Multiple sequence alignment - TraesCS4B01G307300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G307300 chr4B 100.000 5102 0 0 1 5102 596677390 596682491 0.000000e+00 9422.0
1 TraesCS4B01G307300 chr4B 92.000 725 38 13 4393 5102 596767434 596768153 0.000000e+00 1000.0
2 TraesCS4B01G307300 chr4B 85.889 737 71 20 2980 3692 18658686 18657959 0.000000e+00 754.0
3 TraesCS4B01G307300 chr4B 84.658 730 85 15 2980 3689 582341300 582342022 0.000000e+00 702.0
4 TraesCS4B01G307300 chr4B 89.209 278 29 1 2594 2870 582341017 582341294 3.780000e-91 346.0
5 TraesCS4B01G307300 chr4B 85.263 285 21 3 2594 2875 18658953 18658687 1.810000e-69 274.0
6 TraesCS4B01G307300 chr4B 91.837 98 8 0 3593 3690 381357373 381357276 2.480000e-28 137.0
7 TraesCS4B01G307300 chr2B 93.215 3036 149 12 666 3679 799332886 799329886 0.000000e+00 4412.0
8 TraesCS4B01G307300 chr2B 91.713 1436 89 14 3692 5102 522962984 522964414 0.000000e+00 1965.0
9 TraesCS4B01G307300 chr2B 94.975 1015 49 2 3692 4705 548290502 548289489 0.000000e+00 1591.0
10 TraesCS4B01G307300 chr2B 89.781 959 73 15 4162 5102 523034900 523035851 0.000000e+00 1205.0
11 TraesCS4B01G307300 chr2B 90.349 373 31 2 2594 2961 797333633 797333261 7.680000e-133 484.0
12 TraesCS4B01G307300 chr6B 91.807 1428 94 10 3692 5102 374361535 374362956 0.000000e+00 1967.0
13 TraesCS4B01G307300 chr5A 89.481 1426 122 23 3692 5102 312927912 312929324 0.000000e+00 1777.0
14 TraesCS4B01G307300 chr5A 87.465 1428 140 32 3692 5099 428144408 428145816 0.000000e+00 1609.0
15 TraesCS4B01G307300 chr5A 87.545 1397 127 34 3687 5065 89749348 89750715 0.000000e+00 1572.0
16 TraesCS4B01G307300 chr5A 83.523 352 27 10 665 994 666941349 666941007 2.990000e-77 300.0
17 TraesCS4B01G307300 chr5A 83.626 171 21 2 2373 2542 356596429 356596265 2.460000e-33 154.0
18 TraesCS4B01G307300 chr5D 88.835 1433 110 37 3692 5102 426733930 426732526 0.000000e+00 1714.0
19 TraesCS4B01G307300 chr6A 88.260 1431 124 34 3692 5102 155439952 155441358 0.000000e+00 1672.0
20 TraesCS4B01G307300 chr6A 91.245 1108 85 6 2594 3692 554809333 554810437 0.000000e+00 1498.0
21 TraesCS4B01G307300 chr7D 88.120 1431 123 34 3692 5102 458684419 458685822 0.000000e+00 1657.0
22 TraesCS4B01G307300 chr7D 92.818 1100 72 6 2597 3692 161471584 161470488 0.000000e+00 1587.0
23 TraesCS4B01G307300 chr7D 85.927 604 57 8 666 1242 571727828 571728430 2.020000e-173 619.0
24 TraesCS4B01G307300 chr4A 92.747 1103 74 5 2594 3692 395046689 395045589 0.000000e+00 1589.0
25 TraesCS4B01G307300 chr4A 92.287 1102 80 5 2594 3692 625648209 625647110 0.000000e+00 1559.0
26 TraesCS4B01G307300 chr4A 84.431 167 13 8 248 407 680407945 680408105 8.850000e-33 152.0
27 TraesCS4B01G307300 chr4A 88.393 112 11 2 2432 2542 353109928 353109818 3.200000e-27 134.0
28 TraesCS4B01G307300 chr4A 92.405 79 3 2 491 566 680408193 680408271 5.400000e-20 110.0
29 TraesCS4B01G307300 chr4A 93.750 48 3 0 591 638 680413506 680413553 7.090000e-09 73.1
30 TraesCS4B01G307300 chr3A 91.493 1152 80 15 3692 4831 22889227 22888082 0.000000e+00 1568.0
31 TraesCS4B01G307300 chr7A 91.877 1108 78 6 2594 3692 471567176 471568280 0.000000e+00 1537.0
32 TraesCS4B01G307300 chr2A 91.561 1102 88 4 2594 3692 628723493 628722394 0.000000e+00 1515.0
33 TraesCS4B01G307300 chr2A 90.349 373 30 3 2594 2961 763688591 763688962 7.680000e-133 484.0
34 TraesCS4B01G307300 chrUn 86.207 1392 135 40 3735 5102 83500696 83502054 0.000000e+00 1454.0
35 TraesCS4B01G307300 chrUn 83.380 355 25 12 663 992 30429769 30429424 1.070000e-76 298.0
36 TraesCS4B01G307300 chr2D 90.080 373 32 2 2594 2961 638374752 638374380 3.570000e-131 479.0
37 TraesCS4B01G307300 chr2D 86.047 258 18 8 755 994 21572862 21572605 1.410000e-65 261.0
38 TraesCS4B01G307300 chr3B 86.822 129 13 3 3565 3692 667744309 667744184 1.920000e-29 141.0
39 TraesCS4B01G307300 chr4D 82.530 166 18 7 249 412 473850426 473850582 8.910000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G307300 chr4B 596677390 596682491 5101 False 9422 9422 100.0000 1 5102 1 chr4B.!!$F1 5101
1 TraesCS4B01G307300 chr4B 596767434 596768153 719 False 1000 1000 92.0000 4393 5102 1 chr4B.!!$F2 709
2 TraesCS4B01G307300 chr4B 582341017 582342022 1005 False 524 702 86.9335 2594 3689 2 chr4B.!!$F3 1095
3 TraesCS4B01G307300 chr4B 18657959 18658953 994 True 514 754 85.5760 2594 3692 2 chr4B.!!$R2 1098
4 TraesCS4B01G307300 chr2B 799329886 799332886 3000 True 4412 4412 93.2150 666 3679 1 chr2B.!!$R3 3013
5 TraesCS4B01G307300 chr2B 522962984 522964414 1430 False 1965 1965 91.7130 3692 5102 1 chr2B.!!$F1 1410
6 TraesCS4B01G307300 chr2B 548289489 548290502 1013 True 1591 1591 94.9750 3692 4705 1 chr2B.!!$R1 1013
7 TraesCS4B01G307300 chr2B 523034900 523035851 951 False 1205 1205 89.7810 4162 5102 1 chr2B.!!$F2 940
8 TraesCS4B01G307300 chr6B 374361535 374362956 1421 False 1967 1967 91.8070 3692 5102 1 chr6B.!!$F1 1410
9 TraesCS4B01G307300 chr5A 312927912 312929324 1412 False 1777 1777 89.4810 3692 5102 1 chr5A.!!$F2 1410
10 TraesCS4B01G307300 chr5A 428144408 428145816 1408 False 1609 1609 87.4650 3692 5099 1 chr5A.!!$F3 1407
11 TraesCS4B01G307300 chr5A 89749348 89750715 1367 False 1572 1572 87.5450 3687 5065 1 chr5A.!!$F1 1378
12 TraesCS4B01G307300 chr5D 426732526 426733930 1404 True 1714 1714 88.8350 3692 5102 1 chr5D.!!$R1 1410
13 TraesCS4B01G307300 chr6A 155439952 155441358 1406 False 1672 1672 88.2600 3692 5102 1 chr6A.!!$F1 1410
14 TraesCS4B01G307300 chr6A 554809333 554810437 1104 False 1498 1498 91.2450 2594 3692 1 chr6A.!!$F2 1098
15 TraesCS4B01G307300 chr7D 458684419 458685822 1403 False 1657 1657 88.1200 3692 5102 1 chr7D.!!$F1 1410
16 TraesCS4B01G307300 chr7D 161470488 161471584 1096 True 1587 1587 92.8180 2597 3692 1 chr7D.!!$R1 1095
17 TraesCS4B01G307300 chr7D 571727828 571728430 602 False 619 619 85.9270 666 1242 1 chr7D.!!$F2 576
18 TraesCS4B01G307300 chr4A 395045589 395046689 1100 True 1589 1589 92.7470 2594 3692 1 chr4A.!!$R2 1098
19 TraesCS4B01G307300 chr4A 625647110 625648209 1099 True 1559 1559 92.2870 2594 3692 1 chr4A.!!$R3 1098
20 TraesCS4B01G307300 chr3A 22888082 22889227 1145 True 1568 1568 91.4930 3692 4831 1 chr3A.!!$R1 1139
21 TraesCS4B01G307300 chr7A 471567176 471568280 1104 False 1537 1537 91.8770 2594 3692 1 chr7A.!!$F1 1098
22 TraesCS4B01G307300 chr2A 628722394 628723493 1099 True 1515 1515 91.5610 2594 3692 1 chr2A.!!$R1 1098
23 TraesCS4B01G307300 chrUn 83500696 83502054 1358 False 1454 1454 86.2070 3735 5102 1 chrUn.!!$F1 1367

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
94 95 0.101219 TGACATGATCTCGCCTCACG 59.899 55.000 0.0 0.0 45.62 4.35 F
95 96 0.101399 GACATGATCTCGCCTCACGT 59.899 55.000 0.0 0.0 44.19 4.49 F
596 597 0.178861 TGCCTCTTTCCCCCTTCTCT 60.179 55.000 0.0 0.0 0.00 3.10 F
2034 2063 0.541863 AGGTCCGGTGCATTAAGGAG 59.458 55.000 0.0 0.0 32.82 3.69 F
2194 2224 0.992072 CGGTGTTGTAGTGCTCATCG 59.008 55.000 0.0 0.0 0.00 3.84 F
2279 2310 1.609072 GTTCTTCAGTGCTTGGTTCCC 59.391 52.381 0.0 0.0 0.00 3.97 F
2471 2503 1.918262 TGGCATCCTCTTTCAGACCAT 59.082 47.619 0.0 0.0 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1277 1306 0.101399 CGTCCTCCTTCACATCCTCG 59.899 60.000 0.00 0.00 0.00 4.63 R
2083 2112 0.465460 GGTGTGCCCACAAGAACTCA 60.465 55.000 0.70 0.00 43.77 3.41 R
2084 2113 0.465460 TGGTGTGCCCACAAGAACTC 60.465 55.000 0.70 0.00 43.77 3.01 R
2926 2972 0.321034 TCAGAGCATGCCACTGTCAC 60.321 55.000 28.91 9.03 33.93 3.67 R
3086 3133 3.673338 CGATCAAGTAAGTCGAAAGCACA 59.327 43.478 0.00 0.00 37.55 4.57 R
3540 3607 4.748892 TCATCTTTGCGGAAACAAAAACA 58.251 34.783 0.00 0.00 38.96 2.83 R
4338 4412 1.552348 CTTGCCCGAGATTCGATCGC 61.552 60.000 11.09 0.00 43.74 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.509756 CATGCACCTCTCTGACCG 57.490 61.111 0.00 0.00 0.00 4.79
18 19 1.893062 CATGCACCTCTCTGACCGA 59.107 57.895 0.00 0.00 0.00 4.69
19 20 0.459237 CATGCACCTCTCTGACCGAC 60.459 60.000 0.00 0.00 0.00 4.79
20 21 1.608717 ATGCACCTCTCTGACCGACC 61.609 60.000 0.00 0.00 0.00 4.79
21 22 3.007973 GCACCTCTCTGACCGACCC 62.008 68.421 0.00 0.00 0.00 4.46
22 23 1.606601 CACCTCTCTGACCGACCCA 60.607 63.158 0.00 0.00 0.00 4.51
23 24 1.304547 ACCTCTCTGACCGACCCAG 60.305 63.158 0.00 0.00 0.00 4.45
24 25 2.055042 CCTCTCTGACCGACCCAGG 61.055 68.421 0.00 0.00 32.73 4.45
25 26 2.680352 TCTCTGACCGACCCAGGC 60.680 66.667 0.00 0.00 32.73 4.85
26 27 3.775654 CTCTGACCGACCCAGGCC 61.776 72.222 0.00 0.00 32.73 5.19
34 35 3.400054 GACCCAGGCCGGTAGCTT 61.400 66.667 1.90 0.00 43.05 3.74
35 36 2.039951 ACCCAGGCCGGTAGCTTA 59.960 61.111 1.90 0.00 43.05 3.09
36 37 2.029307 GACCCAGGCCGGTAGCTTAG 62.029 65.000 1.90 0.00 43.05 2.18
37 38 2.109181 CCAGGCCGGTAGCTTAGC 59.891 66.667 1.90 0.00 43.05 3.09
38 39 2.109181 CAGGCCGGTAGCTTAGCC 59.891 66.667 1.90 8.88 46.13 3.93
42 43 3.845259 CCGGTAGCTTAGCCGCCA 61.845 66.667 15.67 0.00 45.98 5.69
43 44 2.279517 CGGTAGCTTAGCCGCCAG 60.280 66.667 13.45 4.52 41.53 4.85
44 45 2.589159 GGTAGCTTAGCCGCCAGC 60.589 66.667 0.00 4.28 44.25 4.85
57 58 4.758251 CCAGCGTCCGACATGCCA 62.758 66.667 0.00 0.00 37.82 4.92
58 59 2.512286 CAGCGTCCGACATGCCAT 60.512 61.111 0.00 0.00 37.82 4.40
59 60 1.227234 CAGCGTCCGACATGCCATA 60.227 57.895 0.00 0.00 37.82 2.74
60 61 0.601046 CAGCGTCCGACATGCCATAT 60.601 55.000 0.00 0.00 37.82 1.78
61 62 0.966179 AGCGTCCGACATGCCATATA 59.034 50.000 0.00 0.00 37.82 0.86
62 63 1.067565 AGCGTCCGACATGCCATATAG 60.068 52.381 0.00 0.00 37.82 1.31
63 64 1.336887 GCGTCCGACATGCCATATAGT 60.337 52.381 0.00 0.00 0.00 2.12
64 65 2.328473 CGTCCGACATGCCATATAGTG 58.672 52.381 0.00 0.00 0.00 2.74
65 66 2.069273 GTCCGACATGCCATATAGTGC 58.931 52.381 0.00 0.00 0.00 4.40
66 67 1.070821 CCGACATGCCATATAGTGCG 58.929 55.000 0.00 0.00 0.00 5.34
67 68 1.070821 CGACATGCCATATAGTGCGG 58.929 55.000 0.00 0.00 0.00 5.69
68 69 1.605457 CGACATGCCATATAGTGCGGT 60.605 52.381 0.00 0.00 0.00 5.68
69 70 1.800586 GACATGCCATATAGTGCGGTG 59.199 52.381 0.00 0.00 0.00 4.94
70 71 0.518636 CATGCCATATAGTGCGGTGC 59.481 55.000 0.00 0.00 0.00 5.01
71 72 0.108396 ATGCCATATAGTGCGGTGCA 59.892 50.000 0.00 0.00 35.60 4.57
72 73 0.108396 TGCCATATAGTGCGGTGCAT 59.892 50.000 0.00 0.00 41.91 3.96
73 74 0.798776 GCCATATAGTGCGGTGCATC 59.201 55.000 0.00 0.00 41.91 3.91
74 75 1.609061 GCCATATAGTGCGGTGCATCT 60.609 52.381 0.00 0.00 41.91 2.90
75 76 2.771089 CCATATAGTGCGGTGCATCTT 58.229 47.619 0.00 0.00 41.91 2.40
76 77 2.481568 CCATATAGTGCGGTGCATCTTG 59.518 50.000 0.00 0.00 41.91 3.02
77 78 3.392882 CATATAGTGCGGTGCATCTTGA 58.607 45.455 0.00 0.00 41.91 3.02
78 79 1.656652 ATAGTGCGGTGCATCTTGAC 58.343 50.000 0.00 0.00 41.91 3.18
79 80 0.320050 TAGTGCGGTGCATCTTGACA 59.680 50.000 0.00 0.00 41.91 3.58
80 81 0.321919 AGTGCGGTGCATCTTGACAT 60.322 50.000 0.00 0.00 41.91 3.06
81 82 0.179181 GTGCGGTGCATCTTGACATG 60.179 55.000 0.00 0.00 41.91 3.21
82 83 0.321475 TGCGGTGCATCTTGACATGA 60.321 50.000 0.00 0.00 31.71 3.07
83 84 1.019673 GCGGTGCATCTTGACATGAT 58.980 50.000 0.00 0.00 0.00 2.45
84 85 1.003116 GCGGTGCATCTTGACATGATC 60.003 52.381 0.00 0.00 0.00 2.92
85 86 2.558378 CGGTGCATCTTGACATGATCT 58.442 47.619 0.00 0.00 0.00 2.75
86 87 2.543012 CGGTGCATCTTGACATGATCTC 59.457 50.000 0.00 0.00 0.00 2.75
87 88 2.543012 GGTGCATCTTGACATGATCTCG 59.457 50.000 0.00 0.00 0.00 4.04
88 89 2.033065 GTGCATCTTGACATGATCTCGC 60.033 50.000 0.00 3.67 0.00 5.03
89 90 1.530293 GCATCTTGACATGATCTCGCC 59.470 52.381 0.00 0.00 0.00 5.54
90 91 2.806019 GCATCTTGACATGATCTCGCCT 60.806 50.000 0.00 0.00 0.00 5.52
91 92 2.879002 TCTTGACATGATCTCGCCTC 57.121 50.000 0.00 0.00 0.00 4.70
92 93 2.102578 TCTTGACATGATCTCGCCTCA 58.897 47.619 0.00 0.00 0.00 3.86
93 94 2.159184 TCTTGACATGATCTCGCCTCAC 60.159 50.000 0.00 0.00 0.00 3.51
94 95 0.101219 TGACATGATCTCGCCTCACG 59.899 55.000 0.00 0.00 45.62 4.35
95 96 0.101399 GACATGATCTCGCCTCACGT 59.899 55.000 0.00 0.00 44.19 4.49
96 97 0.179127 ACATGATCTCGCCTCACGTG 60.179 55.000 9.94 9.94 44.19 4.49
97 98 0.179127 CATGATCTCGCCTCACGTGT 60.179 55.000 16.51 0.00 44.19 4.49
98 99 0.179127 ATGATCTCGCCTCACGTGTG 60.179 55.000 16.51 13.39 44.19 3.82
99 100 1.213013 GATCTCGCCTCACGTGTGT 59.787 57.895 16.51 0.00 44.19 3.72
101 102 3.406361 CTCGCCTCACGTGTGTGC 61.406 66.667 16.51 16.34 46.01 4.57
102 103 4.214327 TCGCCTCACGTGTGTGCA 62.214 61.111 16.51 7.14 46.01 4.57
103 104 3.043713 CGCCTCACGTGTGTGCAT 61.044 61.111 16.51 0.00 46.01 3.96
104 105 2.557805 GCCTCACGTGTGTGCATG 59.442 61.111 16.51 0.97 46.01 4.06
105 106 2.557805 CCTCACGTGTGTGCATGC 59.442 61.111 16.51 11.82 46.01 4.06
106 107 2.253051 CCTCACGTGTGTGCATGCA 61.253 57.895 18.46 18.46 46.01 3.96
107 108 1.579964 CCTCACGTGTGTGCATGCAT 61.580 55.000 25.64 2.98 46.01 3.96
108 109 0.453782 CTCACGTGTGTGCATGCATG 60.454 55.000 25.64 22.70 46.01 4.06
142 143 2.561976 GCTAGCATGCGACGTAATTC 57.438 50.000 13.01 0.00 0.00 2.17
143 144 1.858458 GCTAGCATGCGACGTAATTCA 59.142 47.619 13.01 0.00 0.00 2.57
144 145 2.097202 GCTAGCATGCGACGTAATTCAG 60.097 50.000 13.01 0.00 0.00 3.02
145 146 0.652592 AGCATGCGACGTAATTCAGC 59.347 50.000 13.01 0.00 0.00 4.26
146 147 0.373370 GCATGCGACGTAATTCAGCA 59.627 50.000 0.00 0.00 42.28 4.41
148 149 2.220824 GCATGCGACGTAATTCAGCATA 59.779 45.455 0.00 0.00 45.43 3.14
149 150 3.120546 GCATGCGACGTAATTCAGCATAT 60.121 43.478 0.00 0.00 45.43 1.78
150 151 4.091365 GCATGCGACGTAATTCAGCATATA 59.909 41.667 0.00 0.00 45.43 0.86
151 152 5.541910 CATGCGACGTAATTCAGCATATAC 58.458 41.667 0.76 0.00 45.43 1.47
152 153 3.666797 TGCGACGTAATTCAGCATATACG 59.333 43.478 0.00 2.96 44.82 3.06
153 154 3.059044 GCGACGTAATTCAGCATATACGG 59.941 47.826 8.74 0.00 43.89 4.02
154 155 4.469552 CGACGTAATTCAGCATATACGGA 58.530 43.478 8.74 0.00 43.89 4.69
155 156 4.553815 CGACGTAATTCAGCATATACGGAG 59.446 45.833 8.74 0.00 43.89 4.63
156 157 5.449107 ACGTAATTCAGCATATACGGAGT 57.551 39.130 8.74 0.00 43.89 3.85
172 173 4.726416 ACGGAGTACAACGTACTTACATG 58.274 43.478 12.29 0.00 41.94 3.21
173 174 3.545078 CGGAGTACAACGTACTTACATGC 59.455 47.826 8.14 0.00 0.00 4.06
174 175 4.673580 CGGAGTACAACGTACTTACATGCT 60.674 45.833 8.14 0.00 0.00 3.79
175 176 5.166398 GGAGTACAACGTACTTACATGCTT 58.834 41.667 8.14 0.00 0.00 3.91
176 177 6.324819 GGAGTACAACGTACTTACATGCTTA 58.675 40.000 8.14 0.00 0.00 3.09
177 178 6.976925 GGAGTACAACGTACTTACATGCTTAT 59.023 38.462 8.14 0.00 0.00 1.73
178 179 7.490402 GGAGTACAACGTACTTACATGCTTATT 59.510 37.037 8.14 0.00 0.00 1.40
179 180 9.507280 GAGTACAACGTACTTACATGCTTATTA 57.493 33.333 8.14 0.00 0.00 0.98
180 181 9.294030 AGTACAACGTACTTACATGCTTATTAC 57.706 33.333 0.94 0.00 0.00 1.89
181 182 9.294030 GTACAACGTACTTACATGCTTATTACT 57.706 33.333 0.00 0.00 0.00 2.24
183 184 9.512435 ACAACGTACTTACATGCTTATTACTAG 57.488 33.333 0.00 0.00 0.00 2.57
184 185 9.726232 CAACGTACTTACATGCTTATTACTAGA 57.274 33.333 0.00 0.00 0.00 2.43
185 186 9.727627 AACGTACTTACATGCTTATTACTAGAC 57.272 33.333 0.00 0.00 0.00 2.59
186 187 8.066595 ACGTACTTACATGCTTATTACTAGACG 58.933 37.037 0.00 0.00 0.00 4.18
187 188 7.059260 CGTACTTACATGCTTATTACTAGACGC 59.941 40.741 0.00 0.00 0.00 5.19
188 189 6.802608 ACTTACATGCTTATTACTAGACGCA 58.197 36.000 0.00 0.00 0.00 5.24
189 190 6.918569 ACTTACATGCTTATTACTAGACGCAG 59.081 38.462 0.00 0.00 0.00 5.18
212 213 3.857854 CGCCAGCGAGCATGTCAC 61.858 66.667 6.06 0.00 42.83 3.67
213 214 3.503363 GCCAGCGAGCATGTCACC 61.503 66.667 0.00 0.00 0.00 4.02
214 215 2.046988 CCAGCGAGCATGTCACCA 60.047 61.111 0.00 0.00 0.00 4.17
215 216 2.393768 CCAGCGAGCATGTCACCAC 61.394 63.158 0.00 0.00 0.00 4.16
216 217 1.668793 CAGCGAGCATGTCACCACA 60.669 57.895 0.00 0.00 36.78 4.17
217 218 1.669115 AGCGAGCATGTCACCACAC 60.669 57.895 0.00 0.00 34.48 3.82
218 219 1.669115 GCGAGCATGTCACCACACT 60.669 57.895 0.00 0.00 34.48 3.55
219 220 1.230635 GCGAGCATGTCACCACACTT 61.231 55.000 0.00 0.00 34.48 3.16
220 221 1.229428 CGAGCATGTCACCACACTTT 58.771 50.000 0.00 0.00 34.48 2.66
221 222 1.195448 CGAGCATGTCACCACACTTTC 59.805 52.381 0.00 0.00 34.48 2.62
222 223 1.195448 GAGCATGTCACCACACTTTCG 59.805 52.381 0.00 0.00 34.48 3.46
223 224 0.385974 GCATGTCACCACACTTTCGC 60.386 55.000 0.00 0.00 34.48 4.70
224 225 0.943673 CATGTCACCACACTTTCGCA 59.056 50.000 0.00 0.00 34.48 5.10
225 226 1.536766 CATGTCACCACACTTTCGCAT 59.463 47.619 0.00 0.00 34.48 4.73
226 227 0.943673 TGTCACCACACTTTCGCATG 59.056 50.000 0.00 0.00 0.00 4.06
227 228 0.385974 GTCACCACACTTTCGCATGC 60.386 55.000 7.91 7.91 0.00 4.06
228 229 1.440850 CACCACACTTTCGCATGCG 60.441 57.895 33.61 33.61 41.35 4.73
229 230 2.502510 CCACACTTTCGCATGCGC 60.503 61.111 34.45 0.00 39.59 6.09
230 231 2.251963 CACACTTTCGCATGCGCA 59.748 55.556 34.45 23.13 38.40 6.09
231 232 2.076628 CACACTTTCGCATGCGCAC 61.077 57.895 34.45 0.00 38.40 5.34
232 233 2.866510 CACTTTCGCATGCGCACG 60.867 61.111 34.45 24.12 38.40 5.34
233 234 3.041351 ACTTTCGCATGCGCACGA 61.041 55.556 34.45 16.72 38.40 4.35
234 235 2.390599 ACTTTCGCATGCGCACGAT 61.391 52.632 34.45 15.74 38.25 3.73
235 236 1.649348 CTTTCGCATGCGCACGATC 60.649 57.895 34.45 6.91 38.25 3.69
236 237 2.954756 CTTTCGCATGCGCACGATCC 62.955 60.000 34.45 4.49 38.25 3.36
237 238 4.810661 TCGCATGCGCACGATCCA 62.811 61.111 34.45 12.68 38.40 3.41
238 239 3.642981 CGCATGCGCACGATCCAT 61.643 61.111 29.09 0.00 38.40 3.41
239 240 2.250485 GCATGCGCACGATCCATC 59.750 61.111 14.90 0.00 38.36 3.51
240 241 2.249535 GCATGCGCACGATCCATCT 61.250 57.895 14.90 0.00 38.36 2.90
241 242 1.568025 CATGCGCACGATCCATCTG 59.432 57.895 14.90 0.00 0.00 2.90
242 243 0.877213 CATGCGCACGATCCATCTGA 60.877 55.000 14.90 0.00 0.00 3.27
243 244 0.877649 ATGCGCACGATCCATCTGAC 60.878 55.000 14.90 0.00 0.00 3.51
244 245 1.519234 GCGCACGATCCATCTGACA 60.519 57.895 0.30 0.00 0.00 3.58
245 246 1.756375 GCGCACGATCCATCTGACAC 61.756 60.000 0.30 0.00 0.00 3.67
246 247 1.474648 CGCACGATCCATCTGACACG 61.475 60.000 0.00 0.00 33.99 4.49
247 248 1.756375 GCACGATCCATCTGACACGC 61.756 60.000 0.00 0.00 31.96 5.34
248 249 1.226688 ACGATCCATCTGACACGCG 60.227 57.895 3.53 3.53 31.96 6.01
249 250 1.226688 CGATCCATCTGACACGCGT 60.227 57.895 5.58 5.58 0.00 6.01
250 251 1.474648 CGATCCATCTGACACGCGTG 61.475 60.000 35.99 35.99 0.00 5.34
251 252 1.148157 GATCCATCTGACACGCGTGG 61.148 60.000 39.21 23.79 34.19 4.94
252 253 2.578163 ATCCATCTGACACGCGTGGG 62.578 60.000 39.21 29.04 34.19 4.61
253 254 3.490759 CATCTGACACGCGTGGGC 61.491 66.667 39.21 30.21 34.19 5.36
267 268 4.919987 GGGCGCGCGGTACTACTC 62.920 72.222 33.06 9.79 0.00 2.59
268 269 4.183686 GGCGCGCGGTACTACTCA 62.184 66.667 33.06 0.00 0.00 3.41
269 270 2.948134 GCGCGCGGTACTACTCAC 60.948 66.667 33.06 6.44 0.00 3.51
270 271 2.277756 CGCGCGGTACTACTCACC 60.278 66.667 24.84 0.00 0.00 4.02
271 272 2.758089 CGCGCGGTACTACTCACCT 61.758 63.158 24.84 0.00 33.62 4.00
272 273 1.226603 GCGCGGTACTACTCACCTG 60.227 63.158 8.83 0.00 33.62 4.00
273 274 1.432251 CGCGGTACTACTCACCTGG 59.568 63.158 0.00 0.00 33.62 4.45
274 275 1.141234 GCGGTACTACTCACCTGGC 59.859 63.158 0.00 0.00 33.62 4.85
275 276 1.814527 CGGTACTACTCACCTGGCC 59.185 63.158 0.00 0.00 33.62 5.36
276 277 1.673808 CGGTACTACTCACCTGGCCC 61.674 65.000 0.00 0.00 33.62 5.80
277 278 1.335882 GGTACTACTCACCTGGCCCC 61.336 65.000 0.00 0.00 32.98 5.80
278 279 1.002533 TACTACTCACCTGGCCCCC 59.997 63.158 0.00 0.00 0.00 5.40
279 280 2.866523 TACTACTCACCTGGCCCCCG 62.867 65.000 0.00 0.00 0.00 5.73
304 305 4.166011 GCCGCCGACGTACGTACT 62.166 66.667 22.87 10.35 40.78 2.73
305 306 2.808958 GCCGCCGACGTACGTACTA 61.809 63.158 22.87 0.00 40.78 1.82
306 307 1.934463 CCGCCGACGTACGTACTAT 59.066 57.895 22.87 11.25 40.78 2.12
307 308 1.136690 CCGCCGACGTACGTACTATA 58.863 55.000 22.87 0.00 40.78 1.31
308 309 1.136611 CCGCCGACGTACGTACTATAC 60.137 57.143 22.87 6.68 40.78 1.47
325 326 4.779819 CGTACTACGTGGACCAGC 57.220 61.111 5.70 0.00 36.74 4.85
326 327 2.177950 CGTACTACGTGGACCAGCT 58.822 57.895 5.70 0.00 36.74 4.24
327 328 0.524862 CGTACTACGTGGACCAGCTT 59.475 55.000 5.70 0.00 36.74 3.74
328 329 1.467035 CGTACTACGTGGACCAGCTTC 60.467 57.143 5.70 0.00 36.74 3.86
329 330 0.806868 TACTACGTGGACCAGCTTCG 59.193 55.000 5.70 0.00 0.00 3.79
330 331 1.153823 CTACGTGGACCAGCTTCGG 60.154 63.158 0.00 0.00 0.00 4.30
331 332 3.291101 TACGTGGACCAGCTTCGGC 62.291 63.158 0.00 0.00 42.17 5.54
371 372 4.965858 CCTCGCTCGATCGCCGTC 62.966 72.222 21.38 6.74 39.75 4.79
372 373 4.965858 CTCGCTCGATCGCCGTCC 62.966 72.222 21.38 4.65 39.75 4.79
374 375 4.630785 CGCTCGATCGCCGTCCAT 62.631 66.667 11.09 0.00 39.75 3.41
375 376 2.279517 GCTCGATCGCCGTCCATT 60.280 61.111 11.09 0.00 39.75 3.16
376 377 1.883084 GCTCGATCGCCGTCCATTT 60.883 57.895 11.09 0.00 39.75 2.32
377 378 1.822250 GCTCGATCGCCGTCCATTTC 61.822 60.000 11.09 0.00 39.75 2.17
378 379 0.249073 CTCGATCGCCGTCCATTTCT 60.249 55.000 11.09 0.00 39.75 2.52
379 380 0.248907 TCGATCGCCGTCCATTTCTC 60.249 55.000 11.09 0.00 39.75 2.87
380 381 1.540607 CGATCGCCGTCCATTTCTCG 61.541 60.000 0.26 0.00 0.00 4.04
381 382 1.215655 GATCGCCGTCCATTTCTCGG 61.216 60.000 0.00 0.00 45.94 4.63
384 385 4.540153 CCGTCCATTTCTCGGCAT 57.460 55.556 0.00 0.00 37.90 4.40
385 386 2.311294 CCGTCCATTTCTCGGCATC 58.689 57.895 0.00 0.00 37.90 3.91
386 387 0.461870 CCGTCCATTTCTCGGCATCA 60.462 55.000 0.00 0.00 37.90 3.07
387 388 1.586422 CGTCCATTTCTCGGCATCAT 58.414 50.000 0.00 0.00 0.00 2.45
388 389 1.262417 CGTCCATTTCTCGGCATCATG 59.738 52.381 0.00 0.00 0.00 3.07
389 390 1.002033 GTCCATTTCTCGGCATCATGC 60.002 52.381 0.00 0.00 44.08 4.06
405 406 5.571784 ATCATGCATGATGTCTTCGTTTT 57.428 34.783 35.54 12.67 45.27 2.43
406 407 6.682423 ATCATGCATGATGTCTTCGTTTTA 57.318 33.333 35.54 9.22 45.27 1.52
407 408 6.682423 TCATGCATGATGTCTTCGTTTTAT 57.318 33.333 25.42 0.00 33.29 1.40
408 409 7.087409 TCATGCATGATGTCTTCGTTTTATT 57.913 32.000 25.42 0.00 33.29 1.40
409 410 7.537715 TCATGCATGATGTCTTCGTTTTATTT 58.462 30.769 25.42 0.00 33.29 1.40
410 411 8.028354 TCATGCATGATGTCTTCGTTTTATTTT 58.972 29.630 25.42 0.00 33.29 1.82
411 412 9.288124 CATGCATGATGTCTTCGTTTTATTTTA 57.712 29.630 22.59 0.00 0.00 1.52
413 414 9.502145 TGCATGATGTCTTCGTTTTATTTTATC 57.498 29.630 0.00 0.00 0.00 1.75
414 415 9.502145 GCATGATGTCTTCGTTTTATTTTATCA 57.498 29.630 0.00 0.00 0.00 2.15
433 434 9.436957 TTTTATCATTTCTTGACCTCTGAGTAC 57.563 33.333 3.66 0.00 37.11 2.73
434 435 6.611613 ATCATTTCTTGACCTCTGAGTACA 57.388 37.500 3.66 0.73 37.11 2.90
435 436 6.030548 TCATTTCTTGACCTCTGAGTACAG 57.969 41.667 3.66 0.00 44.66 2.74
436 437 6.438741 ATCATTTCTTGACCTCTGAGTACAGA 59.561 38.462 3.66 0.00 42.88 3.41
437 438 7.125507 ATCATTTCTTGACCTCTGAGTACAGAT 59.874 37.037 3.66 0.01 43.49 2.90
447 448 5.055642 TCTGAGTACAGATACACCAAACG 57.944 43.478 0.00 0.00 46.55 3.60
448 449 3.581755 TGAGTACAGATACACCAAACGC 58.418 45.455 0.00 0.00 33.30 4.84
449 450 2.597305 GAGTACAGATACACCAAACGCG 59.403 50.000 3.53 3.53 33.30 6.01
450 451 1.060122 GTACAGATACACCAAACGCGC 59.940 52.381 5.73 0.00 0.00 6.86
451 452 0.601576 ACAGATACACCAAACGCGCA 60.602 50.000 5.73 0.00 0.00 6.09
452 453 0.515127 CAGATACACCAAACGCGCAA 59.485 50.000 5.73 0.00 0.00 4.85
453 454 1.069568 CAGATACACCAAACGCGCAAA 60.070 47.619 5.73 0.00 0.00 3.68
454 455 1.604755 AGATACACCAAACGCGCAAAA 59.395 42.857 5.73 0.00 0.00 2.44
455 456 2.033550 AGATACACCAAACGCGCAAAAA 59.966 40.909 5.73 0.00 0.00 1.94
479 480 6.665992 AAAAGAGAGTATAGACACACCACA 57.334 37.500 0.00 0.00 0.00 4.17
480 481 5.906113 AAGAGAGTATAGACACACCACAG 57.094 43.478 0.00 0.00 0.00 3.66
481 482 4.924625 AGAGAGTATAGACACACCACAGT 58.075 43.478 0.00 0.00 0.00 3.55
482 483 4.944930 AGAGAGTATAGACACACCACAGTC 59.055 45.833 0.00 0.00 35.02 3.51
483 484 4.663334 AGAGTATAGACACACCACAGTCA 58.337 43.478 0.00 0.00 37.23 3.41
484 485 4.459685 AGAGTATAGACACACCACAGTCAC 59.540 45.833 0.00 0.00 37.23 3.67
485 486 4.149598 AGTATAGACACACCACAGTCACA 58.850 43.478 0.00 0.00 37.23 3.58
486 487 4.772624 AGTATAGACACACCACAGTCACAT 59.227 41.667 0.00 0.00 37.23 3.21
487 488 5.949952 AGTATAGACACACCACAGTCACATA 59.050 40.000 0.00 0.00 37.23 2.29
488 489 5.738619 ATAGACACACCACAGTCACATAA 57.261 39.130 0.00 0.00 37.23 1.90
489 490 3.995199 AGACACACCACAGTCACATAAG 58.005 45.455 0.00 0.00 37.23 1.73
490 491 3.641436 AGACACACCACAGTCACATAAGA 59.359 43.478 0.00 0.00 37.23 2.10
491 492 3.728845 ACACACCACAGTCACATAAGAC 58.271 45.455 0.00 0.00 38.81 3.01
492 493 3.133901 ACACACCACAGTCACATAAGACA 59.866 43.478 0.00 0.00 40.98 3.41
493 494 4.202357 ACACACCACAGTCACATAAGACAT 60.202 41.667 0.00 0.00 40.98 3.06
494 495 5.011635 ACACACCACAGTCACATAAGACATA 59.988 40.000 0.00 0.00 40.98 2.29
495 496 5.931724 CACACCACAGTCACATAAGACATAA 59.068 40.000 0.00 0.00 40.98 1.90
496 497 5.932303 ACACCACAGTCACATAAGACATAAC 59.068 40.000 0.00 0.00 40.98 1.89
497 498 5.931724 CACCACAGTCACATAAGACATAACA 59.068 40.000 0.00 0.00 40.98 2.41
498 499 5.932303 ACCACAGTCACATAAGACATAACAC 59.068 40.000 0.00 0.00 40.98 3.32
499 500 6.166279 CCACAGTCACATAAGACATAACACT 58.834 40.000 0.00 0.00 40.98 3.55
500 501 7.039293 ACCACAGTCACATAAGACATAACACTA 60.039 37.037 0.00 0.00 40.98 2.74
501 502 7.275779 CCACAGTCACATAAGACATAACACTAC 59.724 40.741 0.00 0.00 40.98 2.73
502 503 7.812669 CACAGTCACATAAGACATAACACTACA 59.187 37.037 0.00 0.00 40.98 2.74
503 504 8.531982 ACAGTCACATAAGACATAACACTACAT 58.468 33.333 0.00 0.00 40.98 2.29
504 505 9.371136 CAGTCACATAAGACATAACACTACATT 57.629 33.333 0.00 0.00 40.98 2.71
505 506 9.944376 AGTCACATAAGACATAACACTACATTT 57.056 29.630 0.00 0.00 40.98 2.32
535 536 8.757164 AAAAACAATTCCACGAGAAAATATCC 57.243 30.769 0.00 0.00 38.21 2.59
536 537 6.451064 AACAATTCCACGAGAAAATATCCC 57.549 37.500 0.00 0.00 38.21 3.85
537 538 4.574828 ACAATTCCACGAGAAAATATCCCG 59.425 41.667 0.00 0.00 38.21 5.14
538 539 2.234300 TCCACGAGAAAATATCCCGC 57.766 50.000 0.00 0.00 0.00 6.13
539 540 1.760613 TCCACGAGAAAATATCCCGCT 59.239 47.619 0.00 0.00 0.00 5.52
540 541 2.135933 CCACGAGAAAATATCCCGCTC 58.864 52.381 0.00 0.00 0.00 5.03
541 542 2.224066 CCACGAGAAAATATCCCGCTCT 60.224 50.000 0.00 0.00 0.00 4.09
542 543 3.053455 CACGAGAAAATATCCCGCTCTC 58.947 50.000 0.00 0.00 0.00 3.20
543 544 2.036089 ACGAGAAAATATCCCGCTCTCC 59.964 50.000 0.00 0.00 30.81 3.71
544 545 2.297597 CGAGAAAATATCCCGCTCTCCT 59.702 50.000 0.00 0.00 30.81 3.69
545 546 3.612955 CGAGAAAATATCCCGCTCTCCTC 60.613 52.174 0.00 0.00 30.81 3.71
546 547 2.635427 AGAAAATATCCCGCTCTCCTCC 59.365 50.000 0.00 0.00 0.00 4.30
547 548 0.969894 AAATATCCCGCTCTCCTCCG 59.030 55.000 0.00 0.00 0.00 4.63
548 549 0.900647 AATATCCCGCTCTCCTCCGG 60.901 60.000 0.00 0.00 43.97 5.14
560 561 4.803426 CTCCGGCTCCGCACAGAC 62.803 72.222 0.00 0.00 38.24 3.51
571 572 3.314331 CACAGACGGCACCCCTCT 61.314 66.667 0.00 0.00 0.00 3.69
572 573 2.526873 ACAGACGGCACCCCTCTT 60.527 61.111 0.00 0.00 0.00 2.85
573 574 2.266055 CAGACGGCACCCCTCTTC 59.734 66.667 0.00 0.00 0.00 2.87
574 575 2.203788 AGACGGCACCCCTCTTCA 60.204 61.111 0.00 0.00 0.00 3.02
575 576 2.047179 GACGGCACCCCTCTTCAC 60.047 66.667 0.00 0.00 0.00 3.18
576 577 3.607370 GACGGCACCCCTCTTCACC 62.607 68.421 0.00 0.00 0.00 4.02
577 578 3.322466 CGGCACCCCTCTTCACCT 61.322 66.667 0.00 0.00 0.00 4.00
578 579 2.352805 GGCACCCCTCTTCACCTG 59.647 66.667 0.00 0.00 0.00 4.00
579 580 2.360475 GCACCCCTCTTCACCTGC 60.360 66.667 0.00 0.00 0.00 4.85
580 581 2.352805 CACCCCTCTTCACCTGCC 59.647 66.667 0.00 0.00 0.00 4.85
581 582 2.208349 ACCCCTCTTCACCTGCCT 59.792 61.111 0.00 0.00 0.00 4.75
582 583 1.920835 ACCCCTCTTCACCTGCCTC 60.921 63.158 0.00 0.00 0.00 4.70
583 584 1.614824 CCCCTCTTCACCTGCCTCT 60.615 63.158 0.00 0.00 0.00 3.69
584 585 1.204113 CCCCTCTTCACCTGCCTCTT 61.204 60.000 0.00 0.00 0.00 2.85
585 586 0.695347 CCCTCTTCACCTGCCTCTTT 59.305 55.000 0.00 0.00 0.00 2.52
586 587 1.339535 CCCTCTTCACCTGCCTCTTTC 60.340 57.143 0.00 0.00 0.00 2.62
587 588 1.339535 CCTCTTCACCTGCCTCTTTCC 60.340 57.143 0.00 0.00 0.00 3.13
588 589 0.693049 TCTTCACCTGCCTCTTTCCC 59.307 55.000 0.00 0.00 0.00 3.97
589 590 0.322906 CTTCACCTGCCTCTTTCCCC 60.323 60.000 0.00 0.00 0.00 4.81
590 591 1.789576 TTCACCTGCCTCTTTCCCCC 61.790 60.000 0.00 0.00 0.00 5.40
591 592 2.211279 ACCTGCCTCTTTCCCCCT 59.789 61.111 0.00 0.00 0.00 4.79
592 593 1.466186 ACCTGCCTCTTTCCCCCTT 60.466 57.895 0.00 0.00 0.00 3.95
593 594 1.304617 CCTGCCTCTTTCCCCCTTC 59.695 63.158 0.00 0.00 0.00 3.46
594 595 1.210885 CCTGCCTCTTTCCCCCTTCT 61.211 60.000 0.00 0.00 0.00 2.85
595 596 0.254462 CTGCCTCTTTCCCCCTTCTC 59.746 60.000 0.00 0.00 0.00 2.87
596 597 0.178861 TGCCTCTTTCCCCCTTCTCT 60.179 55.000 0.00 0.00 0.00 3.10
597 598 0.544223 GCCTCTTTCCCCCTTCTCTC 59.456 60.000 0.00 0.00 0.00 3.20
598 599 1.208706 CCTCTTTCCCCCTTCTCTCC 58.791 60.000 0.00 0.00 0.00 3.71
599 600 1.208706 CTCTTTCCCCCTTCTCTCCC 58.791 60.000 0.00 0.00 0.00 4.30
600 601 0.617820 TCTTTCCCCCTTCTCTCCCG 60.618 60.000 0.00 0.00 0.00 5.14
601 602 0.910088 CTTTCCCCCTTCTCTCCCGT 60.910 60.000 0.00 0.00 0.00 5.28
602 603 1.198759 TTTCCCCCTTCTCTCCCGTG 61.199 60.000 0.00 0.00 0.00 4.94
603 604 2.038975 CCCCCTTCTCTCCCGTGA 59.961 66.667 0.00 0.00 0.00 4.35
604 605 2.359967 CCCCCTTCTCTCCCGTGAC 61.360 68.421 0.00 0.00 0.00 3.67
605 606 2.359967 CCCCTTCTCTCCCGTGACC 61.360 68.421 0.00 0.00 0.00 4.02
606 607 2.711922 CCCTTCTCTCCCGTGACCG 61.712 68.421 0.00 0.00 0.00 4.79
607 608 1.977544 CCTTCTCTCCCGTGACCGT 60.978 63.158 0.00 0.00 0.00 4.83
608 609 1.213013 CTTCTCTCCCGTGACCGTG 59.787 63.158 0.00 0.00 0.00 4.94
609 610 2.214181 CTTCTCTCCCGTGACCGTGG 62.214 65.000 0.00 0.00 0.00 4.94
616 617 4.742201 CGTGACCGTGGGCTCCTG 62.742 72.222 0.00 0.00 0.00 3.86
619 620 4.021925 GACCGTGGGCTCCTGCTT 62.022 66.667 0.00 0.00 39.59 3.91
620 621 3.959991 GACCGTGGGCTCCTGCTTC 62.960 68.421 0.00 0.00 39.59 3.86
621 622 4.785453 CCGTGGGCTCCTGCTTCC 62.785 72.222 0.00 0.00 39.59 3.46
622 623 4.020617 CGTGGGCTCCTGCTTCCA 62.021 66.667 0.00 0.00 39.59 3.53
623 624 2.679716 GTGGGCTCCTGCTTCCAT 59.320 61.111 0.00 0.00 39.59 3.41
624 625 1.452833 GTGGGCTCCTGCTTCCATC 60.453 63.158 0.00 0.00 39.59 3.51
625 626 1.924939 TGGGCTCCTGCTTCCATCA 60.925 57.895 0.00 0.00 39.59 3.07
626 627 1.284111 TGGGCTCCTGCTTCCATCAT 61.284 55.000 0.00 0.00 39.59 2.45
627 628 0.822532 GGGCTCCTGCTTCCATCATG 60.823 60.000 0.00 0.00 39.59 3.07
628 629 1.453762 GGCTCCTGCTTCCATCATGC 61.454 60.000 0.00 0.00 39.59 4.06
629 630 0.750546 GCTCCTGCTTCCATCATGCA 60.751 55.000 0.00 0.00 36.03 3.96
632 633 2.795165 CTGCTTCCATCATGCAGCT 58.205 52.632 8.20 0.00 44.03 4.24
633 634 1.963172 CTGCTTCCATCATGCAGCTA 58.037 50.000 8.20 0.00 44.03 3.32
634 635 1.874231 CTGCTTCCATCATGCAGCTAG 59.126 52.381 8.20 0.00 44.03 3.42
635 636 0.592148 GCTTCCATCATGCAGCTAGC 59.408 55.000 6.62 6.62 45.96 3.42
645 646 2.767536 GCAGCTAGCATCCGAAACA 58.232 52.632 18.83 0.00 44.79 2.83
646 647 1.086696 GCAGCTAGCATCCGAAACAA 58.913 50.000 18.83 0.00 44.79 2.83
647 648 1.672881 GCAGCTAGCATCCGAAACAAT 59.327 47.619 18.83 0.00 44.79 2.71
648 649 2.872245 GCAGCTAGCATCCGAAACAATA 59.128 45.455 18.83 0.00 44.79 1.90
649 650 3.312421 GCAGCTAGCATCCGAAACAATAA 59.688 43.478 18.83 0.00 44.79 1.40
650 651 4.553547 GCAGCTAGCATCCGAAACAATAAG 60.554 45.833 18.83 0.00 44.79 1.73
651 652 4.024556 CAGCTAGCATCCGAAACAATAAGG 60.025 45.833 18.83 0.00 0.00 2.69
652 653 3.877508 GCTAGCATCCGAAACAATAAGGT 59.122 43.478 10.63 0.00 0.00 3.50
653 654 5.054477 GCTAGCATCCGAAACAATAAGGTA 58.946 41.667 10.63 0.00 0.00 3.08
654 655 5.050295 GCTAGCATCCGAAACAATAAGGTAC 60.050 44.000 10.63 0.00 0.00 3.34
655 656 4.839121 AGCATCCGAAACAATAAGGTACA 58.161 39.130 0.00 0.00 0.00 2.90
656 657 4.634443 AGCATCCGAAACAATAAGGTACAC 59.366 41.667 0.00 0.00 0.00 2.90
657 658 4.393680 GCATCCGAAACAATAAGGTACACA 59.606 41.667 0.00 0.00 0.00 3.72
658 659 5.672819 GCATCCGAAACAATAAGGTACACAC 60.673 44.000 0.00 0.00 0.00 3.82
659 660 4.958509 TCCGAAACAATAAGGTACACACA 58.041 39.130 0.00 0.00 0.00 3.72
660 661 5.366460 TCCGAAACAATAAGGTACACACAA 58.634 37.500 0.00 0.00 0.00 3.33
661 662 5.821470 TCCGAAACAATAAGGTACACACAAA 59.179 36.000 0.00 0.00 0.00 2.83
662 663 5.910723 CCGAAACAATAAGGTACACACAAAC 59.089 40.000 0.00 0.00 0.00 2.93
663 664 5.617992 CGAAACAATAAGGTACACACAAACG 59.382 40.000 0.00 0.00 0.00 3.60
664 665 4.477302 ACAATAAGGTACACACAAACGC 57.523 40.909 0.00 0.00 0.00 4.84
675 676 2.506217 CAAACGCTCGCTCGCCTA 60.506 61.111 0.00 0.00 0.00 3.93
684 685 2.511600 GCTCGCCTATGCCACGTT 60.512 61.111 0.00 0.00 0.00 3.99
692 695 2.538939 GCCTATGCCACGTTCGAATTTC 60.539 50.000 0.00 0.00 0.00 2.17
750 756 2.490115 AGGTTTCACGCTTGACAAAACA 59.510 40.909 8.09 0.00 0.00 2.83
765 771 5.301551 TGACAAAACATAGGCAGTCAACAAT 59.698 36.000 0.00 0.00 33.55 2.71
808 814 0.972983 CTCCCCTTCTCCTTCGCAGA 60.973 60.000 0.00 0.00 0.00 4.26
911 936 2.268920 GCGATGCCACCTCCTTCA 59.731 61.111 0.00 0.00 0.00 3.02
1023 1052 4.625083 GCAAGTTCTCCTTCTCCAGCTATT 60.625 45.833 0.00 0.00 0.00 1.73
1032 1061 4.382040 CCTTCTCCAGCTATTTTCTCGTCA 60.382 45.833 0.00 0.00 0.00 4.35
1039 1068 3.056749 AGCTATTTTCTCGTCACCGTTCT 60.057 43.478 0.00 0.00 35.01 3.01
1057 1086 1.007600 TCTTCTCTCCATCCCTGCTCA 59.992 52.381 0.00 0.00 0.00 4.26
1074 1103 0.719015 TCATCCCCTCCTCCTTGACT 59.281 55.000 0.00 0.00 0.00 3.41
1214 1243 1.227438 CCGTTGGAGTCACCGTTGT 60.227 57.895 0.00 0.00 42.61 3.32
1331 1360 1.302192 GTGAAGGGTGCGGCTGTTA 60.302 57.895 0.00 0.00 0.00 2.41
1393 1422 5.022282 TGACGCCATGAAGAAGATCAATA 57.978 39.130 0.00 0.00 32.06 1.90
1404 1433 8.954950 TGAAGAAGATCAATATTGAGAAGGAC 57.045 34.615 21.97 11.53 41.08 3.85
1408 1437 5.862845 AGATCAATATTGAGAAGGACGCAT 58.137 37.500 21.97 2.72 41.08 4.73
1477 1506 1.100463 TTGTGCGTGCATTGGTCAGT 61.100 50.000 0.00 0.00 0.00 3.41
1482 1511 1.730547 GTGCATTGGTCAGTTGCGC 60.731 57.895 0.00 0.00 39.23 6.09
1483 1512 1.898094 TGCATTGGTCAGTTGCGCT 60.898 52.632 9.73 0.00 39.23 5.92
1501 1530 1.404181 GCTCATCAGGTACAACTCGCA 60.404 52.381 0.00 0.00 0.00 5.10
1517 1546 1.819288 TCGCATCTCGTCTTTCCTCTT 59.181 47.619 0.00 0.00 39.67 2.85
1566 1595 8.673456 AAATTGTTGGGGTTGTAGGTAATATT 57.327 30.769 0.00 0.00 0.00 1.28
1639 1668 4.724399 TGTGTATGGTGTTCACCTTGAAT 58.276 39.130 20.48 9.82 38.79 2.57
1675 1704 4.547406 TGTAGGTTCATCTCGTGTATCG 57.453 45.455 0.00 0.00 41.41 2.92
1696 1725 3.367498 CGGGAAGACAACAGTAAGGAGAG 60.367 52.174 0.00 0.00 0.00 3.20
1712 1741 4.843728 AGGAGAGGAGAGCTATTATCTCG 58.156 47.826 14.11 0.00 43.45 4.04
1750 1779 8.826765 TCAGGAAGAAAAGGTAAGATGTCTAAT 58.173 33.333 0.00 0.00 0.00 1.73
1762 1791 7.812191 GGTAAGATGTCTAATAGAGCACATCTG 59.188 40.741 18.06 0.00 44.07 2.90
1784 1813 5.883661 TGCACTTTTTCTGCTATCTTATGC 58.116 37.500 0.00 0.00 35.53 3.14
1837 1866 9.462606 AGAGGTTAAAGAATAATTAGGTGGTTG 57.537 33.333 0.00 0.00 0.00 3.77
1859 1888 7.384115 GGTTGGAATGATCTTCATATTGCAATG 59.616 37.037 22.27 8.00 41.72 2.82
1998 2027 5.470777 TCGTAATGGGTTTGTCCTAAAACTG 59.529 40.000 0.40 0.00 39.51 3.16
2002 2031 4.027437 TGGGTTTGTCCTAAAACTGCTTT 58.973 39.130 0.40 0.00 39.51 3.51
2034 2063 0.541863 AGGTCCGGTGCATTAAGGAG 59.458 55.000 0.00 0.00 32.82 3.69
2072 2101 3.260884 TGGTGTCCTGTTAGATGAGTTCC 59.739 47.826 0.00 0.00 0.00 3.62
2075 2104 3.515502 TGTCCTGTTAGATGAGTTCCTGG 59.484 47.826 0.00 0.00 0.00 4.45
2076 2105 3.515901 GTCCTGTTAGATGAGTTCCTGGT 59.484 47.826 0.00 0.00 0.00 4.00
2077 2106 3.515502 TCCTGTTAGATGAGTTCCTGGTG 59.484 47.826 0.00 0.00 0.00 4.17
2078 2107 3.265791 CTGTTAGATGAGTTCCTGGTGC 58.734 50.000 0.00 0.00 0.00 5.01
2079 2108 2.637382 TGTTAGATGAGTTCCTGGTGCA 59.363 45.455 0.00 0.00 0.00 4.57
2080 2109 3.264193 TGTTAGATGAGTTCCTGGTGCAT 59.736 43.478 0.00 0.00 0.00 3.96
2081 2110 2.414994 AGATGAGTTCCTGGTGCATG 57.585 50.000 0.00 0.00 0.00 4.06
2082 2111 1.911357 AGATGAGTTCCTGGTGCATGA 59.089 47.619 0.00 0.00 0.00 3.07
2083 2112 2.508716 AGATGAGTTCCTGGTGCATGAT 59.491 45.455 0.00 0.00 0.00 2.45
2084 2113 2.118313 TGAGTTCCTGGTGCATGATG 57.882 50.000 0.00 0.00 0.00 3.07
2085 2114 1.629861 TGAGTTCCTGGTGCATGATGA 59.370 47.619 0.00 0.00 0.00 2.92
2086 2115 2.286872 GAGTTCCTGGTGCATGATGAG 58.713 52.381 0.00 0.00 0.00 2.90
2087 2116 1.632409 AGTTCCTGGTGCATGATGAGT 59.368 47.619 0.00 0.00 0.00 3.41
2088 2117 2.040813 AGTTCCTGGTGCATGATGAGTT 59.959 45.455 0.00 0.00 0.00 3.01
2089 2118 2.408271 TCCTGGTGCATGATGAGTTC 57.592 50.000 0.00 0.00 0.00 3.01
2090 2119 1.911357 TCCTGGTGCATGATGAGTTCT 59.089 47.619 0.00 0.00 0.00 3.01
2091 2120 2.306805 TCCTGGTGCATGATGAGTTCTT 59.693 45.455 0.00 0.00 0.00 2.52
2092 2121 2.422479 CCTGGTGCATGATGAGTTCTTG 59.578 50.000 0.00 0.00 33.67 3.02
2093 2122 3.079578 CTGGTGCATGATGAGTTCTTGT 58.920 45.455 0.00 0.00 33.21 3.16
2139 2168 7.151999 TGTCAATGTTCTAAAATAATGCCGT 57.848 32.000 0.00 0.00 0.00 5.68
2171 2201 6.541934 AGAAGATGACATGTCTCATCAGAA 57.458 37.500 25.55 4.07 46.32 3.02
2194 2224 0.992072 CGGTGTTGTAGTGCTCATCG 59.008 55.000 0.00 0.00 0.00 3.84
2226 2256 8.359642 TCAAGAAAGGACAAACATAAATTCCTG 58.640 33.333 0.00 0.00 36.78 3.86
2227 2257 8.359642 CAAGAAAGGACAAACATAAATTCCTGA 58.640 33.333 0.00 0.00 36.78 3.86
2228 2258 8.477419 AGAAAGGACAAACATAAATTCCTGAA 57.523 30.769 0.00 0.00 36.78 3.02
2229 2259 8.579863 AGAAAGGACAAACATAAATTCCTGAAG 58.420 33.333 0.00 0.00 36.78 3.02
2230 2260 7.839680 AAGGACAAACATAAATTCCTGAAGT 57.160 32.000 0.00 0.00 36.78 3.01
2279 2310 1.609072 GTTCTTCAGTGCTTGGTTCCC 59.391 52.381 0.00 0.00 0.00 3.97
2281 2312 2.334977 TCTTCAGTGCTTGGTTCCCTA 58.665 47.619 0.00 0.00 0.00 3.53
2334 2365 3.950395 CCCAAAATCTCCAGGAGAATCAC 59.050 47.826 23.66 0.00 42.27 3.06
2342 2373 5.982356 TCTCCAGGAGAATCACTTAATGTG 58.018 41.667 17.67 0.00 40.64 3.21
2387 2418 4.802876 GCCATATGCAAGTAAGAGACAC 57.197 45.455 0.00 0.00 40.77 3.67
2471 2503 1.918262 TGGCATCCTCTTTCAGACCAT 59.082 47.619 0.00 0.00 0.00 3.55
2537 2569 7.724061 AGGTGTATTGTAGGTTGATGTCTTTTT 59.276 33.333 0.00 0.00 0.00 1.94
2544 2576 5.712152 AGGTTGATGTCTTTTTCATCCAC 57.288 39.130 0.00 0.00 40.38 4.02
2567 2599 5.140872 CGTAATACGAACAAATGCACACAA 58.859 37.500 7.05 0.00 46.05 3.33
2568 2600 5.792962 CGTAATACGAACAAATGCACACAAT 59.207 36.000 7.05 0.00 46.05 2.71
2569 2601 6.236915 CGTAATACGAACAAATGCACACAATG 60.237 38.462 7.05 0.00 46.05 2.82
2573 2605 4.036262 ACGAACAAATGCACACAATGTAGT 59.964 37.500 0.00 0.00 31.75 2.73
2585 2617 6.619446 GCACACAATGTAGTCAAGAATCTGAC 60.619 42.308 5.19 5.19 45.10 3.51
2688 2733 4.629634 CAGGTCAGCGTATTGTGATGTTAA 59.370 41.667 0.00 0.00 0.00 2.01
2697 2743 2.897271 TGTGATGTTAACATGCCCCT 57.103 45.000 25.42 0.81 36.57 4.79
2749 2795 9.214957 CGCTTAATACCAGTATATGATTTTCCA 57.785 33.333 0.00 0.00 0.00 3.53
2870 2916 4.100035 ACTGAGGATGATGAATCGCTTGTA 59.900 41.667 0.00 0.00 35.99 2.41
2893 2939 5.815581 AGATGCTGAGGTGTGGTAAATTTA 58.184 37.500 0.00 0.00 0.00 1.40
2926 2972 6.203530 CCTACATGTATCAGCTGGTTATTGTG 59.796 42.308 15.13 7.30 0.00 3.33
3002 3048 2.358267 CCATGCTCTTTCTTGCAGGATC 59.642 50.000 0.00 0.00 42.61 3.36
3008 3054 5.948162 TGCTCTTTCTTGCAGGATCTAAAAT 59.052 36.000 0.00 0.00 34.84 1.82
3085 3132 2.891580 GTCCGATGTCAGGCCTCTTATA 59.108 50.000 0.00 0.00 0.00 0.98
3086 3133 3.511934 GTCCGATGTCAGGCCTCTTATAT 59.488 47.826 0.00 0.00 0.00 0.86
3194 3242 9.726232 ATTTTATGATTCAGTTCATGTTCATCG 57.274 29.630 0.00 0.00 36.97 3.84
3254 3302 6.811253 ACTCAGTTGTTGTGTGTAAAGAAA 57.189 33.333 0.00 0.00 32.56 2.52
3321 3369 6.705863 AGGATTGCTTTATGATCCTTTGTC 57.294 37.500 0.00 0.00 45.65 3.18
3417 3482 6.870971 GCTAGCTAGCTCTTTCTCTTACTA 57.129 41.667 33.71 0.00 45.62 1.82
3560 3627 6.370166 TCTTTTGTTTTTGTTTCCGCAAAGAT 59.630 30.769 0.00 0.00 39.20 2.40
3566 3633 5.964887 TTTGTTTCCGCAAAGATGAAAAG 57.035 34.783 0.00 0.00 33.91 2.27
3872 3941 8.467598 ACTTGACTAGCTCGTTAATCAAAGATA 58.532 33.333 0.00 0.00 0.00 1.98
4258 4332 2.364647 TGCAAGCAATGTGACCAATGAA 59.635 40.909 0.00 0.00 0.00 2.57
4516 4591 3.698040 TGTCTACATAGTTCTCGAACCCC 59.302 47.826 6.20 0.00 42.06 4.95
5040 5218 7.040409 CCCAAAGATATAACATTGTCTTAGCCC 60.040 40.741 0.00 0.00 31.16 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.599606 CTGGGTCGGTCAGAGAGGTG 61.600 65.000 0.00 0.00 34.36 4.00
5 6 1.304547 CTGGGTCGGTCAGAGAGGT 60.305 63.158 0.00 0.00 34.36 3.85
6 7 2.055042 CCTGGGTCGGTCAGAGAGG 61.055 68.421 0.00 0.00 34.36 3.69
7 8 2.716017 GCCTGGGTCGGTCAGAGAG 61.716 68.421 0.00 0.00 34.36 3.20
9 10 3.775654 GGCCTGGGTCGGTCAGAG 61.776 72.222 0.00 0.00 34.36 3.35
17 18 2.029307 CTAAGCTACCGGCCTGGGTC 62.029 65.000 16.44 6.33 44.64 4.46
18 19 2.039951 TAAGCTACCGGCCTGGGT 59.960 61.111 16.44 12.37 44.64 4.51
19 20 2.822399 CTAAGCTACCGGCCTGGG 59.178 66.667 16.44 6.84 44.64 4.45
20 21 2.109181 GCTAAGCTACCGGCCTGG 59.891 66.667 0.00 11.48 43.05 4.45
21 22 2.109181 GGCTAAGCTACCGGCCTG 59.891 66.667 0.00 0.00 43.05 4.85
22 23 3.537874 CGGCTAAGCTACCGGCCT 61.538 66.667 13.45 0.00 45.74 5.19
27 28 2.589159 GCTGGCGGCTAAGCTACC 60.589 66.667 11.99 0.00 36.47 3.18
28 29 2.962253 CGCTGGCGGCTAAGCTAC 60.962 66.667 17.54 0.00 37.27 3.58
29 30 3.426117 GACGCTGGCGGCTAAGCTA 62.426 63.158 17.54 0.00 45.30 3.32
30 31 4.821589 GACGCTGGCGGCTAAGCT 62.822 66.667 17.54 6.40 45.30 3.74
40 41 2.642996 TATGGCATGTCGGACGCTGG 62.643 60.000 10.98 0.00 0.00 4.85
41 42 0.601046 ATATGGCATGTCGGACGCTG 60.601 55.000 10.98 5.02 0.00 5.18
42 43 0.966179 TATATGGCATGTCGGACGCT 59.034 50.000 10.98 0.00 0.00 5.07
43 44 1.336887 ACTATATGGCATGTCGGACGC 60.337 52.381 10.98 1.54 0.00 5.19
44 45 2.328473 CACTATATGGCATGTCGGACG 58.672 52.381 10.98 0.00 0.00 4.79
45 46 2.069273 GCACTATATGGCATGTCGGAC 58.931 52.381 10.98 0.00 0.00 4.79
46 47 1.336795 CGCACTATATGGCATGTCGGA 60.337 52.381 10.98 0.00 0.00 4.55
47 48 1.070821 CGCACTATATGGCATGTCGG 58.929 55.000 10.98 3.04 0.00 4.79
48 49 1.070821 CCGCACTATATGGCATGTCG 58.929 55.000 10.98 1.76 0.00 4.35
49 50 1.800586 CACCGCACTATATGGCATGTC 59.199 52.381 10.98 0.00 0.00 3.06
50 51 1.882912 CACCGCACTATATGGCATGT 58.117 50.000 10.98 6.03 0.00 3.21
51 52 0.518636 GCACCGCACTATATGGCATG 59.481 55.000 10.98 0.00 0.00 4.06
52 53 0.108396 TGCACCGCACTATATGGCAT 59.892 50.000 4.88 4.88 31.71 4.40
53 54 0.108396 ATGCACCGCACTATATGGCA 59.892 50.000 0.00 0.00 43.04 4.92
54 55 0.798776 GATGCACCGCACTATATGGC 59.201 55.000 0.00 0.00 43.04 4.40
55 56 2.462456 AGATGCACCGCACTATATGG 57.538 50.000 0.00 0.00 43.04 2.74
56 57 3.185188 GTCAAGATGCACCGCACTATATG 59.815 47.826 0.00 0.00 43.04 1.78
57 58 3.181466 TGTCAAGATGCACCGCACTATAT 60.181 43.478 0.00 0.00 43.04 0.86
58 59 2.167487 TGTCAAGATGCACCGCACTATA 59.833 45.455 0.00 0.00 43.04 1.31
59 60 1.066215 TGTCAAGATGCACCGCACTAT 60.066 47.619 0.00 0.00 43.04 2.12
60 61 0.320050 TGTCAAGATGCACCGCACTA 59.680 50.000 0.00 0.00 43.04 2.74
61 62 0.321919 ATGTCAAGATGCACCGCACT 60.322 50.000 0.00 0.00 43.04 4.40
62 63 0.179181 CATGTCAAGATGCACCGCAC 60.179 55.000 0.00 0.00 43.04 5.34
63 64 0.321475 TCATGTCAAGATGCACCGCA 60.321 50.000 0.00 0.00 44.86 5.69
64 65 1.003116 GATCATGTCAAGATGCACCGC 60.003 52.381 0.00 0.00 0.00 5.68
65 66 2.543012 GAGATCATGTCAAGATGCACCG 59.457 50.000 0.00 0.00 0.00 4.94
66 67 2.543012 CGAGATCATGTCAAGATGCACC 59.457 50.000 0.00 0.00 0.00 5.01
67 68 2.033065 GCGAGATCATGTCAAGATGCAC 60.033 50.000 0.00 0.00 0.00 4.57
68 69 2.207590 GCGAGATCATGTCAAGATGCA 58.792 47.619 0.00 0.00 0.00 3.96
69 70 1.530293 GGCGAGATCATGTCAAGATGC 59.470 52.381 0.00 0.00 0.00 3.91
70 71 3.058450 GAGGCGAGATCATGTCAAGATG 58.942 50.000 0.00 0.00 0.00 2.90
71 72 2.697229 TGAGGCGAGATCATGTCAAGAT 59.303 45.455 0.00 0.00 0.00 2.40
72 73 2.102578 TGAGGCGAGATCATGTCAAGA 58.897 47.619 0.00 0.00 0.00 3.02
73 74 2.200067 GTGAGGCGAGATCATGTCAAG 58.800 52.381 0.00 0.00 0.00 3.02
74 75 1.469767 CGTGAGGCGAGATCATGTCAA 60.470 52.381 0.00 0.00 44.77 3.18
75 76 0.101219 CGTGAGGCGAGATCATGTCA 59.899 55.000 0.00 0.00 44.77 3.58
76 77 0.101399 ACGTGAGGCGAGATCATGTC 59.899 55.000 0.00 0.00 41.91 3.06
77 78 0.179127 CACGTGAGGCGAGATCATGT 60.179 55.000 10.90 4.54 45.51 3.21
78 79 0.179127 ACACGTGAGGCGAGATCATG 60.179 55.000 25.01 0.00 44.77 3.07
79 80 0.179127 CACACGTGAGGCGAGATCAT 60.179 55.000 25.01 0.00 44.77 2.45
80 81 1.212751 CACACGTGAGGCGAGATCA 59.787 57.895 25.01 0.00 44.77 2.92
81 82 1.073216 CACACACGTGAGGCGAGATC 61.073 60.000 25.01 0.00 46.80 2.75
82 83 1.080501 CACACACGTGAGGCGAGAT 60.081 57.895 25.01 0.00 46.80 2.75
83 84 2.335011 CACACACGTGAGGCGAGA 59.665 61.111 25.01 0.00 46.80 4.04
84 85 3.406361 GCACACACGTGAGGCGAG 61.406 66.667 25.01 7.54 46.80 5.03
85 86 3.513768 ATGCACACACGTGAGGCGA 62.514 57.895 25.01 12.58 46.80 5.54
86 87 3.043713 ATGCACACACGTGAGGCG 61.044 61.111 25.01 11.32 46.80 5.52
87 88 2.557805 CATGCACACACGTGAGGC 59.442 61.111 25.01 21.19 46.80 4.70
88 89 1.579964 ATGCATGCACACACGTGAGG 61.580 55.000 25.37 16.14 46.80 3.86
89 90 0.453782 CATGCATGCACACACGTGAG 60.454 55.000 25.37 18.00 46.80 3.51
90 91 1.575423 CATGCATGCACACACGTGA 59.425 52.632 25.37 0.00 46.80 4.35
91 92 4.140301 CATGCATGCACACACGTG 57.860 55.556 25.37 15.48 46.56 4.49
123 124 1.858458 TGAATTACGTCGCATGCTAGC 59.142 47.619 17.13 8.10 0.00 3.42
124 125 2.097202 GCTGAATTACGTCGCATGCTAG 60.097 50.000 17.13 9.16 0.00 3.42
125 126 1.858458 GCTGAATTACGTCGCATGCTA 59.142 47.619 17.13 0.72 0.00 3.49
126 127 0.652592 GCTGAATTACGTCGCATGCT 59.347 50.000 17.13 0.00 0.00 3.79
127 128 0.373370 TGCTGAATTACGTCGCATGC 59.627 50.000 7.91 7.91 0.00 4.06
128 129 4.652175 ATATGCTGAATTACGTCGCATG 57.348 40.909 0.00 0.00 37.87 4.06
129 130 4.323602 CGTATATGCTGAATTACGTCGCAT 59.676 41.667 0.00 0.91 39.42 4.73
130 131 3.666797 CGTATATGCTGAATTACGTCGCA 59.333 43.478 0.00 0.00 33.71 5.10
131 132 3.059044 CCGTATATGCTGAATTACGTCGC 59.941 47.826 0.00 0.00 0.00 5.19
132 133 4.469552 TCCGTATATGCTGAATTACGTCG 58.530 43.478 0.00 0.00 0.00 5.12
133 134 5.458891 ACTCCGTATATGCTGAATTACGTC 58.541 41.667 0.00 0.00 0.00 4.34
134 135 5.449107 ACTCCGTATATGCTGAATTACGT 57.551 39.130 0.00 0.00 0.00 3.57
135 136 6.376177 TGTACTCCGTATATGCTGAATTACG 58.624 40.000 0.00 0.00 0.00 3.18
136 137 7.149015 CGTTGTACTCCGTATATGCTGAATTAC 60.149 40.741 0.00 0.00 0.00 1.89
137 138 6.859508 CGTTGTACTCCGTATATGCTGAATTA 59.140 38.462 0.00 0.00 0.00 1.40
138 139 5.690409 CGTTGTACTCCGTATATGCTGAATT 59.310 40.000 0.00 0.00 0.00 2.17
139 140 5.220381 CGTTGTACTCCGTATATGCTGAAT 58.780 41.667 0.00 0.00 0.00 2.57
140 141 4.096833 ACGTTGTACTCCGTATATGCTGAA 59.903 41.667 8.33 0.00 35.16 3.02
141 142 3.628942 ACGTTGTACTCCGTATATGCTGA 59.371 43.478 8.33 0.00 35.16 4.26
142 143 3.961182 ACGTTGTACTCCGTATATGCTG 58.039 45.455 8.33 0.00 35.16 4.41
143 144 4.818546 AGTACGTTGTACTCCGTATATGCT 59.181 41.667 16.68 9.17 41.10 3.79
144 145 5.100751 AGTACGTTGTACTCCGTATATGC 57.899 43.478 16.68 7.56 41.10 3.14
145 146 7.630026 TGTAAGTACGTTGTACTCCGTATATG 58.370 38.462 16.68 0.00 41.10 1.78
146 147 7.786178 TGTAAGTACGTTGTACTCCGTATAT 57.214 36.000 16.68 12.37 41.10 0.86
147 148 7.630026 CATGTAAGTACGTTGTACTCCGTATA 58.370 38.462 16.68 7.23 41.10 1.47
148 149 6.489675 CATGTAAGTACGTTGTACTCCGTAT 58.510 40.000 16.68 7.96 41.10 3.06
149 150 5.673568 GCATGTAAGTACGTTGTACTCCGTA 60.674 44.000 9.83 11.76 38.43 4.02
150 151 4.726416 CATGTAAGTACGTTGTACTCCGT 58.274 43.478 9.83 13.43 40.87 4.69
151 152 3.545078 GCATGTAAGTACGTTGTACTCCG 59.455 47.826 9.83 0.00 0.00 4.63
152 153 4.741342 AGCATGTAAGTACGTTGTACTCC 58.259 43.478 9.83 5.27 0.00 3.85
153 154 7.982371 ATAAGCATGTAAGTACGTTGTACTC 57.018 36.000 9.83 0.40 0.00 2.59
154 155 9.294030 GTAATAAGCATGTAAGTACGTTGTACT 57.706 33.333 3.85 3.85 0.00 2.73
155 156 9.294030 AGTAATAAGCATGTAAGTACGTTGTAC 57.706 33.333 0.00 0.00 0.00 2.90
157 158 9.512435 CTAGTAATAAGCATGTAAGTACGTTGT 57.488 33.333 0.00 0.00 0.00 3.32
158 159 9.726232 TCTAGTAATAAGCATGTAAGTACGTTG 57.274 33.333 0.00 0.00 0.00 4.10
159 160 9.727627 GTCTAGTAATAAGCATGTAAGTACGTT 57.272 33.333 0.00 0.00 0.00 3.99
160 161 8.066595 CGTCTAGTAATAAGCATGTAAGTACGT 58.933 37.037 0.00 0.00 0.00 3.57
161 162 7.059260 GCGTCTAGTAATAAGCATGTAAGTACG 59.941 40.741 0.00 0.00 0.00 3.67
162 163 7.859377 TGCGTCTAGTAATAAGCATGTAAGTAC 59.141 37.037 0.00 0.00 0.00 2.73
163 164 7.933396 TGCGTCTAGTAATAAGCATGTAAGTA 58.067 34.615 0.00 0.00 0.00 2.24
164 165 6.802608 TGCGTCTAGTAATAAGCATGTAAGT 58.197 36.000 0.00 0.00 0.00 2.24
165 166 6.918569 ACTGCGTCTAGTAATAAGCATGTAAG 59.081 38.462 0.00 0.00 33.96 2.34
166 167 6.802608 ACTGCGTCTAGTAATAAGCATGTAA 58.197 36.000 0.00 0.00 33.96 2.41
167 168 6.387041 ACTGCGTCTAGTAATAAGCATGTA 57.613 37.500 0.00 0.00 33.96 2.29
168 169 5.263968 ACTGCGTCTAGTAATAAGCATGT 57.736 39.130 0.00 0.00 33.96 3.21
169 170 5.343593 GCTACTGCGTCTAGTAATAAGCATG 59.656 44.000 0.00 0.00 33.09 4.06
170 171 5.462405 GCTACTGCGTCTAGTAATAAGCAT 58.538 41.667 0.00 0.00 33.09 3.79
171 172 4.856664 GCTACTGCGTCTAGTAATAAGCA 58.143 43.478 0.00 0.00 33.09 3.91
195 196 3.857854 GTGACATGCTCGCTGGCG 61.858 66.667 8.80 8.80 41.35 5.69
196 197 3.503363 GGTGACATGCTCGCTGGC 61.503 66.667 0.00 0.00 0.00 4.85
197 198 2.046988 TGGTGACATGCTCGCTGG 60.047 61.111 0.00 0.00 33.40 4.85
198 199 1.668793 TGTGGTGACATGCTCGCTG 60.669 57.895 0.00 0.00 46.14 5.18
199 200 1.669115 GTGTGGTGACATGCTCGCT 60.669 57.895 0.00 0.00 46.14 4.93
200 201 1.230635 AAGTGTGGTGACATGCTCGC 61.231 55.000 0.00 0.00 46.14 5.03
201 202 1.195448 GAAAGTGTGGTGACATGCTCG 59.805 52.381 0.00 0.00 46.14 5.03
202 203 1.195448 CGAAAGTGTGGTGACATGCTC 59.805 52.381 0.00 0.00 46.14 4.26
203 204 1.229428 CGAAAGTGTGGTGACATGCT 58.771 50.000 0.00 0.00 46.14 3.79
204 205 0.385974 GCGAAAGTGTGGTGACATGC 60.386 55.000 0.00 0.00 46.14 4.06
205 206 0.943673 TGCGAAAGTGTGGTGACATG 59.056 50.000 0.00 0.00 46.14 3.21
206 207 1.536766 CATGCGAAAGTGTGGTGACAT 59.463 47.619 0.00 0.00 46.14 3.06
207 208 0.943673 CATGCGAAAGTGTGGTGACA 59.056 50.000 0.00 0.00 38.70 3.58
208 209 0.385974 GCATGCGAAAGTGTGGTGAC 60.386 55.000 0.00 0.00 0.00 3.67
209 210 1.840630 CGCATGCGAAAGTGTGGTGA 61.841 55.000 35.82 0.00 42.83 4.02
210 211 1.440850 CGCATGCGAAAGTGTGGTG 60.441 57.895 35.82 0.00 42.83 4.17
211 212 2.945984 CGCATGCGAAAGTGTGGT 59.054 55.556 35.82 0.00 42.83 4.16
212 213 2.502510 GCGCATGCGAAAGTGTGG 60.503 61.111 41.98 11.73 42.83 4.17
222 223 2.249535 AGATGGATCGTGCGCATGC 61.250 57.895 24.82 7.91 43.20 4.06
223 224 0.877213 TCAGATGGATCGTGCGCATG 60.877 55.000 23.73 23.73 0.00 4.06
224 225 0.877649 GTCAGATGGATCGTGCGCAT 60.878 55.000 15.91 0.00 0.00 4.73
225 226 1.519234 GTCAGATGGATCGTGCGCA 60.519 57.895 5.66 5.66 0.00 6.09
226 227 1.519234 TGTCAGATGGATCGTGCGC 60.519 57.895 0.00 0.00 0.00 6.09
227 228 1.474648 CGTGTCAGATGGATCGTGCG 61.475 60.000 0.00 0.00 0.00 5.34
228 229 1.756375 GCGTGTCAGATGGATCGTGC 61.756 60.000 0.00 0.00 0.00 5.34
229 230 1.474648 CGCGTGTCAGATGGATCGTG 61.475 60.000 0.00 0.00 33.00 4.35
230 231 1.226688 CGCGTGTCAGATGGATCGT 60.227 57.895 0.00 0.00 0.00 3.73
231 232 1.226688 ACGCGTGTCAGATGGATCG 60.227 57.895 12.93 0.00 0.00 3.69
232 233 1.148157 CCACGCGTGTCAGATGGATC 61.148 60.000 34.81 0.00 31.69 3.36
233 234 1.153568 CCACGCGTGTCAGATGGAT 60.154 57.895 34.81 0.00 31.69 3.41
234 235 2.261361 CCACGCGTGTCAGATGGA 59.739 61.111 34.81 0.00 31.69 3.41
235 236 2.815211 CCCACGCGTGTCAGATGG 60.815 66.667 34.81 24.22 0.00 3.51
236 237 3.490759 GCCCACGCGTGTCAGATG 61.491 66.667 34.81 19.59 0.00 2.90
250 251 4.919987 GAGTAGTACCGCGCGCCC 62.920 72.222 27.36 14.03 0.00 6.13
251 252 4.183686 TGAGTAGTACCGCGCGCC 62.184 66.667 27.36 14.43 0.00 6.53
252 253 2.948134 GTGAGTAGTACCGCGCGC 60.948 66.667 27.36 23.91 0.00 6.86
253 254 2.277756 GGTGAGTAGTACCGCGCG 60.278 66.667 25.67 25.67 0.00 6.86
254 255 1.226603 CAGGTGAGTAGTACCGCGC 60.227 63.158 0.00 0.00 43.06 6.86
255 256 1.432251 CCAGGTGAGTAGTACCGCG 59.568 63.158 0.00 0.00 43.06 6.46
256 257 1.141234 GCCAGGTGAGTAGTACCGC 59.859 63.158 0.00 0.00 43.06 5.68
257 258 1.673808 GGGCCAGGTGAGTAGTACCG 61.674 65.000 4.39 0.00 43.06 4.02
258 259 1.335882 GGGGCCAGGTGAGTAGTACC 61.336 65.000 4.39 0.00 38.52 3.34
259 260 1.335882 GGGGGCCAGGTGAGTAGTAC 61.336 65.000 4.39 0.00 0.00 2.73
260 261 1.002533 GGGGGCCAGGTGAGTAGTA 59.997 63.158 4.39 0.00 0.00 1.82
261 262 2.285442 GGGGGCCAGGTGAGTAGT 60.285 66.667 4.39 0.00 0.00 2.73
262 263 3.470888 CGGGGGCCAGGTGAGTAG 61.471 72.222 4.39 0.00 0.00 2.57
287 288 2.105960 ATAGTACGTACGTCGGCGGC 62.106 60.000 26.53 3.25 44.69 6.53
288 289 1.136611 GTATAGTACGTACGTCGGCGG 60.137 57.143 26.53 0.00 44.69 6.13
289 290 1.458665 CGTATAGTACGTACGTCGGCG 60.459 57.143 26.53 8.42 46.41 6.46
290 291 2.198273 CGTATAGTACGTACGTCGGC 57.802 55.000 26.53 15.99 46.41 5.54
309 310 1.467035 CGAAGCTGGTCCACGTAGTAC 60.467 57.143 0.00 0.00 41.61 2.73
310 311 0.806868 CGAAGCTGGTCCACGTAGTA 59.193 55.000 0.00 0.00 41.61 1.82
312 313 1.153823 CCGAAGCTGGTCCACGTAG 60.154 63.158 0.00 0.00 0.00 3.51
313 314 2.967397 CCGAAGCTGGTCCACGTA 59.033 61.111 0.00 0.00 0.00 3.57
314 315 4.681978 GCCGAAGCTGGTCCACGT 62.682 66.667 0.00 0.00 35.50 4.49
333 334 2.813179 CTACGTGCTCATTGCCGCC 61.813 63.158 0.00 0.00 42.00 6.13
334 335 2.703409 CTACGTGCTCATTGCCGC 59.297 61.111 0.00 0.00 42.00 6.53
335 336 2.100031 TGCTACGTGCTCATTGCCG 61.100 57.895 0.00 0.00 43.37 5.69
336 337 1.425428 GTGCTACGTGCTCATTGCC 59.575 57.895 0.00 0.00 43.37 4.52
337 338 1.021390 AGGTGCTACGTGCTCATTGC 61.021 55.000 0.00 0.00 43.37 3.56
338 339 1.002366 GAGGTGCTACGTGCTCATTG 58.998 55.000 0.00 0.00 43.37 2.82
339 340 0.458543 CGAGGTGCTACGTGCTCATT 60.459 55.000 0.00 0.00 43.37 2.57
340 341 1.139734 CGAGGTGCTACGTGCTCAT 59.860 57.895 0.00 0.00 43.37 2.90
341 342 2.566529 CGAGGTGCTACGTGCTCA 59.433 61.111 0.00 0.00 43.37 4.26
342 343 2.881352 GCGAGGTGCTACGTGCTC 60.881 66.667 0.00 0.75 43.37 4.26
354 355 4.965858 GACGGCGATCGAGCGAGG 62.966 72.222 29.29 19.17 42.43 4.63
355 356 4.965858 GGACGGCGATCGAGCGAG 62.966 72.222 29.29 21.31 42.43 5.03
357 358 4.630785 ATGGACGGCGATCGAGCG 62.631 66.667 20.40 20.40 42.43 5.03
358 359 1.822250 GAAATGGACGGCGATCGAGC 61.822 60.000 21.57 0.79 42.43 5.03
359 360 0.249073 AGAAATGGACGGCGATCGAG 60.249 55.000 21.57 14.33 42.43 4.04
360 361 0.248907 GAGAAATGGACGGCGATCGA 60.249 55.000 21.57 5.19 42.43 3.59
361 362 1.540607 CGAGAAATGGACGGCGATCG 61.541 60.000 16.62 11.69 45.88 3.69
362 363 1.215655 CCGAGAAATGGACGGCGATC 61.216 60.000 16.62 7.47 40.19 3.69
363 364 1.227263 CCGAGAAATGGACGGCGAT 60.227 57.895 16.62 0.00 40.19 4.58
364 365 2.183300 CCGAGAAATGGACGGCGA 59.817 61.111 16.62 0.00 40.19 5.54
368 369 1.262417 CATGATGCCGAGAAATGGACG 59.738 52.381 0.00 0.00 0.00 4.79
369 370 1.002033 GCATGATGCCGAGAAATGGAC 60.002 52.381 6.04 0.00 37.42 4.02
370 371 1.311859 GCATGATGCCGAGAAATGGA 58.688 50.000 6.04 0.00 37.42 3.41
371 372 1.026584 TGCATGATGCCGAGAAATGG 58.973 50.000 15.70 0.00 44.23 3.16
372 373 2.292292 TCATGCATGATGCCGAGAAATG 59.708 45.455 25.42 10.56 44.23 2.32
373 374 2.578786 TCATGCATGATGCCGAGAAAT 58.421 42.857 25.42 0.00 44.23 2.17
374 375 2.041251 TCATGCATGATGCCGAGAAA 57.959 45.000 25.42 0.00 44.23 2.52
375 376 2.265589 ATCATGCATGATGCCGAGAA 57.734 45.000 35.54 11.11 45.27 2.87
384 385 6.682423 ATAAAACGAAGACATCATGCATGA 57.318 33.333 30.47 30.47 41.70 3.07
385 386 7.745022 AAATAAAACGAAGACATCATGCATG 57.255 32.000 21.07 21.07 38.64 4.06
387 388 9.502145 GATAAAATAAAACGAAGACATCATGCA 57.498 29.630 0.00 0.00 0.00 3.96
388 389 9.502145 TGATAAAATAAAACGAAGACATCATGC 57.498 29.630 0.00 0.00 0.00 4.06
407 408 9.436957 GTACTCAGAGGTCAAGAAATGATAAAA 57.563 33.333 1.53 0.00 40.97 1.52
408 409 8.593679 TGTACTCAGAGGTCAAGAAATGATAAA 58.406 33.333 1.53 0.00 40.97 1.40
409 410 8.134202 TGTACTCAGAGGTCAAGAAATGATAA 57.866 34.615 1.53 0.00 40.97 1.75
410 411 7.615757 TCTGTACTCAGAGGTCAAGAAATGATA 59.384 37.037 1.53 0.00 44.58 2.15
411 412 6.438741 TCTGTACTCAGAGGTCAAGAAATGAT 59.561 38.462 1.53 0.00 44.58 2.45
412 413 5.775195 TCTGTACTCAGAGGTCAAGAAATGA 59.225 40.000 1.53 0.00 44.58 2.57
413 414 6.030548 TCTGTACTCAGAGGTCAAGAAATG 57.969 41.667 1.53 0.00 44.58 2.32
426 427 3.612860 GCGTTTGGTGTATCTGTACTCAG 59.387 47.826 0.00 0.00 42.54 3.35
427 428 3.581755 GCGTTTGGTGTATCTGTACTCA 58.418 45.455 0.00 0.00 0.00 3.41
428 429 2.597305 CGCGTTTGGTGTATCTGTACTC 59.403 50.000 0.00 0.00 0.00 2.59
429 430 2.602878 CGCGTTTGGTGTATCTGTACT 58.397 47.619 0.00 0.00 0.00 2.73
430 431 1.060122 GCGCGTTTGGTGTATCTGTAC 59.940 52.381 8.43 0.00 0.00 2.90
431 432 1.336980 TGCGCGTTTGGTGTATCTGTA 60.337 47.619 8.43 0.00 0.00 2.74
432 433 0.601576 TGCGCGTTTGGTGTATCTGT 60.602 50.000 8.43 0.00 0.00 3.41
433 434 0.515127 TTGCGCGTTTGGTGTATCTG 59.485 50.000 8.43 0.00 0.00 2.90
434 435 1.231221 TTTGCGCGTTTGGTGTATCT 58.769 45.000 8.43 0.00 0.00 1.98
435 436 2.039327 TTTTGCGCGTTTGGTGTATC 57.961 45.000 8.43 0.00 0.00 2.24
436 437 2.493713 TTTTTGCGCGTTTGGTGTAT 57.506 40.000 8.43 0.00 0.00 2.29
438 439 4.891566 TTTTTGCGCGTTTGGTGT 57.108 44.444 8.43 0.00 0.00 4.16
455 456 7.062749 TGTGGTGTGTCTATACTCTCTTTTT 57.937 36.000 0.00 0.00 0.00 1.94
456 457 6.267928 ACTGTGGTGTGTCTATACTCTCTTTT 59.732 38.462 0.00 0.00 0.00 2.27
457 458 5.775701 ACTGTGGTGTGTCTATACTCTCTTT 59.224 40.000 0.00 0.00 0.00 2.52
458 459 5.326069 ACTGTGGTGTGTCTATACTCTCTT 58.674 41.667 0.00 0.00 0.00 2.85
459 460 4.924625 ACTGTGGTGTGTCTATACTCTCT 58.075 43.478 0.00 0.00 0.00 3.10
460 461 4.700692 TGACTGTGGTGTGTCTATACTCTC 59.299 45.833 0.00 0.00 34.57 3.20
461 462 4.459685 GTGACTGTGGTGTGTCTATACTCT 59.540 45.833 0.00 0.00 34.57 3.24
462 463 4.217767 TGTGACTGTGGTGTGTCTATACTC 59.782 45.833 0.00 0.00 34.57 2.59
463 464 4.149598 TGTGACTGTGGTGTGTCTATACT 58.850 43.478 0.00 0.00 34.57 2.12
464 465 4.514781 TGTGACTGTGGTGTGTCTATAC 57.485 45.455 0.00 0.00 34.57 1.47
465 466 6.661805 TCTTATGTGACTGTGGTGTGTCTATA 59.338 38.462 0.00 0.00 34.57 1.31
466 467 5.480422 TCTTATGTGACTGTGGTGTGTCTAT 59.520 40.000 0.00 0.00 34.57 1.98
467 468 4.830600 TCTTATGTGACTGTGGTGTGTCTA 59.169 41.667 0.00 0.00 34.57 2.59
468 469 3.641436 TCTTATGTGACTGTGGTGTGTCT 59.359 43.478 0.00 0.00 34.57 3.41
469 470 3.741344 GTCTTATGTGACTGTGGTGTGTC 59.259 47.826 0.00 0.00 34.39 3.67
470 471 3.133901 TGTCTTATGTGACTGTGGTGTGT 59.866 43.478 0.00 0.00 37.79 3.72
471 472 3.727726 TGTCTTATGTGACTGTGGTGTG 58.272 45.455 0.00 0.00 37.79 3.82
472 473 4.623932 ATGTCTTATGTGACTGTGGTGT 57.376 40.909 0.00 0.00 37.79 4.16
473 474 5.931724 TGTTATGTCTTATGTGACTGTGGTG 59.068 40.000 0.00 0.00 37.79 4.17
474 475 5.932303 GTGTTATGTCTTATGTGACTGTGGT 59.068 40.000 0.00 0.00 37.79 4.16
475 476 6.166279 AGTGTTATGTCTTATGTGACTGTGG 58.834 40.000 0.00 0.00 37.79 4.17
476 477 7.812669 TGTAGTGTTATGTCTTATGTGACTGTG 59.187 37.037 0.00 0.00 37.79 3.66
477 478 7.892609 TGTAGTGTTATGTCTTATGTGACTGT 58.107 34.615 0.00 0.00 37.79 3.55
478 479 8.932945 ATGTAGTGTTATGTCTTATGTGACTG 57.067 34.615 0.00 0.00 37.79 3.51
479 480 9.944376 AAATGTAGTGTTATGTCTTATGTGACT 57.056 29.630 0.00 0.00 37.79 3.41
509 510 9.849166 GGATATTTTCTCGTGGAATTGTTTTTA 57.151 29.630 0.00 0.00 33.53 1.52
510 511 7.817478 GGGATATTTTCTCGTGGAATTGTTTTT 59.183 33.333 0.00 0.00 33.53 1.94
511 512 7.320399 GGGATATTTTCTCGTGGAATTGTTTT 58.680 34.615 0.00 0.00 33.53 2.43
512 513 6.404293 CGGGATATTTTCTCGTGGAATTGTTT 60.404 38.462 0.00 0.00 43.62 2.83
513 514 5.065988 CGGGATATTTTCTCGTGGAATTGTT 59.934 40.000 0.00 0.00 43.62 2.83
514 515 4.574828 CGGGATATTTTCTCGTGGAATTGT 59.425 41.667 0.00 0.00 43.62 2.71
515 516 5.095691 CGGGATATTTTCTCGTGGAATTG 57.904 43.478 0.00 0.00 43.62 2.32
524 525 3.306433 GGAGGAGAGCGGGATATTTTCTC 60.306 52.174 0.00 0.00 34.86 2.87
525 526 2.635427 GGAGGAGAGCGGGATATTTTCT 59.365 50.000 0.00 0.00 0.00 2.52
526 527 2.610727 CGGAGGAGAGCGGGATATTTTC 60.611 54.545 0.00 0.00 0.00 2.29
527 528 1.344763 CGGAGGAGAGCGGGATATTTT 59.655 52.381 0.00 0.00 0.00 1.82
528 529 0.969894 CGGAGGAGAGCGGGATATTT 59.030 55.000 0.00 0.00 0.00 1.40
529 530 2.659800 CGGAGGAGAGCGGGATATT 58.340 57.895 0.00 0.00 0.00 1.28
530 531 4.425099 CGGAGGAGAGCGGGATAT 57.575 61.111 0.00 0.00 0.00 1.63
554 555 2.788191 GAAGAGGGGTGCCGTCTGTG 62.788 65.000 0.00 0.00 46.36 3.66
555 556 2.526873 AAGAGGGGTGCCGTCTGT 60.527 61.111 0.00 0.00 46.36 3.41
556 557 2.266055 GAAGAGGGGTGCCGTCTG 59.734 66.667 0.00 0.00 46.36 3.51
558 559 2.047179 GTGAAGAGGGGTGCCGTC 60.047 66.667 0.00 0.00 38.54 4.79
559 560 3.637273 GGTGAAGAGGGGTGCCGT 61.637 66.667 0.00 0.00 0.00 5.68
560 561 3.322466 AGGTGAAGAGGGGTGCCG 61.322 66.667 0.00 0.00 0.00 5.69
561 562 2.352805 CAGGTGAAGAGGGGTGCC 59.647 66.667 0.00 0.00 0.00 5.01
562 563 2.360475 GCAGGTGAAGAGGGGTGC 60.360 66.667 0.00 0.00 0.00 5.01
563 564 2.190488 GAGGCAGGTGAAGAGGGGTG 62.190 65.000 0.00 0.00 0.00 4.61
564 565 1.920835 GAGGCAGGTGAAGAGGGGT 60.921 63.158 0.00 0.00 0.00 4.95
565 566 1.204113 AAGAGGCAGGTGAAGAGGGG 61.204 60.000 0.00 0.00 0.00 4.79
566 567 0.695347 AAAGAGGCAGGTGAAGAGGG 59.305 55.000 0.00 0.00 0.00 4.30
567 568 1.339535 GGAAAGAGGCAGGTGAAGAGG 60.340 57.143 0.00 0.00 0.00 3.69
568 569 1.339535 GGGAAAGAGGCAGGTGAAGAG 60.340 57.143 0.00 0.00 0.00 2.85
569 570 0.693049 GGGAAAGAGGCAGGTGAAGA 59.307 55.000 0.00 0.00 0.00 2.87
570 571 0.322906 GGGGAAAGAGGCAGGTGAAG 60.323 60.000 0.00 0.00 0.00 3.02
571 572 1.767692 GGGGAAAGAGGCAGGTGAA 59.232 57.895 0.00 0.00 0.00 3.18
572 573 2.231380 GGGGGAAAGAGGCAGGTGA 61.231 63.158 0.00 0.00 0.00 4.02
573 574 1.793820 AAGGGGGAAAGAGGCAGGTG 61.794 60.000 0.00 0.00 0.00 4.00
574 575 1.466186 AAGGGGGAAAGAGGCAGGT 60.466 57.895 0.00 0.00 0.00 4.00
575 576 1.210885 AGAAGGGGGAAAGAGGCAGG 61.211 60.000 0.00 0.00 0.00 4.85
576 577 0.254462 GAGAAGGGGGAAAGAGGCAG 59.746 60.000 0.00 0.00 0.00 4.85
577 578 0.178861 AGAGAAGGGGGAAAGAGGCA 60.179 55.000 0.00 0.00 0.00 4.75
578 579 0.544223 GAGAGAAGGGGGAAAGAGGC 59.456 60.000 0.00 0.00 0.00 4.70
579 580 1.208706 GGAGAGAAGGGGGAAAGAGG 58.791 60.000 0.00 0.00 0.00 3.69
580 581 1.208706 GGGAGAGAAGGGGGAAAGAG 58.791 60.000 0.00 0.00 0.00 2.85
581 582 0.617820 CGGGAGAGAAGGGGGAAAGA 60.618 60.000 0.00 0.00 0.00 2.52
582 583 0.910088 ACGGGAGAGAAGGGGGAAAG 60.910 60.000 0.00 0.00 0.00 2.62
583 584 1.160145 ACGGGAGAGAAGGGGGAAA 59.840 57.895 0.00 0.00 0.00 3.13
584 585 1.612442 CACGGGAGAGAAGGGGGAA 60.612 63.158 0.00 0.00 0.00 3.97
585 586 2.038975 CACGGGAGAGAAGGGGGA 59.961 66.667 0.00 0.00 0.00 4.81
586 587 2.038975 TCACGGGAGAGAAGGGGG 59.961 66.667 0.00 0.00 0.00 5.40
587 588 2.359967 GGTCACGGGAGAGAAGGGG 61.360 68.421 0.00 0.00 0.00 4.79
588 589 2.711922 CGGTCACGGGAGAGAAGGG 61.712 68.421 0.00 0.00 36.18 3.95
589 590 1.977544 ACGGTCACGGGAGAGAAGG 60.978 63.158 0.00 0.00 46.48 3.46
590 591 3.682792 ACGGTCACGGGAGAGAAG 58.317 61.111 0.00 0.00 46.48 2.85
602 603 3.959991 GAAGCAGGAGCCCACGGTC 62.960 68.421 0.00 0.00 43.56 4.79
603 604 4.021925 GAAGCAGGAGCCCACGGT 62.022 66.667 0.00 0.00 43.56 4.83
604 605 4.785453 GGAAGCAGGAGCCCACGG 62.785 72.222 0.00 0.00 43.56 4.94
605 606 3.335356 ATGGAAGCAGGAGCCCACG 62.335 63.158 0.00 0.00 43.56 4.94
606 607 1.452833 GATGGAAGCAGGAGCCCAC 60.453 63.158 0.00 0.00 43.56 4.61
607 608 1.284111 ATGATGGAAGCAGGAGCCCA 61.284 55.000 0.00 0.00 43.56 5.36
608 609 0.822532 CATGATGGAAGCAGGAGCCC 60.823 60.000 0.00 0.00 35.09 5.19
609 610 1.453762 GCATGATGGAAGCAGGAGCC 61.454 60.000 0.00 0.00 35.09 4.70
610 611 0.750546 TGCATGATGGAAGCAGGAGC 60.751 55.000 0.00 0.00 35.09 4.70
611 612 3.489391 TGCATGATGGAAGCAGGAG 57.511 52.632 0.00 0.00 35.09 3.69
615 616 1.963172 CTAGCTGCATGATGGAAGCA 58.037 50.000 1.02 0.00 35.55 3.91
616 617 0.592148 GCTAGCTGCATGATGGAAGC 59.408 55.000 7.70 0.00 42.31 3.86
627 628 1.086696 TTGTTTCGGATGCTAGCTGC 58.913 50.000 17.23 7.56 43.25 5.25
628 629 4.024556 CCTTATTGTTTCGGATGCTAGCTG 60.025 45.833 17.23 3.43 0.00 4.24
629 630 4.130118 CCTTATTGTTTCGGATGCTAGCT 58.870 43.478 17.23 0.83 0.00 3.32
630 631 3.877508 ACCTTATTGTTTCGGATGCTAGC 59.122 43.478 8.10 8.10 0.00 3.42
631 632 6.018994 GTGTACCTTATTGTTTCGGATGCTAG 60.019 42.308 0.00 0.00 0.00 3.42
632 633 5.813672 GTGTACCTTATTGTTTCGGATGCTA 59.186 40.000 0.00 0.00 0.00 3.49
633 634 4.634443 GTGTACCTTATTGTTTCGGATGCT 59.366 41.667 0.00 0.00 0.00 3.79
634 635 4.393680 TGTGTACCTTATTGTTTCGGATGC 59.606 41.667 0.00 0.00 0.00 3.91
635 636 5.410132 TGTGTGTACCTTATTGTTTCGGATG 59.590 40.000 0.00 0.00 0.00 3.51
636 637 5.553123 TGTGTGTACCTTATTGTTTCGGAT 58.447 37.500 0.00 0.00 0.00 4.18
637 638 4.958509 TGTGTGTACCTTATTGTTTCGGA 58.041 39.130 0.00 0.00 0.00 4.55
638 639 5.676532 TTGTGTGTACCTTATTGTTTCGG 57.323 39.130 0.00 0.00 0.00 4.30
639 640 5.617992 CGTTTGTGTGTACCTTATTGTTTCG 59.382 40.000 0.00 0.00 0.00 3.46
640 641 5.397240 GCGTTTGTGTGTACCTTATTGTTTC 59.603 40.000 0.00 0.00 0.00 2.78
641 642 5.066764 AGCGTTTGTGTGTACCTTATTGTTT 59.933 36.000 0.00 0.00 0.00 2.83
642 643 4.577283 AGCGTTTGTGTGTACCTTATTGTT 59.423 37.500 0.00 0.00 0.00 2.83
643 644 4.131596 AGCGTTTGTGTGTACCTTATTGT 58.868 39.130 0.00 0.00 0.00 2.71
644 645 4.665645 CGAGCGTTTGTGTGTACCTTATTG 60.666 45.833 0.00 0.00 0.00 1.90
645 646 3.430895 CGAGCGTTTGTGTGTACCTTATT 59.569 43.478 0.00 0.00 0.00 1.40
646 647 2.991190 CGAGCGTTTGTGTGTACCTTAT 59.009 45.455 0.00 0.00 0.00 1.73
647 648 2.396601 CGAGCGTTTGTGTGTACCTTA 58.603 47.619 0.00 0.00 0.00 2.69
648 649 1.214367 CGAGCGTTTGTGTGTACCTT 58.786 50.000 0.00 0.00 0.00 3.50
649 650 1.219522 GCGAGCGTTTGTGTGTACCT 61.220 55.000 0.00 0.00 0.00 3.08
650 651 1.203313 GCGAGCGTTTGTGTGTACC 59.797 57.895 0.00 0.00 0.00 3.34
651 652 0.161024 GAGCGAGCGTTTGTGTGTAC 59.839 55.000 0.00 0.00 0.00 2.90
652 653 1.272784 CGAGCGAGCGTTTGTGTGTA 61.273 55.000 0.00 0.00 0.00 2.90
653 654 2.585869 CGAGCGAGCGTTTGTGTGT 61.586 57.895 0.00 0.00 0.00 3.72
654 655 2.168621 CGAGCGAGCGTTTGTGTG 59.831 61.111 0.00 0.00 0.00 3.82
655 656 3.702555 GCGAGCGAGCGTTTGTGT 61.703 61.111 0.00 0.00 0.00 3.72
656 657 4.430423 GGCGAGCGAGCGTTTGTG 62.430 66.667 0.00 0.00 38.18 3.33
657 658 2.558554 ATAGGCGAGCGAGCGTTTGT 62.559 55.000 6.93 0.00 38.18 2.83
658 659 1.878522 ATAGGCGAGCGAGCGTTTG 60.879 57.895 6.93 0.00 38.18 2.93
659 660 1.878522 CATAGGCGAGCGAGCGTTT 60.879 57.895 6.93 0.00 38.18 3.60
660 661 2.278857 CATAGGCGAGCGAGCGTT 60.279 61.111 6.93 0.00 38.18 4.84
661 662 4.933064 GCATAGGCGAGCGAGCGT 62.933 66.667 6.84 6.84 38.18 5.07
663 664 4.592192 TGGCATAGGCGAGCGAGC 62.592 66.667 0.00 0.00 42.47 5.03
664 665 2.659897 GTGGCATAGGCGAGCGAG 60.660 66.667 0.00 0.00 42.47 5.03
675 676 2.095768 CAGTGAAATTCGAACGTGGCAT 60.096 45.455 0.00 0.00 0.00 4.40
684 685 0.871722 CCCGCAACAGTGAAATTCGA 59.128 50.000 0.00 0.00 0.00 3.71
692 695 3.065575 GGTAGATCCCGCAACAGTG 57.934 57.895 0.00 0.00 0.00 3.66
750 756 2.615447 CGATGCATTGTTGACTGCCTAT 59.385 45.455 0.00 0.00 37.59 2.57
808 814 2.037527 GGGGAGGAGGAGACGTGT 59.962 66.667 0.00 0.00 0.00 4.49
856 880 2.604686 ACCTTGCTCCAGCCGAGA 60.605 61.111 2.62 0.00 41.63 4.04
888 913 4.148825 AGGTGGCATCGCGAGGAC 62.149 66.667 26.77 24.33 0.00 3.85
997 1026 0.608640 GGAGAAGGAGAACTTGCCGA 59.391 55.000 0.00 0.00 40.21 5.54
1032 1061 1.196012 GGGATGGAGAGAAGAACGGT 58.804 55.000 0.00 0.00 0.00 4.83
1039 1068 2.045524 GATGAGCAGGGATGGAGAGAA 58.954 52.381 0.00 0.00 0.00 2.87
1057 1086 0.985490 GCAGTCAAGGAGGAGGGGAT 60.985 60.000 0.00 0.00 0.00 3.85
1074 1103 2.455557 CTTCAGAGGAGAAGAGAGGCA 58.544 52.381 0.00 0.00 46.18 4.75
1167 1196 2.236223 CTCAGACACCGGCATGAGCT 62.236 60.000 0.00 0.00 41.70 4.09
1214 1243 2.334946 CCGACCCGTCTCCGTACAA 61.335 63.158 0.00 0.00 0.00 2.41
1277 1306 0.101399 CGTCCTCCTTCACATCCTCG 59.899 60.000 0.00 0.00 0.00 4.63
1327 1356 1.577328 GCTTGGCAAGCGAGCTAACA 61.577 55.000 33.71 0.00 45.74 2.41
1393 1422 2.093500 TGTAGCATGCGTCCTTCTCAAT 60.093 45.455 13.01 0.00 0.00 2.57
1426 1455 1.672030 CCAAGGCTCACATGACGCA 60.672 57.895 0.00 0.00 0.00 5.24
1432 1461 1.355381 TCAATCACCCAAGGCTCACAT 59.645 47.619 0.00 0.00 0.00 3.21
1477 1506 1.001974 AGTTGTACCTGATGAGCGCAA 59.998 47.619 11.47 0.00 0.00 4.85
1482 1511 2.654749 TGCGAGTTGTACCTGATGAG 57.345 50.000 0.00 0.00 0.00 2.90
1483 1512 2.760650 AGATGCGAGTTGTACCTGATGA 59.239 45.455 0.00 0.00 0.00 2.92
1501 1530 3.007398 AGCACAAAGAGGAAAGACGAGAT 59.993 43.478 0.00 0.00 0.00 2.75
1517 1546 2.827322 CCTCATTTTGGATCCAGCACAA 59.173 45.455 15.53 3.24 0.00 3.33
1582 1611 4.338118 CAGGAAGGTAACAAGAAGCAACAA 59.662 41.667 0.00 0.00 41.41 2.83
1594 1623 4.142038 ACAACCATGAACAGGAAGGTAAC 58.858 43.478 0.00 0.00 31.10 2.50
1639 1668 9.436957 GATGAACCTACATCTAAAGAAACTGAA 57.563 33.333 0.00 0.00 42.09 3.02
1675 1704 3.055747 CCTCTCCTTACTGTTGTCTTCCC 60.056 52.174 0.00 0.00 0.00 3.97
1696 1725 7.618502 TCTATTGTCGAGATAATAGCTCTCC 57.381 40.000 18.68 0.00 40.27 3.71
1712 1741 7.445707 ACCTTTTCTTCCTGAACTTCTATTGTC 59.554 37.037 0.00 0.00 33.88 3.18
1762 1791 5.883661 TGCATAAGATAGCAGAAAAAGTGC 58.116 37.500 0.00 0.00 41.54 4.40
1784 1813 7.275560 CCTTCTTGGAACTAACAAAACAAACTG 59.724 37.037 0.00 0.00 38.35 3.16
1830 1859 6.736794 GCAATATGAAGATCATTCCAACCACC 60.737 42.308 0.00 0.00 38.26 4.61
1859 1888 6.371548 TGAGCCACATACAAACTAATCACTTC 59.628 38.462 0.00 0.00 0.00 3.01
1952 1981 7.576236 ACGAAATTATTTCACAAGAGACTGTG 58.424 34.615 16.57 0.00 46.70 3.66
1953 1982 7.730364 ACGAAATTATTTCACAAGAGACTGT 57.270 32.000 16.57 1.20 39.63 3.55
1998 2027 1.138859 ACCTTGGTTCCAAGCAAAAGC 59.861 47.619 21.98 0.00 44.67 3.51
2002 2031 0.821711 CGGACCTTGGTTCCAAGCAA 60.822 55.000 21.98 7.60 43.36 3.91
2034 2063 2.094752 ACACCAAAACCATTATCGCTGC 60.095 45.455 0.00 0.00 0.00 5.25
2072 2101 3.079578 ACAAGAACTCATCATGCACCAG 58.920 45.455 0.00 0.00 29.77 4.00
2075 2104 2.163010 CCCACAAGAACTCATCATGCAC 59.837 50.000 0.00 0.00 29.77 4.57
2076 2105 2.439409 CCCACAAGAACTCATCATGCA 58.561 47.619 0.00 0.00 29.77 3.96
2077 2106 1.133790 GCCCACAAGAACTCATCATGC 59.866 52.381 0.00 0.00 29.77 4.06
2078 2107 2.163010 GTGCCCACAAGAACTCATCATG 59.837 50.000 0.00 0.00 33.00 3.07
2079 2108 2.224843 TGTGCCCACAAGAACTCATCAT 60.225 45.455 0.00 0.00 38.56 2.45
2080 2109 1.142667 TGTGCCCACAAGAACTCATCA 59.857 47.619 0.00 0.00 38.56 3.07
2081 2110 1.537202 GTGTGCCCACAAGAACTCATC 59.463 52.381 2.19 0.00 43.77 2.92
2082 2111 1.609208 GTGTGCCCACAAGAACTCAT 58.391 50.000 2.19 0.00 43.77 2.90
2083 2112 0.465460 GGTGTGCCCACAAGAACTCA 60.465 55.000 0.70 0.00 43.77 3.41
2084 2113 0.465460 TGGTGTGCCCACAAGAACTC 60.465 55.000 0.70 0.00 43.77 3.01
2085 2114 0.466189 CTGGTGTGCCCACAAGAACT 60.466 55.000 0.00 0.00 44.25 3.01
2086 2115 2.032981 CTGGTGTGCCCACAAGAAC 58.967 57.895 0.00 0.00 44.25 3.01
2087 2116 1.827789 GCTGGTGTGCCCACAAGAA 60.828 57.895 8.03 0.00 44.25 2.52
2088 2117 2.203337 GCTGGTGTGCCCACAAGA 60.203 61.111 8.03 0.00 44.25 3.02
2089 2118 2.203394 AGCTGGTGTGCCCACAAG 60.203 61.111 0.00 0.00 44.30 3.16
2090 2119 2.203337 GAGCTGGTGTGCCCACAA 60.203 61.111 0.70 0.00 43.77 3.33
2091 2120 2.356173 ATTGAGCTGGTGTGCCCACA 62.356 55.000 0.70 0.00 43.71 4.17
2092 2121 1.181098 AATTGAGCTGGTGTGCCCAC 61.181 55.000 0.00 0.00 38.72 4.61
2093 2122 0.469705 AAATTGAGCTGGTGTGCCCA 60.470 50.000 0.00 0.00 42.51 5.36
2171 2201 1.411246 TGAGCACTACAACACCGTTCT 59.589 47.619 0.00 0.00 0.00 3.01
2194 2224 3.627577 TGTTTGTCCTTTCTTGAGTGAGC 59.372 43.478 0.00 0.00 0.00 4.26
2279 2310 5.957798 ACAAGCAAATGTGAACATCCATAG 58.042 37.500 0.00 0.00 35.10 2.23
2281 2312 4.877378 ACAAGCAAATGTGAACATCCAT 57.123 36.364 0.00 0.00 35.10 3.41
2367 2398 3.246226 GCGTGTCTCTTACTTGCATATGG 59.754 47.826 4.56 0.00 0.00 2.74
2501 2533 5.726793 ACCTACAATACACCTCTTCCAGATT 59.273 40.000 0.00 0.00 0.00 2.40
2537 2569 5.220510 GCATTTGTTCGTATTACGTGGATGA 60.221 40.000 15.31 0.00 43.14 2.92
2544 2576 4.703424 TGTGTGCATTTGTTCGTATTACG 58.297 39.130 9.95 9.95 44.19 3.18
2567 2599 7.415592 TGAGATGTCAGATTCTTGACTACAT 57.584 36.000 13.66 0.00 46.00 2.29
2568 2600 6.840780 TGAGATGTCAGATTCTTGACTACA 57.159 37.500 13.66 0.00 46.00 2.74
2569 2601 8.539770 TTTTGAGATGTCAGATTCTTGACTAC 57.460 34.615 13.66 9.43 46.00 2.73
2573 2605 9.730705 ATAGTTTTTGAGATGTCAGATTCTTGA 57.269 29.630 0.00 0.00 32.98 3.02
2585 2617 7.092137 TCAATGGCTCATAGTTTTTGAGATG 57.908 36.000 4.93 0.00 42.63 2.90
2688 2733 0.038744 CAGTCCTTCAAGGGGCATGT 59.961 55.000 2.75 0.00 35.59 3.21
2697 2743 0.250467 GCACTCCTGCAGTCCTTCAA 60.250 55.000 13.81 0.00 43.62 2.69
2870 2916 4.307032 AATTTACCACACCTCAGCATCT 57.693 40.909 0.00 0.00 0.00 2.90
2893 2939 9.051259 ACCAGCTGATACATGTAGGATATAAAT 57.949 33.333 17.39 0.00 0.00 1.40
2910 2956 4.005650 CTGTCACACAATAACCAGCTGAT 58.994 43.478 17.39 6.23 0.00 2.90
2926 2972 0.321034 TCAGAGCATGCCACTGTCAC 60.321 55.000 28.91 9.03 33.93 3.67
3085 3132 4.327357 CGATCAAGTAAGTCGAAAGCACAT 59.673 41.667 0.00 0.00 37.55 3.21
3086 3133 3.673338 CGATCAAGTAAGTCGAAAGCACA 59.327 43.478 0.00 0.00 37.55 4.57
3417 3482 7.768120 TGACAATGTAAAGCAAAGAAAATTGGT 59.232 29.630 0.00 0.00 42.43 3.67
3535 3602 5.696724 TCTTTGCGGAAACAAAAACAAAAGA 59.303 32.000 0.00 0.00 38.96 2.52
3540 3607 4.748892 TCATCTTTGCGGAAACAAAAACA 58.251 34.783 0.00 0.00 38.96 2.83
3560 3627 6.091305 CGCACAGAGAACTGAATATCTTTTCA 59.909 38.462 0.00 0.00 46.03 2.69
3566 3633 5.105752 ACTTCGCACAGAGAACTGAATATC 58.894 41.667 0.00 0.00 46.03 1.63
3603 3671 7.232737 ACAAATTTAAAAGGAGGGACTGGTTAG 59.767 37.037 0.00 0.00 41.55 2.34
3872 3941 6.620877 TGTCTATGGTCAGGAAACATAACT 57.379 37.500 0.00 0.00 0.00 2.24
3999 4073 9.383519 GGAACATGTATAAGTCATGAAGAAAGA 57.616 33.333 0.00 0.00 43.47 2.52
4076 4150 6.147164 CCAGTTACATTGTGACGTTTGATAGT 59.853 38.462 6.11 0.00 0.00 2.12
4258 4332 7.394016 TCGTAATGCATCATCCCATAACTAAT 58.606 34.615 0.00 0.00 0.00 1.73
4296 4370 4.255301 TCAATATCGTTTACCGGCAAGTT 58.745 39.130 0.00 0.00 37.11 2.66
4338 4412 1.552348 CTTGCCCGAGATTCGATCGC 61.552 60.000 11.09 0.00 43.74 4.58
4516 4591 0.804933 GTTAAGCGTGCGGACCCTAG 60.805 60.000 0.00 0.00 0.00 3.02
4810 4952 1.293763 CCCCCACCCCTTATCCAATTT 59.706 52.381 0.00 0.00 0.00 1.82
4975 5142 0.402126 ATAAAGGAGGGGGAGGAGGC 60.402 60.000 0.00 0.00 0.00 4.70
5024 5198 3.343617 GCACAGGGCTAAGACAATGTTA 58.656 45.455 0.00 0.00 40.25 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.