Multiple sequence alignment - TraesCS4B01G308100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4B01G308100 | chr4B | 100.000 | 3670 | 0 | 0 | 1 | 3670 | 598460204 | 598456535 | 0.000000e+00 | 6778.0 |
1 | TraesCS4B01G308100 | chr4B | 100.000 | 1865 | 0 | 0 | 3961 | 5825 | 598456244 | 598454380 | 0.000000e+00 | 3445.0 |
2 | TraesCS4B01G308100 | chr4B | 85.932 | 789 | 80 | 16 | 1339 | 2114 | 598913592 | 598912822 | 0.000000e+00 | 813.0 |
3 | TraesCS4B01G308100 | chr4B | 85.533 | 788 | 82 | 12 | 1339 | 2114 | 599170184 | 599169417 | 0.000000e+00 | 795.0 |
4 | TraesCS4B01G308100 | chr4B | 91.500 | 400 | 29 | 4 | 948 | 1345 | 599170607 | 599170211 | 3.970000e-151 | 545.0 |
5 | TraesCS4B01G308100 | chr4B | 90.704 | 398 | 33 | 3 | 948 | 1345 | 598914012 | 598913619 | 1.440000e-145 | 527.0 |
6 | TraesCS4B01G308100 | chr4B | 92.308 | 299 | 23 | 0 | 1047 | 1345 | 598603090 | 598602792 | 5.400000e-115 | 425.0 |
7 | TraesCS4B01G308100 | chr4B | 93.562 | 233 | 15 | 0 | 1882 | 2114 | 598602353 | 598602121 | 1.200000e-91 | 348.0 |
8 | TraesCS4B01G308100 | chr4B | 74.860 | 895 | 126 | 53 | 4504 | 5323 | 598911540 | 598910670 | 1.220000e-81 | 315.0 |
9 | TraesCS4B01G308100 | chr4B | 88.618 | 123 | 8 | 6 | 604 | 725 | 598603570 | 598603453 | 1.690000e-30 | 145.0 |
10 | TraesCS4B01G308100 | chr4B | 88.618 | 123 | 8 | 6 | 604 | 725 | 598914228 | 598914111 | 1.690000e-30 | 145.0 |
11 | TraesCS4B01G308100 | chr4B | 88.618 | 123 | 8 | 6 | 604 | 725 | 599170865 | 599170748 | 1.690000e-30 | 145.0 |
12 | TraesCS4B01G308100 | chr4B | 84.459 | 148 | 17 | 5 | 1423 | 1564 | 14653486 | 14653339 | 2.190000e-29 | 141.0 |
13 | TraesCS4B01G308100 | chr4B | 95.652 | 69 | 3 | 0 | 3174 | 3242 | 598456996 | 598456928 | 1.720000e-20 | 111.0 |
14 | TraesCS4B01G308100 | chr4B | 95.652 | 69 | 3 | 0 | 3209 | 3277 | 598457031 | 598456963 | 1.720000e-20 | 111.0 |
15 | TraesCS4B01G308100 | chr4B | 84.545 | 110 | 13 | 3 | 948 | 1057 | 598603341 | 598603236 | 7.980000e-19 | 106.0 |
16 | TraesCS4B01G308100 | chr4B | 80.392 | 102 | 17 | 3 | 3 | 102 | 598915164 | 598915064 | 2.250000e-09 | 75.0 |
17 | TraesCS4B01G308100 | chr4A | 94.619 | 1338 | 51 | 12 | 3961 | 5291 | 681610126 | 681611449 | 0.000000e+00 | 2052.0 |
18 | TraesCS4B01G308100 | chr4A | 86.910 | 1864 | 128 | 40 | 4035 | 5824 | 681658030 | 681659851 | 0.000000e+00 | 1984.0 |
19 | TraesCS4B01G308100 | chr4A | 94.274 | 1013 | 49 | 6 | 2406 | 3415 | 681608365 | 681609371 | 0.000000e+00 | 1541.0 |
20 | TraesCS4B01G308100 | chr4A | 91.862 | 983 | 52 | 10 | 1339 | 2306 | 681653538 | 681654507 | 0.000000e+00 | 1347.0 |
21 | TraesCS4B01G308100 | chr4A | 89.422 | 1021 | 74 | 10 | 1339 | 2341 | 681593406 | 681594410 | 0.000000e+00 | 1256.0 |
22 | TraesCS4B01G308100 | chr4A | 94.071 | 506 | 27 | 2 | 5315 | 5819 | 681611445 | 681611948 | 0.000000e+00 | 765.0 |
23 | TraesCS4B01G308100 | chr4A | 89.152 | 507 | 29 | 8 | 2527 | 3024 | 681654668 | 681655157 | 4.990000e-170 | 608.0 |
24 | TraesCS4B01G308100 | chr4A | 94.819 | 386 | 20 | 0 | 948 | 1333 | 681592976 | 681593361 | 2.320000e-168 | 603.0 |
25 | TraesCS4B01G308100 | chr4A | 90.843 | 415 | 32 | 4 | 931 | 1345 | 681653103 | 681653511 | 8.530000e-153 | 551.0 |
26 | TraesCS4B01G308100 | chr4A | 96.183 | 262 | 9 | 1 | 3408 | 3668 | 681609789 | 681610050 | 1.500000e-115 | 427.0 |
27 | TraesCS4B01G308100 | chr4A | 87.209 | 344 | 23 | 9 | 3332 | 3670 | 681656231 | 681656558 | 7.130000e-99 | 372.0 |
28 | TraesCS4B01G308100 | chr4A | 95.135 | 185 | 7 | 2 | 2325 | 2508 | 681654496 | 681654679 | 2.050000e-74 | 291.0 |
29 | TraesCS4B01G308100 | chr4A | 83.333 | 222 | 19 | 9 | 3024 | 3228 | 681656009 | 681656229 | 7.710000e-44 | 189.0 |
30 | TraesCS4B01G308100 | chr4A | 92.857 | 70 | 5 | 0 | 2340 | 2409 | 681608017 | 681608086 | 1.030000e-17 | 102.0 |
31 | TraesCS4B01G308100 | chr4A | 94.030 | 67 | 4 | 0 | 3176 | 3242 | 681609167 | 681609233 | 1.030000e-17 | 102.0 |
32 | TraesCS4B01G308100 | chr4A | 87.838 | 74 | 7 | 1 | 601 | 674 | 681652883 | 681652954 | 1.040000e-12 | 86.1 |
33 | TraesCS4B01G308100 | chr4D | 87.616 | 1728 | 114 | 33 | 4014 | 5668 | 474599922 | 474598222 | 0.000000e+00 | 1914.0 |
34 | TraesCS4B01G308100 | chr4D | 93.095 | 840 | 28 | 8 | 765 | 1580 | 474603398 | 474602565 | 0.000000e+00 | 1203.0 |
35 | TraesCS4B01G308100 | chr4D | 93.848 | 699 | 27 | 7 | 1621 | 2306 | 474602562 | 474601867 | 0.000000e+00 | 1038.0 |
36 | TraesCS4B01G308100 | chr4D | 96.870 | 575 | 17 | 1 | 1 | 575 | 474604078 | 474603505 | 0.000000e+00 | 961.0 |
37 | TraesCS4B01G308100 | chr4D | 85.714 | 791 | 77 | 16 | 1339 | 2114 | 474700958 | 474700189 | 0.000000e+00 | 802.0 |
38 | TraesCS4B01G308100 | chr4D | 92.994 | 471 | 24 | 5 | 2645 | 3107 | 474601368 | 474600899 | 0.000000e+00 | 678.0 |
39 | TraesCS4B01G308100 | chr4D | 92.677 | 396 | 24 | 4 | 951 | 1345 | 474701376 | 474700985 | 3.050000e-157 | 566.0 |
40 | TraesCS4B01G308100 | chr4D | 91.282 | 390 | 25 | 5 | 3288 | 3670 | 474600802 | 474600415 | 1.860000e-144 | 523.0 |
41 | TraesCS4B01G308100 | chr4D | 75.556 | 990 | 144 | 46 | 4404 | 5323 | 474699044 | 474698083 | 1.180000e-106 | 398.0 |
42 | TraesCS4B01G308100 | chr4D | 94.022 | 184 | 9 | 2 | 2325 | 2508 | 474601878 | 474601697 | 1.600000e-70 | 278.0 |
43 | TraesCS4B01G308100 | chr4D | 89.080 | 174 | 16 | 2 | 5654 | 5825 | 474592790 | 474592618 | 4.570000e-51 | 213.0 |
44 | TraesCS4B01G308100 | chr4D | 96.800 | 125 | 4 | 0 | 601 | 725 | 474603520 | 474603396 | 5.910000e-50 | 209.0 |
45 | TraesCS4B01G308100 | chr4D | 87.805 | 123 | 9 | 6 | 604 | 725 | 474701641 | 474701524 | 7.870000e-29 | 139.0 |
46 | TraesCS4B01G308100 | chr4D | 98.361 | 61 | 1 | 0 | 3217 | 3277 | 474600805 | 474600865 | 2.220000e-19 | 108.0 |
47 | TraesCS4B01G308100 | chr3A | 75.723 | 622 | 83 | 41 | 983 | 1569 | 11677531 | 11676943 | 3.490000e-62 | 250.0 |
48 | TraesCS4B01G308100 | chr3A | 75.402 | 622 | 85 | 41 | 983 | 1569 | 11704977 | 11704389 | 7.540000e-59 | 239.0 |
49 | TraesCS4B01G308100 | chr3A | 81.765 | 170 | 26 | 2 | 1630 | 1794 | 11676860 | 11676691 | 2.830000e-28 | 137.0 |
50 | TraesCS4B01G308100 | chr3A | 81.765 | 170 | 26 | 2 | 1630 | 1794 | 11704307 | 11704138 | 2.830000e-28 | 137.0 |
51 | TraesCS4B01G308100 | chr5D | 90.769 | 65 | 3 | 2 | 5755 | 5819 | 542633371 | 542633310 | 3.740000e-12 | 84.2 |
52 | TraesCS4B01G308100 | chr5D | 90.566 | 53 | 2 | 2 | 3165 | 3217 | 495311484 | 495311533 | 3.770000e-07 | 67.6 |
53 | TraesCS4B01G308100 | chr7D | 88.889 | 63 | 5 | 2 | 3244 | 3306 | 428723336 | 428723276 | 6.260000e-10 | 76.8 |
54 | TraesCS4B01G308100 | chr7D | 95.652 | 46 | 2 | 0 | 3162 | 3207 | 195654119 | 195654074 | 2.250000e-09 | 75.0 |
55 | TraesCS4B01G308100 | chr7A | 90.741 | 54 | 4 | 1 | 3166 | 3218 | 55160742 | 55160689 | 2.910000e-08 | 71.3 |
56 | TraesCS4B01G308100 | chr7A | 88.333 | 60 | 5 | 2 | 3163 | 3220 | 680540609 | 680540668 | 2.910000e-08 | 71.3 |
57 | TraesCS4B01G308100 | chr7A | 87.500 | 48 | 5 | 1 | 3209 | 3255 | 680540621 | 680540668 | 3.000000e-03 | 54.7 |
58 | TraesCS4B01G308100 | chr5B | 88.525 | 61 | 4 | 3 | 5749 | 5808 | 588581087 | 588581145 | 2.910000e-08 | 71.3 |
59 | TraesCS4B01G308100 | chr1D | 79.646 | 113 | 11 | 6 | 3165 | 3275 | 63636317 | 63636215 | 2.910000e-08 | 71.3 |
60 | TraesCS4B01G308100 | chr5A | 87.500 | 64 | 3 | 4 | 3239 | 3301 | 219252576 | 219252517 | 1.050000e-07 | 69.4 |
61 | TraesCS4B01G308100 | chr7B | 87.931 | 58 | 5 | 2 | 3244 | 3301 | 446152440 | 446152385 | 3.770000e-07 | 67.6 |
62 | TraesCS4B01G308100 | chr6D | 86.885 | 61 | 5 | 2 | 3244 | 3301 | 9669760 | 9669820 | 1.350000e-06 | 65.8 |
63 | TraesCS4B01G308100 | chr6D | 86.885 | 61 | 5 | 2 | 3244 | 3301 | 298384576 | 298384636 | 1.350000e-06 | 65.8 |
64 | TraesCS4B01G308100 | chr2A | 100.000 | 35 | 0 | 0 | 3209 | 3243 | 723569495 | 723569461 | 1.350000e-06 | 65.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4B01G308100 | chr4B | 598454380 | 598460204 | 5824 | True | 2611.2500 | 6778 | 97.826000 | 1 | 5825 | 4 | chr4B.!!$R2 | 5824 |
1 | TraesCS4B01G308100 | chr4B | 599169417 | 599170865 | 1448 | True | 495.0000 | 795 | 88.550333 | 604 | 2114 | 3 | chr4B.!!$R5 | 1510 |
2 | TraesCS4B01G308100 | chr4B | 598910670 | 598915164 | 4494 | True | 375.0000 | 813 | 84.101200 | 3 | 5323 | 5 | chr4B.!!$R4 | 5320 |
3 | TraesCS4B01G308100 | chr4B | 598602121 | 598603570 | 1449 | True | 256.0000 | 425 | 89.758250 | 604 | 2114 | 4 | chr4B.!!$R3 | 1510 |
4 | TraesCS4B01G308100 | chr4A | 681592976 | 681594410 | 1434 | False | 929.5000 | 1256 | 92.120500 | 948 | 2341 | 2 | chr4A.!!$F1 | 1393 |
5 | TraesCS4B01G308100 | chr4A | 681608017 | 681611948 | 3931 | False | 831.5000 | 2052 | 94.339000 | 2340 | 5819 | 6 | chr4A.!!$F2 | 3479 |
6 | TraesCS4B01G308100 | chr4A | 681652883 | 681659851 | 6968 | False | 678.5125 | 1984 | 89.035250 | 601 | 5824 | 8 | chr4A.!!$F3 | 5223 |
7 | TraesCS4B01G308100 | chr4D | 474598222 | 474604078 | 5856 | True | 850.5000 | 1914 | 93.315875 | 1 | 5668 | 8 | chr4D.!!$R2 | 5667 |
8 | TraesCS4B01G308100 | chr4D | 474698083 | 474701641 | 3558 | True | 476.2500 | 802 | 85.438000 | 604 | 5323 | 4 | chr4D.!!$R3 | 4719 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
498 | 1081 | 0.034186 | CCAGCTGACATGGCCCTAAA | 60.034 | 55.000 | 17.39 | 0.0 | 0.00 | 1.85 | F |
573 | 1156 | 0.037975 | CCACCTGCATGCACCTTTTC | 60.038 | 55.000 | 18.46 | 0.0 | 0.00 | 2.29 | F |
574 | 1157 | 0.037975 | CACCTGCATGCACCTTTTCC | 60.038 | 55.000 | 18.46 | 0.0 | 0.00 | 3.13 | F |
578 | 1161 | 0.112995 | TGCATGCACCTTTTCCCTCT | 59.887 | 50.000 | 18.46 | 0.0 | 0.00 | 3.69 | F |
2276 | 3196 | 0.530744 | GTGGACGTATGCCTCTCACA | 59.469 | 55.000 | 0.00 | 0.0 | 0.00 | 3.58 | F |
2371 | 3292 | 0.901114 | TGCGCTAGGTAAGGGTGTCA | 60.901 | 55.000 | 9.73 | 0.0 | 40.25 | 3.58 | F |
2395 | 3316 | 1.067283 | ACAATGGCTGACTCAGTCTCG | 60.067 | 52.381 | 11.90 | 0.0 | 36.97 | 4.04 | F |
4009 | 6920 | 0.106419 | TTGCCGGAGTTTCTTTGGGT | 60.106 | 50.000 | 5.05 | 0.0 | 0.00 | 4.51 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1870 | 2761 | 0.605319 | CCGGCAGCTTGTTTCCAGTA | 60.605 | 55.000 | 0.00 | 0.0 | 0.00 | 2.74 | R |
2114 | 3018 | 2.159338 | ACGATTCCAATTGAGCATGTGC | 60.159 | 45.455 | 7.12 | 0.0 | 42.49 | 4.57 | R |
2371 | 3292 | 2.234908 | GACTGAGTCAGCCATTGTAGGT | 59.765 | 50.000 | 20.31 | 0.0 | 34.37 | 3.08 | R |
2395 | 3316 | 2.968675 | ACAACAACTATCCTACGTGGC | 58.031 | 47.619 | 0.00 | 0.0 | 35.26 | 5.01 | R |
3994 | 6902 | 0.179001 | ACCCACCCAAAGAAACTCCG | 60.179 | 55.000 | 0.00 | 0.0 | 0.00 | 4.63 | R |
4009 | 6920 | 2.265367 | TGCTAAGAACCATCTGACCCA | 58.735 | 47.619 | 0.00 | 0.0 | 35.59 | 4.51 | R |
4346 | 8259 | 5.125900 | TGAAGAATGTGCCATGTCCTAATTG | 59.874 | 40.000 | 0.00 | 0.0 | 0.00 | 2.32 | R |
5768 | 10703 | 0.179142 | GGGTTTCTAGTCGCTCGTCC | 60.179 | 60.000 | 0.00 | 0.0 | 0.00 | 4.79 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
36 | 37 | 5.014123 | AGACTGGAATTAATCAAGGTCACCA | 59.986 | 40.000 | 0.00 | 0.00 | 32.84 | 4.17 |
71 | 72 | 4.886579 | ACAAGATGTTTCCTTTCCAATGC | 58.113 | 39.130 | 0.00 | 0.00 | 0.00 | 3.56 |
200 | 201 | 9.507329 | ACAGAGTTTGTGTAAATCTCATTGTAT | 57.493 | 29.630 | 0.00 | 0.00 | 38.99 | 2.29 |
252 | 253 | 5.655488 | AGACAATAAATCTCACTCTCGTGG | 58.345 | 41.667 | 0.00 | 0.00 | 41.53 | 4.94 |
406 | 981 | 5.358725 | ACAACACTTATTTTGGAACGAAGGT | 59.641 | 36.000 | 0.00 | 0.00 | 0.00 | 3.50 |
467 | 1050 | 4.263462 | ACATTTTGAGACAGAGGGCATGTA | 60.263 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
498 | 1081 | 0.034186 | CCAGCTGACATGGCCCTAAA | 60.034 | 55.000 | 17.39 | 0.00 | 0.00 | 1.85 |
503 | 1086 | 2.738743 | CTGACATGGCCCTAAATTGGT | 58.261 | 47.619 | 0.00 | 0.00 | 0.00 | 3.67 |
509 | 1092 | 5.466819 | ACATGGCCCTAAATTGGTCAATAT | 58.533 | 37.500 | 0.00 | 0.00 | 41.63 | 1.28 |
558 | 1141 | 0.611200 | GGTATTTTTGCCCCACCACC | 59.389 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
559 | 1142 | 1.639722 | GTATTTTTGCCCCACCACCT | 58.360 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
560 | 1143 | 1.275010 | GTATTTTTGCCCCACCACCTG | 59.725 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
561 | 1144 | 1.767654 | ATTTTTGCCCCACCACCTGC | 61.768 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
562 | 1145 | 3.686098 | TTTTGCCCCACCACCTGCA | 62.686 | 57.895 | 0.00 | 0.00 | 0.00 | 4.41 |
563 | 1146 | 2.961559 | TTTTGCCCCACCACCTGCAT | 62.962 | 55.000 | 0.00 | 0.00 | 33.08 | 3.96 |
564 | 1147 | 4.682334 | TGCCCCACCACCTGCATG | 62.682 | 66.667 | 0.00 | 0.00 | 0.00 | 4.06 |
566 | 1149 | 4.682334 | CCCCACCACCTGCATGCA | 62.682 | 66.667 | 21.29 | 21.29 | 0.00 | 3.96 |
567 | 1150 | 3.376078 | CCCACCACCTGCATGCAC | 61.376 | 66.667 | 18.46 | 0.00 | 0.00 | 4.57 |
568 | 1151 | 3.376078 | CCACCACCTGCATGCACC | 61.376 | 66.667 | 18.46 | 0.00 | 0.00 | 5.01 |
569 | 1152 | 2.282674 | CACCACCTGCATGCACCT | 60.283 | 61.111 | 18.46 | 0.65 | 0.00 | 4.00 |
570 | 1153 | 1.904865 | CACCACCTGCATGCACCTT | 60.905 | 57.895 | 18.46 | 0.00 | 0.00 | 3.50 |
571 | 1154 | 1.152483 | ACCACCTGCATGCACCTTT | 60.152 | 52.632 | 18.46 | 0.00 | 0.00 | 3.11 |
572 | 1155 | 0.760189 | ACCACCTGCATGCACCTTTT | 60.760 | 50.000 | 18.46 | 0.00 | 0.00 | 2.27 |
573 | 1156 | 0.037975 | CCACCTGCATGCACCTTTTC | 60.038 | 55.000 | 18.46 | 0.00 | 0.00 | 2.29 |
574 | 1157 | 0.037975 | CACCTGCATGCACCTTTTCC | 60.038 | 55.000 | 18.46 | 0.00 | 0.00 | 3.13 |
575 | 1158 | 1.187567 | ACCTGCATGCACCTTTTCCC | 61.188 | 55.000 | 18.46 | 0.00 | 0.00 | 3.97 |
576 | 1159 | 0.901580 | CCTGCATGCACCTTTTCCCT | 60.902 | 55.000 | 18.46 | 0.00 | 0.00 | 4.20 |
577 | 1160 | 0.529378 | CTGCATGCACCTTTTCCCTC | 59.471 | 55.000 | 18.46 | 0.00 | 0.00 | 4.30 |
578 | 1161 | 0.112995 | TGCATGCACCTTTTCCCTCT | 59.887 | 50.000 | 18.46 | 0.00 | 0.00 | 3.69 |
579 | 1162 | 1.260544 | GCATGCACCTTTTCCCTCTT | 58.739 | 50.000 | 14.21 | 0.00 | 0.00 | 2.85 |
580 | 1163 | 1.620323 | GCATGCACCTTTTCCCTCTTT | 59.380 | 47.619 | 14.21 | 0.00 | 0.00 | 2.52 |
581 | 1164 | 2.037641 | GCATGCACCTTTTCCCTCTTTT | 59.962 | 45.455 | 14.21 | 0.00 | 0.00 | 2.27 |
582 | 1165 | 3.494924 | GCATGCACCTTTTCCCTCTTTTT | 60.495 | 43.478 | 14.21 | 0.00 | 0.00 | 1.94 |
722 | 1306 | 4.336713 | GCCCATTTGTTTTAGGCTAGAGAG | 59.663 | 45.833 | 0.00 | 0.00 | 40.57 | 3.20 |
723 | 1307 | 4.884164 | CCCATTTGTTTTAGGCTAGAGAGG | 59.116 | 45.833 | 0.00 | 0.00 | 0.00 | 3.69 |
724 | 1308 | 4.884164 | CCATTTGTTTTAGGCTAGAGAGGG | 59.116 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
725 | 1309 | 4.569719 | TTTGTTTTAGGCTAGAGAGGGG | 57.430 | 45.455 | 0.00 | 0.00 | 0.00 | 4.79 |
726 | 1310 | 1.838077 | TGTTTTAGGCTAGAGAGGGGC | 59.162 | 52.381 | 0.00 | 0.00 | 0.00 | 5.80 |
727 | 1311 | 1.141254 | GTTTTAGGCTAGAGAGGGGCC | 59.859 | 57.143 | 0.00 | 0.00 | 45.57 | 5.80 |
730 | 1314 | 3.994000 | GGCTAGAGAGGGGCCATT | 58.006 | 61.111 | 4.39 | 0.00 | 44.69 | 3.16 |
734 | 1318 | 2.036929 | GCTAGAGAGGGGCCATTGAGA | 61.037 | 57.143 | 4.39 | 0.00 | 0.00 | 3.27 |
752 | 1336 | 1.912043 | AGAGGCCTAGTGTGAGCAAAT | 59.088 | 47.619 | 4.42 | 0.00 | 0.00 | 2.32 |
787 | 1371 | 4.501571 | GGGAGCTTTTTCTTTTGGAGGAAC | 60.502 | 45.833 | 0.00 | 0.00 | 0.00 | 3.62 |
985 | 1574 | 3.669122 | GTCACGTGTGCTTAACTACTCTG | 59.331 | 47.826 | 16.51 | 0.00 | 0.00 | 3.35 |
1049 | 1797 | 1.371389 | GTACGGATCGGTCGATGCC | 60.371 | 63.158 | 16.79 | 12.99 | 39.36 | 4.40 |
1172 | 1920 | 1.251527 | GGCTTCTCGTGTCTCCAGGA | 61.252 | 60.000 | 0.00 | 0.00 | 34.51 | 3.86 |
1197 | 1945 | 1.809869 | CGATTCCTCGGAGCTGACA | 59.190 | 57.895 | 0.00 | 0.00 | 41.27 | 3.58 |
1290 | 2038 | 4.395583 | GCTGTGCACGAAGGCAGC | 62.396 | 66.667 | 13.13 | 10.67 | 45.96 | 5.25 |
1300 | 2048 | 4.335647 | AAGGCAGCTGGTCCACGG | 62.336 | 66.667 | 17.12 | 0.00 | 0.00 | 4.94 |
1599 | 2485 | 2.472695 | TGACTCAAATCTCCCAACCG | 57.527 | 50.000 | 0.00 | 0.00 | 0.00 | 4.44 |
1602 | 2488 | 2.742589 | GACTCAAATCTCCCAACCGTTC | 59.257 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
1609 | 2495 | 1.829222 | TCTCCCAACCGTTCCTACATC | 59.171 | 52.381 | 0.00 | 0.00 | 0.00 | 3.06 |
1696 | 2587 | 2.537401 | GACAAGGGGACGATTCTTACG | 58.463 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
1699 | 2590 | 1.400737 | AGGGGACGATTCTTACGGAG | 58.599 | 55.000 | 0.00 | 0.00 | 34.93 | 4.63 |
1744 | 2635 | 2.557676 | CCAAGAGAGGGTGAGGTCACTA | 60.558 | 54.545 | 9.90 | 0.00 | 45.73 | 2.74 |
2231 | 3145 | 6.094048 | GTGTGCCATTGTTAGAACATGTCTAT | 59.906 | 38.462 | 0.00 | 0.00 | 38.67 | 1.98 |
2269 | 3189 | 3.569250 | AAAATGTTGTGGACGTATGCC | 57.431 | 42.857 | 0.00 | 0.00 | 0.00 | 4.40 |
2276 | 3196 | 0.530744 | GTGGACGTATGCCTCTCACA | 59.469 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
2277 | 3197 | 1.067142 | GTGGACGTATGCCTCTCACAA | 60.067 | 52.381 | 0.00 | 0.00 | 0.00 | 3.33 |
2371 | 3292 | 0.901114 | TGCGCTAGGTAAGGGTGTCA | 60.901 | 55.000 | 9.73 | 0.00 | 40.25 | 3.58 |
2395 | 3316 | 1.067283 | ACAATGGCTGACTCAGTCTCG | 60.067 | 52.381 | 11.90 | 0.00 | 36.97 | 4.04 |
2453 | 3656 | 2.204151 | CTTGAGGGGAGTGGGGGT | 60.204 | 66.667 | 0.00 | 0.00 | 0.00 | 4.95 |
2499 | 3703 | 9.436957 | TGAGATTCCACTAAAATTTCTCTGTAC | 57.563 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
2500 | 3704 | 9.660180 | GAGATTCCACTAAAATTTCTCTGTACT | 57.340 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
2521 | 3725 | 9.445786 | TGTACTTTTAGAAGAAGAAAAATTGCG | 57.554 | 29.630 | 0.00 | 0.00 | 36.69 | 4.85 |
2522 | 3726 | 7.930513 | ACTTTTAGAAGAAGAAAAATTGCGG | 57.069 | 32.000 | 0.00 | 0.00 | 36.69 | 5.69 |
2523 | 3727 | 7.712797 | ACTTTTAGAAGAAGAAAAATTGCGGA | 58.287 | 30.769 | 0.00 | 0.00 | 36.69 | 5.54 |
2524 | 3728 | 8.360390 | ACTTTTAGAAGAAGAAAAATTGCGGAT | 58.640 | 29.630 | 0.00 | 0.00 | 36.69 | 4.18 |
2525 | 3729 | 8.519492 | TTTTAGAAGAAGAAAAATTGCGGATG | 57.481 | 30.769 | 0.00 | 0.00 | 0.00 | 3.51 |
2821 | 4300 | 5.128499 | TGCCAAATTCGTATGGAATCCATTT | 59.872 | 36.000 | 21.06 | 5.18 | 42.23 | 2.32 |
2832 | 4311 | 8.786898 | CGTATGGAATCCATTTCTATGTCATTT | 58.213 | 33.333 | 21.06 | 0.00 | 42.23 | 2.32 |
2918 | 4397 | 3.305629 | GCACTTGCACTCTTTCTCTATCG | 59.694 | 47.826 | 0.00 | 0.00 | 41.59 | 2.92 |
2935 | 4418 | 1.669604 | TCGACCCTCTCTCTCAATCG | 58.330 | 55.000 | 0.00 | 0.00 | 0.00 | 3.34 |
2953 | 4436 | 6.607689 | TCAATCGTCCAAAATACATGTGTTC | 58.392 | 36.000 | 9.11 | 0.00 | 0.00 | 3.18 |
2980 | 4464 | 1.179152 | TGCACCATCAAAGGCATCTG | 58.821 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2999 | 4483 | 7.221452 | GGCATCTGTAATGAAATTCATGTGTTC | 59.779 | 37.037 | 9.47 | 0.31 | 37.15 | 3.18 |
3294 | 5653 | 5.955488 | TCACTAGTGATCAGTTTACAGAGC | 58.045 | 41.667 | 21.74 | 0.00 | 34.14 | 4.09 |
3296 | 5655 | 3.238108 | AGTGATCAGTTTACAGAGCGG | 57.762 | 47.619 | 0.00 | 0.00 | 0.00 | 5.52 |
3301 | 5660 | 2.522185 | TCAGTTTACAGAGCGGGTACT | 58.478 | 47.619 | 0.00 | 0.00 | 0.00 | 2.73 |
3432 | 6217 | 4.729227 | AAACTAGTTTTTGTGTGTGGGG | 57.271 | 40.909 | 15.22 | 0.00 | 0.00 | 4.96 |
3554 | 6341 | 3.904339 | AGTTGTGTCCAGTGTCTAGGAAT | 59.096 | 43.478 | 0.00 | 0.00 | 35.29 | 3.01 |
3994 | 6902 | 3.118261 | TCTCTCTCTCTCTCTCTCTTGCC | 60.118 | 52.174 | 0.00 | 0.00 | 0.00 | 4.52 |
4009 | 6920 | 0.106419 | TTGCCGGAGTTTCTTTGGGT | 60.106 | 50.000 | 5.05 | 0.00 | 0.00 | 4.51 |
4012 | 7012 | 0.893727 | CCGGAGTTTCTTTGGGTGGG | 60.894 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
4139 | 8043 | 2.820178 | TGCTCCATGACCACTCTAGAA | 58.180 | 47.619 | 0.00 | 0.00 | 0.00 | 2.10 |
4256 | 8166 | 4.984785 | GCAACTCAAAATCTCCTTGAAACC | 59.015 | 41.667 | 0.00 | 0.00 | 32.57 | 3.27 |
4346 | 8259 | 5.429130 | AGTACTTTCTCCGATCCAAAATCC | 58.571 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
4577 | 9388 | 1.064240 | TCGGTCTAGAGGCATGTGGTA | 60.064 | 52.381 | 0.00 | 0.00 | 0.00 | 3.25 |
4578 | 9389 | 1.338337 | CGGTCTAGAGGCATGTGGTAG | 59.662 | 57.143 | 0.00 | 0.00 | 0.00 | 3.18 |
4579 | 9390 | 2.667470 | GGTCTAGAGGCATGTGGTAGA | 58.333 | 52.381 | 0.00 | 0.00 | 0.00 | 2.59 |
4580 | 9391 | 3.235200 | GGTCTAGAGGCATGTGGTAGAT | 58.765 | 50.000 | 0.00 | 0.00 | 0.00 | 1.98 |
4691 | 9517 | 5.648092 | GGAACTAAACATGACCAGCTACATT | 59.352 | 40.000 | 0.00 | 0.00 | 0.00 | 2.71 |
4701 | 9528 | 3.347216 | ACCAGCTACATTTGTTAGGCTG | 58.653 | 45.455 | 17.81 | 17.81 | 40.72 | 4.85 |
4771 | 9609 | 3.921021 | CGTCAACACAGAGGAGATTGTAC | 59.079 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
4931 | 9811 | 0.958876 | ATGCGGAGGTCGGGTTTTTC | 60.959 | 55.000 | 0.00 | 0.00 | 39.69 | 2.29 |
5144 | 10057 | 4.518249 | GTCCACTTGGCTAAGCTCTAATT | 58.482 | 43.478 | 10.10 | 0.00 | 37.43 | 1.40 |
5168 | 10085 | 0.257328 | TTGGATCATGGCGCCCTTAA | 59.743 | 50.000 | 26.77 | 4.98 | 0.00 | 1.85 |
5202 | 10119 | 8.062231 | CGATTACATACAAATCGTAAAGCTCT | 57.938 | 34.615 | 9.43 | 0.00 | 46.59 | 4.09 |
5262 | 10180 | 1.067060 | TCTCACGATAATGGGCGACAG | 59.933 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
5295 | 10213 | 2.417651 | CGAAGGGCATGGTAGTCGTTTA | 60.418 | 50.000 | 0.00 | 0.00 | 0.00 | 2.01 |
5300 | 10223 | 6.869206 | AGGGCATGGTAGTCGTTTATATAT | 57.131 | 37.500 | 0.00 | 0.00 | 0.00 | 0.86 |
5303 | 10226 | 7.069578 | AGGGCATGGTAGTCGTTTATATATAGG | 59.930 | 40.741 | 0.00 | 0.00 | 0.00 | 2.57 |
5305 | 10228 | 7.919621 | GGCATGGTAGTCGTTTATATATAGGTC | 59.080 | 40.741 | 0.00 | 0.00 | 0.00 | 3.85 |
5307 | 10230 | 8.886719 | CATGGTAGTCGTTTATATATAGGTCGA | 58.113 | 37.037 | 9.99 | 9.99 | 0.00 | 4.20 |
5328 | 10251 | 4.442403 | CGATGTCCATAGTCATCTGAAACG | 59.558 | 45.833 | 0.00 | 0.00 | 36.68 | 3.60 |
5355 | 10278 | 3.009143 | GTCACCCCAAATGTTAGGAGAGT | 59.991 | 47.826 | 0.00 | 0.00 | 0.00 | 3.24 |
5361 | 10284 | 5.414765 | CCCCAAATGTTAGGAGAGTAACAAC | 59.585 | 44.000 | 0.87 | 0.00 | 44.15 | 3.32 |
5393 | 10316 | 2.835764 | ACTTTGGATCAGGCAAATGCAT | 59.164 | 40.909 | 7.80 | 0.00 | 44.36 | 3.96 |
5618 | 10552 | 7.749666 | AGATCGGTACACTACCCTAAATACTA | 58.250 | 38.462 | 0.00 | 0.00 | 46.27 | 1.82 |
5668 | 10602 | 6.116806 | TGTTTGTTTGCGGGTATATATGACT | 58.883 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
5714 | 10649 | 5.598416 | ATCAACACACGATCCATTAGAGA | 57.402 | 39.130 | 0.00 | 0.00 | 0.00 | 3.10 |
5720 | 10655 | 3.191581 | ACACGATCCATTAGAGATAGCCG | 59.808 | 47.826 | 0.00 | 0.00 | 0.00 | 5.52 |
5766 | 10701 | 5.786311 | TCTTTCGAATCGTTTTTCCCTCTA | 58.214 | 37.500 | 1.52 | 0.00 | 0.00 | 2.43 |
5768 | 10703 | 4.119442 | TCGAATCGTTTTTCCCTCTAGG | 57.881 | 45.455 | 1.52 | 0.00 | 0.00 | 3.02 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
16 | 17 | 7.004086 | GGATATGGTGACCTTGATTAATTCCA | 58.996 | 38.462 | 2.11 | 0.00 | 0.00 | 3.53 |
28 | 29 | 3.910627 | GTCTATTGGGGATATGGTGACCT | 59.089 | 47.826 | 2.11 | 0.00 | 0.00 | 3.85 |
36 | 37 | 7.074237 | AGGAAACATCTTGTCTATTGGGGATAT | 59.926 | 37.037 | 0.00 | 0.00 | 0.00 | 1.63 |
71 | 72 | 8.925161 | AAGATAAGATTGAGAAGAAGAAGACG | 57.075 | 34.615 | 0.00 | 0.00 | 0.00 | 4.18 |
433 | 1008 | 9.092876 | CTCTGTCTCAAAATGTAAGTATCTTCC | 57.907 | 37.037 | 0.00 | 0.00 | 0.00 | 3.46 |
498 | 1081 | 9.113838 | GTATGTTTGACTCTCATATTGACCAAT | 57.886 | 33.333 | 0.64 | 0.64 | 34.93 | 3.16 |
503 | 1086 | 6.337356 | TGCGTATGTTTGACTCTCATATTGA | 58.663 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
509 | 1092 | 4.186856 | TGATGCGTATGTTTGACTCTCA | 57.813 | 40.909 | 0.00 | 0.00 | 0.00 | 3.27 |
558 | 1141 | 0.529378 | GAGGGAAAAGGTGCATGCAG | 59.471 | 55.000 | 23.41 | 0.00 | 0.00 | 4.41 |
559 | 1142 | 0.112995 | AGAGGGAAAAGGTGCATGCA | 59.887 | 50.000 | 18.46 | 18.46 | 0.00 | 3.96 |
560 | 1143 | 1.260544 | AAGAGGGAAAAGGTGCATGC | 58.739 | 50.000 | 11.82 | 11.82 | 0.00 | 4.06 |
561 | 1144 | 4.341366 | AAAAAGAGGGAAAAGGTGCATG | 57.659 | 40.909 | 0.00 | 0.00 | 0.00 | 4.06 |
599 | 1182 | 0.664166 | CACGGAAAAGGTGCATGCAC | 60.664 | 55.000 | 37.29 | 37.29 | 45.49 | 4.57 |
726 | 1310 | 1.833630 | TCACACTAGGCCTCTCAATGG | 59.166 | 52.381 | 9.68 | 0.00 | 0.00 | 3.16 |
727 | 1311 | 2.741228 | GCTCACACTAGGCCTCTCAATG | 60.741 | 54.545 | 9.68 | 4.13 | 0.00 | 2.82 |
728 | 1312 | 1.484240 | GCTCACACTAGGCCTCTCAAT | 59.516 | 52.381 | 9.68 | 0.00 | 0.00 | 2.57 |
729 | 1313 | 0.898320 | GCTCACACTAGGCCTCTCAA | 59.102 | 55.000 | 9.68 | 0.00 | 0.00 | 3.02 |
730 | 1314 | 0.251787 | TGCTCACACTAGGCCTCTCA | 60.252 | 55.000 | 9.68 | 0.00 | 0.00 | 3.27 |
734 | 1318 | 4.510167 | AATATTTGCTCACACTAGGCCT | 57.490 | 40.909 | 11.78 | 11.78 | 0.00 | 5.19 |
742 | 1326 | 4.629634 | CCGTCACTGTAATATTTGCTCACA | 59.370 | 41.667 | 0.00 | 0.00 | 0.00 | 3.58 |
752 | 1336 | 4.546829 | AAAAGCTCCCGTCACTGTAATA | 57.453 | 40.909 | 0.00 | 0.00 | 0.00 | 0.98 |
985 | 1574 | 3.433274 | TGCAACATCGAGACAGAAATGAC | 59.567 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
1159 | 1907 | 1.679305 | GGAGCTCCTGGAGACACGA | 60.679 | 63.158 | 27.53 | 0.00 | 35.60 | 4.35 |
1464 | 2260 | 4.884257 | ACGTGGTCTTGCGCGTGT | 62.884 | 61.111 | 8.43 | 0.00 | 36.16 | 4.49 |
1580 | 2466 | 1.697432 | ACGGTTGGGAGATTTGAGTCA | 59.303 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
1581 | 2467 | 2.474410 | ACGGTTGGGAGATTTGAGTC | 57.526 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1582 | 2468 | 2.552373 | GGAACGGTTGGGAGATTTGAGT | 60.552 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1583 | 2469 | 2.084546 | GGAACGGTTGGGAGATTTGAG | 58.915 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
1584 | 2470 | 1.702957 | AGGAACGGTTGGGAGATTTGA | 59.297 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
1585 | 2471 | 2.200373 | AGGAACGGTTGGGAGATTTG | 57.800 | 50.000 | 0.00 | 0.00 | 0.00 | 2.32 |
1586 | 2472 | 2.640826 | TGTAGGAACGGTTGGGAGATTT | 59.359 | 45.455 | 0.00 | 0.00 | 0.00 | 2.17 |
1587 | 2473 | 2.262637 | TGTAGGAACGGTTGGGAGATT | 58.737 | 47.619 | 0.00 | 0.00 | 0.00 | 2.40 |
1588 | 2474 | 1.946984 | TGTAGGAACGGTTGGGAGAT | 58.053 | 50.000 | 0.00 | 0.00 | 0.00 | 2.75 |
1589 | 2475 | 1.829222 | GATGTAGGAACGGTTGGGAGA | 59.171 | 52.381 | 0.00 | 0.00 | 0.00 | 3.71 |
1602 | 2488 | 9.040259 | TCCTGAAGGAATATTATGAGATGTAGG | 57.960 | 37.037 | 0.00 | 0.00 | 42.18 | 3.18 |
1653 | 2542 | 6.306837 | GTCCATCTGATCGATCGAAACTAATC | 59.693 | 42.308 | 23.50 | 14.21 | 0.00 | 1.75 |
1658 | 2547 | 3.706698 | TGTCCATCTGATCGATCGAAAC | 58.293 | 45.455 | 23.50 | 18.68 | 0.00 | 2.78 |
1870 | 2761 | 0.605319 | CCGGCAGCTTGTTTCCAGTA | 60.605 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
1880 | 2771 | 2.790791 | CCTCGATCTCCGGCAGCTT | 61.791 | 63.158 | 0.00 | 0.00 | 39.14 | 3.74 |
2114 | 3018 | 2.159338 | ACGATTCCAATTGAGCATGTGC | 60.159 | 45.455 | 7.12 | 0.00 | 42.49 | 4.57 |
2246 | 3166 | 4.854839 | GGCATACGTCCACAACATTTTTAC | 59.145 | 41.667 | 0.00 | 0.00 | 0.00 | 2.01 |
2247 | 3167 | 4.762765 | AGGCATACGTCCACAACATTTTTA | 59.237 | 37.500 | 0.00 | 0.00 | 0.00 | 1.52 |
2248 | 3168 | 3.572255 | AGGCATACGTCCACAACATTTTT | 59.428 | 39.130 | 0.00 | 0.00 | 0.00 | 1.94 |
2310 | 3230 | 6.006759 | AGAGAAGAAAATTCTCCGCAAAAG | 57.993 | 37.500 | 12.72 | 0.00 | 44.46 | 2.27 |
2316 | 3237 | 9.405587 | GTATATGAGAGAGAAGAAAATTCTCCG | 57.594 | 37.037 | 12.72 | 0.00 | 44.46 | 4.63 |
2371 | 3292 | 2.234908 | GACTGAGTCAGCCATTGTAGGT | 59.765 | 50.000 | 20.31 | 0.00 | 34.37 | 3.08 |
2395 | 3316 | 2.968675 | ACAACAACTATCCTACGTGGC | 58.031 | 47.619 | 0.00 | 0.00 | 35.26 | 5.01 |
2453 | 3656 | 6.001449 | CTCATATTTTGAGTGGGGTCCTAA | 57.999 | 41.667 | 0.00 | 0.00 | 45.79 | 2.69 |
2496 | 3700 | 8.902735 | CCGCAATTTTTCTTCTTCTAAAAGTAC | 58.097 | 33.333 | 0.00 | 0.00 | 33.95 | 2.73 |
2497 | 3701 | 8.842280 | TCCGCAATTTTTCTTCTTCTAAAAGTA | 58.158 | 29.630 | 0.00 | 0.00 | 33.95 | 2.24 |
2498 | 3702 | 7.712797 | TCCGCAATTTTTCTTCTTCTAAAAGT | 58.287 | 30.769 | 0.00 | 0.00 | 33.95 | 2.66 |
2499 | 3703 | 8.642020 | CATCCGCAATTTTTCTTCTTCTAAAAG | 58.358 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
2500 | 3704 | 7.598493 | CCATCCGCAATTTTTCTTCTTCTAAAA | 59.402 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
2501 | 3705 | 7.090173 | CCATCCGCAATTTTTCTTCTTCTAAA | 58.910 | 34.615 | 0.00 | 0.00 | 0.00 | 1.85 |
2502 | 3706 | 6.208599 | ACCATCCGCAATTTTTCTTCTTCTAA | 59.791 | 34.615 | 0.00 | 0.00 | 0.00 | 2.10 |
2503 | 3707 | 5.710099 | ACCATCCGCAATTTTTCTTCTTCTA | 59.290 | 36.000 | 0.00 | 0.00 | 0.00 | 2.10 |
2504 | 3708 | 4.524328 | ACCATCCGCAATTTTTCTTCTTCT | 59.476 | 37.500 | 0.00 | 0.00 | 0.00 | 2.85 |
2505 | 3709 | 4.809673 | ACCATCCGCAATTTTTCTTCTTC | 58.190 | 39.130 | 0.00 | 0.00 | 0.00 | 2.87 |
2506 | 3710 | 4.871933 | ACCATCCGCAATTTTTCTTCTT | 57.128 | 36.364 | 0.00 | 0.00 | 0.00 | 2.52 |
2507 | 3711 | 5.010282 | AGTACCATCCGCAATTTTTCTTCT | 58.990 | 37.500 | 0.00 | 0.00 | 0.00 | 2.85 |
2508 | 3712 | 5.310720 | AGTACCATCCGCAATTTTTCTTC | 57.689 | 39.130 | 0.00 | 0.00 | 0.00 | 2.87 |
2509 | 3713 | 5.722021 | AAGTACCATCCGCAATTTTTCTT | 57.278 | 34.783 | 0.00 | 0.00 | 0.00 | 2.52 |
2510 | 3714 | 5.722021 | AAAGTACCATCCGCAATTTTTCT | 57.278 | 34.783 | 0.00 | 0.00 | 0.00 | 2.52 |
2511 | 3715 | 7.309920 | TCTAAAAGTACCATCCGCAATTTTTC | 58.690 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
2512 | 3716 | 7.222000 | TCTAAAAGTACCATCCGCAATTTTT | 57.778 | 32.000 | 0.00 | 0.00 | 0.00 | 1.94 |
2513 | 3717 | 6.827586 | TCTAAAAGTACCATCCGCAATTTT | 57.172 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
2514 | 3718 | 6.827586 | TTCTAAAAGTACCATCCGCAATTT | 57.172 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
2515 | 3719 | 7.554835 | TGTATTCTAAAAGTACCATCCGCAATT | 59.445 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
2516 | 3720 | 7.051623 | TGTATTCTAAAAGTACCATCCGCAAT | 58.948 | 34.615 | 0.00 | 0.00 | 0.00 | 3.56 |
2517 | 3721 | 6.408035 | TGTATTCTAAAAGTACCATCCGCAA | 58.592 | 36.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2518 | 3722 | 5.979993 | TGTATTCTAAAAGTACCATCCGCA | 58.020 | 37.500 | 0.00 | 0.00 | 0.00 | 5.69 |
2519 | 3723 | 6.913873 | TTGTATTCTAAAAGTACCATCCGC | 57.086 | 37.500 | 0.00 | 0.00 | 0.00 | 5.54 |
2520 | 3724 | 7.855904 | GCATTTGTATTCTAAAAGTACCATCCG | 59.144 | 37.037 | 0.00 | 0.00 | 0.00 | 4.18 |
2521 | 3725 | 8.903820 | AGCATTTGTATTCTAAAAGTACCATCC | 58.096 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
2915 | 4394 | 2.226330 | CGATTGAGAGAGAGGGTCGAT | 58.774 | 52.381 | 0.00 | 0.00 | 0.00 | 3.59 |
2918 | 4397 | 1.679153 | GGACGATTGAGAGAGAGGGTC | 59.321 | 57.143 | 0.00 | 0.00 | 0.00 | 4.46 |
2935 | 4418 | 5.940470 | AGGAGAGAACACATGTATTTTGGAC | 59.060 | 40.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2953 | 4436 | 3.474600 | CCTTTGATGGTGCATAGGAGAG | 58.525 | 50.000 | 0.00 | 0.00 | 38.73 | 3.20 |
2999 | 4483 | 8.504815 | CATGCATTGAGAATTCCTACAGATTAG | 58.495 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
3001 | 4485 | 6.832384 | ACATGCATTGAGAATTCCTACAGATT | 59.168 | 34.615 | 0.00 | 0.00 | 0.00 | 2.40 |
3002 | 4486 | 6.363065 | ACATGCATTGAGAATTCCTACAGAT | 58.637 | 36.000 | 0.00 | 0.00 | 0.00 | 2.90 |
3003 | 4487 | 5.748402 | ACATGCATTGAGAATTCCTACAGA | 58.252 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
3279 | 5638 | 2.674796 | ACCCGCTCTGTAAACTGATC | 57.325 | 50.000 | 0.00 | 0.00 | 0.00 | 2.92 |
3554 | 6341 | 9.524106 | CAATCAACATAGTGTAATACTTCCGTA | 57.476 | 33.333 | 0.00 | 0.00 | 40.89 | 4.02 |
3627 | 6415 | 8.621532 | TGCACTCTACAAGAAACTATTTGATT | 57.378 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
3994 | 6902 | 0.179001 | ACCCACCCAAAGAAACTCCG | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
4009 | 6920 | 2.265367 | TGCTAAGAACCATCTGACCCA | 58.735 | 47.619 | 0.00 | 0.00 | 35.59 | 4.51 |
4012 | 7012 | 5.181748 | AGTCATTGCTAAGAACCATCTGAC | 58.818 | 41.667 | 0.00 | 0.00 | 35.59 | 3.51 |
4104 | 8007 | 7.067494 | GGTCATGGAGCATAGTGAAAATAAAGT | 59.933 | 37.037 | 0.00 | 0.00 | 0.00 | 2.66 |
4187 | 8092 | 9.884636 | TTACTATCTTATACTTTGCATGTGTGT | 57.115 | 29.630 | 0.00 | 0.00 | 0.00 | 3.72 |
4346 | 8259 | 5.125900 | TGAAGAATGTGCCATGTCCTAATTG | 59.874 | 40.000 | 0.00 | 0.00 | 0.00 | 2.32 |
4577 | 9388 | 8.476064 | TCTGAAGAGATTGATGCTTACTATCT | 57.524 | 34.615 | 0.00 | 0.00 | 33.97 | 1.98 |
4578 | 9389 | 7.329226 | GCTCTGAAGAGATTGATGCTTACTATC | 59.671 | 40.741 | 11.56 | 0.00 | 44.74 | 2.08 |
4579 | 9390 | 7.153985 | GCTCTGAAGAGATTGATGCTTACTAT | 58.846 | 38.462 | 11.56 | 0.00 | 44.74 | 2.12 |
4580 | 9391 | 6.097412 | TGCTCTGAAGAGATTGATGCTTACTA | 59.903 | 38.462 | 11.56 | 0.00 | 44.74 | 1.82 |
4691 | 9517 | 5.799827 | AATTTAAAGCCACAGCCTAACAA | 57.200 | 34.783 | 0.00 | 0.00 | 41.25 | 2.83 |
4701 | 9528 | 7.648908 | ACGGTAAAGTTGTAAATTTAAAGCCAC | 59.351 | 33.333 | 0.00 | 0.00 | 0.00 | 5.01 |
4771 | 9609 | 2.057316 | CAGTGCAGAGTTGAGTCTTCG | 58.943 | 52.381 | 0.00 | 0.00 | 0.00 | 3.79 |
4908 | 9787 | 2.511600 | CCCGACCTCCGCATCAAC | 60.512 | 66.667 | 0.00 | 0.00 | 36.84 | 3.18 |
5144 | 10057 | 2.308570 | AGGGCGCCATGATCCAATAATA | 59.691 | 45.455 | 30.85 | 0.00 | 0.00 | 0.98 |
5168 | 10085 | 6.690957 | CGATTTGTATGTAATCGCATGGTTTT | 59.309 | 34.615 | 5.23 | 0.00 | 45.10 | 2.43 |
5202 | 10119 | 4.423913 | AGAGATCTTCTATGCATGGGCTA | 58.576 | 43.478 | 10.16 | 0.00 | 36.05 | 3.93 |
5273 | 10191 | 1.883084 | CGACTACCATGCCCTTCGC | 60.883 | 63.158 | 0.00 | 0.00 | 38.31 | 4.70 |
5295 | 10213 | 9.290988 | GATGACTATGGACATCGACCTATATAT | 57.709 | 37.037 | 5.85 | 0.00 | 35.67 | 0.86 |
5300 | 10223 | 4.762251 | CAGATGACTATGGACATCGACCTA | 59.238 | 45.833 | 13.91 | 0.00 | 44.79 | 3.08 |
5303 | 10226 | 4.837896 | TCAGATGACTATGGACATCGAC | 57.162 | 45.455 | 13.91 | 0.00 | 44.79 | 4.20 |
5305 | 10228 | 4.442403 | CGTTTCAGATGACTATGGACATCG | 59.558 | 45.833 | 13.91 | 10.07 | 44.79 | 3.84 |
5307 | 10230 | 5.344743 | ACGTTTCAGATGACTATGGACAT | 57.655 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
5361 | 10284 | 6.873605 | TGCCTGATCCAAAGTGATATATTACG | 59.126 | 38.462 | 2.27 | 0.00 | 0.00 | 3.18 |
5431 | 10355 | 9.364989 | GTTTGCATAGAAAATAATGGCAAAGTA | 57.635 | 29.630 | 8.89 | 0.00 | 33.72 | 2.24 |
5643 | 10577 | 6.770785 | AGTCATATATACCCGCAAACAAACAT | 59.229 | 34.615 | 0.00 | 0.00 | 0.00 | 2.71 |
5668 | 10602 | 5.677319 | TGTGGGTATTTTTCCAACAACAA | 57.323 | 34.783 | 0.00 | 0.00 | 36.13 | 2.83 |
5714 | 10649 | 3.698289 | TCTAATCGAGATTCCCGGCTAT | 58.302 | 45.455 | 0.00 | 0.00 | 32.50 | 2.97 |
5720 | 10655 | 4.345547 | AGGGTCTTTCTAATCGAGATTCCC | 59.654 | 45.833 | 1.11 | 5.22 | 32.88 | 3.97 |
5766 | 10701 | 0.810016 | GTTTCTAGTCGCTCGTCCCT | 59.190 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
5768 | 10703 | 0.179142 | GGGTTTCTAGTCGCTCGTCC | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.