Multiple sequence alignment - TraesCS4B01G308500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G308500 chr4B 100.000 3678 0 0 1 3678 599332809 599329132 0.000000e+00 6793.0
1 TraesCS4B01G308500 chr4B 75.353 1274 231 58 1409 2609 599351264 599350001 1.500000e-148 536.0
2 TraesCS4B01G308500 chr4B 73.680 1212 254 50 1410 2596 599236149 599234978 9.510000e-111 411.0
3 TraesCS4B01G308500 chr4B 90.588 85 8 0 3294 3378 17960398 17960314 3.000000e-21 113.0
4 TraesCS4B01G308500 chr4D 94.417 3063 105 27 3 3018 474940957 474944000 0.000000e+00 4649.0
5 TraesCS4B01G308500 chr4D 73.532 1209 255 52 1410 2593 474948419 474949587 2.060000e-107 399.0
6 TraesCS4B01G308500 chr4D 75.417 720 140 31 1406 2093 474920910 474921624 7.670000e-82 315.0
7 TraesCS4B01G308500 chr4D 91.053 190 10 1 3489 3678 474944001 474944183 2.190000e-62 250.0
8 TraesCS4B01G308500 chr4D 92.105 38 1 2 3568 3604 25133835 25133799 7.000000e-03 52.8
9 TraesCS4B01G308500 chr4A 93.931 2274 104 21 580 2828 681120278 681118014 0.000000e+00 3404.0
10 TraesCS4B01G308500 chr4A 83.750 640 61 26 20 650 681149458 681148853 1.920000e-157 566.0
11 TraesCS4B01G308500 chr4A 75.671 1266 229 52 1409 2609 681177566 681176315 3.210000e-155 558.0
12 TraesCS4B01G308500 chr4A 74.050 1210 241 60 1416 2596 681113321 681112156 9.440000e-116 427.0
13 TraesCS4B01G308500 chr4A 82.246 552 33 28 37 582 681121041 681120549 2.040000e-112 416.0
14 TraesCS4B01G308500 chr4A 90.367 218 21 0 3063 3280 551324680 551324897 1.670000e-73 287.0
15 TraesCS4B01G308500 chr3D 77.177 999 201 23 1595 2578 47755388 47756374 1.150000e-154 556.0
16 TraesCS4B01G308500 chr3D 85.659 258 32 3 3061 3315 481721054 481721309 2.180000e-67 267.0
17 TraesCS4B01G308500 chr3D 72.676 527 112 30 1988 2498 8893188 8893698 2.960000e-31 147.0
18 TraesCS4B01G308500 chr3D 91.753 97 7 1 3380 3476 557698364 557698269 2.300000e-27 134.0
19 TraesCS4B01G308500 chr3D 86.325 117 16 0 3358 3474 481721395 481721511 1.070000e-25 128.0
20 TraesCS4B01G308500 chr3A 75.275 1181 262 27 1410 2575 60193472 60194637 1.500000e-148 536.0
21 TraesCS4B01G308500 chr3A 90.722 97 9 0 3380 3476 12175465 12175369 2.980000e-26 130.0
22 TraesCS4B01G308500 chr2D 72.795 1213 263 53 1410 2596 199762672 199761501 2.100000e-92 350.0
23 TraesCS4B01G308500 chr2D 87.603 242 26 3 3060 3297 3954184 3954425 1.010000e-70 278.0
24 TraesCS4B01G308500 chr5D 88.655 238 25 2 3062 3297 507510089 507509852 4.650000e-74 289.0
25 TraesCS4B01G308500 chr5D 87.764 237 27 2 3063 3297 16748997 16748761 3.620000e-70 276.0
26 TraesCS4B01G308500 chr5D 77.608 393 78 10 2212 2597 101422497 101422108 2.860000e-56 230.0
27 TraesCS4B01G308500 chr5D 92.105 38 1 2 3568 3604 479104705 479104669 7.000000e-03 52.8
28 TraesCS4B01G308500 chr2A 88.655 238 25 2 3062 3297 603681648 603681411 4.650000e-74 289.0
29 TraesCS4B01G308500 chr2A 87.603 242 26 4 3055 3296 700529835 700530072 1.010000e-70 278.0
30 TraesCS4B01G308500 chr2A 91.489 94 8 0 3380 3473 1504209 1504302 2.980000e-26 130.0
31 TraesCS4B01G308500 chr2A 90.722 97 9 0 3377 3473 583601651 583601747 2.980000e-26 130.0
32 TraesCS4B01G308500 chr2A 90.426 94 9 0 3380 3473 200415669 200415576 1.390000e-24 124.0
33 TraesCS4B01G308500 chr2A 89.691 97 10 0 3377 3473 693233595 693233691 1.390000e-24 124.0
34 TraesCS4B01G308500 chr2B 87.654 243 28 1 3063 3305 711219444 711219684 7.780000e-72 281.0
35 TraesCS4B01G308500 chrUn 88.085 235 26 1 3063 3297 50799245 50799013 1.010000e-70 278.0
36 TraesCS4B01G308500 chrUn 92.105 38 1 2 3568 3604 402135363 402135327 7.000000e-03 52.8
37 TraesCS4B01G308500 chr5B 78.372 393 75 10 2212 2597 109679682 109679293 2.840000e-61 246.0
38 TraesCS4B01G308500 chr5B 90.588 85 8 0 3294 3378 539660083 539660167 3.000000e-21 113.0
39 TraesCS4B01G308500 chr5B 87.778 90 10 1 3291 3379 13221552 13221641 1.810000e-18 104.0
40 TraesCS4B01G308500 chr5A 77.608 393 78 10 2212 2597 99103860 99104249 2.860000e-56 230.0
41 TraesCS4B01G308500 chr5A 90.909 99 9 0 3377 3475 680837488 680837586 2.300000e-27 134.0
42 TraesCS4B01G308500 chr3B 76.206 311 67 7 2222 2530 11066015 11065710 1.370000e-34 158.0
43 TraesCS4B01G308500 chr3B 90.722 97 9 0 3377 3473 578779263 578779167 2.980000e-26 130.0
44 TraesCS4B01G308500 chr3B 90.588 85 8 0 3294 3378 407973486 407973402 3.000000e-21 113.0
45 TraesCS4B01G308500 chr3B 90.588 85 8 0 3294 3378 728752194 728752110 3.000000e-21 113.0
46 TraesCS4B01G308500 chr1A 74.503 302 68 6 1422 1723 250443971 250443679 4.990000e-24 122.0
47 TraesCS4B01G308500 chr1B 88.889 90 9 1 3290 3378 53074932 53074843 3.880000e-20 110.0
48 TraesCS4B01G308500 chr7D 89.412 85 9 0 3294 3378 566448884 566448800 1.400000e-19 108.0
49 TraesCS4B01G308500 chr7D 92.105 38 1 2 3568 3604 353876044 353876008 7.000000e-03 52.8
50 TraesCS4B01G308500 chr7B 85.106 94 13 1 3286 3379 142608304 142608212 1.090000e-15 95.3
51 TraesCS4B01G308500 chr7B 85.106 94 13 1 3286 3379 319389915 319390007 1.090000e-15 95.3
52 TraesCS4B01G308500 chr1D 100.000 28 0 0 3568 3595 84888677 84888704 7.000000e-03 52.8
53 TraesCS4B01G308500 chr1D 92.105 38 1 2 3568 3604 476377614 476377578 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G308500 chr4B 599329132 599332809 3677 True 6793.0 6793 100.0000 1 3678 1 chr4B.!!$R3 3677
1 TraesCS4B01G308500 chr4B 599350001 599351264 1263 True 536.0 536 75.3530 1409 2609 1 chr4B.!!$R4 1200
2 TraesCS4B01G308500 chr4B 599234978 599236149 1171 True 411.0 411 73.6800 1410 2596 1 chr4B.!!$R2 1186
3 TraesCS4B01G308500 chr4D 474940957 474944183 3226 False 2449.5 4649 92.7350 3 3678 2 chr4D.!!$F3 3675
4 TraesCS4B01G308500 chr4D 474948419 474949587 1168 False 399.0 399 73.5320 1410 2593 1 chr4D.!!$F2 1183
5 TraesCS4B01G308500 chr4D 474920910 474921624 714 False 315.0 315 75.4170 1406 2093 1 chr4D.!!$F1 687
6 TraesCS4B01G308500 chr4A 681118014 681121041 3027 True 1910.0 3404 88.0885 37 2828 2 chr4A.!!$R4 2791
7 TraesCS4B01G308500 chr4A 681148853 681149458 605 True 566.0 566 83.7500 20 650 1 chr4A.!!$R2 630
8 TraesCS4B01G308500 chr4A 681176315 681177566 1251 True 558.0 558 75.6710 1409 2609 1 chr4A.!!$R3 1200
9 TraesCS4B01G308500 chr4A 681112156 681113321 1165 True 427.0 427 74.0500 1416 2596 1 chr4A.!!$R1 1180
10 TraesCS4B01G308500 chr3D 47755388 47756374 986 False 556.0 556 77.1770 1595 2578 1 chr3D.!!$F2 983
11 TraesCS4B01G308500 chr3A 60193472 60194637 1165 False 536.0 536 75.2750 1410 2575 1 chr3A.!!$F1 1165
12 TraesCS4B01G308500 chr2D 199761501 199762672 1171 True 350.0 350 72.7950 1410 2596 1 chr2D.!!$R1 1186

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
289 294 0.035820 GCCATGGACGTAACCAGGAA 60.036 55.0 18.40 0.0 43.28 3.36 F
1024 1337 0.391130 AATTGGCGTCGCAAGCTCTA 60.391 50.0 20.50 0.0 34.52 2.43 F
1108 1425 0.677731 TAGATGCCTTGCTTGCGCTT 60.678 50.0 9.73 0.0 36.97 4.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2077 2431 1.226603 GCCGACGAACGCTATCAGT 60.227 57.895 0.00 0.0 41.07 3.41 R
2635 3034 0.247460 TCTCCATGGCGTGACTGAAG 59.753 55.000 6.96 0.0 0.00 3.02 R
3045 3467 0.319728 TTCTCAGAGACACTGCTGCC 59.680 55.000 0.00 0.0 45.38 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 4.094476 AGAAAAGATCCGAACAGACCCTA 58.906 43.478 0.00 0.00 0.00 3.53
41 42 4.160626 AGAAAAGATCCGAACAGACCCTAG 59.839 45.833 0.00 0.00 0.00 3.02
53 55 6.407074 CGAACAGACCCTAGTTATTCCTGATT 60.407 42.308 0.00 0.00 0.00 2.57
84 86 3.555547 CGACAAGGAATCACGCATGAATA 59.444 43.478 0.00 0.00 38.69 1.75
112 114 3.683365 TCTGCATTGTGAACAGAGCTA 57.317 42.857 9.57 0.00 35.58 3.32
235 240 5.049828 CAGAGTTCATATGCGTTGGATGTA 58.950 41.667 0.00 0.00 0.00 2.29
241 246 1.922570 ATGCGTTGGATGTAGTCGAC 58.077 50.000 7.70 7.70 0.00 4.20
289 294 0.035820 GCCATGGACGTAACCAGGAA 60.036 55.000 18.40 0.00 43.28 3.36
344 349 3.076621 TCTGCCAGAGCACTGTTAATTG 58.923 45.455 10.37 0.00 46.52 2.32
349 354 4.728882 GCCAGAGCACTGTTAATTGATTCG 60.729 45.833 10.37 0.00 42.05 3.34
351 356 4.393062 CAGAGCACTGTTAATTGATTCGGT 59.607 41.667 2.59 0.00 39.11 4.69
468 480 6.923928 CTGAAGTAGGAGTAGTACAGGTAC 57.076 45.833 2.52 1.33 36.35 3.34
469 481 5.423015 TGAAGTAGGAGTAGTACAGGTACG 58.577 45.833 2.52 0.00 40.80 3.67
470 482 5.187772 TGAAGTAGGAGTAGTACAGGTACGA 59.812 44.000 2.52 0.00 40.80 3.43
471 483 5.275067 AGTAGGAGTAGTACAGGTACGAG 57.725 47.826 2.52 0.00 40.80 4.18
472 484 4.714308 AGTAGGAGTAGTACAGGTACGAGT 59.286 45.833 2.52 2.24 40.80 4.18
473 485 3.871485 AGGAGTAGTACAGGTACGAGTG 58.129 50.000 2.52 0.00 40.80 3.51
474 486 3.262915 AGGAGTAGTACAGGTACGAGTGT 59.737 47.826 2.52 0.10 40.80 3.55
481 495 5.174395 AGTACAGGTACGAGTGTAGTACAG 58.826 45.833 2.39 0.00 44.45 2.74
508 522 5.116180 ACGCTCGATCCAAATTTCTTCATA 58.884 37.500 0.00 0.00 0.00 2.15
515 529 7.875041 TCGATCCAAATTTCTTCATATCTCTCC 59.125 37.037 0.00 0.00 0.00 3.71
526 541 3.591527 TCATATCTCTCCCCCTCTCTCTC 59.408 52.174 0.00 0.00 0.00 3.20
634 923 5.175388 AGTACTAAAATTCCCACTGTCCC 57.825 43.478 0.00 0.00 0.00 4.46
640 929 1.125093 ATTCCCACTGTCCCGTGTCA 61.125 55.000 0.00 0.00 33.07 3.58
729 1028 2.017782 GTAGATCGCCAGAGACAGTGA 58.982 52.381 0.00 0.00 0.00 3.41
863 1167 1.514228 GCTCGTCGCTCGTTCATCA 60.514 57.895 0.00 0.00 40.80 3.07
867 1171 1.443872 GTCGCTCGTTCATCACCGT 60.444 57.895 0.00 0.00 0.00 4.83
907 1214 9.622004 CGTCGATCTACAACATTAGGTTTATAT 57.378 33.333 0.00 0.00 37.72 0.86
974 1285 2.681848 CTGCTTGCCATTTCTGGAGTAG 59.318 50.000 0.00 0.00 46.37 2.57
977 1288 3.623510 GCTTGCCATTTCTGGAGTAGTAC 59.376 47.826 0.00 0.00 46.37 2.73
1024 1337 0.391130 AATTGGCGTCGCAAGCTCTA 60.391 50.000 20.50 0.00 34.52 2.43
1050 1363 1.799181 CGACTGGTGAGCTTGTATCCG 60.799 57.143 0.00 0.00 0.00 4.18
1108 1425 0.677731 TAGATGCCTTGCTTGCGCTT 60.678 50.000 9.73 0.00 36.97 4.68
1136 1453 3.670377 GCTGGGGGTGCGTGTTTC 61.670 66.667 0.00 0.00 0.00 2.78
1263 1581 4.097361 GGGCCCGGACAAGAGGAC 62.097 72.222 5.69 0.00 0.00 3.85
1391 1709 4.760047 CAAGGAGGGCGACGGTGG 62.760 72.222 0.00 0.00 0.00 4.61
1664 1994 2.890847 GATGCGGCAGTACGAGTGCT 62.891 60.000 9.25 0.00 43.82 4.40
1723 2053 1.065928 CTTCTACGCCGGCTTCGAT 59.934 57.895 26.68 7.07 35.61 3.59
2372 2768 3.533079 TACTGGTGGCACCTCCCGA 62.533 63.158 34.69 15.42 39.58 5.14
2603 3002 1.305297 ATCGACAGAGTGGCCAGGA 60.305 57.895 5.11 0.00 0.00 3.86
2604 3003 0.904865 ATCGACAGAGTGGCCAGGAA 60.905 55.000 5.11 0.00 0.00 3.36
2847 3255 2.159043 AGCCTGGTGTGATCTTCATACG 60.159 50.000 0.00 0.00 39.07 3.06
2854 3262 4.742167 GGTGTGATCTTCATACGTGAGATG 59.258 45.833 0.00 0.00 39.07 2.90
2855 3263 5.344066 GTGTGATCTTCATACGTGAGATGT 58.656 41.667 0.00 0.00 35.39 3.06
2856 3264 5.230936 GTGTGATCTTCATACGTGAGATGTG 59.769 44.000 0.00 0.00 35.39 3.21
2894 3316 6.668323 ACTAAACTGATGGATTCGTTGTTTG 58.332 36.000 7.93 3.19 31.78 2.93
2923 3345 1.278985 CAGGTACAGCCCTGTGAATCA 59.721 52.381 11.02 0.00 45.81 2.57
3011 3433 5.309638 TGAATTTACAACTCCCGACAATCA 58.690 37.500 0.00 0.00 0.00 2.57
3018 3440 4.158384 CAACTCCCGACAATCAATTTTCG 58.842 43.478 4.68 4.68 0.00 3.46
3024 3446 3.674423 CGACAATCAATTTTCGGAGAGC 58.326 45.455 3.89 0.00 38.43 4.09
3025 3447 3.674423 GACAATCAATTTTCGGAGAGCG 58.326 45.455 0.00 0.00 38.43 5.03
3026 3448 2.159517 ACAATCAATTTTCGGAGAGCGC 60.160 45.455 0.00 0.00 38.43 5.92
3027 3449 1.737838 ATCAATTTTCGGAGAGCGCA 58.262 45.000 11.47 0.00 38.43 6.09
3028 3450 1.737838 TCAATTTTCGGAGAGCGCAT 58.262 45.000 11.47 0.00 38.43 4.73
3029 3451 1.665679 TCAATTTTCGGAGAGCGCATC 59.334 47.619 11.47 7.20 38.43 3.91
3030 3452 1.017387 AATTTTCGGAGAGCGCATCC 58.983 50.000 18.91 18.91 38.43 3.51
3031 3453 0.815615 ATTTTCGGAGAGCGCATCCC 60.816 55.000 21.82 12.77 38.43 3.85
3032 3454 2.869503 TTTTCGGAGAGCGCATCCCC 62.870 60.000 21.82 10.79 38.43 4.81
3035 3457 4.292178 GGAGAGCGCATCCCCGAG 62.292 72.222 18.30 0.00 0.00 4.63
3036 3458 3.532155 GAGAGCGCATCCCCGAGT 61.532 66.667 11.47 0.00 0.00 4.18
3037 3459 3.077556 AGAGCGCATCCCCGAGTT 61.078 61.111 11.47 0.00 0.00 3.01
3038 3460 2.892425 GAGCGCATCCCCGAGTTG 60.892 66.667 11.47 0.00 0.00 3.16
3039 3461 4.473520 AGCGCATCCCCGAGTTGG 62.474 66.667 11.47 0.00 37.55 3.77
3040 3462 4.467084 GCGCATCCCCGAGTTGGA 62.467 66.667 0.30 0.00 42.00 3.53
3041 3463 2.202932 CGCATCCCCGAGTTGGAG 60.203 66.667 0.00 0.00 42.00 3.86
3042 3464 2.514824 GCATCCCCGAGTTGGAGC 60.515 66.667 0.00 0.00 42.00 4.70
3043 3465 3.036429 GCATCCCCGAGTTGGAGCT 62.036 63.158 0.00 0.00 42.00 4.09
3044 3466 1.153289 CATCCCCGAGTTGGAGCTG 60.153 63.158 0.00 0.00 42.00 4.24
3045 3467 2.370445 ATCCCCGAGTTGGAGCTGG 61.370 63.158 0.00 0.00 42.00 4.85
3046 3468 4.101448 CCCCGAGTTGGAGCTGGG 62.101 72.222 0.00 0.00 42.00 4.45
3047 3469 4.785453 CCCGAGTTGGAGCTGGGC 62.785 72.222 0.00 0.00 42.00 5.36
3048 3470 4.020617 CCGAGTTGGAGCTGGGCA 62.021 66.667 0.00 0.00 42.00 5.36
3049 3471 2.435586 CGAGTTGGAGCTGGGCAG 60.436 66.667 0.00 0.00 0.00 4.85
3059 3481 3.067091 CTGGGCAGCAGTGTCTCT 58.933 61.111 0.00 0.00 0.00 3.10
3060 3482 1.375652 CTGGGCAGCAGTGTCTCTG 60.376 63.158 0.00 0.00 46.12 3.35
3061 3483 1.824224 CTGGGCAGCAGTGTCTCTGA 61.824 60.000 6.09 0.00 46.27 3.27
3062 3484 1.079266 GGGCAGCAGTGTCTCTGAG 60.079 63.158 6.09 0.00 46.27 3.35
3063 3485 1.539560 GGGCAGCAGTGTCTCTGAGA 61.540 60.000 2.58 2.58 46.27 3.27
3064 3486 0.319728 GGCAGCAGTGTCTCTGAGAA 59.680 55.000 9.31 0.00 46.27 2.87
3065 3487 1.427435 GCAGCAGTGTCTCTGAGAAC 58.573 55.000 9.31 9.87 46.27 3.01
3066 3488 1.938926 GCAGCAGTGTCTCTGAGAACC 60.939 57.143 9.31 2.91 46.27 3.62
3067 3489 0.600557 AGCAGTGTCTCTGAGAACCG 59.399 55.000 9.31 4.30 46.27 4.44
3068 3490 0.389166 GCAGTGTCTCTGAGAACCGG 60.389 60.000 9.31 0.00 46.27 5.28
3069 3491 1.248486 CAGTGTCTCTGAGAACCGGA 58.752 55.000 9.46 0.00 46.27 5.14
3070 3492 1.821753 CAGTGTCTCTGAGAACCGGAT 59.178 52.381 9.46 0.00 46.27 4.18
3071 3493 2.096248 AGTGTCTCTGAGAACCGGATC 58.904 52.381 9.46 5.83 0.00 3.36
3072 3494 1.135333 GTGTCTCTGAGAACCGGATCC 59.865 57.143 9.46 0.00 0.00 3.36
3073 3495 1.006043 TGTCTCTGAGAACCGGATCCT 59.994 52.381 9.46 0.65 0.00 3.24
3074 3496 1.679153 GTCTCTGAGAACCGGATCCTC 59.321 57.143 9.46 11.90 0.00 3.71
3075 3497 1.566703 TCTCTGAGAACCGGATCCTCT 59.433 52.381 9.46 5.90 0.00 3.69
3076 3498 2.778270 TCTCTGAGAACCGGATCCTCTA 59.222 50.000 9.46 3.62 0.00 2.43
3077 3499 3.202373 TCTCTGAGAACCGGATCCTCTAA 59.798 47.826 9.46 0.00 0.00 2.10
3078 3500 3.288964 TCTGAGAACCGGATCCTCTAAC 58.711 50.000 9.46 0.00 0.00 2.34
3079 3501 3.024547 CTGAGAACCGGATCCTCTAACA 58.975 50.000 9.46 0.96 0.00 2.41
3080 3502 3.639094 CTGAGAACCGGATCCTCTAACAT 59.361 47.826 9.46 0.00 0.00 2.71
3081 3503 4.030913 TGAGAACCGGATCCTCTAACATT 58.969 43.478 9.46 0.00 0.00 2.71
3082 3504 4.141937 TGAGAACCGGATCCTCTAACATTG 60.142 45.833 9.46 0.00 0.00 2.82
3083 3505 4.030913 AGAACCGGATCCTCTAACATTGA 58.969 43.478 9.46 0.00 0.00 2.57
3084 3506 4.656112 AGAACCGGATCCTCTAACATTGAT 59.344 41.667 9.46 0.00 0.00 2.57
3085 3507 5.839063 AGAACCGGATCCTCTAACATTGATA 59.161 40.000 9.46 0.00 0.00 2.15
3086 3508 6.326583 AGAACCGGATCCTCTAACATTGATAA 59.673 38.462 9.46 0.00 0.00 1.75
3087 3509 6.102897 ACCGGATCCTCTAACATTGATAAG 57.897 41.667 9.46 0.00 0.00 1.73
3088 3510 5.012148 ACCGGATCCTCTAACATTGATAAGG 59.988 44.000 9.46 0.00 0.00 2.69
3089 3511 5.246203 CCGGATCCTCTAACATTGATAAGGA 59.754 44.000 10.75 0.00 37.33 3.36
3090 3512 6.239600 CCGGATCCTCTAACATTGATAAGGAA 60.240 42.308 10.75 0.00 36.56 3.36
3091 3513 7.217200 CGGATCCTCTAACATTGATAAGGAAA 58.783 38.462 10.75 0.00 36.56 3.13
3092 3514 7.386299 CGGATCCTCTAACATTGATAAGGAAAG 59.614 40.741 10.75 0.00 36.56 2.62
3093 3515 8.214364 GGATCCTCTAACATTGATAAGGAAAGT 58.786 37.037 3.84 0.00 36.56 2.66
3094 3516 9.620259 GATCCTCTAACATTGATAAGGAAAGTT 57.380 33.333 0.00 0.00 36.56 2.66
3303 3725 7.850193 ACTATCTATACTAACTACTCCCTCCG 58.150 42.308 0.00 0.00 0.00 4.63
3304 3726 6.700845 ATCTATACTAACTACTCCCTCCGT 57.299 41.667 0.00 0.00 0.00 4.69
3305 3727 6.107901 TCTATACTAACTACTCCCTCCGTC 57.892 45.833 0.00 0.00 0.00 4.79
3306 3728 2.433662 ACTAACTACTCCCTCCGTCC 57.566 55.000 0.00 0.00 0.00 4.79
3307 3729 1.921748 ACTAACTACTCCCTCCGTCCT 59.078 52.381 0.00 0.00 0.00 3.85
3308 3730 3.118531 ACTAACTACTCCCTCCGTCCTA 58.881 50.000 0.00 0.00 0.00 2.94
3309 3731 3.525199 ACTAACTACTCCCTCCGTCCTAA 59.475 47.826 0.00 0.00 0.00 2.69
3310 3732 3.463048 AACTACTCCCTCCGTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
3311 3733 3.463048 ACTACTCCCTCCGTCCTAAAA 57.537 47.619 0.00 0.00 0.00 1.52
3312 3734 3.991683 ACTACTCCCTCCGTCCTAAAAT 58.008 45.455 0.00 0.00 0.00 1.82
3313 3735 5.134725 ACTACTCCCTCCGTCCTAAAATA 57.865 43.478 0.00 0.00 0.00 1.40
3314 3736 5.713807 ACTACTCCCTCCGTCCTAAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
3315 3737 6.856757 ACTACTCCCTCCGTCCTAAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
3316 3738 7.300658 ACTACTCCCTCCGTCCTAAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
3317 3739 7.786464 ACTACTCCCTCCGTCCTAAAATATAAA 59.214 37.037 0.00 0.00 0.00 1.40
3318 3740 7.441903 ACTCCCTCCGTCCTAAAATATAAAA 57.558 36.000 0.00 0.00 0.00 1.52
3319 3741 7.864770 ACTCCCTCCGTCCTAAAATATAAAAA 58.135 34.615 0.00 0.00 0.00 1.94
3320 3742 8.500238 ACTCCCTCCGTCCTAAAATATAAAAAT 58.500 33.333 0.00 0.00 0.00 1.82
3321 3743 8.685838 TCCCTCCGTCCTAAAATATAAAAATG 57.314 34.615 0.00 0.00 0.00 2.32
3322 3744 8.276477 TCCCTCCGTCCTAAAATATAAAAATGT 58.724 33.333 0.00 0.00 0.00 2.71
3323 3745 8.909923 CCCTCCGTCCTAAAATATAAAAATGTT 58.090 33.333 0.00 0.00 0.00 2.71
3367 3789 8.356533 TCGAAAACGTTCTTATATTATGGGAC 57.643 34.615 0.00 0.00 0.00 4.46
3382 3804 3.028094 TGGGACAGATGGAGTACCTAC 57.972 52.381 0.00 0.00 40.82 3.18
3383 3805 2.585900 TGGGACAGATGGAGTACCTACT 59.414 50.000 0.00 0.00 40.82 2.57
3384 3806 3.789840 TGGGACAGATGGAGTACCTACTA 59.210 47.826 0.00 0.00 40.82 1.82
3385 3807 4.231195 TGGGACAGATGGAGTACCTACTAA 59.769 45.833 0.00 0.00 40.82 2.24
3386 3808 4.583907 GGGACAGATGGAGTACCTACTAAC 59.416 50.000 0.00 0.00 37.01 2.34
3387 3809 5.198965 GGACAGATGGAGTACCTACTAACA 58.801 45.833 0.00 0.00 36.50 2.41
3388 3810 5.655532 GGACAGATGGAGTACCTACTAACAA 59.344 44.000 0.00 0.00 36.50 2.83
3389 3811 6.405619 GGACAGATGGAGTACCTACTAACAAC 60.406 46.154 0.00 0.00 36.50 3.32
3390 3812 5.421374 ACAGATGGAGTACCTACTAACAACC 59.579 44.000 0.00 0.00 36.50 3.77
3391 3813 4.961099 AGATGGAGTACCTACTAACAACCC 59.039 45.833 0.00 0.00 36.50 4.11
3392 3814 3.444029 TGGAGTACCTACTAACAACCCC 58.556 50.000 0.00 0.00 36.50 4.95
3393 3815 3.078000 TGGAGTACCTACTAACAACCCCT 59.922 47.826 0.00 0.00 36.50 4.79
3394 3816 4.294702 TGGAGTACCTACTAACAACCCCTA 59.705 45.833 0.00 0.00 36.50 3.53
3395 3817 5.222526 TGGAGTACCTACTAACAACCCCTAA 60.223 44.000 0.00 0.00 36.50 2.69
3396 3818 5.127845 GGAGTACCTACTAACAACCCCTAAC 59.872 48.000 0.00 0.00 36.50 2.34
3397 3819 5.908590 AGTACCTACTAACAACCCCTAACT 58.091 41.667 0.00 0.00 34.13 2.24
3398 3820 6.326161 AGTACCTACTAACAACCCCTAACTT 58.674 40.000 0.00 0.00 34.13 2.66
3399 3821 6.789457 AGTACCTACTAACAACCCCTAACTTT 59.211 38.462 0.00 0.00 34.13 2.66
3400 3822 6.119240 ACCTACTAACAACCCCTAACTTTC 57.881 41.667 0.00 0.00 0.00 2.62
3401 3823 5.013495 ACCTACTAACAACCCCTAACTTTCC 59.987 44.000 0.00 0.00 0.00 3.13
3402 3824 5.250082 CCTACTAACAACCCCTAACTTTCCT 59.750 44.000 0.00 0.00 0.00 3.36
3403 3825 5.658198 ACTAACAACCCCTAACTTTCCTT 57.342 39.130 0.00 0.00 0.00 3.36
3404 3826 5.628130 ACTAACAACCCCTAACTTTCCTTC 58.372 41.667 0.00 0.00 0.00 3.46
3405 3827 4.808767 AACAACCCCTAACTTTCCTTCT 57.191 40.909 0.00 0.00 0.00 2.85
3406 3828 4.808767 ACAACCCCTAACTTTCCTTCTT 57.191 40.909 0.00 0.00 0.00 2.52
3407 3829 4.726583 ACAACCCCTAACTTTCCTTCTTC 58.273 43.478 0.00 0.00 0.00 2.87
3408 3830 4.167307 ACAACCCCTAACTTTCCTTCTTCA 59.833 41.667 0.00 0.00 0.00 3.02
3409 3831 5.162980 ACAACCCCTAACTTTCCTTCTTCAT 60.163 40.000 0.00 0.00 0.00 2.57
3410 3832 5.600669 ACCCCTAACTTTCCTTCTTCATT 57.399 39.130 0.00 0.00 0.00 2.57
3411 3833 5.965486 ACCCCTAACTTTCCTTCTTCATTT 58.035 37.500 0.00 0.00 0.00 2.32
3412 3834 6.382087 ACCCCTAACTTTCCTTCTTCATTTT 58.618 36.000 0.00 0.00 0.00 1.82
3413 3835 6.267699 ACCCCTAACTTTCCTTCTTCATTTTG 59.732 38.462 0.00 0.00 0.00 2.44
3414 3836 6.159293 CCCTAACTTTCCTTCTTCATTTTGC 58.841 40.000 0.00 0.00 0.00 3.68
3415 3837 6.239289 CCCTAACTTTCCTTCTTCATTTTGCA 60.239 38.462 0.00 0.00 0.00 4.08
3416 3838 6.642540 CCTAACTTTCCTTCTTCATTTTGCAC 59.357 38.462 0.00 0.00 0.00 4.57
3417 3839 5.859205 ACTTTCCTTCTTCATTTTGCACT 57.141 34.783 0.00 0.00 0.00 4.40
3418 3840 6.959639 ACTTTCCTTCTTCATTTTGCACTA 57.040 33.333 0.00 0.00 0.00 2.74
3419 3841 6.974965 ACTTTCCTTCTTCATTTTGCACTAG 58.025 36.000 0.00 0.00 0.00 2.57
3420 3842 5.964958 TTCCTTCTTCATTTTGCACTAGG 57.035 39.130 0.00 0.00 0.00 3.02
3421 3843 3.758554 TCCTTCTTCATTTTGCACTAGGC 59.241 43.478 0.00 0.00 45.13 3.93
3422 3844 3.760684 CCTTCTTCATTTTGCACTAGGCT 59.239 43.478 0.00 0.00 45.15 4.58
3423 3845 4.943705 CCTTCTTCATTTTGCACTAGGCTA 59.056 41.667 0.00 0.00 45.15 3.93
3424 3846 5.415701 CCTTCTTCATTTTGCACTAGGCTAA 59.584 40.000 0.00 0.00 45.15 3.09
3425 3847 5.880054 TCTTCATTTTGCACTAGGCTAAC 57.120 39.130 0.00 0.00 45.15 2.34
3426 3848 5.312895 TCTTCATTTTGCACTAGGCTAACA 58.687 37.500 0.00 0.00 45.15 2.41
3427 3849 5.767665 TCTTCATTTTGCACTAGGCTAACAA 59.232 36.000 0.00 0.00 45.15 2.83
3428 3850 6.434028 TCTTCATTTTGCACTAGGCTAACAAT 59.566 34.615 0.00 0.00 45.15 2.71
3429 3851 5.953183 TCATTTTGCACTAGGCTAACAATG 58.047 37.500 0.00 0.00 45.15 2.82
3430 3852 5.476599 TCATTTTGCACTAGGCTAACAATGT 59.523 36.000 0.00 0.00 45.15 2.71
3431 3853 6.657117 TCATTTTGCACTAGGCTAACAATGTA 59.343 34.615 0.00 0.00 45.15 2.29
3432 3854 6.494893 TTTTGCACTAGGCTAACAATGTAG 57.505 37.500 0.00 0.00 45.15 2.74
3433 3855 3.531538 TGCACTAGGCTAACAATGTAGC 58.468 45.455 0.00 6.38 44.87 3.58
3434 3856 3.055458 TGCACTAGGCTAACAATGTAGCA 60.055 43.478 13.74 0.72 46.98 3.49
3435 3857 4.130118 GCACTAGGCTAACAATGTAGCAT 58.870 43.478 13.74 10.49 46.98 3.79
3436 3858 5.163353 TGCACTAGGCTAACAATGTAGCATA 60.163 40.000 13.74 10.92 46.98 3.14
3440 3862 5.614324 AGGCTAACAATGTAGCATAGTGA 57.386 39.130 13.74 0.00 46.98 3.41
3441 3863 5.360591 AGGCTAACAATGTAGCATAGTGAC 58.639 41.667 13.74 0.00 46.98 3.67
3442 3864 5.129485 AGGCTAACAATGTAGCATAGTGACT 59.871 40.000 13.74 0.00 46.98 3.41
3443 3865 5.817816 GGCTAACAATGTAGCATAGTGACTT 59.182 40.000 13.74 0.00 46.98 3.01
3444 3866 6.316390 GGCTAACAATGTAGCATAGTGACTTT 59.684 38.462 13.74 0.00 46.98 2.66
3445 3867 7.402640 GCTAACAATGTAGCATAGTGACTTTC 58.597 38.462 0.00 0.00 44.94 2.62
3446 3868 6.743575 AACAATGTAGCATAGTGACTTTCC 57.256 37.500 0.00 0.00 0.00 3.13
3447 3869 6.054860 ACAATGTAGCATAGTGACTTTCCT 57.945 37.500 0.00 0.00 0.00 3.36
3448 3870 6.476378 ACAATGTAGCATAGTGACTTTCCTT 58.524 36.000 0.00 0.00 0.00 3.36
3449 3871 6.595716 ACAATGTAGCATAGTGACTTTCCTTC 59.404 38.462 0.00 0.00 0.00 3.46
3450 3872 6.552445 ATGTAGCATAGTGACTTTCCTTCT 57.448 37.500 0.00 0.00 0.00 2.85
3451 3873 5.967088 TGTAGCATAGTGACTTTCCTTCTC 58.033 41.667 0.00 0.00 0.00 2.87
3452 3874 5.480422 TGTAGCATAGTGACTTTCCTTCTCA 59.520 40.000 0.00 0.00 0.00 3.27
3453 3875 5.489792 AGCATAGTGACTTTCCTTCTCAA 57.510 39.130 0.00 0.00 0.00 3.02
3454 3876 6.059787 AGCATAGTGACTTTCCTTCTCAAT 57.940 37.500 0.00 0.00 0.00 2.57
3455 3877 5.879223 AGCATAGTGACTTTCCTTCTCAATG 59.121 40.000 0.00 0.00 0.00 2.82
3456 3878 5.645497 GCATAGTGACTTTCCTTCTCAATGT 59.355 40.000 0.00 0.00 0.00 2.71
3457 3879 6.150140 GCATAGTGACTTTCCTTCTCAATGTT 59.850 38.462 0.00 0.00 0.00 2.71
3458 3880 7.334421 GCATAGTGACTTTCCTTCTCAATGTTA 59.666 37.037 0.00 0.00 0.00 2.41
3459 3881 8.877779 CATAGTGACTTTCCTTCTCAATGTTAG 58.122 37.037 0.00 0.00 0.00 2.34
3460 3882 7.067496 AGTGACTTTCCTTCTCAATGTTAGA 57.933 36.000 0.00 0.00 0.00 2.10
3461 3883 7.158021 AGTGACTTTCCTTCTCAATGTTAGAG 58.842 38.462 0.00 0.00 34.42 2.43
3462 3884 6.370166 GTGACTTTCCTTCTCAATGTTAGAGG 59.630 42.308 0.00 0.00 33.92 3.69
3463 3885 6.270000 TGACTTTCCTTCTCAATGTTAGAGGA 59.730 38.462 0.00 0.00 33.92 3.71
3464 3886 7.038017 TGACTTTCCTTCTCAATGTTAGAGGAT 60.038 37.037 0.00 0.00 33.92 3.24
3465 3887 7.334858 ACTTTCCTTCTCAATGTTAGAGGATC 58.665 38.462 0.00 0.00 33.92 3.36
3466 3888 5.878406 TCCTTCTCAATGTTAGAGGATCC 57.122 43.478 2.48 2.48 33.66 3.36
3467 3889 4.342378 TCCTTCTCAATGTTAGAGGATCCG 59.658 45.833 5.98 0.00 33.66 4.18
3468 3890 4.502259 CCTTCTCAATGTTAGAGGATCCGG 60.502 50.000 5.98 0.00 33.66 5.14
3469 3891 3.643237 TCTCAATGTTAGAGGATCCGGT 58.357 45.455 5.98 0.00 33.66 5.28
3470 3892 4.030913 TCTCAATGTTAGAGGATCCGGTT 58.969 43.478 5.98 0.00 33.66 4.44
3471 3893 4.099573 TCTCAATGTTAGAGGATCCGGTTC 59.900 45.833 5.98 1.67 33.66 3.62
3472 3894 3.134081 TCAATGTTAGAGGATCCGGTTCC 59.866 47.826 22.05 22.05 33.66 3.62
3473 3895 1.108776 TGTTAGAGGATCCGGTTCCG 58.891 55.000 22.98 4.08 40.94 4.30
3474 3896 1.109609 GTTAGAGGATCCGGTTCCGT 58.890 55.000 22.98 17.37 40.94 4.69
3475 3897 1.108776 TTAGAGGATCCGGTTCCGTG 58.891 55.000 22.98 2.43 40.94 4.94
3476 3898 0.033796 TAGAGGATCCGGTTCCGTGT 60.034 55.000 22.98 14.90 40.94 4.49
3477 3899 1.141234 GAGGATCCGGTTCCGTGTC 59.859 63.158 22.98 13.34 40.94 3.67
3478 3900 2.186125 GGATCCGGTTCCGTGTCC 59.814 66.667 15.75 12.14 0.00 4.02
3479 3901 2.186125 GATCCGGTTCCGTGTCCC 59.814 66.667 0.00 0.00 0.00 4.46
3480 3902 2.284405 ATCCGGTTCCGTGTCCCT 60.284 61.111 0.00 0.00 0.00 4.20
3481 3903 2.573609 GATCCGGTTCCGTGTCCCTG 62.574 65.000 0.00 0.00 0.00 4.45
3482 3904 3.307906 CCGGTTCCGTGTCCCTGA 61.308 66.667 10.36 0.00 0.00 3.86
3483 3905 2.656069 CCGGTTCCGTGTCCCTGAT 61.656 63.158 10.36 0.00 0.00 2.90
3484 3906 1.447838 CGGTTCCGTGTCCCTGATG 60.448 63.158 2.82 0.00 0.00 3.07
3485 3907 1.884075 CGGTTCCGTGTCCCTGATGA 61.884 60.000 2.82 0.00 0.00 2.92
3486 3908 0.391263 GGTTCCGTGTCCCTGATGAC 60.391 60.000 0.00 0.00 35.77 3.06
3487 3909 0.736325 GTTCCGTGTCCCTGATGACG 60.736 60.000 0.00 0.00 38.11 4.35
3541 3963 0.884259 TGGATGCGGTGTTGTCTGTG 60.884 55.000 0.00 0.00 0.00 3.66
3605 4027 3.777910 GGAGAAGCGGCGGGGTTA 61.778 66.667 9.78 0.00 36.25 2.85
3616 4038 2.383601 CGGGGTTAAGGGGATGGCT 61.384 63.158 0.00 0.00 0.00 4.75
3658 4080 1.221021 GGTGACGGCTTAAGGAGGG 59.779 63.158 4.29 0.00 0.00 4.30
3665 4087 3.407967 CTTAAGGAGGGCGGGGCA 61.408 66.667 0.00 0.00 0.00 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 6.137794 TCGGATCTTTTCTACAGCTTCTAG 57.862 41.667 0.00 0.00 0.00 2.43
16 17 4.081586 AGGGTCTGTTCGGATCTTTTCTAC 60.082 45.833 0.00 0.00 0.00 2.59
40 41 4.336433 CGGTTGCATCAATCAGGAATAACT 59.664 41.667 0.00 0.00 0.00 2.24
41 42 4.335315 TCGGTTGCATCAATCAGGAATAAC 59.665 41.667 0.00 0.00 0.00 1.89
53 55 2.083774 GATTCCTTGTCGGTTGCATCA 58.916 47.619 0.00 0.00 0.00 3.07
84 86 3.890756 TGTTCACAATGCAGAGTTTCCAT 59.109 39.130 0.00 0.00 0.00 3.41
112 114 1.523758 GCACCTGTCGTTCATTCCTT 58.476 50.000 0.00 0.00 0.00 3.36
184 188 1.643880 GCGCCGGCTACTAGTTTTAA 58.356 50.000 26.68 0.00 35.83 1.52
185 189 0.179103 GGCGCCGGCTACTAGTTTTA 60.179 55.000 26.68 0.00 39.81 1.52
235 240 1.544825 CCTGGTGTCCATGGTCGACT 61.545 60.000 16.46 0.00 30.82 4.18
241 246 0.323633 TCATTGCCTGGTGTCCATGG 60.324 55.000 4.97 4.97 30.82 3.66
349 354 9.401058 TCTCCAAGTTTGTATACTACTACTACC 57.599 37.037 4.17 0.00 0.00 3.18
411 423 2.603652 GCGGTGTACATTTGGTCAACAC 60.604 50.000 0.00 0.00 39.72 3.32
465 477 2.002586 TCGGCTGTACTACACTCGTAC 58.997 52.381 0.00 0.00 38.13 3.67
466 478 2.002586 GTCGGCTGTACTACACTCGTA 58.997 52.381 0.00 0.00 0.00 3.43
467 479 0.801251 GTCGGCTGTACTACACTCGT 59.199 55.000 0.00 0.00 0.00 4.18
468 480 0.247576 CGTCGGCTGTACTACACTCG 60.248 60.000 0.00 0.00 0.00 4.18
469 481 0.522915 GCGTCGGCTGTACTACACTC 60.523 60.000 0.00 0.00 35.83 3.51
470 482 1.505353 GCGTCGGCTGTACTACACT 59.495 57.895 0.00 0.00 35.83 3.55
471 483 4.068302 GCGTCGGCTGTACTACAC 57.932 61.111 0.00 0.00 35.83 2.90
481 495 1.429148 AATTTGGATCGAGCGTCGGC 61.429 55.000 0.00 0.00 40.88 5.54
508 522 2.065799 GAGAGAGAGAGGGGGAGAGAT 58.934 57.143 0.00 0.00 0.00 2.75
515 529 1.566211 TGCAAAGAGAGAGAGAGGGG 58.434 55.000 0.00 0.00 0.00 4.79
526 541 1.471684 GCTTCCTCCACATGCAAAGAG 59.528 52.381 0.00 0.00 0.00 2.85
634 923 0.650512 AGCGTTGACACTTTGACACG 59.349 50.000 0.00 0.00 0.00 4.49
640 929 1.351707 CGTGCAGCGTTGACACTTT 59.648 52.632 18.73 0.00 32.63 2.66
729 1028 6.001460 TGCTAGTGGTTGTTTTACTGCTAAT 58.999 36.000 0.00 0.00 0.00 1.73
867 1171 2.568090 GACGTCGCCGGGAAGTTA 59.432 61.111 2.18 0.00 37.49 2.24
974 1285 4.493350 CGCGGCGTACAACATATATAGTAC 59.507 45.833 15.36 10.19 34.88 2.73
977 1288 2.850060 CCGCGGCGTACAACATATATAG 59.150 50.000 22.00 0.00 0.00 1.31
1024 1337 1.135373 CAAGCTCACCAGTCGTACGAT 60.135 52.381 22.57 7.79 0.00 3.73
1050 1363 2.135933 GGTAAGCGGCATACTGACATC 58.864 52.381 14.19 0.00 0.00 3.06
1085 1402 1.303309 GCAAGCAAGGCATCTACGAT 58.697 50.000 0.00 0.00 0.00 3.73
1136 1453 5.863935 CCGAAAAGAAGAAAAATGGCTAAGG 59.136 40.000 0.00 0.00 0.00 2.69
1664 1994 3.998672 GGCGGAGTGGGTCGTCAA 61.999 66.667 0.00 0.00 0.00 3.18
1723 2053 1.290955 CCAGTGGTAGCGGACGAAA 59.709 57.895 0.00 0.00 0.00 3.46
1780 2110 1.593787 CATGAGCCAGTCCGTGAGT 59.406 57.895 0.00 0.00 0.00 3.41
2077 2431 1.226603 GCCGACGAACGCTATCAGT 60.227 57.895 0.00 0.00 41.07 3.41
2372 2768 1.494824 GAGTACGTTTCGTGGTGCTT 58.505 50.000 0.00 0.00 41.39 3.91
2635 3034 0.247460 TCTCCATGGCGTGACTGAAG 59.753 55.000 6.96 0.00 0.00 3.02
2746 3145 5.565592 TTGAGTGGCACATATCACAAATC 57.434 39.130 21.41 4.84 44.52 2.17
2812 3211 4.019681 ACACCAGGCTAGCACTGTAATAAA 60.020 41.667 23.30 0.00 34.16 1.40
2817 3216 0.608130 CACACCAGGCTAGCACTGTA 59.392 55.000 23.30 0.00 34.16 2.74
2828 3227 3.119137 TCACGTATGAAGATCACACCAGG 60.119 47.826 0.00 0.00 0.00 4.45
2829 3228 4.108336 CTCACGTATGAAGATCACACCAG 58.892 47.826 0.00 0.00 33.30 4.00
2847 3255 3.917988 TCAGACACATCACACATCTCAC 58.082 45.455 0.00 0.00 0.00 3.51
2854 3262 5.403766 CAGTTTAGTCTCAGACACATCACAC 59.596 44.000 7.77 0.00 34.60 3.82
2855 3263 5.301805 TCAGTTTAGTCTCAGACACATCACA 59.698 40.000 7.77 0.00 34.60 3.58
2856 3264 5.773575 TCAGTTTAGTCTCAGACACATCAC 58.226 41.667 7.77 0.00 34.60 3.06
2894 3316 1.406205 GGGCTGTACCTGAAGCTTCTC 60.406 57.143 26.09 12.10 39.46 2.87
2923 3345 5.282055 TGAAATCAGTTCAGTCAGTCTGT 57.718 39.130 0.00 0.00 41.47 3.41
2965 3387 9.703892 TTCAGTCAATTTACCAATAACAAATGG 57.296 29.630 0.00 0.00 42.60 3.16
3003 3425 3.674423 GCTCTCCGAAAATTGATTGTCG 58.326 45.455 8.90 8.90 44.84 4.35
3011 3433 1.017387 GGATGCGCTCTCCGAAAATT 58.983 50.000 9.73 0.00 40.02 1.82
3018 3440 4.292178 CTCGGGGATGCGCTCTCC 62.292 72.222 18.01 18.01 41.71 3.71
3019 3441 3.082579 AACTCGGGGATGCGCTCTC 62.083 63.158 9.73 5.38 0.00 3.20
3020 3442 3.077556 AACTCGGGGATGCGCTCT 61.078 61.111 9.73 0.00 0.00 4.09
3021 3443 2.892425 CAACTCGGGGATGCGCTC 60.892 66.667 9.73 3.37 0.00 5.03
3022 3444 4.473520 CCAACTCGGGGATGCGCT 62.474 66.667 9.73 0.00 0.00 5.92
3023 3445 4.467084 TCCAACTCGGGGATGCGC 62.467 66.667 0.00 0.00 34.36 6.09
3024 3446 2.202932 CTCCAACTCGGGGATGCG 60.203 66.667 0.00 0.00 37.51 4.73
3025 3447 2.514824 GCTCCAACTCGGGGATGC 60.515 66.667 0.00 0.00 37.51 3.91
3026 3448 3.313874 AGCTCCAACTCGGGGATG 58.686 61.111 0.00 0.00 37.51 3.51
3027 3449 2.370445 CCAGCTCCAACTCGGGGAT 61.370 63.158 0.00 0.00 37.51 3.85
3028 3450 3.003173 CCAGCTCCAACTCGGGGA 61.003 66.667 0.00 0.00 37.51 4.81
3029 3451 4.101448 CCCAGCTCCAACTCGGGG 62.101 72.222 0.00 0.00 38.93 5.73
3030 3452 4.785453 GCCCAGCTCCAACTCGGG 62.785 72.222 0.00 0.00 40.11 5.14
3031 3453 3.965539 CTGCCCAGCTCCAACTCGG 62.966 68.421 0.00 0.00 0.00 4.63
3032 3454 2.435586 CTGCCCAGCTCCAACTCG 60.436 66.667 0.00 0.00 0.00 4.18
3042 3464 1.824224 TCAGAGACACTGCTGCCCAG 61.824 60.000 0.00 0.36 45.38 4.45
3043 3465 1.824224 CTCAGAGACACTGCTGCCCA 61.824 60.000 0.00 0.00 45.38 5.36
3044 3466 1.079266 CTCAGAGACACTGCTGCCC 60.079 63.158 0.00 0.00 45.38 5.36
3045 3467 0.319728 TTCTCAGAGACACTGCTGCC 59.680 55.000 0.00 0.00 45.38 4.85
3046 3468 1.427435 GTTCTCAGAGACACTGCTGC 58.573 55.000 0.00 0.00 45.38 5.25
3047 3469 1.668337 CGGTTCTCAGAGACACTGCTG 60.668 57.143 0.00 0.00 45.38 4.41
3048 3470 0.600557 CGGTTCTCAGAGACACTGCT 59.399 55.000 0.00 0.00 45.38 4.24
3049 3471 0.389166 CCGGTTCTCAGAGACACTGC 60.389 60.000 0.00 0.00 45.38 4.40
3050 3472 1.248486 TCCGGTTCTCAGAGACACTG 58.752 55.000 0.00 7.05 46.97 3.66
3051 3473 2.096248 GATCCGGTTCTCAGAGACACT 58.904 52.381 0.00 0.00 0.00 3.55
3052 3474 1.135333 GGATCCGGTTCTCAGAGACAC 59.865 57.143 12.19 2.18 0.00 3.67
3053 3475 1.006043 AGGATCCGGTTCTCAGAGACA 59.994 52.381 12.19 0.00 0.00 3.41
3054 3476 1.679153 GAGGATCCGGTTCTCAGAGAC 59.321 57.143 12.19 0.00 0.00 3.36
3055 3477 1.566703 AGAGGATCCGGTTCTCAGAGA 59.433 52.381 12.19 0.00 33.66 3.10
3056 3478 2.065899 AGAGGATCCGGTTCTCAGAG 57.934 55.000 12.19 0.00 33.66 3.35
3057 3479 3.288964 GTTAGAGGATCCGGTTCTCAGA 58.711 50.000 12.19 3.12 33.66 3.27
3058 3480 3.024547 TGTTAGAGGATCCGGTTCTCAG 58.975 50.000 12.19 0.00 33.66 3.35
3059 3481 3.095912 TGTTAGAGGATCCGGTTCTCA 57.904 47.619 12.19 0.43 33.66 3.27
3060 3482 4.099573 TCAATGTTAGAGGATCCGGTTCTC 59.900 45.833 12.19 11.82 33.66 2.87
3061 3483 4.030913 TCAATGTTAGAGGATCCGGTTCT 58.969 43.478 12.19 6.67 33.66 3.01
3062 3484 4.402056 TCAATGTTAGAGGATCCGGTTC 57.598 45.455 5.98 1.67 33.66 3.62
3063 3485 6.464465 CCTTATCAATGTTAGAGGATCCGGTT 60.464 42.308 5.98 0.00 33.66 4.44
3064 3486 5.012148 CCTTATCAATGTTAGAGGATCCGGT 59.988 44.000 5.98 0.00 33.66 5.28
3065 3487 5.246203 TCCTTATCAATGTTAGAGGATCCGG 59.754 44.000 5.98 0.00 33.66 5.14
3066 3488 6.346477 TCCTTATCAATGTTAGAGGATCCG 57.654 41.667 5.98 0.00 33.66 4.18
3067 3489 8.214364 ACTTTCCTTATCAATGTTAGAGGATCC 58.786 37.037 2.48 2.48 33.64 3.36
3068 3490 9.620259 AACTTTCCTTATCAATGTTAGAGGATC 57.380 33.333 0.00 0.00 33.64 3.36
3277 3699 8.320617 CGGAGGGAGTAGTTAGTATAGATAGTT 58.679 40.741 0.00 0.00 0.00 2.24
3278 3700 7.457535 ACGGAGGGAGTAGTTAGTATAGATAGT 59.542 40.741 0.00 0.00 0.00 2.12
3279 3701 7.850193 ACGGAGGGAGTAGTTAGTATAGATAG 58.150 42.308 0.00 0.00 0.00 2.08
3280 3702 7.093112 GGACGGAGGGAGTAGTTAGTATAGATA 60.093 44.444 0.00 0.00 0.00 1.98
3281 3703 6.296374 GGACGGAGGGAGTAGTTAGTATAGAT 60.296 46.154 0.00 0.00 0.00 1.98
3282 3704 5.012561 GGACGGAGGGAGTAGTTAGTATAGA 59.987 48.000 0.00 0.00 0.00 1.98
3283 3705 5.012975 AGGACGGAGGGAGTAGTTAGTATAG 59.987 48.000 0.00 0.00 0.00 1.31
3284 3706 4.910304 AGGACGGAGGGAGTAGTTAGTATA 59.090 45.833 0.00 0.00 0.00 1.47
3285 3707 3.721050 AGGACGGAGGGAGTAGTTAGTAT 59.279 47.826 0.00 0.00 0.00 2.12
3286 3708 3.118531 AGGACGGAGGGAGTAGTTAGTA 58.881 50.000 0.00 0.00 0.00 1.82
3287 3709 1.921748 AGGACGGAGGGAGTAGTTAGT 59.078 52.381 0.00 0.00 0.00 2.24
3288 3710 2.732844 AGGACGGAGGGAGTAGTTAG 57.267 55.000 0.00 0.00 0.00 2.34
3289 3711 4.591321 TTTAGGACGGAGGGAGTAGTTA 57.409 45.455 0.00 0.00 0.00 2.24
3290 3712 3.463048 TTTAGGACGGAGGGAGTAGTT 57.537 47.619 0.00 0.00 0.00 2.24
3291 3713 3.463048 TTTTAGGACGGAGGGAGTAGT 57.537 47.619 0.00 0.00 0.00 2.73
3292 3714 7.771927 TTATATTTTAGGACGGAGGGAGTAG 57.228 40.000 0.00 0.00 0.00 2.57
3293 3715 8.551682 TTTTATATTTTAGGACGGAGGGAGTA 57.448 34.615 0.00 0.00 0.00 2.59
3294 3716 7.441903 TTTTATATTTTAGGACGGAGGGAGT 57.558 36.000 0.00 0.00 0.00 3.85
3295 3717 8.784043 CATTTTTATATTTTAGGACGGAGGGAG 58.216 37.037 0.00 0.00 0.00 4.30
3296 3718 8.276477 ACATTTTTATATTTTAGGACGGAGGGA 58.724 33.333 0.00 0.00 0.00 4.20
3297 3719 8.459911 ACATTTTTATATTTTAGGACGGAGGG 57.540 34.615 0.00 0.00 0.00 4.30
3324 3746 9.494479 CGTTTTCGATACTATACTAGTGTCAAA 57.506 33.333 5.39 7.63 44.27 2.69
3325 3747 8.668353 ACGTTTTCGATACTATACTAGTGTCAA 58.332 33.333 5.39 0.00 44.27 3.18
3326 3748 8.201554 ACGTTTTCGATACTATACTAGTGTCA 57.798 34.615 5.39 0.00 44.27 3.58
3344 3766 9.321562 TCTGTCCCATAATATAAGAACGTTTTC 57.678 33.333 0.46 0.00 0.00 2.29
3345 3767 9.847224 ATCTGTCCCATAATATAAGAACGTTTT 57.153 29.630 0.46 0.00 0.00 2.43
3346 3768 9.273016 CATCTGTCCCATAATATAAGAACGTTT 57.727 33.333 0.46 0.00 0.00 3.60
3347 3769 7.878127 CCATCTGTCCCATAATATAAGAACGTT 59.122 37.037 0.00 0.00 0.00 3.99
3348 3770 7.234782 TCCATCTGTCCCATAATATAAGAACGT 59.765 37.037 0.00 0.00 0.00 3.99
3349 3771 7.611770 TCCATCTGTCCCATAATATAAGAACG 58.388 38.462 0.00 0.00 0.00 3.95
3350 3772 8.598041 ACTCCATCTGTCCCATAATATAAGAAC 58.402 37.037 0.00 0.00 0.00 3.01
3351 3773 8.742125 ACTCCATCTGTCCCATAATATAAGAA 57.258 34.615 0.00 0.00 0.00 2.52
3352 3774 9.256228 GTACTCCATCTGTCCCATAATATAAGA 57.744 37.037 0.00 0.00 0.00 2.10
3353 3775 8.478877 GGTACTCCATCTGTCCCATAATATAAG 58.521 40.741 0.00 0.00 0.00 1.73
3354 3776 8.184249 AGGTACTCCATCTGTCCCATAATATAA 58.816 37.037 0.00 0.00 35.89 0.98
3355 3777 7.719424 AGGTACTCCATCTGTCCCATAATATA 58.281 38.462 0.00 0.00 35.89 0.86
3356 3778 6.575411 AGGTACTCCATCTGTCCCATAATAT 58.425 40.000 0.00 0.00 35.89 1.28
3357 3779 5.977533 AGGTACTCCATCTGTCCCATAATA 58.022 41.667 0.00 0.00 35.89 0.98
3358 3780 4.832492 AGGTACTCCATCTGTCCCATAAT 58.168 43.478 0.00 0.00 35.89 1.28
3359 3781 4.280789 AGGTACTCCATCTGTCCCATAA 57.719 45.455 0.00 0.00 35.89 1.90
3360 3782 3.993658 AGGTACTCCATCTGTCCCATA 57.006 47.619 0.00 0.00 35.89 2.74
3361 3783 2.877154 AGGTACTCCATCTGTCCCAT 57.123 50.000 0.00 0.00 35.89 4.00
3362 3784 2.585900 AGTAGGTACTCCATCTGTCCCA 59.414 50.000 0.00 0.00 41.75 4.37
3363 3785 3.315880 AGTAGGTACTCCATCTGTCCC 57.684 52.381 0.00 0.00 41.75 4.46
3364 3786 5.198965 TGTTAGTAGGTACTCCATCTGTCC 58.801 45.833 0.00 0.00 41.75 4.02
3365 3787 6.405619 GGTTGTTAGTAGGTACTCCATCTGTC 60.406 46.154 0.00 0.00 41.75 3.51
3366 3788 5.421374 GGTTGTTAGTAGGTACTCCATCTGT 59.579 44.000 0.00 0.00 41.75 3.41
3367 3789 5.163437 GGGTTGTTAGTAGGTACTCCATCTG 60.163 48.000 0.00 0.00 41.75 2.90
3368 3790 4.961099 GGGTTGTTAGTAGGTACTCCATCT 59.039 45.833 0.00 0.00 41.75 2.90
3369 3791 4.100653 GGGGTTGTTAGTAGGTACTCCATC 59.899 50.000 0.00 0.00 41.75 3.51
3370 3792 4.035814 GGGGTTGTTAGTAGGTACTCCAT 58.964 47.826 0.00 0.00 41.75 3.41
3371 3793 3.078000 AGGGGTTGTTAGTAGGTACTCCA 59.922 47.826 0.00 0.00 41.75 3.86
3372 3794 3.717576 AGGGGTTGTTAGTAGGTACTCC 58.282 50.000 0.00 0.00 41.75 3.85
3373 3795 5.954752 AGTTAGGGGTTGTTAGTAGGTACTC 59.045 44.000 0.00 0.00 41.75 2.59
3374 3796 5.908590 AGTTAGGGGTTGTTAGTAGGTACT 58.091 41.667 0.00 0.00 46.37 2.73
3375 3797 6.611613 AAGTTAGGGGTTGTTAGTAGGTAC 57.388 41.667 0.00 0.00 0.00 3.34
3376 3798 6.213397 GGAAAGTTAGGGGTTGTTAGTAGGTA 59.787 42.308 0.00 0.00 0.00 3.08
3377 3799 5.013495 GGAAAGTTAGGGGTTGTTAGTAGGT 59.987 44.000 0.00 0.00 0.00 3.08
3378 3800 5.250082 AGGAAAGTTAGGGGTTGTTAGTAGG 59.750 44.000 0.00 0.00 0.00 3.18
3379 3801 6.370186 AGGAAAGTTAGGGGTTGTTAGTAG 57.630 41.667 0.00 0.00 0.00 2.57
3380 3802 6.559921 AGAAGGAAAGTTAGGGGTTGTTAGTA 59.440 38.462 0.00 0.00 0.00 1.82
3381 3803 5.371769 AGAAGGAAAGTTAGGGGTTGTTAGT 59.628 40.000 0.00 0.00 0.00 2.24
3382 3804 5.877491 AGAAGGAAAGTTAGGGGTTGTTAG 58.123 41.667 0.00 0.00 0.00 2.34
3383 3805 5.917545 AGAAGGAAAGTTAGGGGTTGTTA 57.082 39.130 0.00 0.00 0.00 2.41
3384 3806 4.808767 AGAAGGAAAGTTAGGGGTTGTT 57.191 40.909 0.00 0.00 0.00 2.83
3385 3807 4.167307 TGAAGAAGGAAAGTTAGGGGTTGT 59.833 41.667 0.00 0.00 0.00 3.32
3386 3808 4.725490 TGAAGAAGGAAAGTTAGGGGTTG 58.275 43.478 0.00 0.00 0.00 3.77
3387 3809 5.600669 ATGAAGAAGGAAAGTTAGGGGTT 57.399 39.130 0.00 0.00 0.00 4.11
3388 3810 5.600669 AATGAAGAAGGAAAGTTAGGGGT 57.399 39.130 0.00 0.00 0.00 4.95
3389 3811 6.691508 CAAAATGAAGAAGGAAAGTTAGGGG 58.308 40.000 0.00 0.00 0.00 4.79
3390 3812 6.159293 GCAAAATGAAGAAGGAAAGTTAGGG 58.841 40.000 0.00 0.00 0.00 3.53
3391 3813 6.642540 GTGCAAAATGAAGAAGGAAAGTTAGG 59.357 38.462 0.00 0.00 0.00 2.69
3392 3814 7.428826 AGTGCAAAATGAAGAAGGAAAGTTAG 58.571 34.615 0.00 0.00 0.00 2.34
3393 3815 7.346751 AGTGCAAAATGAAGAAGGAAAGTTA 57.653 32.000 0.00 0.00 0.00 2.24
3394 3816 6.225981 AGTGCAAAATGAAGAAGGAAAGTT 57.774 33.333 0.00 0.00 0.00 2.66
3395 3817 5.859205 AGTGCAAAATGAAGAAGGAAAGT 57.141 34.783 0.00 0.00 0.00 2.66
3396 3818 6.385033 CCTAGTGCAAAATGAAGAAGGAAAG 58.615 40.000 0.00 0.00 0.00 2.62
3397 3819 5.278957 GCCTAGTGCAAAATGAAGAAGGAAA 60.279 40.000 0.00 0.00 40.77 3.13
3398 3820 4.218417 GCCTAGTGCAAAATGAAGAAGGAA 59.782 41.667 0.00 0.00 40.77 3.36
3399 3821 3.758554 GCCTAGTGCAAAATGAAGAAGGA 59.241 43.478 0.00 0.00 40.77 3.36
3400 3822 3.760684 AGCCTAGTGCAAAATGAAGAAGG 59.239 43.478 0.00 0.00 44.83 3.46
3401 3823 6.072508 TGTTAGCCTAGTGCAAAATGAAGAAG 60.073 38.462 0.00 0.00 44.83 2.85
3402 3824 5.767665 TGTTAGCCTAGTGCAAAATGAAGAA 59.232 36.000 0.00 0.00 44.83 2.52
3403 3825 5.312895 TGTTAGCCTAGTGCAAAATGAAGA 58.687 37.500 0.00 0.00 44.83 2.87
3404 3826 5.627499 TGTTAGCCTAGTGCAAAATGAAG 57.373 39.130 0.00 0.00 44.83 3.02
3405 3827 6.015519 ACATTGTTAGCCTAGTGCAAAATGAA 60.016 34.615 16.99 7.18 44.83 2.57
3406 3828 5.476599 ACATTGTTAGCCTAGTGCAAAATGA 59.523 36.000 16.99 4.68 44.83 2.57
3407 3829 5.713025 ACATTGTTAGCCTAGTGCAAAATG 58.287 37.500 0.00 10.25 44.83 2.32
3408 3830 5.982890 ACATTGTTAGCCTAGTGCAAAAT 57.017 34.783 0.00 0.00 44.83 1.82
3409 3831 5.106317 GCTACATTGTTAGCCTAGTGCAAAA 60.106 40.000 0.00 0.00 44.83 2.44
3410 3832 4.394920 GCTACATTGTTAGCCTAGTGCAAA 59.605 41.667 0.00 0.00 44.83 3.68
3411 3833 3.938963 GCTACATTGTTAGCCTAGTGCAA 59.061 43.478 0.00 0.00 44.83 4.08
3412 3834 3.055458 TGCTACATTGTTAGCCTAGTGCA 60.055 43.478 12.59 0.00 44.83 4.57
3413 3835 3.531538 TGCTACATTGTTAGCCTAGTGC 58.468 45.455 12.59 0.00 38.48 4.40
3414 3836 6.516718 ACTATGCTACATTGTTAGCCTAGTG 58.483 40.000 21.09 9.36 43.79 2.74
3415 3837 6.323996 TCACTATGCTACATTGTTAGCCTAGT 59.676 38.462 18.75 18.75 45.19 2.57
3416 3838 6.642950 GTCACTATGCTACATTGTTAGCCTAG 59.357 42.308 18.00 18.00 40.75 3.02
3417 3839 6.323996 AGTCACTATGCTACATTGTTAGCCTA 59.676 38.462 12.59 8.37 38.48 3.93
3418 3840 5.129485 AGTCACTATGCTACATTGTTAGCCT 59.871 40.000 12.59 7.85 38.48 4.58
3419 3841 5.360591 AGTCACTATGCTACATTGTTAGCC 58.639 41.667 12.59 1.06 38.48 3.93
3420 3842 6.910536 AAGTCACTATGCTACATTGTTAGC 57.089 37.500 0.00 3.24 39.61 3.09
3421 3843 7.766278 AGGAAAGTCACTATGCTACATTGTTAG 59.234 37.037 0.00 0.00 0.00 2.34
3422 3844 7.620880 AGGAAAGTCACTATGCTACATTGTTA 58.379 34.615 0.00 0.00 0.00 2.41
3423 3845 6.476378 AGGAAAGTCACTATGCTACATTGTT 58.524 36.000 0.00 0.00 0.00 2.83
3424 3846 6.054860 AGGAAAGTCACTATGCTACATTGT 57.945 37.500 0.00 0.00 0.00 2.71
3425 3847 6.820656 AGAAGGAAAGTCACTATGCTACATTG 59.179 38.462 0.00 0.00 0.00 2.82
3426 3848 6.951971 AGAAGGAAAGTCACTATGCTACATT 58.048 36.000 0.00 0.00 0.00 2.71
3427 3849 6.155221 TGAGAAGGAAAGTCACTATGCTACAT 59.845 38.462 0.00 0.00 0.00 2.29
3428 3850 5.480422 TGAGAAGGAAAGTCACTATGCTACA 59.520 40.000 0.00 0.00 0.00 2.74
3429 3851 5.967088 TGAGAAGGAAAGTCACTATGCTAC 58.033 41.667 0.00 0.00 0.00 3.58
3430 3852 6.605471 TTGAGAAGGAAAGTCACTATGCTA 57.395 37.500 0.00 0.00 0.00 3.49
3431 3853 5.489792 TTGAGAAGGAAAGTCACTATGCT 57.510 39.130 0.00 0.00 0.00 3.79
3432 3854 5.645497 ACATTGAGAAGGAAAGTCACTATGC 59.355 40.000 0.00 0.00 0.00 3.14
3433 3855 7.678947 AACATTGAGAAGGAAAGTCACTATG 57.321 36.000 0.00 0.00 0.00 2.23
3434 3856 8.816894 TCTAACATTGAGAAGGAAAGTCACTAT 58.183 33.333 0.00 0.00 0.00 2.12
3435 3857 8.190326 TCTAACATTGAGAAGGAAAGTCACTA 57.810 34.615 0.00 0.00 0.00 2.74
3436 3858 7.067496 TCTAACATTGAGAAGGAAAGTCACT 57.933 36.000 0.00 0.00 0.00 3.41
3437 3859 6.370166 CCTCTAACATTGAGAAGGAAAGTCAC 59.630 42.308 0.00 0.00 33.68 3.67
3438 3860 6.270000 TCCTCTAACATTGAGAAGGAAAGTCA 59.730 38.462 0.00 0.00 33.68 3.41
3439 3861 6.702329 TCCTCTAACATTGAGAAGGAAAGTC 58.298 40.000 0.00 0.00 33.68 3.01
3440 3862 6.688073 TCCTCTAACATTGAGAAGGAAAGT 57.312 37.500 0.00 0.00 33.68 2.66
3441 3863 6.765512 GGATCCTCTAACATTGAGAAGGAAAG 59.234 42.308 3.84 0.00 33.68 2.62
3442 3864 6.630413 CGGATCCTCTAACATTGAGAAGGAAA 60.630 42.308 10.75 0.00 33.68 3.13
3443 3865 5.163405 CGGATCCTCTAACATTGAGAAGGAA 60.163 44.000 10.75 0.00 33.68 3.36
3444 3866 4.342378 CGGATCCTCTAACATTGAGAAGGA 59.658 45.833 10.75 0.00 33.68 3.36
3445 3867 4.502259 CCGGATCCTCTAACATTGAGAAGG 60.502 50.000 10.75 0.00 33.68 3.46
3446 3868 4.100189 ACCGGATCCTCTAACATTGAGAAG 59.900 45.833 9.46 0.00 33.68 2.85
3447 3869 4.030913 ACCGGATCCTCTAACATTGAGAA 58.969 43.478 9.46 0.00 33.68 2.87
3448 3870 3.643237 ACCGGATCCTCTAACATTGAGA 58.357 45.455 9.46 0.00 33.68 3.27
3449 3871 4.372656 GAACCGGATCCTCTAACATTGAG 58.627 47.826 9.46 0.00 0.00 3.02
3450 3872 3.134081 GGAACCGGATCCTCTAACATTGA 59.866 47.826 22.87 0.00 36.50 2.57
3451 3873 3.467803 GGAACCGGATCCTCTAACATTG 58.532 50.000 22.87 0.00 36.50 2.82
3452 3874 2.102588 CGGAACCGGATCCTCTAACATT 59.897 50.000 26.42 0.00 37.34 2.71
3453 3875 1.687123 CGGAACCGGATCCTCTAACAT 59.313 52.381 26.42 0.00 37.34 2.71
3454 3876 1.108776 CGGAACCGGATCCTCTAACA 58.891 55.000 26.42 0.00 37.34 2.41
3455 3877 1.109609 ACGGAACCGGATCCTCTAAC 58.890 55.000 26.42 1.47 44.69 2.34
3456 3878 1.108776 CACGGAACCGGATCCTCTAA 58.891 55.000 26.42 0.00 44.69 2.10
3457 3879 0.033796 ACACGGAACCGGATCCTCTA 60.034 55.000 26.42 0.00 44.69 2.43
3458 3880 1.305046 ACACGGAACCGGATCCTCT 60.305 57.895 26.42 10.25 44.69 3.69
3459 3881 1.141234 GACACGGAACCGGATCCTC 59.859 63.158 26.42 14.82 44.69 3.71
3460 3882 2.356780 GGACACGGAACCGGATCCT 61.357 63.158 26.42 9.88 44.69 3.24
3461 3883 2.186125 GGACACGGAACCGGATCC 59.814 66.667 20.51 20.51 44.69 3.36
3462 3884 2.186125 GGGACACGGAACCGGATC 59.814 66.667 9.46 5.54 44.69 3.36
3463 3885 2.284405 AGGGACACGGAACCGGAT 60.284 61.111 9.46 0.00 44.69 4.18
3464 3886 3.307906 CAGGGACACGGAACCGGA 61.308 66.667 9.46 0.00 44.69 5.14
3465 3887 2.656069 ATCAGGGACACGGAACCGG 61.656 63.158 17.44 0.00 44.69 5.28
3466 3888 1.447838 CATCAGGGACACGGAACCG 60.448 63.158 11.83 11.83 46.03 4.44
3467 3889 0.391263 GTCATCAGGGACACGGAACC 60.391 60.000 0.00 0.00 37.73 3.62
3468 3890 0.736325 CGTCATCAGGGACACGGAAC 60.736 60.000 0.00 0.00 37.66 3.62
3469 3891 1.589630 CGTCATCAGGGACACGGAA 59.410 57.895 0.00 0.00 37.66 4.30
3470 3892 3.001902 GCGTCATCAGGGACACGGA 62.002 63.158 0.00 0.00 37.66 4.69
3471 3893 2.509336 GCGTCATCAGGGACACGG 60.509 66.667 0.00 0.00 37.66 4.94
3472 3894 2.509336 GGCGTCATCAGGGACACG 60.509 66.667 0.00 0.00 37.66 4.49
3473 3895 2.509336 CGGCGTCATCAGGGACAC 60.509 66.667 0.00 0.00 37.66 3.67
3474 3896 2.678580 TCGGCGTCATCAGGGACA 60.679 61.111 6.85 0.00 37.66 4.02
3475 3897 2.105128 CTCGGCGTCATCAGGGAC 59.895 66.667 6.85 0.00 34.42 4.46
3476 3898 3.838271 GCTCGGCGTCATCAGGGA 61.838 66.667 6.85 0.00 0.00 4.20
3477 3899 4.899239 GGCTCGGCGTCATCAGGG 62.899 72.222 6.85 0.00 0.00 4.45
3478 3900 4.147449 TGGCTCGGCGTCATCAGG 62.147 66.667 6.85 0.00 0.00 3.86
3479 3901 2.584418 CTGGCTCGGCGTCATCAG 60.584 66.667 6.85 7.30 0.00 2.90
3480 3902 4.147449 CCTGGCTCGGCGTCATCA 62.147 66.667 6.85 0.82 0.00 3.07
3481 3903 3.781770 CTCCTGGCTCGGCGTCATC 62.782 68.421 6.85 0.00 0.00 2.92
3482 3904 3.842923 CTCCTGGCTCGGCGTCAT 61.843 66.667 6.85 0.00 0.00 3.06
3484 3906 2.707849 TAACTCCTGGCTCGGCGTC 61.708 63.158 6.85 0.00 0.00 5.19
3485 3907 2.678934 TAACTCCTGGCTCGGCGT 60.679 61.111 6.85 0.00 0.00 5.68
3486 3908 2.202756 GTAACTCCTGGCTCGGCG 60.203 66.667 0.00 0.00 0.00 6.46
3487 3909 2.187163 GGTAACTCCTGGCTCGGC 59.813 66.667 0.00 0.00 0.00 5.54
3506 3928 3.432588 CACGCCGACCTCGACTCT 61.433 66.667 0.00 0.00 43.02 3.24
3541 3963 2.039137 AACCTCGGACTCCCCTCC 59.961 66.667 0.00 0.00 0.00 4.30
3571 3993 3.775654 CAGCTCCGGTGAGTCCCC 61.776 72.222 7.92 0.00 40.95 4.81
3599 4021 1.230212 CAGCCATCCCCTTAACCCC 59.770 63.158 0.00 0.00 0.00 4.95
3600 4022 0.183731 CTCAGCCATCCCCTTAACCC 59.816 60.000 0.00 0.00 0.00 4.11
3601 4023 0.183731 CCTCAGCCATCCCCTTAACC 59.816 60.000 0.00 0.00 0.00 2.85
3602 4024 0.183731 CCCTCAGCCATCCCCTTAAC 59.816 60.000 0.00 0.00 0.00 2.01
3603 4025 1.645402 GCCCTCAGCCATCCCCTTAA 61.645 60.000 0.00 0.00 34.35 1.85
3604 4026 2.078665 GCCCTCAGCCATCCCCTTA 61.079 63.158 0.00 0.00 34.35 2.69
3605 4027 3.424105 GCCCTCAGCCATCCCCTT 61.424 66.667 0.00 0.00 34.35 3.95
3616 4038 1.613317 ATGATGAACGGTCGCCCTCA 61.613 55.000 0.00 0.00 0.00 3.86
3626 4048 1.560923 GTCACCTCCGATGATGAACG 58.439 55.000 0.00 0.00 0.00 3.95
3634 4056 0.460311 CTTAAGCCGTCACCTCCGAT 59.540 55.000 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.