCAACTTTA 58.810 47.619 0.00 0.00 37.61 1.85
2952 3700 0.988832 TCGTAGGGGATGGCAACTTT 59.011 50.000 0.00 0.00 37.61 2.66
2953 3701 0.988832 TTCGTAGGGGATGGCAACTT 59.011 50.000 0.00 0.00 37.61 2.66
2954 3702 0.252197 GTTCGTAGGGGATGGCAACT 59.748 55.000 0.00 0.00 37.61 3.16
2955 3703 0.252197 AGTTCGTAGGGGATGGCAAC 59.748 55.000 0.00 0.00 0.00 4.17
2956 3704 1.868713 TAGTTCGTAGGGGATGGCAA 58.131 50.000 0.00 0.00 0.00 4.52
2957 3705 1.868713 TTAGTTCGTAGGGGATGGCA 58.131 50.000 0.00 0.00 0.00 4.92
2958 3706 2.169978 ACTTTAGTTCGTAGGGGATGGC 59.830 50.000 0.00 0.00 0.00 4.40
2959 3707 4.189231 CAACTTTAGTTCGTAGGGGATGG 58.811 47.826 0.00 0.00 35.83 3.51
2960 3708 3.621715 GCAACTTTAGTTCGTAGGGGATG 59.378 47.826 0.00 0.00 35.83 3.51
2961 3709 3.370209 GGCAACTTTAGTTCGTAGGGGAT 60.370 47.826 0.00 0.00 35.83 3.85
2962 3710 2.027837 GGCAACTTTAGTTCGTAGGGGA 60.028 50.000 0.00 0.00 35.83 4.81
2963 3711 2.289819 TGGCAACTTTAGTTCGTAGGGG 60.290 50.000 0.00 0.00 35.83 4.79
2964 3712 3.048337 TGGCAACTTTAGTTCGTAGGG 57.952 47.619 0.00 0.00 35.83 3.53
2965 3713 4.000988 ACATGGCAACTTTAGTTCGTAGG 58.999 43.478 0.00 0.00 35.83 3.18
2966 3714 4.688879 TGACATGGCAACTTTAGTTCGTAG 59.311 41.667 0.00 0.00 35.83 3.51
2967 3715 4.633175 TGACATGGCAACTTTAGTTCGTA 58.367 39.130 0.00 0.00 35.83 3.43
2968 3716 3.472652 TGACATGGCAACTTTAGTTCGT 58.527 40.909 0.00 0.00 35.83 3.85
2969 3717 4.481930 TTGACATGGCAACTTTAGTTCG 57.518 40.909 10.79 0.00 35.83 3.95
2970 3718 6.273071 AGTTTTGACATGGCAACTTTAGTTC 58.727 36.000 15.21 0.00 35.83 3.01
2971 3719 6.220726 AGTTTTGACATGGCAACTTTAGTT 57.779 33.333 15.21 0.00 39.12 2.24
2972 3720 5.852282 AGTTTTGACATGGCAACTTTAGT 57.148 34.783 15.21 0.00 37.61 2.24
2973 3721 6.756074 TGAAAGTTTTGACATGGCAACTTTAG 59.244 34.615 24.73 0.00 45.25 1.85
2974 3722 6.634805 TGAAAGTTTTGACATGGCAACTTTA 58.365 32.000 24.73 14.00 45.25 1.85
2975 3723 5.486526 TGAAAGTTTTGACATGGCAACTTT 58.513 33.333 24.88 24.88 46.97 2.66
2976 3724 5.083533 TGAAAGTTTTGACATGGCAACTT 57.916 34.783 15.21 13.38 40.43 2.66
2977 3725 4.734398 TGAAAGTTTTGACATGGCAACT 57.266 36.364 15.21 6.80 37.61 3.16
2978 3726 5.049167 TCATGAAAGTTTTGACATGGCAAC 58.951 37.500 15.21 3.98 40.00 4.17
2979 3727 5.049167 GTCATGAAAGTTTTGACATGGCAA 58.951 37.500 10.79 10.79 42.49 4.52
2980 3728 4.619973 GTCATGAAAGTTTTGACATGGCA 58.380 39.130 13.27 0.00 42.49 4.92
2981 3729 3.670055 CGTCATGAAAGTTTTGACATGGC 59.330 43.478 16.74 13.10 39.75 4.40
2982 3730 5.107109 TCGTCATGAAAGTTTTGACATGG 57.893 39.130 16.74 5.02 39.75 3.66
2983 3731 6.141211 CAGTTCGTCATGAAAGTTTTGACATG 59.859 38.462 16.74 12.86 39.75 3.21
2984 3732 6.201517 CAGTTCGTCATGAAAGTTTTGACAT 58.798 36.000 16.74 2.71 39.75 3.06
2985 3733 5.568482 CAGTTCGTCATGAAAGTTTTGACA 58.432 37.500 16.74 0.58 39.75 3.58
2986 3734 4.437820 GCAGTTCGTCATGAAAGTTTTGAC 59.562 41.667 9.49 9.49 38.60 3.18
2987 3735 4.335315 AGCAGTTCGTCATGAAAGTTTTGA 59.665 37.500 0.00 0.00 38.60 2.69
2988 3736 4.601019 AGCAGTTCGTCATGAAAGTTTTG 58.399 39.130 0.00 0.00 38.60 2.44
2989 3737 4.335315 TGAGCAGTTCGTCATGAAAGTTTT 59.665 37.500 0.00 0.00 38.60 2.43
2990 3738 3.876914 TGAGCAGTTCGTCATGAAAGTTT 59.123 39.130 0.00 0.00 38.60 2.66
2991 3739 3.466836 TGAGCAGTTCGTCATGAAAGTT 58.533 40.909 0.00 0.00 38.60 2.66
2992 3740 3.111853 TGAGCAGTTCGTCATGAAAGT 57.888 42.857 0.00 0.00 38.60 2.66
2993 3741 4.472691 TTTGAGCAGTTCGTCATGAAAG 57.527 40.909 0.00 0.00 38.60 2.62
2994 3742 4.083324 GGATTTGAGCAGTTCGTCATGAAA 60.083 41.667 0.00 0.00 38.60 2.69
2995 3743 3.436704 GGATTTGAGCAGTTCGTCATGAA 59.563 43.478 0.00 0.00 0.00 2.57
2996 3744 3.002791 GGATTTGAGCAGTTCGTCATGA 58.997 45.455 0.00 0.00 0.00 3.07
2997 3745 3.005554 AGGATTTGAGCAGTTCGTCATG 58.994 45.455 0.00 0.00 0.00 3.07
2998 3746 3.005554 CAGGATTTGAGCAGTTCGTCAT 58.994 45.455 0.00 0.00 0.00 3.06
2999 3747 2.037121 TCAGGATTTGAGCAGTTCGTCA 59.963 45.455 0.00 0.00 0.00 4.35
3000 3748 2.688507 TCAGGATTTGAGCAGTTCGTC 58.311 47.619 0.00 0.00 0.00 4.20
3001 3749 2.808543 GTTCAGGATTTGAGCAGTTCGT 59.191 45.455 0.00 0.00 37.04 3.85
3002 3750 2.159787 CGTTCAGGATTTGAGCAGTTCG 60.160 50.000 0.00 0.00 36.89 3.95
3003 3751 2.808543 ACGTTCAGGATTTGAGCAGTTC 59.191 45.455 0.00 0.00 36.89 3.01
3004 3752 2.851195 ACGTTCAGGATTTGAGCAGTT 58.149 42.857 0.00 0.00 36.89 3.16
3005 3753 2.550830 ACGTTCAGGATTTGAGCAGT 57.449 45.000 0.00 0.00 36.89 4.40
3006 3754 2.159787 CGAACGTTCAGGATTTGAGCAG 60.160 50.000 26.71 3.07 36.89 4.24
3007 3755 1.798223 CGAACGTTCAGGATTTGAGCA 59.202 47.619 26.71 0.00 36.89 4.26
3008 3756 1.128692 CCGAACGTTCAGGATTTGAGC 59.871 52.381 26.71 0.00 37.07 4.26
3009 3757 1.732259 CCCGAACGTTCAGGATTTGAG 59.268 52.381 28.81 14.51 37.07 3.02
3010 3758 1.345089 TCCCGAACGTTCAGGATTTGA 59.655 47.619 25.93 16.52 29.02 2.69
3011 3759 1.732259 CTCCCGAACGTTCAGGATTTG 59.268 52.381 28.81 16.45 33.52 2.32
3012 3760 1.346722 ACTCCCGAACGTTCAGGATTT 59.653 47.619 28.81 18.14 33.52 2.17
3013 3761 0.974383 ACTCCCGAACGTTCAGGATT 59.026 50.000 28.81 22.19 33.52 3.01
3014 3762 0.974383 AACTCCCGAACGTTCAGGAT 59.026 50.000 28.81 15.67 33.52 3.24
3015 3763 1.619654 TAACTCCCGAACGTTCAGGA 58.380 50.000 27.33 27.33 32.98 3.86
3016 3764 2.667473 ATAACTCCCGAACGTTCAGG 57.333 50.000 26.71 24.49 0.00 3.86
3017 3765 2.671396 CCAATAACTCCCGAACGTTCAG 59.329 50.000 26.71 18.68 0.00 3.02
3018 3766 2.299582 TCCAATAACTCCCGAACGTTCA 59.700 45.455 26.71 7.82 0.00 3.18
3019 3767 2.963432 TCCAATAACTCCCGAACGTTC 58.037 47.619 18.47 18.47 0.00 3.95
3020 3768 3.622166 ATCCAATAACTCCCGAACGTT 57.378 42.857 0.00 0.00 0.00 3.99
3021 3769 3.528532 GAATCCAATAACTCCCGAACGT 58.471 45.455 0.00 0.00 0.00 3.99
3022 3770 2.870411 GGAATCCAATAACTCCCGAACG 59.130 50.000 0.00 0.00 0.00 3.95
3023 3771 4.152284 AGGAATCCAATAACTCCCGAAC 57.848 45.455 0.61 0.00 0.00 3.95
3024 3772 5.961398 TTAGGAATCCAATAACTCCCGAA 57.039 39.130 0.61 0.00 0.00 4.30
3025 3773 7.621006 TTATTAGGAATCCAATAACTCCCGA 57.379 36.000 0.61 0.00 0.00 5.14
3026 3774 8.685838 TTTTATTAGGAATCCAATAACTCCCG 57.314 34.615 0.61 0.00 0.00 5.14
3034 3782 8.873144 CACATCCCATTTTATTAGGAATCCAAT 58.127 33.333 0.61 2.30 30.71 3.16
3035 3783 7.843760 ACACATCCCATTTTATTAGGAATCCAA 59.156 33.333 0.61 0.00 30.71 3.53
3036 3784 7.287466 CACACATCCCATTTTATTAGGAATCCA 59.713 37.037 0.61 0.00 30.71 3.41
3037 3785 7.661040 CACACATCCCATTTTATTAGGAATCC 58.339 38.462 0.00 0.00 30.71 3.01
3038 3786 7.147976 GCACACATCCCATTTTATTAGGAATC 58.852 38.462 0.00 0.00 30.71 2.52
3039 3787 6.610830 TGCACACATCCCATTTTATTAGGAAT 59.389 34.615 0.00 0.00 30.71 3.01
3040 3788 5.954752 TGCACACATCCCATTTTATTAGGAA 59.045 36.000 0.00 0.00 30.71 3.36
3041 3789 5.514169 TGCACACATCCCATTTTATTAGGA 58.486 37.500 0.00 0.00 0.00 2.94
3042 3790 5.850557 TGCACACATCCCATTTTATTAGG 57.149 39.130 0.00 0.00 0.00 2.69
3043 3791 6.808829 ACATGCACACATCCCATTTTATTAG 58.191 36.000 0.00 0.00 32.87 1.73
3044 3792 6.788598 ACATGCACACATCCCATTTTATTA 57.211 33.333 0.00 0.00 32.87 0.98
3045 3793 5.680594 ACATGCACACATCCCATTTTATT 57.319 34.783 0.00 0.00 32.87 1.40
3046 3794 5.187381 TCAACATGCACACATCCCATTTTAT 59.813 36.000 0.00 0.00 32.87 1.40
3047 3795 4.525874 TCAACATGCACACATCCCATTTTA 59.474 37.500 0.00 0.00 32.87 1.52
3048 3796 3.324268 TCAACATGCACACATCCCATTTT 59.676 39.130 0.00 0.00 32.87 1.82
3049 3797 2.898612 TCAACATGCACACATCCCATTT 59.101 40.909 0.00 0.00 32.87 2.32
3050 3798 2.494471 CTCAACATGCACACATCCCATT 59.506 45.455 0.00 0.00 32.87 3.16
3051 3799 2.097036 CTCAACATGCACACATCCCAT 58.903 47.619 0.00 0.00 32.87 4.00
3052 3800 1.073603 TCTCAACATGCACACATCCCA 59.926 47.619 0.00 0.00 32.87 4.37
3053 3801 1.825090 TCTCAACATGCACACATCCC 58.175 50.000 0.00 0.00 32.87 3.85
3090 3838 3.950395 GCTGCCTATGAATTCTTTCACCT 59.050 43.478 7.05 0.00 44.36 4.00
3098 3846 5.176958 GCATGAAAATGCTGCCTATGAATTC 59.823 40.000 0.00 0.00 43.79 2.17
3111 3859 6.777101 TCTTAATTTGCATGCATGAAAATGC 58.223 32.000 35.74 21.00 43.51 3.56
3156 3904 1.582968 GCACACTTGCCACCTCATG 59.417 57.895 0.00 0.00 43.66 3.07
3177 3925 8.780846 TCGCCACTACTTCAATCTATTTTAAA 57.219 30.769 0.00 0.00 0.00 1.52
3224 3972 4.981674 TGTGCAATGCAACTAAAAACTAGC 59.018 37.500 10.44 0.00 41.47 3.42
3236 3985 4.157289 ACCAATTTGTTTTGTGCAATGCAA 59.843 33.333 10.44 0.00 41.47 4.08
3257 4006 9.712305 ACATTATGTCTATAATAGAGTTGCACC 57.288 33.333 0.00 0.00 37.38 5.01
3325 4074 7.981102 AGGTTTAACAATGTCTAAGGTCTTC 57.019 36.000 0.00 0.00 0.00 2.87
3337 4086 5.362717 GGGATAGGGGAAAGGTTTAACAATG 59.637 44.000 0.00 0.00 0.00 2.82
3360 4109 0.741915 GCTCTCCCTAGTCGTCTTGG 59.258 60.000 3.37 3.37 36.57 3.61
3363 4112 0.626916 AAGGCTCTCCCTAGTCGTCT 59.373 55.000 0.00 0.00 45.62 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.