Multiple sequence alignment - TraesCS4B01G307400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G307400 chr4B 100.000 4697 0 0 1 4697 596773023 596777719 0.000000e+00 8674.0
1 TraesCS4B01G307400 chr4B 89.081 1154 85 8 965 2118 505263424 505262312 0.000000e+00 1395.0
2 TraesCS4B01G307400 chr4B 91.926 867 68 2 2637 3503 505262318 505261454 0.000000e+00 1212.0
3 TraesCS4B01G307400 chr4D 94.091 3148 132 26 587 3683 473854581 473857725 0.000000e+00 4734.0
4 TraesCS4B01G307400 chr4D 87.613 444 49 6 3758 4200 473858795 473859233 1.170000e-140 510.0
5 TraesCS4B01G307400 chr4D 96.855 159 5 0 424 582 473854069 473854227 2.790000e-67 267.0
6 TraesCS4B01G307400 chr4A 91.861 3047 174 32 523 3527 680450644 680453658 0.000000e+00 4185.0
7 TraesCS4B01G307400 chr4A 76.491 285 63 4 2571 2853 68959028 68959310 8.140000e-33 152.0
8 TraesCS4B01G307400 chr3A 90.947 950 58 6 965 1914 514629915 514628994 0.000000e+00 1253.0
9 TraesCS4B01G307400 chr3A 96.078 51 2 0 514 564 514630595 514630545 3.010000e-12 84.2
10 TraesCS4B01G307400 chr7A 91.003 867 71 2 2637 3503 334332458 334331599 0.000000e+00 1162.0
11 TraesCS4B01G307400 chr7A 85.141 1171 105 12 965 2118 334333570 334332452 0.000000e+00 1134.0
12 TraesCS4B01G307400 chr7A 94.611 501 26 1 4198 4697 619501770 619501270 0.000000e+00 774.0
13 TraesCS4B01G307400 chr7A 94.200 500 28 1 4199 4697 615783626 615783127 0.000000e+00 761.0
14 TraesCS4B01G307400 chr3B 95.050 505 23 2 4194 4697 696334178 696334681 0.000000e+00 793.0
15 TraesCS4B01G307400 chr3B 86.854 213 26 2 4198 4409 670359074 670358863 2.180000e-58 237.0
16 TraesCS4B01G307400 chr3B 86.854 213 26 2 4198 4409 670361610 670361399 2.180000e-58 237.0
17 TraesCS4B01G307400 chr2D 93.882 474 25 2 4200 4672 222852726 222852256 0.000000e+00 712.0
18 TraesCS4B01G307400 chrUn 91.667 504 24 2 4195 4697 136420553 136420067 0.000000e+00 682.0
19 TraesCS4B01G307400 chrUn 79.167 408 76 8 3770 4174 49408437 49408838 1.670000e-69 274.0
20 TraesCS4B01G307400 chrUn 86.301 219 28 2 4192 4409 389187091 389187308 2.180000e-58 237.0
21 TraesCS4B01G307400 chrUn 86.854 213 26 2 4198 4409 389213094 389212883 2.180000e-58 237.0
22 TraesCS4B01G307400 chr2A 79.379 354 64 9 3792 4141 678077668 678078016 1.690000e-59 241.0
23 TraesCS4B01G307400 chr2A 77.105 380 67 19 3759 4129 771490337 771489969 7.970000e-48 202.0
24 TraesCS4B01G307400 chr5B 85.024 207 29 2 165 371 490346878 490346674 4.760000e-50 209.0
25 TraesCS4B01G307400 chr5B 75.887 423 78 15 3787 4200 15753054 15752647 1.330000e-45 195.0
26 TraesCS4B01G307400 chr5B 78.070 114 21 4 2731 2842 352383989 352384100 8.430000e-08 69.4
27 TraesCS4B01G307400 chr7D 76.726 391 78 12 3790 4176 598166391 598166010 6.160000e-49 206.0
28 TraesCS4B01G307400 chr5D 80.150 267 47 6 3939 4203 175780705 175780967 1.330000e-45 195.0
29 TraesCS4B01G307400 chr5D 78.261 115 19 6 2731 2842 298144533 298144644 8.430000e-08 69.4
30 TraesCS4B01G307400 chr5D 77.679 112 21 4 2731 2840 298280784 298280675 1.090000e-06 65.8
31 TraesCS4B01G307400 chr6A 77.151 337 66 10 3787 4116 607139892 607140224 8.030000e-43 185.0
32 TraesCS4B01G307400 chr6A 77.151 337 66 10 3787 4116 607278536 607278868 8.030000e-43 185.0
33 TraesCS4B01G307400 chr2B 77.219 338 63 12 3845 4176 475742730 475743059 8.030000e-43 185.0
34 TraesCS4B01G307400 chr5A 77.679 112 21 4 2731 2840 390242813 390242704 1.090000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G307400 chr4B 596773023 596777719 4696 False 8674.0 8674 100.0000 1 4697 1 chr4B.!!$F1 4696
1 TraesCS4B01G307400 chr4B 505261454 505263424 1970 True 1303.5 1395 90.5035 965 3503 2 chr4B.!!$R1 2538
2 TraesCS4B01G307400 chr4D 473854069 473859233 5164 False 1837.0 4734 92.8530 424 4200 3 chr4D.!!$F1 3776
3 TraesCS4B01G307400 chr4A 680450644 680453658 3014 False 4185.0 4185 91.8610 523 3527 1 chr4A.!!$F2 3004
4 TraesCS4B01G307400 chr3A 514628994 514630595 1601 True 668.6 1253 93.5125 514 1914 2 chr3A.!!$R1 1400
5 TraesCS4B01G307400 chr7A 334331599 334333570 1971 True 1148.0 1162 88.0720 965 3503 2 chr7A.!!$R3 2538
6 TraesCS4B01G307400 chr7A 619501270 619501770 500 True 774.0 774 94.6110 4198 4697 1 chr7A.!!$R2 499
7 TraesCS4B01G307400 chr3B 696334178 696334681 503 False 793.0 793 95.0500 4194 4697 1 chr3B.!!$F1 503
8 TraesCS4B01G307400 chr3B 670358863 670361610 2747 True 237.0 237 86.8540 4198 4409 2 chr3B.!!$R1 211

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
378 379 0.179018 GGTAGCACCCTATTGGCCAG 60.179 60.0 5.11 0.00 37.83 4.85 F
385 386 0.179018 CCCTATTGGCCAGTAGCACC 60.179 60.0 25.88 0.00 46.50 5.01 F
1175 1918 0.324368 TGCACCCACTCGGATCTACT 60.324 55.0 0.00 0.00 34.64 2.57 F
1883 2626 0.605589 AGGTCTGCTGGTTTAACGGC 60.606 55.0 5.11 5.11 43.06 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1898 2641 1.071471 GTCCATCCCGGCCAGTATG 59.929 63.158 2.24 2.09 33.14 2.39 R
1967 2710 2.043349 TCGAAGAGCGGGATGGGA 60.043 61.111 0.00 0.00 41.33 4.37 R
2978 3741 0.605860 AGAGGTGCGTCACGTAGTCT 60.606 55.000 0.00 0.00 41.61 3.24 R
3785 5562 0.105593 CGATCCCAGCAGCTACATGT 59.894 55.000 2.69 2.69 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 9.516314 AACTTAAATGCTTTAGTCAAACTGAAC 57.484 29.630 0.00 0.00 0.00 3.18
63 64 8.682710 ACTTAAATGCTTTAGTCAAACTGAACA 58.317 29.630 0.00 0.00 0.00 3.18
64 65 9.515020 CTTAAATGCTTTAGTCAAACTGAACAA 57.485 29.630 0.00 0.00 0.00 2.83
65 66 9.862371 TTAAATGCTTTAGTCAAACTGAACAAA 57.138 25.926 0.00 0.00 0.00 2.83
66 67 8.770438 AAATGCTTTAGTCAAACTGAACAAAA 57.230 26.923 0.00 0.00 0.00 2.44
67 68 7.755582 ATGCTTTAGTCAAACTGAACAAAAC 57.244 32.000 0.00 0.00 0.00 2.43
68 69 6.919721 TGCTTTAGTCAAACTGAACAAAACT 58.080 32.000 0.00 0.00 0.00 2.66
69 70 7.375053 TGCTTTAGTCAAACTGAACAAAACTT 58.625 30.769 0.00 0.00 0.00 2.66
70 71 7.870445 TGCTTTAGTCAAACTGAACAAAACTTT 59.130 29.630 0.00 0.00 0.00 2.66
71 72 8.373256 GCTTTAGTCAAACTGAACAAAACTTTC 58.627 33.333 0.00 0.00 0.00 2.62
72 73 9.405587 CTTTAGTCAAACTGAACAAAACTTTCA 57.594 29.630 0.00 0.00 0.00 2.69
73 74 9.751542 TTTAGTCAAACTGAACAAAACTTTCAA 57.248 25.926 0.00 0.00 32.61 2.69
74 75 9.751542 TTAGTCAAACTGAACAAAACTTTCAAA 57.248 25.926 0.00 0.00 32.61 2.69
75 76 8.831715 AGTCAAACTGAACAAAACTTTCAAAT 57.168 26.923 0.00 0.00 32.61 2.32
76 77 9.921637 AGTCAAACTGAACAAAACTTTCAAATA 57.078 25.926 0.00 0.00 32.61 1.40
77 78 9.952341 GTCAAACTGAACAAAACTTTCAAATAC 57.048 29.630 0.00 0.00 32.61 1.89
78 79 9.145865 TCAAACTGAACAAAACTTTCAAATACC 57.854 29.630 0.00 0.00 32.61 2.73
79 80 8.930760 CAAACTGAACAAAACTTTCAAATACCA 58.069 29.630 0.00 0.00 32.61 3.25
80 81 9.665719 AAACTGAACAAAACTTTCAAATACCAT 57.334 25.926 0.00 0.00 32.61 3.55
81 82 8.871686 ACTGAACAAAACTTTCAAATACCATC 57.128 30.769 0.00 0.00 32.61 3.51
82 83 7.926018 ACTGAACAAAACTTTCAAATACCATCC 59.074 33.333 0.00 0.00 32.61 3.51
83 84 7.786030 TGAACAAAACTTTCAAATACCATCCA 58.214 30.769 0.00 0.00 29.89 3.41
84 85 8.260818 TGAACAAAACTTTCAAATACCATCCAA 58.739 29.630 0.00 0.00 29.89 3.53
85 86 9.103861 GAACAAAACTTTCAAATACCATCCAAA 57.896 29.630 0.00 0.00 0.00 3.28
86 87 8.432110 ACAAAACTTTCAAATACCATCCAAAC 57.568 30.769 0.00 0.00 0.00 2.93
87 88 8.264347 ACAAAACTTTCAAATACCATCCAAACT 58.736 29.630 0.00 0.00 0.00 2.66
88 89 9.108284 CAAAACTTTCAAATACCATCCAAACTT 57.892 29.630 0.00 0.00 0.00 2.66
89 90 9.679661 AAAACTTTCAAATACCATCCAAACTTT 57.320 25.926 0.00 0.00 0.00 2.66
101 102 8.721133 ACCATCCAAACTTTAATTTTCCTAGT 57.279 30.769 0.00 0.00 0.00 2.57
102 103 9.816787 ACCATCCAAACTTTAATTTTCCTAGTA 57.183 29.630 0.00 0.00 0.00 1.82
111 112 8.427276 ACTTTAATTTTCCTAGTATACCCTCCG 58.573 37.037 0.00 0.00 0.00 4.63
112 113 8.551682 TTTAATTTTCCTAGTATACCCTCCGA 57.448 34.615 0.00 0.00 0.00 4.55
113 114 8.551682 TTAATTTTCCTAGTATACCCTCCGAA 57.448 34.615 0.00 0.00 0.00 4.30
114 115 5.859205 TTTTCCTAGTATACCCTCCGAAC 57.141 43.478 0.00 0.00 0.00 3.95
115 116 4.524802 TTCCTAGTATACCCTCCGAACA 57.475 45.455 0.00 0.00 0.00 3.18
116 117 4.736611 TCCTAGTATACCCTCCGAACAT 57.263 45.455 0.00 0.00 0.00 2.71
117 118 5.848286 TCCTAGTATACCCTCCGAACATA 57.152 43.478 0.00 0.00 0.00 2.29
118 119 5.813383 TCCTAGTATACCCTCCGAACATAG 58.187 45.833 0.00 0.00 0.00 2.23
119 120 5.549228 TCCTAGTATACCCTCCGAACATAGA 59.451 44.000 0.00 0.00 0.00 1.98
120 121 6.044754 TCCTAGTATACCCTCCGAACATAGAA 59.955 42.308 0.00 0.00 0.00 2.10
121 122 6.890814 CCTAGTATACCCTCCGAACATAGAAT 59.109 42.308 0.00 0.00 0.00 2.40
122 123 7.396623 CCTAGTATACCCTCCGAACATAGAATT 59.603 40.741 0.00 0.00 0.00 2.17
123 124 9.458727 CTAGTATACCCTCCGAACATAGAATTA 57.541 37.037 0.00 0.00 0.00 1.40
124 125 8.716674 AGTATACCCTCCGAACATAGAATTAA 57.283 34.615 0.00 0.00 0.00 1.40
125 126 9.151177 AGTATACCCTCCGAACATAGAATTAAA 57.849 33.333 0.00 0.00 0.00 1.52
126 127 9.939802 GTATACCCTCCGAACATAGAATTAAAT 57.060 33.333 0.00 0.00 0.00 1.40
129 130 8.030913 ACCCTCCGAACATAGAATTAAATAGT 57.969 34.615 0.00 0.00 0.00 2.12
130 131 9.151177 ACCCTCCGAACATAGAATTAAATAGTA 57.849 33.333 0.00 0.00 0.00 1.82
131 132 9.420551 CCCTCCGAACATAGAATTAAATAGTAC 57.579 37.037 0.00 0.00 0.00 2.73
132 133 9.420551 CCTCCGAACATAGAATTAAATAGTACC 57.579 37.037 0.00 0.00 0.00 3.34
133 134 9.976511 CTCCGAACATAGAATTAAATAGTACCA 57.023 33.333 0.00 0.00 0.00 3.25
134 135 9.976511 TCCGAACATAGAATTAAATAGTACCAG 57.023 33.333 0.00 0.00 0.00 4.00
135 136 9.204570 CCGAACATAGAATTAAATAGTACCAGG 57.795 37.037 0.00 0.00 0.00 4.45
136 137 8.709646 CGAACATAGAATTAAATAGTACCAGGC 58.290 37.037 0.00 0.00 0.00 4.85
137 138 8.603242 AACATAGAATTAAATAGTACCAGGCG 57.397 34.615 0.00 0.00 0.00 5.52
138 139 7.732996 ACATAGAATTAAATAGTACCAGGCGT 58.267 34.615 0.00 0.00 0.00 5.68
139 140 8.863086 ACATAGAATTAAATAGTACCAGGCGTA 58.137 33.333 0.00 0.00 0.00 4.42
140 141 9.355215 CATAGAATTAAATAGTACCAGGCGTAG 57.645 37.037 0.00 0.00 0.00 3.51
155 156 2.515926 CGTAGCAGGCATATCACAGT 57.484 50.000 0.00 0.00 0.00 3.55
156 157 2.398498 CGTAGCAGGCATATCACAGTC 58.602 52.381 0.00 0.00 0.00 3.51
157 158 2.223805 CGTAGCAGGCATATCACAGTCA 60.224 50.000 0.00 0.00 0.00 3.41
158 159 3.737972 CGTAGCAGGCATATCACAGTCAA 60.738 47.826 0.00 0.00 0.00 3.18
159 160 2.636830 AGCAGGCATATCACAGTCAAC 58.363 47.619 0.00 0.00 0.00 3.18
160 161 2.026915 AGCAGGCATATCACAGTCAACA 60.027 45.455 0.00 0.00 0.00 3.33
161 162 2.353889 GCAGGCATATCACAGTCAACAG 59.646 50.000 0.00 0.00 0.00 3.16
162 163 3.865446 CAGGCATATCACAGTCAACAGA 58.135 45.455 0.00 0.00 0.00 3.41
163 164 4.256110 CAGGCATATCACAGTCAACAGAA 58.744 43.478 0.00 0.00 0.00 3.02
164 165 4.696877 CAGGCATATCACAGTCAACAGAAA 59.303 41.667 0.00 0.00 0.00 2.52
165 166 5.181811 CAGGCATATCACAGTCAACAGAAAA 59.818 40.000 0.00 0.00 0.00 2.29
166 167 5.769662 AGGCATATCACAGTCAACAGAAAAA 59.230 36.000 0.00 0.00 0.00 1.94
185 186 4.357918 AAAATATCAGATGCTACCGGCT 57.642 40.909 0.00 0.00 42.39 5.52
186 187 3.601443 AATATCAGATGCTACCGGCTC 57.399 47.619 0.00 0.00 42.39 4.70
187 188 2.294449 TATCAGATGCTACCGGCTCT 57.706 50.000 0.00 0.00 42.39 4.09
188 189 1.418334 ATCAGATGCTACCGGCTCTT 58.582 50.000 0.00 0.00 42.39 2.85
189 190 2.067365 TCAGATGCTACCGGCTCTTA 57.933 50.000 0.00 0.00 42.39 2.10
190 191 1.957177 TCAGATGCTACCGGCTCTTAG 59.043 52.381 0.00 0.00 42.39 2.18
191 192 1.957177 CAGATGCTACCGGCTCTTAGA 59.043 52.381 0.00 0.00 42.39 2.10
192 193 2.560542 CAGATGCTACCGGCTCTTAGAT 59.439 50.000 0.00 0.00 42.39 1.98
193 194 2.560542 AGATGCTACCGGCTCTTAGATG 59.439 50.000 0.00 0.00 42.39 2.90
194 195 1.040646 TGCTACCGGCTCTTAGATGG 58.959 55.000 0.00 0.00 42.39 3.51
195 196 1.041437 GCTACCGGCTCTTAGATGGT 58.959 55.000 0.00 6.28 38.06 3.55
196 197 2.236766 GCTACCGGCTCTTAGATGGTA 58.763 52.381 0.00 7.57 38.06 3.25
197 198 2.030096 GCTACCGGCTCTTAGATGGTAC 60.030 54.545 0.00 0.00 38.06 3.34
198 199 1.411041 ACCGGCTCTTAGATGGTACC 58.589 55.000 4.43 4.43 0.00 3.34
199 200 1.342674 ACCGGCTCTTAGATGGTACCA 60.343 52.381 18.99 18.99 0.00 3.25
200 201 1.971357 CCGGCTCTTAGATGGTACCAT 59.029 52.381 27.70 27.70 39.69 3.55
201 202 2.289072 CCGGCTCTTAGATGGTACCATG 60.289 54.545 32.07 17.10 36.70 3.66
202 203 2.628178 CGGCTCTTAGATGGTACCATGA 59.372 50.000 32.07 20.26 36.70 3.07
203 204 3.259374 CGGCTCTTAGATGGTACCATGAT 59.741 47.826 32.07 21.08 36.70 2.45
204 205 4.462834 CGGCTCTTAGATGGTACCATGATA 59.537 45.833 32.07 20.06 36.70 2.15
205 206 5.622460 CGGCTCTTAGATGGTACCATGATAC 60.622 48.000 32.07 16.95 36.70 2.24
206 207 5.246203 GGCTCTTAGATGGTACCATGATACA 59.754 44.000 32.07 11.58 36.70 2.29
207 208 6.393990 GCTCTTAGATGGTACCATGATACAG 58.606 44.000 32.07 20.35 36.70 2.74
208 209 6.573289 GCTCTTAGATGGTACCATGATACAGG 60.573 46.154 32.07 15.80 36.70 4.00
209 210 5.246203 TCTTAGATGGTACCATGATACAGGC 59.754 44.000 32.07 14.37 36.70 4.85
210 211 3.317406 AGATGGTACCATGATACAGGCA 58.683 45.455 32.07 0.00 36.70 4.75
211 212 3.912528 AGATGGTACCATGATACAGGCAT 59.087 43.478 32.07 3.75 36.70 4.40
212 213 3.769739 TGGTACCATGATACAGGCATC 57.230 47.619 11.60 0.00 0.00 3.91
213 214 2.371841 TGGTACCATGATACAGGCATCC 59.628 50.000 11.60 0.00 0.00 3.51
214 215 2.371841 GGTACCATGATACAGGCATCCA 59.628 50.000 7.15 0.00 0.00 3.41
215 216 2.945080 ACCATGATACAGGCATCCAG 57.055 50.000 0.00 0.00 0.00 3.86
216 217 1.422781 ACCATGATACAGGCATCCAGG 59.577 52.381 0.00 0.00 0.00 4.45
217 218 1.701292 CCATGATACAGGCATCCAGGA 59.299 52.381 0.00 0.00 0.00 3.86
218 219 2.290134 CCATGATACAGGCATCCAGGAG 60.290 54.545 0.00 0.00 0.00 3.69
219 220 0.761187 TGATACAGGCATCCAGGAGC 59.239 55.000 0.00 0.00 0.00 4.70
227 228 2.875094 GCATCCAGGAGCCATTAGAT 57.125 50.000 0.00 0.00 0.00 1.98
228 229 2.709213 GCATCCAGGAGCCATTAGATC 58.291 52.381 0.00 0.00 0.00 2.75
229 230 2.305343 GCATCCAGGAGCCATTAGATCT 59.695 50.000 0.00 0.00 0.00 2.75
230 231 3.869140 GCATCCAGGAGCCATTAGATCTG 60.869 52.174 5.18 0.00 0.00 2.90
231 232 3.334910 TCCAGGAGCCATTAGATCTGA 57.665 47.619 5.18 0.00 0.00 3.27
232 233 3.237746 TCCAGGAGCCATTAGATCTGAG 58.762 50.000 5.18 0.00 0.00 3.35
233 234 3.116977 TCCAGGAGCCATTAGATCTGAGA 60.117 47.826 5.18 0.00 0.00 3.27
234 235 3.839490 CCAGGAGCCATTAGATCTGAGAT 59.161 47.826 5.18 0.00 0.00 2.75
235 236 4.081531 CCAGGAGCCATTAGATCTGAGATC 60.082 50.000 14.47 14.47 0.00 2.75
236 237 4.081531 CAGGAGCCATTAGATCTGAGATCC 60.082 50.000 18.29 8.69 0.00 3.36
237 238 3.837146 GGAGCCATTAGATCTGAGATCCA 59.163 47.826 18.29 2.29 0.00 3.41
238 239 4.285517 GGAGCCATTAGATCTGAGATCCAA 59.714 45.833 18.29 12.06 0.00 3.53
239 240 5.226194 AGCCATTAGATCTGAGATCCAAC 57.774 43.478 18.29 0.80 0.00 3.77
240 241 3.993081 GCCATTAGATCTGAGATCCAACG 59.007 47.826 18.29 4.32 0.00 4.10
241 242 4.564041 CCATTAGATCTGAGATCCAACGG 58.436 47.826 18.29 9.90 0.00 4.44
242 243 3.735237 TTAGATCTGAGATCCAACGGC 57.265 47.619 18.29 0.00 0.00 5.68
243 244 1.489481 AGATCTGAGATCCAACGGCA 58.511 50.000 18.29 0.00 0.00 5.69
244 245 2.045524 AGATCTGAGATCCAACGGCAT 58.954 47.619 18.29 0.00 0.00 4.40
245 246 3.234353 AGATCTGAGATCCAACGGCATA 58.766 45.455 18.29 0.00 0.00 3.14
246 247 3.837146 AGATCTGAGATCCAACGGCATAT 59.163 43.478 18.29 0.00 0.00 1.78
247 248 3.391506 TCTGAGATCCAACGGCATATG 57.608 47.619 0.00 0.00 0.00 1.78
248 249 2.965147 TCTGAGATCCAACGGCATATGA 59.035 45.455 6.97 0.00 0.00 2.15
249 250 3.006217 TCTGAGATCCAACGGCATATGAG 59.994 47.826 6.97 1.79 0.00 2.90
250 251 2.965147 TGAGATCCAACGGCATATGAGA 59.035 45.455 6.97 0.00 0.00 3.27
251 252 3.387699 TGAGATCCAACGGCATATGAGAA 59.612 43.478 6.97 0.00 0.00 2.87
252 253 3.993081 GAGATCCAACGGCATATGAGAAG 59.007 47.826 6.97 0.00 0.00 2.85
253 254 1.953559 TCCAACGGCATATGAGAAGC 58.046 50.000 6.97 0.00 0.00 3.86
254 255 1.486310 TCCAACGGCATATGAGAAGCT 59.514 47.619 6.97 0.00 0.00 3.74
255 256 2.698274 TCCAACGGCATATGAGAAGCTA 59.302 45.455 6.97 0.00 0.00 3.32
256 257 3.324846 TCCAACGGCATATGAGAAGCTAT 59.675 43.478 6.97 0.00 0.00 2.97
257 258 4.067896 CCAACGGCATATGAGAAGCTATT 58.932 43.478 6.97 0.00 0.00 1.73
258 259 4.083643 CCAACGGCATATGAGAAGCTATTG 60.084 45.833 6.97 0.26 0.00 1.90
259 260 4.342862 ACGGCATATGAGAAGCTATTGT 57.657 40.909 6.97 0.00 0.00 2.71
260 261 5.468540 ACGGCATATGAGAAGCTATTGTA 57.531 39.130 6.97 0.00 0.00 2.41
261 262 6.042638 ACGGCATATGAGAAGCTATTGTAT 57.957 37.500 6.97 0.00 0.00 2.29
262 263 6.102663 ACGGCATATGAGAAGCTATTGTATC 58.897 40.000 6.97 0.00 0.00 2.24
263 264 6.071108 ACGGCATATGAGAAGCTATTGTATCT 60.071 38.462 6.97 0.00 0.00 1.98
264 265 6.255237 CGGCATATGAGAAGCTATTGTATCTG 59.745 42.308 6.97 0.00 0.00 2.90
265 266 7.102346 GGCATATGAGAAGCTATTGTATCTGT 58.898 38.462 6.97 0.00 0.00 3.41
266 267 7.064371 GGCATATGAGAAGCTATTGTATCTGTG 59.936 40.741 6.97 0.00 0.00 3.66
267 268 7.412781 GCATATGAGAAGCTATTGTATCTGTGC 60.413 40.741 6.97 0.00 0.00 4.57
268 269 4.363138 TGAGAAGCTATTGTATCTGTGCG 58.637 43.478 0.00 0.00 0.00 5.34
269 270 3.126831 AGAAGCTATTGTATCTGTGCGC 58.873 45.455 0.00 0.00 0.00 6.09
270 271 2.602257 AGCTATTGTATCTGTGCGCA 57.398 45.000 5.66 5.66 0.00 6.09
271 272 2.905075 AGCTATTGTATCTGTGCGCAA 58.095 42.857 14.00 0.00 0.00 4.85
272 273 3.470709 AGCTATTGTATCTGTGCGCAAT 58.529 40.909 14.00 4.64 35.90 3.56
273 274 3.879295 AGCTATTGTATCTGTGCGCAATT 59.121 39.130 14.00 0.00 34.05 2.32
274 275 4.336433 AGCTATTGTATCTGTGCGCAATTT 59.664 37.500 14.00 0.00 34.05 1.82
275 276 5.036737 GCTATTGTATCTGTGCGCAATTTT 58.963 37.500 14.00 0.00 34.05 1.82
276 277 5.172053 GCTATTGTATCTGTGCGCAATTTTC 59.828 40.000 14.00 0.00 34.05 2.29
277 278 3.485947 TGTATCTGTGCGCAATTTTCC 57.514 42.857 14.00 0.00 0.00 3.13
278 279 2.159585 TGTATCTGTGCGCAATTTTCCG 60.160 45.455 14.00 0.00 0.00 4.30
279 280 1.164411 ATCTGTGCGCAATTTTCCGA 58.836 45.000 14.00 0.79 0.00 4.55
280 281 0.237235 TCTGTGCGCAATTTTCCGAC 59.763 50.000 14.00 0.00 0.00 4.79
281 282 0.238289 CTGTGCGCAATTTTCCGACT 59.762 50.000 14.00 0.00 0.00 4.18
282 283 0.237235 TGTGCGCAATTTTCCGACTC 59.763 50.000 14.00 0.00 0.00 3.36
283 284 0.517316 GTGCGCAATTTTCCGACTCT 59.483 50.000 14.00 0.00 0.00 3.24
284 285 1.730064 GTGCGCAATTTTCCGACTCTA 59.270 47.619 14.00 0.00 0.00 2.43
285 286 1.999735 TGCGCAATTTTCCGACTCTAG 59.000 47.619 8.16 0.00 0.00 2.43
286 287 1.327764 GCGCAATTTTCCGACTCTAGG 59.672 52.381 0.30 0.00 0.00 3.02
287 288 2.888594 CGCAATTTTCCGACTCTAGGA 58.111 47.619 0.00 0.00 35.69 2.94
288 289 3.458189 CGCAATTTTCCGACTCTAGGAT 58.542 45.455 0.00 0.00 37.65 3.24
289 290 3.871594 CGCAATTTTCCGACTCTAGGATT 59.128 43.478 0.00 0.00 37.65 3.01
290 291 4.332819 CGCAATTTTCCGACTCTAGGATTT 59.667 41.667 0.00 0.00 37.65 2.17
291 292 5.163754 CGCAATTTTCCGACTCTAGGATTTT 60.164 40.000 0.00 0.00 37.65 1.82
292 293 6.036735 CGCAATTTTCCGACTCTAGGATTTTA 59.963 38.462 0.00 0.00 37.65 1.52
293 294 7.254795 CGCAATTTTCCGACTCTAGGATTTTAT 60.255 37.037 0.00 0.00 37.65 1.40
294 295 8.406297 GCAATTTTCCGACTCTAGGATTTTATT 58.594 33.333 0.00 0.00 37.65 1.40
299 300 8.857694 TTCCGACTCTAGGATTTTATTTTTGT 57.142 30.769 0.00 0.00 37.65 2.83
300 301 9.947433 TTCCGACTCTAGGATTTTATTTTTGTA 57.053 29.630 0.00 0.00 37.65 2.41
301 302 9.374838 TCCGACTCTAGGATTTTATTTTTGTAC 57.625 33.333 0.00 0.00 31.86 2.90
302 303 9.158233 CCGACTCTAGGATTTTATTTTTGTACA 57.842 33.333 0.00 0.00 0.00 2.90
317 318 8.947055 ATTTTTGTACAATGTTCAAAAGCTCT 57.053 26.923 23.04 11.94 41.26 4.09
318 319 7.985634 TTTTGTACAATGTTCAAAAGCTCTC 57.014 32.000 21.36 0.00 37.68 3.20
319 320 6.691754 TTGTACAATGTTCAAAAGCTCTCA 57.308 33.333 3.59 0.00 0.00 3.27
320 321 6.304356 TGTACAATGTTCAAAAGCTCTCAG 57.696 37.500 0.00 0.00 0.00 3.35
321 322 4.843220 ACAATGTTCAAAAGCTCTCAGG 57.157 40.909 0.00 0.00 0.00 3.86
322 323 3.571401 ACAATGTTCAAAAGCTCTCAGGG 59.429 43.478 0.00 0.00 0.00 4.45
323 324 3.795688 ATGTTCAAAAGCTCTCAGGGA 57.204 42.857 0.00 0.00 0.00 4.20
324 325 3.576078 TGTTCAAAAGCTCTCAGGGAA 57.424 42.857 0.00 0.00 0.00 3.97
325 326 3.214328 TGTTCAAAAGCTCTCAGGGAAC 58.786 45.455 0.00 0.00 35.09 3.62
342 343 4.270245 GGAACCATCAGATCTGAGATCC 57.730 50.000 28.26 24.90 43.61 3.36
343 344 3.645212 GGAACCATCAGATCTGAGATCCA 59.355 47.826 28.26 6.78 43.61 3.41
344 345 4.102210 GGAACCATCAGATCTGAGATCCAA 59.898 45.833 28.26 7.74 43.61 3.53
345 346 4.686191 ACCATCAGATCTGAGATCCAAC 57.314 45.455 28.26 0.00 43.61 3.77
346 347 3.069300 ACCATCAGATCTGAGATCCAACG 59.931 47.826 28.26 12.32 43.61 4.10
347 348 3.554544 CCATCAGATCTGAGATCCAACGG 60.555 52.174 28.26 14.57 43.61 4.44
348 349 1.410517 TCAGATCTGAGATCCAACGGC 59.589 52.381 21.67 0.00 34.14 5.68
349 350 0.755686 AGATCTGAGATCCAACGGCC 59.244 55.000 18.29 0.00 0.00 6.13
350 351 0.250081 GATCTGAGATCCAACGGCCC 60.250 60.000 11.36 0.00 0.00 5.80
351 352 0.982852 ATCTGAGATCCAACGGCCCA 60.983 55.000 0.00 0.00 0.00 5.36
352 353 1.198094 TCTGAGATCCAACGGCCCAA 61.198 55.000 0.00 0.00 0.00 4.12
353 354 0.745845 CTGAGATCCAACGGCCCAAG 60.746 60.000 0.00 0.00 0.00 3.61
354 355 1.198094 TGAGATCCAACGGCCCAAGA 61.198 55.000 0.00 0.00 0.00 3.02
355 356 0.462759 GAGATCCAACGGCCCAAGAG 60.463 60.000 0.00 0.00 0.00 2.85
356 357 2.044946 ATCCAACGGCCCAAGAGC 60.045 61.111 0.00 0.00 0.00 4.09
364 365 4.858680 GCCCAAGAGCCCGGTAGC 62.859 72.222 0.00 0.00 0.00 3.58
365 366 3.399181 CCCAAGAGCCCGGTAGCA 61.399 66.667 0.00 0.00 34.23 3.49
366 367 2.125106 CCAAGAGCCCGGTAGCAC 60.125 66.667 0.00 0.00 34.23 4.40
367 368 2.125106 CAAGAGCCCGGTAGCACC 60.125 66.667 0.00 0.00 34.23 5.01
368 369 3.400054 AAGAGCCCGGTAGCACCC 61.400 66.667 0.00 0.00 33.75 4.61
369 370 3.925914 AAGAGCCCGGTAGCACCCT 62.926 63.158 0.00 0.00 33.75 4.34
370 371 2.443390 GAGCCCGGTAGCACCCTA 60.443 66.667 0.00 0.00 33.75 3.53
371 372 1.837499 GAGCCCGGTAGCACCCTAT 60.837 63.158 0.00 0.00 33.75 2.57
372 373 1.384082 AGCCCGGTAGCACCCTATT 60.384 57.895 0.00 0.00 33.75 1.73
373 374 1.227853 GCCCGGTAGCACCCTATTG 60.228 63.158 0.00 0.00 33.75 1.90
374 375 1.450211 CCCGGTAGCACCCTATTGG 59.550 63.158 0.00 0.00 33.75 3.16
375 376 1.227853 CCGGTAGCACCCTATTGGC 60.228 63.158 0.00 0.00 37.83 4.52
376 377 1.227853 CGGTAGCACCCTATTGGCC 60.228 63.158 0.00 0.00 37.83 5.36
377 378 1.919771 GGTAGCACCCTATTGGCCA 59.080 57.895 0.00 0.00 37.83 5.36
378 379 0.179018 GGTAGCACCCTATTGGCCAG 60.179 60.000 5.11 0.00 37.83 4.85
379 380 0.546598 GTAGCACCCTATTGGCCAGT 59.453 55.000 5.11 5.52 37.83 4.00
380 381 1.766496 GTAGCACCCTATTGGCCAGTA 59.234 52.381 5.11 6.68 37.83 2.74
381 382 0.839946 AGCACCCTATTGGCCAGTAG 59.160 55.000 24.68 24.68 37.83 2.57
382 383 0.819666 GCACCCTATTGGCCAGTAGC 60.820 60.000 25.88 14.25 42.60 3.58
383 384 0.546122 CACCCTATTGGCCAGTAGCA 59.454 55.000 25.88 2.85 46.50 3.49
384 385 0.546598 ACCCTATTGGCCAGTAGCAC 59.453 55.000 25.88 0.00 46.50 4.40
385 386 0.179018 CCCTATTGGCCAGTAGCACC 60.179 60.000 25.88 0.00 46.50 5.01
386 387 0.839946 CCTATTGGCCAGTAGCACCT 59.160 55.000 25.88 0.03 46.50 4.00
387 388 1.212935 CCTATTGGCCAGTAGCACCTT 59.787 52.381 25.88 0.00 46.50 3.50
388 389 2.292267 CTATTGGCCAGTAGCACCTTG 58.708 52.381 20.99 0.00 46.50 3.61
389 390 0.698238 ATTGGCCAGTAGCACCTTGA 59.302 50.000 5.11 0.00 46.50 3.02
390 391 0.698238 TTGGCCAGTAGCACCTTGAT 59.302 50.000 5.11 0.00 46.50 2.57
391 392 1.578897 TGGCCAGTAGCACCTTGATA 58.421 50.000 0.00 0.00 46.50 2.15
392 393 1.209504 TGGCCAGTAGCACCTTGATAC 59.790 52.381 0.00 0.00 46.50 2.24
394 395 2.092914 GGCCAGTAGCACCTTGATACTT 60.093 50.000 0.00 0.00 46.18 2.24
395 396 3.610911 GCCAGTAGCACCTTGATACTTT 58.389 45.455 1.38 0.00 46.18 2.66
396 397 3.623510 GCCAGTAGCACCTTGATACTTTC 59.376 47.826 1.38 0.00 46.18 2.62
397 398 4.832248 CCAGTAGCACCTTGATACTTTCA 58.168 43.478 1.38 0.00 46.18 2.69
398 399 5.431765 CCAGTAGCACCTTGATACTTTCAT 58.568 41.667 1.38 0.00 46.18 2.57
399 400 5.525378 CCAGTAGCACCTTGATACTTTCATC 59.475 44.000 1.38 0.00 46.18 2.92
400 401 6.108687 CAGTAGCACCTTGATACTTTCATCA 58.891 40.000 1.38 0.00 46.18 3.07
401 402 6.036517 CAGTAGCACCTTGATACTTTCATCAC 59.963 42.308 1.38 0.00 46.18 3.06
402 403 4.910195 AGCACCTTGATACTTTCATCACA 58.090 39.130 0.00 0.00 34.69 3.58
403 404 5.316167 AGCACCTTGATACTTTCATCACAA 58.684 37.500 0.00 0.00 34.69 3.33
404 405 5.948162 AGCACCTTGATACTTTCATCACAAT 59.052 36.000 0.00 0.00 34.69 2.71
405 406 6.032094 GCACCTTGATACTTTCATCACAATG 58.968 40.000 0.00 0.00 34.69 2.82
406 407 6.127925 GCACCTTGATACTTTCATCACAATGA 60.128 38.462 0.00 0.00 40.18 2.57
407 408 7.415989 GCACCTTGATACTTTCATCACAATGAT 60.416 37.037 0.00 0.00 41.49 2.45
408 409 9.112725 CACCTTGATACTTTCATCACAATGATA 57.887 33.333 0.00 0.00 41.49 2.15
409 410 9.685276 ACCTTGATACTTTCATCACAATGATAA 57.315 29.630 0.00 0.00 41.49 1.75
413 414 9.955208 TGATACTTTCATCACAATGATAAATGC 57.045 29.630 0.00 0.00 41.49 3.56
414 415 9.110617 GATACTTTCATCACAATGATAAATGCG 57.889 33.333 0.00 0.00 41.49 4.73
415 416 5.745294 ACTTTCATCACAATGATAAATGCGC 59.255 36.000 0.00 0.00 41.49 6.09
416 417 5.503662 TTCATCACAATGATAAATGCGCT 57.496 34.783 9.73 0.00 41.49 5.92
417 418 4.851010 TCATCACAATGATAAATGCGCTG 58.149 39.130 9.73 0.00 36.98 5.18
418 419 3.696281 TCACAATGATAAATGCGCTGG 57.304 42.857 9.73 0.00 0.00 4.85
419 420 3.016031 TCACAATGATAAATGCGCTGGT 58.984 40.909 9.73 0.00 0.00 4.00
420 421 3.110358 CACAATGATAAATGCGCTGGTG 58.890 45.455 9.73 0.00 0.00 4.17
421 422 2.121786 CAATGATAAATGCGCTGGTGC 58.878 47.619 9.73 0.00 0.00 5.01
469 470 1.232621 CCACGCATCGCATCCATCAT 61.233 55.000 0.00 0.00 0.00 2.45
529 530 1.654220 GCGCAACAGAAGCAAGGAA 59.346 52.632 0.30 0.00 0.00 3.36
642 992 2.427245 CCGTCGTCGTGTTGCGTA 60.427 61.111 0.71 0.00 42.13 4.42
643 993 2.423031 CCGTCGTCGTGTTGCGTAG 61.423 63.158 0.71 0.00 42.13 3.51
675 1033 1.061131 CGCGCTGAACAATTACTCCTG 59.939 52.381 5.56 0.00 0.00 3.86
677 1035 2.076100 CGCTGAACAATTACTCCTGCA 58.924 47.619 0.00 0.00 0.00 4.41
682 1040 4.242475 TGAACAATTACTCCTGCACTACG 58.758 43.478 0.00 0.00 0.00 3.51
693 1055 3.195041 GCACTACGCACAGAACAGA 57.805 52.632 0.00 0.00 41.79 3.41
741 1109 1.303074 TCTCTACCCGTGTCTGCGT 60.303 57.895 0.00 0.00 0.00 5.24
755 1123 1.006832 CTGCGTCATTAAGGAACCCG 58.993 55.000 0.00 0.00 0.00 5.28
773 1417 2.202544 GCGTCAGTCAGAGCTCGG 60.203 66.667 8.37 7.99 0.00 4.63
774 1418 2.691771 GCGTCAGTCAGAGCTCGGA 61.692 63.158 12.88 12.88 0.00 4.55
777 1421 1.003718 TCAGTCAGAGCTCGGACGA 60.004 57.895 32.16 28.27 44.06 4.20
778 1422 1.135731 CAGTCAGAGCTCGGACGAC 59.864 63.158 32.16 23.89 44.06 4.34
779 1423 2.098680 GTCAGAGCTCGGACGACG 59.901 66.667 27.37 4.09 46.11 5.12
963 1700 1.134401 ACCGTGCATTCCGATGAATCT 60.134 47.619 0.00 0.00 39.20 2.40
979 1716 3.303938 GAATCTCACCTCTCCATCTCCA 58.696 50.000 0.00 0.00 0.00 3.86
1005 1742 1.299316 CGTTGCAAACCACAGCAGG 60.299 57.895 0.00 0.00 46.28 4.85
1061 1801 2.286523 CCTCCACCTGTTCGCCTCT 61.287 63.158 0.00 0.00 0.00 3.69
1175 1918 0.324368 TGCACCCACTCGGATCTACT 60.324 55.000 0.00 0.00 34.64 2.57
1216 1959 4.293648 CGACCACGACTGGCACCA 62.294 66.667 0.00 0.00 42.08 4.17
1249 1992 0.678048 AAATCCGTGCCTTCCTCAGC 60.678 55.000 0.00 0.00 0.00 4.26
1427 2170 2.027625 GCTGCACACCACGTACTCC 61.028 63.158 0.00 0.00 0.00 3.85
1631 2374 4.719616 GCGACGAACTGCAACCGC 62.720 66.667 0.00 0.00 39.24 5.68
1877 2620 1.878953 CGTACAAGGTCTGCTGGTTT 58.121 50.000 0.00 0.00 0.00 3.27
1883 2626 0.605589 AGGTCTGCTGGTTTAACGGC 60.606 55.000 5.11 5.11 43.06 5.68
1904 2647 1.134995 TGCTTCAGCTCCGACATACTG 60.135 52.381 0.00 0.00 42.66 2.74
1928 2671 4.451150 ATGGACGATGCGGTGCGT 62.451 61.111 0.00 0.00 44.33 5.24
1958 2701 2.286523 CGTGCTGTCCCTCTCCCTT 61.287 63.158 0.00 0.00 0.00 3.95
1967 2710 2.352805 CTCTCCCTTGGCGGCTTT 59.647 61.111 11.43 0.00 0.00 3.51
2223 2986 3.366883 CGATTTGAAAAATGGCGGGAAGA 60.367 43.478 0.00 0.00 0.00 2.87
2381 3144 3.431725 GTGAAAGAAGCGGGCGGG 61.432 66.667 0.00 0.00 0.00 6.13
2883 3646 2.100797 CGATAACCGACGGCGACA 59.899 61.111 15.16 0.00 41.76 4.35
2978 3741 3.120979 CTACGACATCGAGCCGGCA 62.121 63.158 31.54 8.70 43.02 5.69
3473 4239 2.186903 GCGGCTTGCTGGTAGCTA 59.813 61.111 3.48 0.00 42.97 3.32
3541 4307 5.952947 CCGATGATATTAGTAGTTCCCCTCT 59.047 44.000 0.00 0.00 0.00 3.69
3545 4311 7.598759 TGATATTAGTAGTTCCCCTCTGAAC 57.401 40.000 0.00 0.00 43.95 3.18
3556 4322 2.889200 CTCTGAACTAGAGCGGGGT 58.111 57.895 0.00 0.00 45.94 4.95
3559 4325 1.562942 TCTGAACTAGAGCGGGGTAGA 59.437 52.381 0.00 0.00 0.00 2.59
3560 4326 2.025605 TCTGAACTAGAGCGGGGTAGAA 60.026 50.000 0.00 0.00 0.00 2.10
3624 4406 6.600427 GCCCAAAATTCCAAATCATCTCAATT 59.400 34.615 0.00 0.00 0.00 2.32
3669 4451 4.325972 TGCATATCTCTTGTGCAACTGAA 58.674 39.130 0.00 0.00 44.99 3.02
3683 4465 6.712095 TGTGCAACTGAAAGAAGAGAATACAT 59.288 34.615 0.00 0.00 38.04 2.29
3685 4467 6.026513 GCAACTGAAAGAAGAGAATACATGC 58.973 40.000 0.00 0.00 37.43 4.06
3687 4469 7.587629 CAACTGAAAGAAGAGAATACATGCAA 58.412 34.615 0.00 0.00 37.43 4.08
3688 4470 7.138692 ACTGAAAGAAGAGAATACATGCAAC 57.861 36.000 0.00 0.00 37.43 4.17
3689 4471 6.712095 ACTGAAAGAAGAGAATACATGCAACA 59.288 34.615 0.00 0.00 37.43 3.33
3690 4472 6.902341 TGAAAGAAGAGAATACATGCAACAC 58.098 36.000 0.00 0.00 0.00 3.32
3691 4473 5.886960 AAGAAGAGAATACATGCAACACC 57.113 39.130 0.00 0.00 0.00 4.16
3694 4476 2.027192 AGAGAATACATGCAACACCGGT 60.027 45.455 0.00 0.00 0.00 5.28
3695 4477 2.747446 GAGAATACATGCAACACCGGTT 59.253 45.455 2.97 0.00 37.87 4.44
3707 4489 2.365582 ACACCGGTTGAGATAAATGCC 58.634 47.619 2.97 0.00 0.00 4.40
3708 4490 1.676006 CACCGGTTGAGATAAATGCCC 59.324 52.381 2.97 0.00 0.00 5.36
3709 4491 1.283613 ACCGGTTGAGATAAATGCCCA 59.716 47.619 0.00 0.00 0.00 5.36
3710 4492 2.291282 ACCGGTTGAGATAAATGCCCAA 60.291 45.455 0.00 0.00 0.00 4.12
3711 4493 2.358898 CCGGTTGAGATAAATGCCCAAG 59.641 50.000 0.00 0.00 0.00 3.61
3712 4494 3.278574 CGGTTGAGATAAATGCCCAAGA 58.721 45.455 0.00 0.00 0.00 3.02
3714 4496 3.067320 GGTTGAGATAAATGCCCAAGAGC 59.933 47.826 0.00 0.00 0.00 4.09
3722 4504 1.075305 TGCCCAAGAGCAAGCATGA 59.925 52.632 0.00 0.00 40.56 3.07
3723 4505 0.323999 TGCCCAAGAGCAAGCATGAT 60.324 50.000 0.00 0.00 40.56 2.45
3724 4506 0.102481 GCCCAAGAGCAAGCATGATG 59.898 55.000 0.00 0.00 0.00 3.07
3725 4507 1.758936 CCCAAGAGCAAGCATGATGA 58.241 50.000 0.00 0.00 0.00 2.92
3726 4508 2.307768 CCCAAGAGCAAGCATGATGAT 58.692 47.619 0.00 0.00 0.00 2.45
3727 4509 2.293677 CCCAAGAGCAAGCATGATGATC 59.706 50.000 8.61 8.61 33.51 2.92
3728 4510 2.293677 CCAAGAGCAAGCATGATGATCC 59.706 50.000 11.97 0.00 33.80 3.36
3729 4511 2.949644 CAAGAGCAAGCATGATGATCCA 59.050 45.455 11.97 0.00 33.80 3.41
3730 4512 3.510531 AGAGCAAGCATGATGATCCAT 57.489 42.857 11.97 0.00 33.80 3.41
3731 4513 4.635699 AGAGCAAGCATGATGATCCATA 57.364 40.909 11.97 0.00 33.80 2.74
3732 4514 5.180810 AGAGCAAGCATGATGATCCATAT 57.819 39.130 11.97 0.00 33.80 1.78
3733 4515 5.571285 AGAGCAAGCATGATGATCCATATT 58.429 37.500 11.97 0.00 33.80 1.28
3734 4516 6.718294 AGAGCAAGCATGATGATCCATATTA 58.282 36.000 11.97 0.00 33.80 0.98
3735 4517 7.173032 AGAGCAAGCATGATGATCCATATTAA 58.827 34.615 11.97 0.00 33.80 1.40
3737 4519 6.946583 AGCAAGCATGATGATCCATATTAACT 59.053 34.615 0.00 0.00 0.00 2.24
3742 5519 7.450634 AGCATGATGATCCATATTAACTTGCTT 59.549 33.333 0.00 0.00 35.25 3.91
3743 5520 7.541091 GCATGATGATCCATATTAACTTGCTTG 59.459 37.037 0.00 0.00 0.00 4.01
3745 5522 8.158169 TGATGATCCATATTAACTTGCTTGAC 57.842 34.615 0.00 0.00 0.00 3.18
3769 5546 2.791256 CGGTAATTGTGCAGCGGG 59.209 61.111 0.00 0.00 32.31 6.13
3813 5590 0.960364 TGCTGGGATCGCAGAAAACC 60.960 55.000 36.19 21.35 43.58 3.27
3820 5597 1.705337 ATCGCAGAAAACCGATGGCG 61.705 55.000 0.00 0.00 43.58 5.69
3830 5607 1.065109 CCGATGGCGACGACACATA 59.935 57.895 4.98 0.00 40.82 2.29
3853 5630 2.033151 GTGACGTCAAAAGTGGTGCTAC 60.033 50.000 21.95 0.00 0.00 3.58
3886 5663 1.540267 TCTCGAGTTCCGGAGTGAAAG 59.460 52.381 13.13 1.40 39.14 2.62
3891 5668 1.550976 AGTTCCGGAGTGAAAGCCTAG 59.449 52.381 3.34 0.00 0.00 3.02
3892 5669 1.549170 GTTCCGGAGTGAAAGCCTAGA 59.451 52.381 3.34 0.00 0.00 2.43
3893 5670 2.160721 TCCGGAGTGAAAGCCTAGAT 57.839 50.000 0.00 0.00 0.00 1.98
3894 5671 3.308035 TCCGGAGTGAAAGCCTAGATA 57.692 47.619 0.00 0.00 0.00 1.98
3895 5672 2.957006 TCCGGAGTGAAAGCCTAGATAC 59.043 50.000 0.00 0.00 0.00 2.24
3897 5674 3.385111 CCGGAGTGAAAGCCTAGATACTT 59.615 47.826 0.00 0.00 0.00 2.24
3898 5675 4.363999 CGGAGTGAAAGCCTAGATACTTG 58.636 47.826 0.00 0.00 0.00 3.16
3899 5676 4.098044 CGGAGTGAAAGCCTAGATACTTGA 59.902 45.833 0.00 0.00 0.00 3.02
3900 5677 5.596845 GGAGTGAAAGCCTAGATACTTGAG 58.403 45.833 0.00 0.00 0.00 3.02
3901 5678 5.128008 GGAGTGAAAGCCTAGATACTTGAGT 59.872 44.000 0.00 0.00 0.00 3.41
3903 5680 6.402222 AGTGAAAGCCTAGATACTTGAGTTG 58.598 40.000 0.00 0.00 0.00 3.16
3905 5682 5.248477 TGAAAGCCTAGATACTTGAGTTGGT 59.752 40.000 0.00 0.00 0.00 3.67
3907 5684 6.869206 AAGCCTAGATACTTGAGTTGGTTA 57.131 37.500 0.00 0.00 0.00 2.85
3932 5709 3.757270 ACCGGACAATGGTGATGTTTAA 58.243 40.909 9.46 0.00 38.60 1.52
3975 5752 1.410004 TTGCTCGGATATTCTCGGGT 58.590 50.000 0.00 0.00 0.00 5.28
3980 5757 2.102588 CTCGGATATTCTCGGGTTGGTT 59.897 50.000 0.00 0.00 0.00 3.67
4003 5780 7.607991 GGTTCTTCAGGTGAAAATCTAGATTCA 59.392 37.037 18.19 11.18 33.07 2.57
4021 5798 2.492025 TCAGGCCTTAGATGGTTGGAT 58.508 47.619 0.00 0.00 0.00 3.41
4023 5800 2.441001 CAGGCCTTAGATGGTTGGATCT 59.559 50.000 0.00 0.00 36.61 2.75
4028 5805 3.455910 CCTTAGATGGTTGGATCTGGTGA 59.544 47.826 0.00 0.00 34.42 4.02
4032 5809 1.371467 TGGTTGGATCTGGTGATGGT 58.629 50.000 0.00 0.00 32.19 3.55
4037 5814 0.465097 GGATCTGGTGATGGTGGCTG 60.465 60.000 0.00 0.00 32.19 4.85
4040 5817 1.357137 TCTGGTGATGGTGGCTGTTA 58.643 50.000 0.00 0.00 0.00 2.41
4055 5832 0.887387 TGTTAAGCGCCGCTTCCTTT 60.887 50.000 29.55 6.53 46.77 3.11
4061 5838 0.663153 GCGCCGCTTCCTTTATGAAT 59.337 50.000 0.00 0.00 0.00 2.57
4063 5840 1.939934 CGCCGCTTCCTTTATGAATGA 59.060 47.619 0.00 0.00 0.00 2.57
4074 5851 6.855836 TCCTTTATGAATGAGTTGATGTTGC 58.144 36.000 0.00 0.00 0.00 4.17
4079 5856 6.774354 ATGAATGAGTTGATGTTGCAAAAC 57.226 33.333 0.00 1.62 0.00 2.43
4090 5867 1.492319 TTGCAAAACCTCGTCGTCCG 61.492 55.000 0.00 0.00 38.13 4.79
4095 5872 3.836176 AACCTCGTCGTCCGTGTGC 62.836 63.158 0.00 0.00 37.94 4.57
4112 5889 1.741706 GTGCTGTCATGAGATGGTTGG 59.258 52.381 0.00 0.00 0.00 3.77
4129 5906 3.058016 GGTTGGTGCGGATATGATCATTG 60.058 47.826 14.65 3.22 0.00 2.82
4130 5907 3.490439 TGGTGCGGATATGATCATTGT 57.510 42.857 14.65 3.09 0.00 2.71
4132 5909 3.565063 TGGTGCGGATATGATCATTGTTG 59.435 43.478 14.65 3.58 0.00 3.33
4142 5919 7.013655 GGATATGATCATTGTTGTAGTTTGCCT 59.986 37.037 14.65 0.00 0.00 4.75
4146 5923 5.794687 TCATTGTTGTAGTTTGCCTATCG 57.205 39.130 0.00 0.00 0.00 2.92
4159 5936 1.201181 GCCTATCGCAGATCTGATCGT 59.799 52.381 27.04 13.12 45.12 3.73
4332 6109 7.182749 CCCCTTGTTTCTCATCCATATATAGGA 59.817 40.741 0.00 6.42 39.97 2.94
4378 6156 7.038154 ACAACATAAGCAAAAGCTCAACTAA 57.962 32.000 0.00 0.00 0.00 2.24
4508 6366 5.682212 GCTGAGTTTGTTTTCAGGGTTGATT 60.682 40.000 3.94 0.00 40.85 2.57
4525 6383 8.671028 AGGGTTGATTTCACGTATTGTTTATAC 58.329 33.333 0.00 0.00 36.54 1.47
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 9.516314 GTTCAGTTTGACTAAAGCATTTAAGTT 57.484 29.630 0.00 0.00 40.54 2.66
37 38 8.682710 TGTTCAGTTTGACTAAAGCATTTAAGT 58.317 29.630 0.00 0.00 40.54 2.24
38 39 9.515020 TTGTTCAGTTTGACTAAAGCATTTAAG 57.485 29.630 0.00 0.00 40.54 1.85
39 40 9.862371 TTTGTTCAGTTTGACTAAAGCATTTAA 57.138 25.926 0.00 0.00 40.54 1.52
40 41 9.862371 TTTTGTTCAGTTTGACTAAAGCATTTA 57.138 25.926 0.00 0.00 40.09 1.40
41 42 8.655970 GTTTTGTTCAGTTTGACTAAAGCATTT 58.344 29.630 0.00 0.00 43.42 2.32
42 43 8.034804 AGTTTTGTTCAGTTTGACTAAAGCATT 58.965 29.630 0.00 0.00 0.00 3.56
43 44 7.547227 AGTTTTGTTCAGTTTGACTAAAGCAT 58.453 30.769 0.00 0.00 0.00 3.79
44 45 6.919721 AGTTTTGTTCAGTTTGACTAAAGCA 58.080 32.000 0.00 0.00 0.00 3.91
45 46 7.812309 AAGTTTTGTTCAGTTTGACTAAAGC 57.188 32.000 0.00 0.00 0.00 3.51
46 47 9.405587 TGAAAGTTTTGTTCAGTTTGACTAAAG 57.594 29.630 0.00 0.00 31.45 1.85
47 48 9.751542 TTGAAAGTTTTGTTCAGTTTGACTAAA 57.248 25.926 0.00 0.00 36.41 1.85
48 49 9.751542 TTTGAAAGTTTTGTTCAGTTTGACTAA 57.248 25.926 0.00 0.00 36.41 2.24
49 50 9.921637 ATTTGAAAGTTTTGTTCAGTTTGACTA 57.078 25.926 0.00 0.00 36.41 2.59
50 51 8.831715 ATTTGAAAGTTTTGTTCAGTTTGACT 57.168 26.923 0.00 0.00 36.41 3.41
51 52 9.952341 GTATTTGAAAGTTTTGTTCAGTTTGAC 57.048 29.630 0.00 0.00 36.41 3.18
52 53 9.145865 GGTATTTGAAAGTTTTGTTCAGTTTGA 57.854 29.630 0.00 0.00 36.41 2.69
53 54 8.930760 TGGTATTTGAAAGTTTTGTTCAGTTTG 58.069 29.630 0.00 0.00 36.41 2.93
54 55 9.665719 ATGGTATTTGAAAGTTTTGTTCAGTTT 57.334 25.926 0.00 0.00 36.41 2.66
55 56 9.313118 GATGGTATTTGAAAGTTTTGTTCAGTT 57.687 29.630 0.00 0.00 36.41 3.16
56 57 7.926018 GGATGGTATTTGAAAGTTTTGTTCAGT 59.074 33.333 0.00 0.00 36.41 3.41
57 58 7.925483 TGGATGGTATTTGAAAGTTTTGTTCAG 59.075 33.333 0.00 0.00 36.41 3.02
58 59 7.786030 TGGATGGTATTTGAAAGTTTTGTTCA 58.214 30.769 0.00 0.00 33.21 3.18
59 60 8.655651 TTGGATGGTATTTGAAAGTTTTGTTC 57.344 30.769 0.00 0.00 0.00 3.18
60 61 8.888716 GTTTGGATGGTATTTGAAAGTTTTGTT 58.111 29.630 0.00 0.00 0.00 2.83
61 62 8.264347 AGTTTGGATGGTATTTGAAAGTTTTGT 58.736 29.630 0.00 0.00 0.00 2.83
62 63 8.661352 AGTTTGGATGGTATTTGAAAGTTTTG 57.339 30.769 0.00 0.00 0.00 2.44
63 64 9.679661 AAAGTTTGGATGGTATTTGAAAGTTTT 57.320 25.926 0.00 0.00 0.00 2.43
75 76 9.816787 ACTAGGAAAATTAAAGTTTGGATGGTA 57.183 29.630 0.00 0.00 0.00 3.25
76 77 8.721133 ACTAGGAAAATTAAAGTTTGGATGGT 57.279 30.769 0.00 0.00 0.00 3.55
85 86 8.427276 CGGAGGGTATACTAGGAAAATTAAAGT 58.573 37.037 2.25 0.00 0.00 2.66
86 87 8.645110 TCGGAGGGTATACTAGGAAAATTAAAG 58.355 37.037 2.25 0.00 0.00 1.85
87 88 8.551682 TCGGAGGGTATACTAGGAAAATTAAA 57.448 34.615 2.25 0.00 0.00 1.52
88 89 8.424133 GTTCGGAGGGTATACTAGGAAAATTAA 58.576 37.037 2.25 0.00 0.00 1.40
89 90 7.564660 TGTTCGGAGGGTATACTAGGAAAATTA 59.435 37.037 2.25 0.00 0.00 1.40
90 91 6.384886 TGTTCGGAGGGTATACTAGGAAAATT 59.615 38.462 2.25 0.00 0.00 1.82
91 92 5.901276 TGTTCGGAGGGTATACTAGGAAAAT 59.099 40.000 2.25 0.00 0.00 1.82
92 93 5.271598 TGTTCGGAGGGTATACTAGGAAAA 58.728 41.667 2.25 0.00 0.00 2.29
93 94 4.870636 TGTTCGGAGGGTATACTAGGAAA 58.129 43.478 2.25 0.00 0.00 3.13
94 95 4.524802 TGTTCGGAGGGTATACTAGGAA 57.475 45.455 2.25 0.00 0.00 3.36
95 96 4.736611 ATGTTCGGAGGGTATACTAGGA 57.263 45.455 2.25 0.00 0.00 2.94
96 97 5.813383 TCTATGTTCGGAGGGTATACTAGG 58.187 45.833 2.25 0.00 0.00 3.02
97 98 7.941431 ATTCTATGTTCGGAGGGTATACTAG 57.059 40.000 2.25 0.00 0.00 2.57
98 99 9.812347 TTAATTCTATGTTCGGAGGGTATACTA 57.188 33.333 2.25 0.00 0.00 1.82
99 100 8.716674 TTAATTCTATGTTCGGAGGGTATACT 57.283 34.615 2.25 0.00 0.00 2.12
100 101 9.939802 ATTTAATTCTATGTTCGGAGGGTATAC 57.060 33.333 0.00 0.00 0.00 1.47
103 104 9.151177 ACTATTTAATTCTATGTTCGGAGGGTA 57.849 33.333 0.00 0.00 0.00 3.69
104 105 8.030913 ACTATTTAATTCTATGTTCGGAGGGT 57.969 34.615 0.00 0.00 0.00 4.34
105 106 9.420551 GTACTATTTAATTCTATGTTCGGAGGG 57.579 37.037 0.00 0.00 0.00 4.30
106 107 9.420551 GGTACTATTTAATTCTATGTTCGGAGG 57.579 37.037 0.00 0.00 0.00 4.30
107 108 9.976511 TGGTACTATTTAATTCTATGTTCGGAG 57.023 33.333 0.00 0.00 0.00 4.63
108 109 9.976511 CTGGTACTATTTAATTCTATGTTCGGA 57.023 33.333 0.00 0.00 0.00 4.55
109 110 9.204570 CCTGGTACTATTTAATTCTATGTTCGG 57.795 37.037 0.00 0.00 0.00 4.30
110 111 8.709646 GCCTGGTACTATTTAATTCTATGTTCG 58.290 37.037 0.00 0.00 0.00 3.95
111 112 8.709646 CGCCTGGTACTATTTAATTCTATGTTC 58.290 37.037 0.00 0.00 0.00 3.18
112 113 8.208903 ACGCCTGGTACTATTTAATTCTATGTT 58.791 33.333 0.00 0.00 0.00 2.71
113 114 7.732996 ACGCCTGGTACTATTTAATTCTATGT 58.267 34.615 0.00 0.00 0.00 2.29
114 115 9.355215 CTACGCCTGGTACTATTTAATTCTATG 57.645 37.037 0.00 0.00 0.00 2.23
115 116 8.033626 GCTACGCCTGGTACTATTTAATTCTAT 58.966 37.037 0.00 0.00 0.00 1.98
116 117 7.014518 TGCTACGCCTGGTACTATTTAATTCTA 59.985 37.037 0.00 0.00 0.00 2.10
117 118 6.183360 TGCTACGCCTGGTACTATTTAATTCT 60.183 38.462 0.00 0.00 0.00 2.40
118 119 5.987347 TGCTACGCCTGGTACTATTTAATTC 59.013 40.000 0.00 0.00 0.00 2.17
119 120 5.920903 TGCTACGCCTGGTACTATTTAATT 58.079 37.500 0.00 0.00 0.00 1.40
120 121 5.510861 CCTGCTACGCCTGGTACTATTTAAT 60.511 44.000 0.00 0.00 0.00 1.40
121 122 4.202182 CCTGCTACGCCTGGTACTATTTAA 60.202 45.833 0.00 0.00 0.00 1.52
122 123 3.319972 CCTGCTACGCCTGGTACTATTTA 59.680 47.826 0.00 0.00 0.00 1.40
123 124 2.102588 CCTGCTACGCCTGGTACTATTT 59.897 50.000 0.00 0.00 0.00 1.40
124 125 1.687123 CCTGCTACGCCTGGTACTATT 59.313 52.381 0.00 0.00 0.00 1.73
125 126 1.329256 CCTGCTACGCCTGGTACTAT 58.671 55.000 0.00 0.00 0.00 2.12
126 127 1.389609 GCCTGCTACGCCTGGTACTA 61.390 60.000 0.00 0.00 0.00 1.82
127 128 2.722201 GCCTGCTACGCCTGGTACT 61.722 63.158 0.00 0.00 0.00 2.73
128 129 2.202892 GCCTGCTACGCCTGGTAC 60.203 66.667 0.00 0.00 0.00 3.34
129 130 0.757561 TATGCCTGCTACGCCTGGTA 60.758 55.000 0.00 0.00 0.00 3.25
130 131 1.410850 ATATGCCTGCTACGCCTGGT 61.411 55.000 0.00 0.00 0.00 4.00
131 132 0.671781 GATATGCCTGCTACGCCTGG 60.672 60.000 0.00 0.00 0.00 4.45
132 133 0.033920 TGATATGCCTGCTACGCCTG 59.966 55.000 0.00 0.00 0.00 4.85
133 134 0.034059 GTGATATGCCTGCTACGCCT 59.966 55.000 0.00 0.00 0.00 5.52
134 135 0.249868 TGTGATATGCCTGCTACGCC 60.250 55.000 0.00 0.00 0.00 5.68
135 136 1.143305 CTGTGATATGCCTGCTACGC 58.857 55.000 0.00 0.00 0.00 4.42
136 137 2.223805 TGACTGTGATATGCCTGCTACG 60.224 50.000 0.00 0.00 0.00 3.51
137 138 3.459232 TGACTGTGATATGCCTGCTAC 57.541 47.619 0.00 0.00 0.00 3.58
138 139 3.197549 TGTTGACTGTGATATGCCTGCTA 59.802 43.478 0.00 0.00 0.00 3.49
139 140 2.026915 TGTTGACTGTGATATGCCTGCT 60.027 45.455 0.00 0.00 0.00 4.24
140 141 2.353889 CTGTTGACTGTGATATGCCTGC 59.646 50.000 0.00 0.00 0.00 4.85
141 142 3.865446 TCTGTTGACTGTGATATGCCTG 58.135 45.455 0.00 0.00 0.00 4.85
142 143 4.558226 TTCTGTTGACTGTGATATGCCT 57.442 40.909 0.00 0.00 0.00 4.75
143 144 5.627499 TTTTCTGTTGACTGTGATATGCC 57.373 39.130 0.00 0.00 0.00 4.40
176 177 1.041437 ACCATCTAAGAGCCGGTAGC 58.959 55.000 1.90 0.00 44.25 3.58
177 178 2.557490 GGTACCATCTAAGAGCCGGTAG 59.443 54.545 7.15 0.00 33.00 3.18
178 179 2.091720 TGGTACCATCTAAGAGCCGGTA 60.092 50.000 11.60 0.00 0.00 4.02
179 180 1.342674 TGGTACCATCTAAGAGCCGGT 60.343 52.381 11.60 0.00 0.00 5.28
180 181 1.410004 TGGTACCATCTAAGAGCCGG 58.590 55.000 11.60 0.00 0.00 6.13
181 182 2.628178 TCATGGTACCATCTAAGAGCCG 59.372 50.000 24.99 10.32 33.90 5.52
182 183 4.899352 ATCATGGTACCATCTAAGAGCC 57.101 45.455 24.99 0.00 33.90 4.70
183 184 6.346477 TGTATCATGGTACCATCTAAGAGC 57.654 41.667 24.99 14.84 33.90 4.09
184 185 6.573289 GCCTGTATCATGGTACCATCTAAGAG 60.573 46.154 24.99 17.82 33.90 2.85
185 186 5.246203 GCCTGTATCATGGTACCATCTAAGA 59.754 44.000 24.99 18.46 33.90 2.10
186 187 5.012046 TGCCTGTATCATGGTACCATCTAAG 59.988 44.000 24.99 13.62 33.90 2.18
187 188 4.904853 TGCCTGTATCATGGTACCATCTAA 59.095 41.667 24.99 13.39 33.90 2.10
188 189 4.488770 TGCCTGTATCATGGTACCATCTA 58.511 43.478 24.99 15.94 33.90 1.98
189 190 3.317406 TGCCTGTATCATGGTACCATCT 58.683 45.455 24.99 16.74 33.90 2.90
190 191 3.769739 TGCCTGTATCATGGTACCATC 57.230 47.619 24.99 13.89 33.90 3.51
191 192 3.009473 GGATGCCTGTATCATGGTACCAT 59.991 47.826 22.23 22.23 37.08 3.55
192 193 2.371841 GGATGCCTGTATCATGGTACCA 59.628 50.000 18.99 18.99 0.00 3.25
193 194 2.371841 TGGATGCCTGTATCATGGTACC 59.628 50.000 13.58 4.43 0.00 3.34
194 195 3.557898 CCTGGATGCCTGTATCATGGTAC 60.558 52.174 9.31 9.31 0.00 3.34
195 196 2.639347 CCTGGATGCCTGTATCATGGTA 59.361 50.000 0.00 0.00 0.00 3.25
196 197 1.422781 CCTGGATGCCTGTATCATGGT 59.577 52.381 0.00 0.00 0.00 3.55
197 198 1.701292 TCCTGGATGCCTGTATCATGG 59.299 52.381 0.00 0.00 0.00 3.66
198 199 2.874861 GCTCCTGGATGCCTGTATCATG 60.875 54.545 0.00 0.00 0.00 3.07
199 200 1.350351 GCTCCTGGATGCCTGTATCAT 59.650 52.381 0.00 0.00 0.00 2.45
200 201 0.761187 GCTCCTGGATGCCTGTATCA 59.239 55.000 0.00 0.00 0.00 2.15
201 202 0.036022 GGCTCCTGGATGCCTGTATC 59.964 60.000 22.27 3.28 45.26 2.24
202 203 2.149530 GGCTCCTGGATGCCTGTAT 58.850 57.895 22.27 0.00 45.26 2.29
203 204 3.647367 GGCTCCTGGATGCCTGTA 58.353 61.111 22.27 0.00 45.26 2.74
208 209 2.305343 AGATCTAATGGCTCCTGGATGC 59.695 50.000 0.00 3.15 0.00 3.91
209 210 3.581770 TCAGATCTAATGGCTCCTGGATG 59.418 47.826 0.00 0.00 0.00 3.51
210 211 3.839490 CTCAGATCTAATGGCTCCTGGAT 59.161 47.826 0.00 0.00 0.00 3.41
211 212 3.116977 TCTCAGATCTAATGGCTCCTGGA 60.117 47.826 0.00 0.00 0.00 3.86
212 213 3.237746 TCTCAGATCTAATGGCTCCTGG 58.762 50.000 0.00 0.00 0.00 4.45
213 214 4.081531 GGATCTCAGATCTAATGGCTCCTG 60.082 50.000 14.54 0.00 0.00 3.86
214 215 4.095946 GGATCTCAGATCTAATGGCTCCT 58.904 47.826 14.54 0.00 0.00 3.69
215 216 3.837146 TGGATCTCAGATCTAATGGCTCC 59.163 47.826 14.54 0.00 0.00 4.70
216 217 5.237048 GTTGGATCTCAGATCTAATGGCTC 58.763 45.833 15.87 0.29 0.00 4.70
217 218 4.262377 CGTTGGATCTCAGATCTAATGGCT 60.262 45.833 20.37 0.00 0.00 4.75
218 219 3.993081 CGTTGGATCTCAGATCTAATGGC 59.007 47.826 20.37 7.25 0.00 4.40
219 220 4.564041 CCGTTGGATCTCAGATCTAATGG 58.436 47.826 28.42 28.42 38.64 3.16
220 221 3.993081 GCCGTTGGATCTCAGATCTAATG 59.007 47.826 20.92 20.92 0.00 1.90
221 222 3.643320 TGCCGTTGGATCTCAGATCTAAT 59.357 43.478 15.87 0.00 0.00 1.73
222 223 3.031013 TGCCGTTGGATCTCAGATCTAA 58.969 45.455 14.54 11.93 0.00 2.10
223 224 2.666317 TGCCGTTGGATCTCAGATCTA 58.334 47.619 14.54 5.53 0.00 1.98
224 225 1.489481 TGCCGTTGGATCTCAGATCT 58.511 50.000 14.54 0.00 0.00 2.75
225 226 2.540265 ATGCCGTTGGATCTCAGATC 57.460 50.000 6.05 6.05 0.00 2.75
226 227 3.580022 TCATATGCCGTTGGATCTCAGAT 59.420 43.478 0.00 0.00 0.00 2.90
227 228 2.965147 TCATATGCCGTTGGATCTCAGA 59.035 45.455 0.00 0.00 0.00 3.27
228 229 3.006217 TCTCATATGCCGTTGGATCTCAG 59.994 47.826 0.00 0.00 0.00 3.35
229 230 2.965147 TCTCATATGCCGTTGGATCTCA 59.035 45.455 0.00 0.00 0.00 3.27
230 231 3.667497 TCTCATATGCCGTTGGATCTC 57.333 47.619 0.00 0.00 0.00 2.75
231 232 3.805108 GCTTCTCATATGCCGTTGGATCT 60.805 47.826 0.00 0.00 0.00 2.75
232 233 2.481952 GCTTCTCATATGCCGTTGGATC 59.518 50.000 0.00 0.00 0.00 3.36
233 234 2.105477 AGCTTCTCATATGCCGTTGGAT 59.895 45.455 0.00 0.00 0.00 3.41
234 235 1.486310 AGCTTCTCATATGCCGTTGGA 59.514 47.619 0.00 0.00 0.00 3.53
235 236 1.959042 AGCTTCTCATATGCCGTTGG 58.041 50.000 0.00 0.00 0.00 3.77
236 237 4.512944 ACAATAGCTTCTCATATGCCGTTG 59.487 41.667 0.00 0.00 33.24 4.10
237 238 4.708177 ACAATAGCTTCTCATATGCCGTT 58.292 39.130 0.00 0.00 0.00 4.44
238 239 4.342862 ACAATAGCTTCTCATATGCCGT 57.657 40.909 0.00 0.00 0.00 5.68
239 240 6.255237 CAGATACAATAGCTTCTCATATGCCG 59.745 42.308 0.00 0.00 0.00 5.69
240 241 7.064371 CACAGATACAATAGCTTCTCATATGCC 59.936 40.741 0.00 0.00 0.00 4.40
241 242 7.412781 GCACAGATACAATAGCTTCTCATATGC 60.413 40.741 0.00 0.00 0.00 3.14
242 243 7.201418 CGCACAGATACAATAGCTTCTCATATG 60.201 40.741 0.00 0.00 0.00 1.78
243 244 6.810676 CGCACAGATACAATAGCTTCTCATAT 59.189 38.462 0.00 0.00 0.00 1.78
244 245 6.152379 CGCACAGATACAATAGCTTCTCATA 58.848 40.000 0.00 0.00 0.00 2.15
245 246 4.987285 CGCACAGATACAATAGCTTCTCAT 59.013 41.667 0.00 0.00 0.00 2.90
246 247 4.363138 CGCACAGATACAATAGCTTCTCA 58.637 43.478 0.00 0.00 0.00 3.27
247 248 3.183373 GCGCACAGATACAATAGCTTCTC 59.817 47.826 0.30 0.00 0.00 2.87
248 249 3.126831 GCGCACAGATACAATAGCTTCT 58.873 45.455 0.30 0.00 0.00 2.85
249 250 2.866156 TGCGCACAGATACAATAGCTTC 59.134 45.455 5.66 0.00 0.00 3.86
250 251 2.905075 TGCGCACAGATACAATAGCTT 58.095 42.857 5.66 0.00 0.00 3.74
251 252 2.602257 TGCGCACAGATACAATAGCT 57.398 45.000 5.66 0.00 0.00 3.32
252 253 3.885484 ATTGCGCACAGATACAATAGC 57.115 42.857 11.12 0.00 31.20 2.97
253 254 5.682862 GGAAAATTGCGCACAGATACAATAG 59.317 40.000 11.12 0.00 32.63 1.73
254 255 5.577835 GGAAAATTGCGCACAGATACAATA 58.422 37.500 11.12 0.00 32.63 1.90
255 256 4.423732 GGAAAATTGCGCACAGATACAAT 58.576 39.130 11.12 0.00 34.30 2.71
256 257 3.669290 CGGAAAATTGCGCACAGATACAA 60.669 43.478 11.12 0.00 34.72 2.41
257 258 2.159585 CGGAAAATTGCGCACAGATACA 60.160 45.455 11.12 0.00 34.72 2.29
258 259 2.095213 TCGGAAAATTGCGCACAGATAC 59.905 45.455 11.12 0.00 41.99 2.24
259 260 2.095213 GTCGGAAAATTGCGCACAGATA 59.905 45.455 11.12 0.00 41.99 1.98
260 261 1.135689 GTCGGAAAATTGCGCACAGAT 60.136 47.619 11.12 0.00 41.99 2.90
261 262 0.237235 GTCGGAAAATTGCGCACAGA 59.763 50.000 11.12 0.69 41.99 3.41
262 263 0.238289 AGTCGGAAAATTGCGCACAG 59.762 50.000 11.12 0.00 41.99 3.66
263 264 0.237235 GAGTCGGAAAATTGCGCACA 59.763 50.000 11.12 1.31 41.99 4.57
264 265 0.517316 AGAGTCGGAAAATTGCGCAC 59.483 50.000 11.12 0.00 41.99 5.34
265 266 1.999735 CTAGAGTCGGAAAATTGCGCA 59.000 47.619 5.66 5.66 41.99 6.09
266 267 1.327764 CCTAGAGTCGGAAAATTGCGC 59.672 52.381 0.00 0.00 41.99 6.09
267 268 2.888594 TCCTAGAGTCGGAAAATTGCG 58.111 47.619 0.26 0.26 43.70 4.85
268 269 5.819825 AAATCCTAGAGTCGGAAAATTGC 57.180 39.130 0.00 0.00 33.55 3.56
273 274 9.292195 ACAAAAATAAAATCCTAGAGTCGGAAA 57.708 29.630 0.00 0.00 33.55 3.13
274 275 8.857694 ACAAAAATAAAATCCTAGAGTCGGAA 57.142 30.769 0.00 0.00 33.55 4.30
275 276 9.374838 GTACAAAAATAAAATCCTAGAGTCGGA 57.625 33.333 0.00 0.00 34.52 4.55
276 277 9.158233 TGTACAAAAATAAAATCCTAGAGTCGG 57.842 33.333 0.00 0.00 0.00 4.79
292 293 8.947055 AGAGCTTTTGAACATTGTACAAAAAT 57.053 26.923 13.23 1.08 40.98 1.82
293 294 8.031864 TGAGAGCTTTTGAACATTGTACAAAAA 58.968 29.630 13.23 5.37 40.98 1.94
294 295 7.542890 TGAGAGCTTTTGAACATTGTACAAAA 58.457 30.769 13.23 0.00 39.87 2.44
295 296 7.094508 TGAGAGCTTTTGAACATTGTACAAA 57.905 32.000 13.23 0.00 0.00 2.83
296 297 6.238731 CCTGAGAGCTTTTGAACATTGTACAA 60.239 38.462 11.41 11.41 0.00 2.41
297 298 5.239306 CCTGAGAGCTTTTGAACATTGTACA 59.761 40.000 0.00 0.00 0.00 2.90
298 299 5.335191 CCCTGAGAGCTTTTGAACATTGTAC 60.335 44.000 0.00 0.00 0.00 2.90
299 300 4.761739 CCCTGAGAGCTTTTGAACATTGTA 59.238 41.667 0.00 0.00 0.00 2.41
300 301 3.571401 CCCTGAGAGCTTTTGAACATTGT 59.429 43.478 0.00 0.00 0.00 2.71
301 302 3.822735 TCCCTGAGAGCTTTTGAACATTG 59.177 43.478 0.00 0.00 0.00 2.82
302 303 4.104383 TCCCTGAGAGCTTTTGAACATT 57.896 40.909 0.00 0.00 0.00 2.71
303 304 3.795688 TCCCTGAGAGCTTTTGAACAT 57.204 42.857 0.00 0.00 0.00 2.71
304 305 3.214328 GTTCCCTGAGAGCTTTTGAACA 58.786 45.455 0.00 0.00 32.87 3.18
305 306 2.554462 GGTTCCCTGAGAGCTTTTGAAC 59.446 50.000 0.00 0.00 0.00 3.18
306 307 2.174639 TGGTTCCCTGAGAGCTTTTGAA 59.825 45.455 0.00 0.00 0.00 2.69
307 308 1.774254 TGGTTCCCTGAGAGCTTTTGA 59.226 47.619 0.00 0.00 0.00 2.69
308 309 2.276732 TGGTTCCCTGAGAGCTTTTG 57.723 50.000 0.00 0.00 0.00 2.44
309 310 2.376518 TGATGGTTCCCTGAGAGCTTTT 59.623 45.455 0.00 0.00 0.00 2.27
310 311 1.988107 TGATGGTTCCCTGAGAGCTTT 59.012 47.619 0.00 0.00 0.00 3.51
311 312 1.558756 CTGATGGTTCCCTGAGAGCTT 59.441 52.381 0.00 0.00 0.00 3.74
312 313 1.202330 CTGATGGTTCCCTGAGAGCT 58.798 55.000 0.00 0.00 0.00 4.09
313 314 1.198713 TCTGATGGTTCCCTGAGAGC 58.801 55.000 0.00 0.00 0.00 4.09
314 315 3.069872 CAGATCTGATGGTTCCCTGAGAG 59.930 52.174 18.34 0.00 0.00 3.20
315 316 3.036819 CAGATCTGATGGTTCCCTGAGA 58.963 50.000 18.34 0.00 0.00 3.27
316 317 3.036819 TCAGATCTGATGGTTCCCTGAG 58.963 50.000 21.67 0.00 34.14 3.35
317 318 3.036819 CTCAGATCTGATGGTTCCCTGA 58.963 50.000 25.30 0.00 39.13 3.86
318 319 3.036819 TCTCAGATCTGATGGTTCCCTG 58.963 50.000 25.30 10.73 39.13 4.45
319 320 3.411454 TCTCAGATCTGATGGTTCCCT 57.589 47.619 25.30 0.00 39.13 4.20
320 321 3.007831 GGATCTCAGATCTGATGGTTCCC 59.992 52.174 25.30 15.78 39.13 3.97
321 322 3.645212 TGGATCTCAGATCTGATGGTTCC 59.355 47.826 25.30 24.01 39.13 3.62
322 323 4.952071 TGGATCTCAGATCTGATGGTTC 57.048 45.455 25.30 17.27 39.13 3.62
323 324 4.442612 CGTTGGATCTCAGATCTGATGGTT 60.443 45.833 25.30 10.18 39.13 3.67
324 325 3.069300 CGTTGGATCTCAGATCTGATGGT 59.931 47.826 25.30 15.43 39.13 3.55
325 326 3.554544 CCGTTGGATCTCAGATCTGATGG 60.555 52.174 25.30 14.98 39.13 3.51
326 327 3.651206 CCGTTGGATCTCAGATCTGATG 58.349 50.000 25.30 18.23 39.13 3.07
327 328 2.036992 GCCGTTGGATCTCAGATCTGAT 59.963 50.000 25.30 12.24 39.13 2.90
328 329 1.410517 GCCGTTGGATCTCAGATCTGA 59.589 52.381 23.75 23.75 38.06 3.27
329 330 1.539929 GGCCGTTGGATCTCAGATCTG 60.540 57.143 17.07 17.07 0.00 2.90
330 331 0.755686 GGCCGTTGGATCTCAGATCT 59.244 55.000 14.54 0.00 0.00 2.75
331 332 0.250081 GGGCCGTTGGATCTCAGATC 60.250 60.000 6.05 6.05 0.00 2.75
332 333 0.982852 TGGGCCGTTGGATCTCAGAT 60.983 55.000 0.00 0.00 0.00 2.90
333 334 1.198094 TTGGGCCGTTGGATCTCAGA 61.198 55.000 0.00 0.00 0.00 3.27
334 335 0.745845 CTTGGGCCGTTGGATCTCAG 60.746 60.000 0.00 0.00 0.00 3.35
335 336 1.198094 TCTTGGGCCGTTGGATCTCA 61.198 55.000 0.00 0.00 0.00 3.27
336 337 0.462759 CTCTTGGGCCGTTGGATCTC 60.463 60.000 0.00 0.00 0.00 2.75
337 338 1.604378 CTCTTGGGCCGTTGGATCT 59.396 57.895 0.00 0.00 0.00 2.75
338 339 2.115291 GCTCTTGGGCCGTTGGATC 61.115 63.158 0.00 0.00 0.00 3.36
339 340 2.044946 GCTCTTGGGCCGTTGGAT 60.045 61.111 0.00 0.00 0.00 3.41
340 341 4.344865 GGCTCTTGGGCCGTTGGA 62.345 66.667 0.00 0.00 42.82 3.53
347 348 4.858680 GCTACCGGGCTCTTGGGC 62.859 72.222 6.32 0.00 40.05 5.36
348 349 3.399181 TGCTACCGGGCTCTTGGG 61.399 66.667 6.32 0.00 0.00 4.12
349 350 2.125106 GTGCTACCGGGCTCTTGG 60.125 66.667 6.32 0.00 0.00 3.61
350 351 2.125106 GGTGCTACCGGGCTCTTG 60.125 66.667 6.32 0.00 0.00 3.02
351 352 2.525284 TAGGGTGCTACCGGGCTCTT 62.525 60.000 6.32 0.00 39.83 2.85
352 353 2.313749 ATAGGGTGCTACCGGGCTCT 62.314 60.000 6.32 3.02 39.83 4.09
353 354 1.408453 AATAGGGTGCTACCGGGCTC 61.408 60.000 6.32 0.65 39.83 4.70
354 355 1.384082 AATAGGGTGCTACCGGGCT 60.384 57.895 6.32 0.00 39.83 5.19
355 356 1.227853 CAATAGGGTGCTACCGGGC 60.228 63.158 6.32 0.00 39.83 6.13
356 357 1.450211 CCAATAGGGTGCTACCGGG 59.550 63.158 6.32 0.00 39.83 5.73
357 358 1.227853 GCCAATAGGGTGCTACCGG 60.228 63.158 0.00 0.00 39.83 5.28
358 359 1.227853 GGCCAATAGGGTGCTACCG 60.228 63.158 0.00 0.00 39.83 4.02
359 360 0.179018 CTGGCCAATAGGGTGCTACC 60.179 60.000 7.01 0.00 39.65 3.18
360 361 0.546598 ACTGGCCAATAGGGTGCTAC 59.453 55.000 7.01 0.00 39.65 3.58
361 362 2.047061 CTACTGGCCAATAGGGTGCTA 58.953 52.381 13.59 0.00 39.65 3.49
362 363 0.839946 CTACTGGCCAATAGGGTGCT 59.160 55.000 13.59 0.00 39.65 4.40
363 364 0.819666 GCTACTGGCCAATAGGGTGC 60.820 60.000 22.09 5.40 39.65 5.01
364 365 0.546122 TGCTACTGGCCAATAGGGTG 59.454 55.000 22.09 3.76 40.92 4.61
365 366 0.546598 GTGCTACTGGCCAATAGGGT 59.453 55.000 22.09 11.39 40.92 4.34
366 367 0.179018 GGTGCTACTGGCCAATAGGG 60.179 60.000 22.09 5.32 40.92 3.53
367 368 0.839946 AGGTGCTACTGGCCAATAGG 59.160 55.000 22.09 5.73 40.92 2.57
368 369 2.092968 TCAAGGTGCTACTGGCCAATAG 60.093 50.000 17.00 17.00 40.92 1.73
369 370 1.912731 TCAAGGTGCTACTGGCCAATA 59.087 47.619 7.01 0.00 40.92 1.90
370 371 0.698238 TCAAGGTGCTACTGGCCAAT 59.302 50.000 7.01 0.00 40.92 3.16
371 372 0.698238 ATCAAGGTGCTACTGGCCAA 59.302 50.000 7.01 0.00 40.92 4.52
372 373 1.209504 GTATCAAGGTGCTACTGGCCA 59.790 52.381 4.71 4.71 40.92 5.36
373 374 1.486726 AGTATCAAGGTGCTACTGGCC 59.513 52.381 0.00 0.00 40.92 5.36
374 375 2.990066 AGTATCAAGGTGCTACTGGC 57.010 50.000 0.00 0.00 42.22 4.85
375 376 4.832248 TGAAAGTATCAAGGTGCTACTGG 58.168 43.478 0.00 0.00 30.62 4.00
376 377 6.036517 GTGATGAAAGTATCAAGGTGCTACTG 59.963 42.308 0.00 0.00 42.54 2.74
377 378 6.109359 GTGATGAAAGTATCAAGGTGCTACT 58.891 40.000 0.00 0.00 42.54 2.57
378 379 5.874810 TGTGATGAAAGTATCAAGGTGCTAC 59.125 40.000 0.00 0.00 42.54 3.58
379 380 6.048732 TGTGATGAAAGTATCAAGGTGCTA 57.951 37.500 0.00 0.00 42.54 3.49
380 381 4.910195 TGTGATGAAAGTATCAAGGTGCT 58.090 39.130 0.00 0.00 42.54 4.40
381 382 5.627499 TTGTGATGAAAGTATCAAGGTGC 57.373 39.130 0.00 0.00 42.54 5.01
382 383 7.381766 TCATTGTGATGAAAGTATCAAGGTG 57.618 36.000 0.00 0.00 42.54 4.00
383 384 9.685276 TTATCATTGTGATGAAAGTATCAAGGT 57.315 29.630 2.82 0.00 44.96 3.50
387 388 9.955208 GCATTTATCATTGTGATGAAAGTATCA 57.045 29.630 2.82 0.00 44.96 2.15
388 389 9.110617 CGCATTTATCATTGTGATGAAAGTATC 57.889 33.333 2.82 0.00 44.96 2.24
389 390 7.592533 GCGCATTTATCATTGTGATGAAAGTAT 59.407 33.333 0.30 0.00 44.96 2.12
390 391 6.912051 GCGCATTTATCATTGTGATGAAAGTA 59.088 34.615 0.30 0.00 44.96 2.24
391 392 5.745294 GCGCATTTATCATTGTGATGAAAGT 59.255 36.000 0.30 0.00 44.96 2.66
392 393 5.975344 AGCGCATTTATCATTGTGATGAAAG 59.025 36.000 11.47 0.08 44.96 2.62
393 394 5.744819 CAGCGCATTTATCATTGTGATGAAA 59.255 36.000 11.47 1.45 44.96 2.69
394 395 5.275494 CAGCGCATTTATCATTGTGATGAA 58.725 37.500 11.47 1.62 44.96 2.57
395 396 4.261280 CCAGCGCATTTATCATTGTGATGA 60.261 41.667 11.47 0.00 45.81 2.92
396 397 3.978855 CCAGCGCATTTATCATTGTGATG 59.021 43.478 11.47 0.00 37.70 3.07
397 398 3.633525 ACCAGCGCATTTATCATTGTGAT 59.366 39.130 11.47 0.00 40.72 3.06
398 399 3.016031 ACCAGCGCATTTATCATTGTGA 58.984 40.909 11.47 0.00 0.00 3.58
399 400 3.110358 CACCAGCGCATTTATCATTGTG 58.890 45.455 11.47 0.00 0.00 3.33
400 401 2.480073 GCACCAGCGCATTTATCATTGT 60.480 45.455 11.47 0.00 0.00 2.71
401 402 2.121786 GCACCAGCGCATTTATCATTG 58.878 47.619 11.47 0.00 0.00 2.82
402 403 1.750206 TGCACCAGCGCATTTATCATT 59.250 42.857 11.47 0.00 46.23 2.57
403 404 1.391577 TGCACCAGCGCATTTATCAT 58.608 45.000 11.47 0.00 46.23 2.45
404 405 1.172175 TTGCACCAGCGCATTTATCA 58.828 45.000 11.47 0.00 46.23 2.15
405 406 2.187707 CTTTGCACCAGCGCATTTATC 58.812 47.619 11.47 0.00 46.23 1.75
406 407 1.736696 GCTTTGCACCAGCGCATTTAT 60.737 47.619 11.47 0.00 46.23 1.40
407 408 0.388391 GCTTTGCACCAGCGCATTTA 60.388 50.000 11.47 0.00 46.23 1.40
408 409 1.665599 GCTTTGCACCAGCGCATTT 60.666 52.632 11.47 0.00 46.23 2.32
409 410 2.048877 GCTTTGCACCAGCGCATT 60.049 55.556 11.47 0.00 46.23 3.56
410 411 2.482296 GAAGCTTTGCACCAGCGCAT 62.482 55.000 11.47 2.93 46.23 4.73
411 412 3.198236 GAAGCTTTGCACCAGCGCA 62.198 57.895 11.47 0.00 46.23 6.09
412 413 2.429739 GAAGCTTTGCACCAGCGC 60.430 61.111 0.00 0.00 46.23 5.92
413 414 1.208614 GAGAAGCTTTGCACCAGCG 59.791 57.895 0.00 0.00 46.23 5.18
414 415 1.208614 CGAGAAGCTTTGCACCAGC 59.791 57.895 0.00 8.77 42.57 4.85
415 416 1.208614 GCGAGAAGCTTTGCACCAG 59.791 57.895 0.00 0.00 44.04 4.00
416 417 3.343972 GCGAGAAGCTTTGCACCA 58.656 55.556 0.00 0.00 44.04 4.17
463 464 2.336667 TGCACGCGTATATGATGATGG 58.663 47.619 13.44 0.00 0.00 3.51
464 465 4.150451 TCTTTGCACGCGTATATGATGATG 59.850 41.667 13.44 0.00 0.00 3.07
469 470 4.116238 TCATTCTTTGCACGCGTATATGA 58.884 39.130 13.44 10.26 0.00 2.15
529 530 1.961394 CCATTTATGATGCCTGCTGCT 59.039 47.619 0.00 0.00 42.00 4.24
590 934 2.032860 ATCCTCCATTGCTCGTCCGG 62.033 60.000 0.00 0.00 0.00 5.14
635 985 2.664436 GGGTGTCGTGCTACGCAAC 61.664 63.158 4.15 7.77 41.47 4.17
636 986 2.356553 GGGTGTCGTGCTACGCAA 60.357 61.111 4.15 0.00 41.47 4.85
656 1014 1.202076 GCAGGAGTAATTGTTCAGCGC 60.202 52.381 0.00 0.00 0.00 5.92
675 1033 1.714794 ATCTGTTCTGTGCGTAGTGC 58.285 50.000 0.00 0.00 46.70 4.40
677 1035 2.731341 GCGTATCTGTTCTGTGCGTAGT 60.731 50.000 0.00 0.00 0.00 2.73
682 1040 1.134965 AGGAGCGTATCTGTTCTGTGC 60.135 52.381 0.00 0.00 0.00 4.57
684 1042 1.751924 GGAGGAGCGTATCTGTTCTGT 59.248 52.381 0.00 0.00 0.00 3.41
685 1043 1.067821 GGGAGGAGCGTATCTGTTCTG 59.932 57.143 0.00 0.00 0.00 3.02
686 1044 1.063567 AGGGAGGAGCGTATCTGTTCT 60.064 52.381 0.00 0.00 0.00 3.01
688 1046 1.404843 GAGGGAGGAGCGTATCTGTT 58.595 55.000 0.00 0.00 0.00 3.16
693 1055 1.528776 GACGGAGGGAGGAGCGTAT 60.529 63.158 0.00 0.00 0.00 3.06
741 1109 0.108041 GACGCCGGGTTCCTTAATGA 60.108 55.000 2.18 0.00 0.00 2.57
755 1123 2.202544 CGAGCTCTGACTGACGCC 60.203 66.667 12.85 0.00 0.00 5.68
792 1451 2.590092 GAGTAATGGCGGCTGGGT 59.410 61.111 11.43 0.00 0.00 4.51
796 1455 2.444256 GGAGGGAGTAATGGCGGCT 61.444 63.158 11.43 0.00 0.00 5.52
925 1660 1.086696 GTGCTATTTGAAGCGGCAGA 58.913 50.000 1.45 0.00 45.85 4.26
963 1700 1.079490 AGGTTGGAGATGGAGAGGTGA 59.921 52.381 0.00 0.00 0.00 4.02
979 1716 0.681564 TGGTTTGCAACGGTGAGGTT 60.682 50.000 3.55 0.00 0.00 3.50
1061 1801 0.391597 GGAAGAGGAACACCACGTGA 59.608 55.000 19.30 0.00 36.96 4.35
1165 1908 3.592814 CGCCGCCAGTAGATCCGA 61.593 66.667 0.00 0.00 0.00 4.55
1193 1936 2.052690 CCAGTCGTGGTCGGAGGAT 61.053 63.158 0.00 0.00 39.30 3.24
1216 1959 1.743772 CGGATTTGATGAGGAAGGCGT 60.744 52.381 0.00 0.00 0.00 5.68
1249 1992 1.712081 CGCTTGTCATCTTGCTCCG 59.288 57.895 0.00 0.00 0.00 4.63
1883 2626 1.135915 AGTATGTCGGAGCTGAAGCAG 59.864 52.381 4.90 0.00 45.16 4.24
1898 2641 1.071471 GTCCATCCCGGCCAGTATG 59.929 63.158 2.24 2.09 33.14 2.39
1949 2692 3.273788 AAAGCCGCCAAGGGAGAGG 62.274 63.158 0.00 0.00 41.48 3.69
1958 2701 4.440829 GGGATGGGAAAGCCGCCA 62.441 66.667 0.00 0.00 33.96 5.69
1967 2710 2.043349 TCGAAGAGCGGGATGGGA 60.043 61.111 0.00 0.00 41.33 4.37
2386 3149 1.446099 GAGTTCGCGAGCACCATGA 60.446 57.895 24.99 0.00 0.00 3.07
2771 3534 4.385405 GCTGACCTGACCAGCGCT 62.385 66.667 2.64 2.64 46.03 5.92
2978 3741 0.605860 AGAGGTGCGTCACGTAGTCT 60.606 55.000 0.00 0.00 41.61 3.24
3144 3907 3.374402 CGTCCTCCGGAGCACTGT 61.374 66.667 26.87 0.00 29.39 3.55
3217 3980 0.901580 GACCGTGACCTTCACCCCTA 60.902 60.000 0.76 0.00 44.20 3.53
3414 4178 4.080356 TGCTAAATTGCACCTCTACTCCAT 60.080 41.667 0.00 0.00 38.12 3.41
3473 4239 1.350351 AGAAGAATCAGCCACTGCACT 59.650 47.619 0.00 0.00 41.13 4.40
3541 4307 2.519771 TTCTACCCCGCTCTAGTTCA 57.480 50.000 0.00 0.00 0.00 3.18
3545 4311 0.389757 GGCTTTCTACCCCGCTCTAG 59.610 60.000 0.00 0.00 0.00 2.43
3637 4419 7.225341 TGCACAAGAGATATGCATAGTTTACAG 59.775 37.037 12.79 2.41 44.17 2.74
3651 4433 6.524734 TCTTCTTTCAGTTGCACAAGAGATA 58.475 36.000 0.00 0.00 0.00 1.98
3669 4451 4.393062 CGGTGTTGCATGTATTCTCTTCTT 59.607 41.667 0.00 0.00 0.00 2.52
3687 4469 2.365582 GGCATTTATCTCAACCGGTGT 58.634 47.619 8.52 0.00 0.00 4.16
3688 4470 1.676006 GGGCATTTATCTCAACCGGTG 59.324 52.381 8.52 2.16 0.00 4.94
3689 4471 1.283613 TGGGCATTTATCTCAACCGGT 59.716 47.619 0.00 0.00 0.00 5.28
3690 4472 2.051334 TGGGCATTTATCTCAACCGG 57.949 50.000 0.00 0.00 0.00 5.28
3691 4473 3.278574 TCTTGGGCATTTATCTCAACCG 58.721 45.455 0.00 0.00 0.00 4.44
3694 4476 3.966979 TGCTCTTGGGCATTTATCTCAA 58.033 40.909 0.00 0.00 37.29 3.02
3695 4477 3.650281 TGCTCTTGGGCATTTATCTCA 57.350 42.857 0.00 0.00 37.29 3.27
3697 4479 2.692041 GCTTGCTCTTGGGCATTTATCT 59.308 45.455 0.00 0.00 42.09 1.98
3698 4480 2.428171 TGCTTGCTCTTGGGCATTTATC 59.572 45.455 0.00 0.00 42.09 1.75
3699 4481 2.459644 TGCTTGCTCTTGGGCATTTAT 58.540 42.857 0.00 0.00 42.09 1.40
3700 4482 1.921982 TGCTTGCTCTTGGGCATTTA 58.078 45.000 0.00 0.00 42.09 1.40
3701 4483 1.066430 CATGCTTGCTCTTGGGCATTT 60.066 47.619 0.00 0.00 42.49 2.32
3703 4485 0.323999 TCATGCTTGCTCTTGGGCAT 60.324 50.000 0.00 0.00 44.77 4.40
3706 4488 1.758936 TCATCATGCTTGCTCTTGGG 58.241 50.000 0.00 0.00 0.00 4.12
3707 4489 2.293677 GGATCATCATGCTTGCTCTTGG 59.706 50.000 0.00 0.00 0.00 3.61
3708 4490 2.949644 TGGATCATCATGCTTGCTCTTG 59.050 45.455 0.00 0.00 0.00 3.02
3709 4491 3.292492 TGGATCATCATGCTTGCTCTT 57.708 42.857 0.00 0.00 0.00 2.85
3710 4492 3.510531 ATGGATCATCATGCTTGCTCT 57.489 42.857 0.00 0.00 0.00 4.09
3711 4493 5.899120 AATATGGATCATCATGCTTGCTC 57.101 39.130 0.00 0.00 0.00 4.26
3712 4494 6.946583 AGTTAATATGGATCATCATGCTTGCT 59.053 34.615 0.00 0.00 0.00 3.91
3714 4496 7.541091 GCAAGTTAATATGGATCATCATGCTTG 59.459 37.037 0.00 0.00 0.00 4.01
3715 4497 7.450634 AGCAAGTTAATATGGATCATCATGCTT 59.549 33.333 0.00 0.00 0.00 3.91
3716 4498 6.946583 AGCAAGTTAATATGGATCATCATGCT 59.053 34.615 0.00 0.00 0.00 3.79
3718 4500 8.789762 TCAAGCAAGTTAATATGGATCATCATG 58.210 33.333 0.00 0.00 0.00 3.07
3719 4501 8.790718 GTCAAGCAAGTTAATATGGATCATCAT 58.209 33.333 0.00 0.00 0.00 2.45
3720 4502 7.041848 CGTCAAGCAAGTTAATATGGATCATCA 60.042 37.037 0.00 0.00 0.00 3.07
3722 4504 7.194607 CGTCAAGCAAGTTAATATGGATCAT 57.805 36.000 0.00 0.00 0.00 2.45
3723 4505 6.603237 CGTCAAGCAAGTTAATATGGATCA 57.397 37.500 0.00 0.00 0.00 2.92
3750 5527 2.398554 CCGCTGCACAATTACCGCT 61.399 57.895 0.00 0.00 0.00 5.52
3751 5528 2.100216 CCGCTGCACAATTACCGC 59.900 61.111 0.00 0.00 0.00 5.68
3752 5529 2.791256 CCCGCTGCACAATTACCG 59.209 61.111 0.00 0.00 0.00 4.02
3754 5531 2.100216 CGCCCGCTGCACAATTAC 59.900 61.111 0.00 0.00 41.33 1.89
3777 5554 1.926511 GCAGCTACATGTGGTGTGCC 61.927 60.000 20.71 8.80 42.24 5.01
3782 5559 1.200760 TCCCAGCAGCTACATGTGGT 61.201 55.000 9.11 1.20 0.00 4.16
3785 5562 0.105593 CGATCCCAGCAGCTACATGT 59.894 55.000 2.69 2.69 0.00 3.21
3813 5590 0.846401 CTTATGTGTCGTCGCCATCG 59.154 55.000 0.00 0.00 0.00 3.84
3830 5607 1.400494 GCACCACTTTTGACGTCACTT 59.600 47.619 19.90 0.00 0.00 3.16
3864 5641 1.835494 TCACTCCGGAACTCGAGATT 58.165 50.000 21.68 9.73 42.43 2.40
3865 5642 1.835494 TTCACTCCGGAACTCGAGAT 58.165 50.000 21.68 7.33 42.43 2.75
3873 5650 1.933021 TCTAGGCTTTCACTCCGGAA 58.067 50.000 5.23 0.00 0.00 4.30
3886 5663 9.857957 GTATATAACCAACTCAAGTATCTAGGC 57.142 37.037 0.00 0.00 0.00 3.93
3903 5680 5.217978 TCACCATTGTCCGGTATATAACC 57.782 43.478 0.00 0.00 45.77 2.85
3905 5682 6.428083 ACATCACCATTGTCCGGTATATAA 57.572 37.500 0.00 0.00 34.02 0.98
3907 5684 4.974645 ACATCACCATTGTCCGGTATAT 57.025 40.909 0.00 0.00 34.02 0.86
3913 5690 5.114785 TGTTTAAACATCACCATTGTCCG 57.885 39.130 17.01 0.00 33.17 4.79
3932 5709 9.086336 CAATGTCTTCAACAAGTTAACAATGTT 57.914 29.630 18.62 18.62 42.37 2.71
3975 5752 6.837312 TCTAGATTTTCACCTGAAGAACCAA 58.163 36.000 0.00 0.00 35.21 3.67
3980 5757 7.334090 CCTGAATCTAGATTTTCACCTGAAGA 58.666 38.462 18.88 0.00 35.21 2.87
4003 5780 2.441001 CAGATCCAACCATCTAAGGCCT 59.559 50.000 0.00 0.00 31.47 5.19
4021 5798 1.357137 TAACAGCCACCATCACCAGA 58.643 50.000 0.00 0.00 0.00 3.86
4023 5800 1.886222 GCTTAACAGCCACCATCACCA 60.886 52.381 0.00 0.00 40.61 4.17
4028 5805 3.590824 GCGCTTAACAGCCACCAT 58.409 55.556 0.00 0.00 44.06 3.55
4055 5832 6.867816 GGTTTTGCAACATCAACTCATTCATA 59.132 34.615 0.00 0.00 34.15 2.15
4061 5838 3.243035 CGAGGTTTTGCAACATCAACTCA 60.243 43.478 0.00 0.00 42.72 3.41
4063 5840 2.687935 ACGAGGTTTTGCAACATCAACT 59.312 40.909 0.00 0.00 42.72 3.16
4090 5867 2.105006 ACCATCTCATGACAGCACAC 57.895 50.000 0.00 0.00 0.00 3.82
4095 5872 1.741706 GCACCAACCATCTCATGACAG 59.258 52.381 0.00 0.00 0.00 3.51
4112 5889 4.818534 ACAACAATGATCATATCCGCAC 57.181 40.909 9.04 0.00 0.00 5.34
4164 5941 7.062956 GCGAGGAAAAAGAAAAAGAGAAAAACA 59.937 33.333 0.00 0.00 0.00 2.83
4173 5950 5.212934 GTGTAGGCGAGGAAAAAGAAAAAG 58.787 41.667 0.00 0.00 0.00 2.27
4174 5951 4.641094 TGTGTAGGCGAGGAAAAAGAAAAA 59.359 37.500 0.00 0.00 0.00 1.94
4176 5953 3.811083 TGTGTAGGCGAGGAAAAAGAAA 58.189 40.909 0.00 0.00 0.00 2.52
4177 5954 3.478857 TGTGTAGGCGAGGAAAAAGAA 57.521 42.857 0.00 0.00 0.00 2.52
4178 5955 3.695830 ATGTGTAGGCGAGGAAAAAGA 57.304 42.857 0.00 0.00 0.00 2.52
4179 5956 4.504858 AGTATGTGTAGGCGAGGAAAAAG 58.495 43.478 0.00 0.00 0.00 2.27
4180 5957 4.546829 AGTATGTGTAGGCGAGGAAAAA 57.453 40.909 0.00 0.00 0.00 1.94
4332 6109 6.489603 TGTACAGTGGGATACATTTTCCAAT 58.510 36.000 0.00 0.00 34.77 3.16
4378 6156 4.506758 AGCACTTGTGTTCTTGCAAATTT 58.493 34.783 0.00 0.00 37.44 1.82
4508 6366 8.813282 CATAGCTGTGTATAAACAATACGTGAA 58.187 33.333 1.64 0.00 43.03 3.18
4525 6383 3.313690 TGTTGTACGTGACATAGCTGTG 58.686 45.455 9.17 9.17 38.07 3.66
4596 6459 3.515502 TGGCATGAGCTACACTCTTTAGT 59.484 43.478 0.00 0.00 46.41 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.