Multiple sequence alignment - TraesCS4B01G306600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G306600 chr4B 100.000 2479 0 0 1 2479 595722794 595720316 0.000000e+00 4578.0
1 TraesCS4B01G306600 chr3B 98.728 2123 20 4 1 2118 7320724 7322844 0.000000e+00 3764.0
2 TraesCS4B01G306600 chr3B 91.398 93 8 0 2350 2442 150698942 150699034 7.200000e-26 128.0
3 TraesCS4B01G306600 chr3D 97.896 2091 36 5 1 2090 376076257 376074174 0.000000e+00 3611.0
4 TraesCS4B01G306600 chr3D 90.385 104 10 0 2350 2453 236630042 236629939 1.200000e-28 137.0
5 TraesCS4B01G306600 chr5A 96.868 2139 42 7 1 2120 115995524 115993392 0.000000e+00 3555.0
6 TraesCS4B01G306600 chr2B 96.885 2119 40 6 1 2118 33471871 33469778 0.000000e+00 3524.0
7 TraesCS4B01G306600 chr2B 94.383 1531 58 11 1 1508 796753313 796751788 0.000000e+00 2326.0
8 TraesCS4B01G306600 chr2B 87.313 134 13 2 2350 2479 156583484 156583617 1.540000e-32 150.0
9 TraesCS4B01G306600 chr6A 96.582 2136 51 7 3 2120 367764469 367762338 0.000000e+00 3520.0
10 TraesCS4B01G306600 chr5D 97.459 1810 39 6 311 2118 431175482 431173678 0.000000e+00 3081.0
11 TraesCS4B01G306600 chr5B 98.172 1751 24 5 372 2121 322285927 322284184 0.000000e+00 3049.0
12 TraesCS4B01G306600 chr5B 89.630 1813 136 34 84 1865 698015144 698013353 0.000000e+00 2259.0
13 TraesCS4B01G306600 chr2A 94.917 1200 38 14 467 1655 613239606 613238419 0.000000e+00 1857.0
14 TraesCS4B01G306600 chr2A 92.965 199 13 1 1591 1788 175032450 175032648 3.120000e-74 289.0
15 TraesCS4B01G306600 chr2A 85.393 89 8 3 2349 2435 282677238 282677153 1.220000e-13 87.9
16 TraesCS4B01G306600 chr2D 96.390 554 17 3 1569 2121 13511108 13510557 0.000000e+00 909.0
17 TraesCS4B01G306600 chr2D 89.109 101 11 0 2354 2454 542906289 542906389 2.590000e-25 126.0
18 TraesCS4B01G306600 chr2D 80.899 89 15 2 2344 2431 586159053 586159140 4.420000e-08 69.4
19 TraesCS4B01G306600 chr7B 93.750 368 18 5 1756 2118 33412024 33412391 4.660000e-152 547.0
20 TraesCS4B01G306600 chr4D 90.881 318 22 3 2163 2479 473173644 473173333 1.060000e-113 420.0
21 TraesCS4B01G306600 chr6B 87.619 105 13 0 2350 2454 387109140 387109244 3.350000e-24 122.0
22 TraesCS4B01G306600 chr4A 87.619 105 11 2 2350 2453 138798195 138798298 1.200000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G306600 chr4B 595720316 595722794 2478 True 4578 4578 100.000 1 2479 1 chr4B.!!$R1 2478
1 TraesCS4B01G306600 chr3B 7320724 7322844 2120 False 3764 3764 98.728 1 2118 1 chr3B.!!$F1 2117
2 TraesCS4B01G306600 chr3D 376074174 376076257 2083 True 3611 3611 97.896 1 2090 1 chr3D.!!$R2 2089
3 TraesCS4B01G306600 chr5A 115993392 115995524 2132 True 3555 3555 96.868 1 2120 1 chr5A.!!$R1 2119
4 TraesCS4B01G306600 chr2B 33469778 33471871 2093 True 3524 3524 96.885 1 2118 1 chr2B.!!$R1 2117
5 TraesCS4B01G306600 chr2B 796751788 796753313 1525 True 2326 2326 94.383 1 1508 1 chr2B.!!$R2 1507
6 TraesCS4B01G306600 chr6A 367762338 367764469 2131 True 3520 3520 96.582 3 2120 1 chr6A.!!$R1 2117
7 TraesCS4B01G306600 chr5D 431173678 431175482 1804 True 3081 3081 97.459 311 2118 1 chr5D.!!$R1 1807
8 TraesCS4B01G306600 chr5B 322284184 322285927 1743 True 3049 3049 98.172 372 2121 1 chr5B.!!$R1 1749
9 TraesCS4B01G306600 chr5B 698013353 698015144 1791 True 2259 2259 89.630 84 1865 1 chr5B.!!$R2 1781
10 TraesCS4B01G306600 chr2A 613238419 613239606 1187 True 1857 1857 94.917 467 1655 1 chr2A.!!$R2 1188
11 TraesCS4B01G306600 chr2D 13510557 13511108 551 True 909 909 96.390 1569 2121 1 chr2D.!!$R1 552

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
96 97 2.164219 CCAACGGCAACTGCATATCTTT 59.836 45.455 3.76 0.0 44.36 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1846 1953 5.045505 TGCAATTATCCCCTGTACAGTACAA 60.046 40.0 21.18 8.29 38.38 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 97 2.164219 CCAACGGCAACTGCATATCTTT 59.836 45.455 3.76 0.00 44.36 2.52
579 580 6.506500 ACTCCATTCACAAATTTAGAGCAG 57.493 37.500 0.00 0.00 0.00 4.24
580 581 5.105997 ACTCCATTCACAAATTTAGAGCAGC 60.106 40.000 0.00 0.00 0.00 5.25
1260 1292 8.571336 TGTCATGTATGTGTATGTCTAGATCAG 58.429 37.037 0.00 0.00 0.00 2.90
1666 1703 8.958119 TTTATGTGAACCTGGACTATTGTATC 57.042 34.615 0.00 0.00 0.00 2.24
1846 1953 7.656542 TCAATTGAAATTTGTGCATGTGTGTAT 59.343 29.630 5.45 0.00 0.00 2.29
2121 2231 5.451103 GGCCAAATAAGGAATTCTCTCTTGC 60.451 44.000 5.23 0.55 0.00 4.01
2122 2232 5.359292 GCCAAATAAGGAATTCTCTCTTGCT 59.641 40.000 5.23 0.00 0.00 3.91
2123 2233 6.459435 GCCAAATAAGGAATTCTCTCTTGCTC 60.459 42.308 5.23 0.00 0.00 4.26
2124 2234 6.600822 CCAAATAAGGAATTCTCTCTTGCTCA 59.399 38.462 5.23 0.00 0.00 4.26
2125 2235 7.284944 CCAAATAAGGAATTCTCTCTTGCTCAT 59.715 37.037 5.23 0.00 0.00 2.90
2126 2236 9.334947 CAAATAAGGAATTCTCTCTTGCTCATA 57.665 33.333 5.23 0.00 0.00 2.15
2127 2237 9.558396 AAATAAGGAATTCTCTCTTGCTCATAG 57.442 33.333 5.23 0.00 0.00 2.23
2128 2238 5.549742 AGGAATTCTCTCTTGCTCATAGG 57.450 43.478 5.23 0.00 0.00 2.57
2129 2239 4.347583 AGGAATTCTCTCTTGCTCATAGGG 59.652 45.833 5.23 0.00 0.00 3.53
2130 2240 4.102367 GGAATTCTCTCTTGCTCATAGGGT 59.898 45.833 5.23 0.00 0.00 4.34
2131 2241 5.305644 GGAATTCTCTCTTGCTCATAGGGTA 59.694 44.000 5.23 0.00 0.00 3.69
2132 2242 6.013812 GGAATTCTCTCTTGCTCATAGGGTAT 60.014 42.308 5.23 0.00 0.00 2.73
2133 2243 5.798125 TTCTCTCTTGCTCATAGGGTATG 57.202 43.478 0.00 0.00 37.52 2.39
2134 2244 4.155709 TCTCTCTTGCTCATAGGGTATGG 58.844 47.826 0.00 0.00 36.81 2.74
2135 2245 3.900601 CTCTCTTGCTCATAGGGTATGGT 59.099 47.826 0.00 0.00 36.81 3.55
2136 2246 4.298626 TCTCTTGCTCATAGGGTATGGTT 58.701 43.478 0.00 0.00 36.81 3.67
2137 2247 4.101585 TCTCTTGCTCATAGGGTATGGTTG 59.898 45.833 0.00 0.00 36.81 3.77
2138 2248 2.638480 TGCTCATAGGGTATGGTTGC 57.362 50.000 0.00 0.00 36.81 4.17
2139 2249 2.126882 TGCTCATAGGGTATGGTTGCT 58.873 47.619 0.00 0.00 36.81 3.91
2140 2250 2.158769 TGCTCATAGGGTATGGTTGCTG 60.159 50.000 0.00 0.00 36.81 4.41
2141 2251 2.811873 GCTCATAGGGTATGGTTGCTGG 60.812 54.545 0.00 0.00 36.81 4.85
2142 2252 2.439507 CTCATAGGGTATGGTTGCTGGT 59.560 50.000 0.00 0.00 36.81 4.00
2143 2253 2.172505 TCATAGGGTATGGTTGCTGGTG 59.827 50.000 0.00 0.00 36.81 4.17
2144 2254 0.254747 TAGGGTATGGTTGCTGGTGC 59.745 55.000 0.00 0.00 40.20 5.01
2145 2255 1.000896 GGGTATGGTTGCTGGTGCT 60.001 57.895 0.00 0.00 40.48 4.40
2146 2256 0.611896 GGGTATGGTTGCTGGTGCTT 60.612 55.000 0.00 0.00 40.48 3.91
2147 2257 1.340600 GGGTATGGTTGCTGGTGCTTA 60.341 52.381 0.00 0.00 40.48 3.09
2148 2258 1.743394 GGTATGGTTGCTGGTGCTTAC 59.257 52.381 0.00 0.00 40.48 2.34
2149 2259 2.432444 GTATGGTTGCTGGTGCTTACA 58.568 47.619 0.00 0.00 40.48 2.41
2150 2260 2.220653 ATGGTTGCTGGTGCTTACAT 57.779 45.000 0.00 0.00 40.48 2.29
2151 2261 1.533625 TGGTTGCTGGTGCTTACATC 58.466 50.000 0.00 0.00 40.48 3.06
2152 2262 1.202867 TGGTTGCTGGTGCTTACATCA 60.203 47.619 0.00 0.00 40.48 3.07
2153 2263 2.094675 GGTTGCTGGTGCTTACATCAT 58.905 47.619 0.00 0.00 36.00 2.45
2154 2264 2.493278 GGTTGCTGGTGCTTACATCATT 59.507 45.455 0.00 0.00 36.00 2.57
2155 2265 3.056607 GGTTGCTGGTGCTTACATCATTT 60.057 43.478 0.00 0.00 36.00 2.32
2156 2266 3.853831 TGCTGGTGCTTACATCATTTG 57.146 42.857 0.00 0.00 36.00 2.32
2157 2267 2.492881 TGCTGGTGCTTACATCATTTGG 59.507 45.455 0.00 0.00 36.00 3.28
2158 2268 2.736400 GCTGGTGCTTACATCATTTGGC 60.736 50.000 0.00 0.00 36.00 4.52
2159 2269 1.824230 TGGTGCTTACATCATTTGGCC 59.176 47.619 0.00 0.00 29.79 5.36
2160 2270 2.102578 GGTGCTTACATCATTTGGCCT 58.897 47.619 3.32 0.00 0.00 5.19
2161 2271 2.159198 GGTGCTTACATCATTTGGCCTG 60.159 50.000 3.32 0.00 0.00 4.85
2162 2272 2.101783 TGCTTACATCATTTGGCCTGG 58.898 47.619 3.32 0.00 0.00 4.45
2163 2273 1.410153 GCTTACATCATTTGGCCTGGG 59.590 52.381 3.32 0.00 0.00 4.45
2164 2274 2.738743 CTTACATCATTTGGCCTGGGT 58.261 47.619 3.32 0.00 0.00 4.51
2165 2275 3.897239 CTTACATCATTTGGCCTGGGTA 58.103 45.455 3.32 0.00 0.00 3.69
2166 2276 4.473444 CTTACATCATTTGGCCTGGGTAT 58.527 43.478 3.32 0.00 0.00 2.73
2167 2277 2.949447 ACATCATTTGGCCTGGGTATC 58.051 47.619 3.32 0.00 0.00 2.24
2168 2278 2.244510 ACATCATTTGGCCTGGGTATCA 59.755 45.455 3.32 0.00 0.00 2.15
2169 2279 2.734755 TCATTTGGCCTGGGTATCAG 57.265 50.000 3.32 0.00 43.00 2.90
2170 2280 1.922447 TCATTTGGCCTGGGTATCAGT 59.078 47.619 3.32 0.00 41.83 3.41
2171 2281 2.092429 TCATTTGGCCTGGGTATCAGTC 60.092 50.000 3.32 0.00 41.83 3.51
2172 2282 1.367346 TTTGGCCTGGGTATCAGTCA 58.633 50.000 3.32 0.00 41.83 3.41
2173 2283 1.367346 TTGGCCTGGGTATCAGTCAA 58.633 50.000 3.32 0.00 41.83 3.18
2174 2284 1.367346 TGGCCTGGGTATCAGTCAAA 58.633 50.000 3.32 0.00 41.83 2.69
2175 2285 1.922447 TGGCCTGGGTATCAGTCAAAT 59.078 47.619 3.32 0.00 41.83 2.32
2176 2286 2.301346 GGCCTGGGTATCAGTCAAATG 58.699 52.381 0.00 0.00 41.83 2.32
2177 2287 2.301346 GCCTGGGTATCAGTCAAATGG 58.699 52.381 0.00 0.00 41.83 3.16
2178 2288 2.357154 GCCTGGGTATCAGTCAAATGGT 60.357 50.000 0.00 0.00 41.83 3.55
2179 2289 3.877735 GCCTGGGTATCAGTCAAATGGTT 60.878 47.826 0.00 0.00 41.83 3.67
2180 2290 4.627741 GCCTGGGTATCAGTCAAATGGTTA 60.628 45.833 0.00 0.00 41.83 2.85
2181 2291 4.881850 CCTGGGTATCAGTCAAATGGTTAC 59.118 45.833 0.00 0.00 41.83 2.50
2182 2292 5.496556 CTGGGTATCAGTCAAATGGTTACA 58.503 41.667 0.00 0.00 38.64 2.41
2183 2293 5.882040 TGGGTATCAGTCAAATGGTTACAA 58.118 37.500 0.00 0.00 0.00 2.41
2184 2294 6.489603 TGGGTATCAGTCAAATGGTTACAAT 58.510 36.000 0.00 0.00 0.00 2.71
2185 2295 7.634718 TGGGTATCAGTCAAATGGTTACAATA 58.365 34.615 0.00 0.00 0.00 1.90
2186 2296 8.110271 TGGGTATCAGTCAAATGGTTACAATAA 58.890 33.333 0.00 0.00 0.00 1.40
2187 2297 8.621286 GGGTATCAGTCAAATGGTTACAATAAG 58.379 37.037 0.00 0.00 0.00 1.73
2188 2298 9.174166 GGTATCAGTCAAATGGTTACAATAAGT 57.826 33.333 0.00 0.00 0.00 2.24
2191 2301 9.912634 ATCAGTCAAATGGTTACAATAAGTTTG 57.087 29.630 0.00 0.00 0.00 2.93
2192 2302 8.908903 TCAGTCAAATGGTTACAATAAGTTTGT 58.091 29.630 0.00 0.00 36.49 2.83
2193 2303 9.180678 CAGTCAAATGGTTACAATAAGTTTGTC 57.819 33.333 0.00 0.00 34.11 3.18
2194 2304 8.073768 AGTCAAATGGTTACAATAAGTTTGTCG 58.926 33.333 0.00 0.00 34.11 4.35
2195 2305 7.858879 GTCAAATGGTTACAATAAGTTTGTCGT 59.141 33.333 0.00 0.00 34.11 4.34
2196 2306 9.053840 TCAAATGGTTACAATAAGTTTGTCGTA 57.946 29.630 0.00 0.00 34.11 3.43
2197 2307 9.666626 CAAATGGTTACAATAAGTTTGTCGTAA 57.333 29.630 0.00 0.00 34.11 3.18
2198 2308 9.887406 AAATGGTTACAATAAGTTTGTCGTAAG 57.113 29.630 0.00 0.00 34.11 2.34
2199 2309 6.890558 TGGTTACAATAAGTTTGTCGTAAGC 58.109 36.000 0.00 0.00 37.66 3.09
2200 2310 6.482641 TGGTTACAATAAGTTTGTCGTAAGCA 59.517 34.615 0.00 0.00 42.00 3.91
2201 2311 7.012138 TGGTTACAATAAGTTTGTCGTAAGCAA 59.988 33.333 8.92 0.00 41.58 3.91
2202 2312 7.321984 GGTTACAATAAGTTTGTCGTAAGCAAC 59.678 37.037 0.00 0.00 37.31 4.17
2203 2313 6.613755 ACAATAAGTTTGTCGTAAGCAACT 57.386 33.333 0.00 0.00 34.13 3.16
2204 2314 6.656003 ACAATAAGTTTGTCGTAAGCAACTC 58.344 36.000 0.00 0.00 34.13 3.01
2205 2315 6.259167 ACAATAAGTTTGTCGTAAGCAACTCA 59.741 34.615 0.00 0.00 34.13 3.41
2206 2316 6.854496 ATAAGTTTGTCGTAAGCAACTCAA 57.146 33.333 0.00 0.00 34.13 3.02
2207 2317 5.751243 AAGTTTGTCGTAAGCAACTCAAT 57.249 34.783 0.00 0.00 34.13 2.57
2208 2318 5.095691 AGTTTGTCGTAAGCAACTCAATG 57.904 39.130 0.00 0.00 34.13 2.82
2209 2319 3.536158 TTGTCGTAAGCAACTCAATGC 57.464 42.857 0.00 0.00 46.78 3.56
2221 2331 6.006759 GCAACTCAATGCTCTTATAATCCC 57.993 41.667 0.00 0.00 43.06 3.85
2222 2332 5.532406 GCAACTCAATGCTCTTATAATCCCA 59.468 40.000 0.00 0.00 43.06 4.37
2223 2333 6.514048 GCAACTCAATGCTCTTATAATCCCAC 60.514 42.308 0.00 0.00 43.06 4.61
2224 2334 5.625150 ACTCAATGCTCTTATAATCCCACC 58.375 41.667 0.00 0.00 0.00 4.61
2225 2335 5.132648 ACTCAATGCTCTTATAATCCCACCA 59.867 40.000 0.00 0.00 0.00 4.17
2226 2336 5.376625 TCAATGCTCTTATAATCCCACCAC 58.623 41.667 0.00 0.00 0.00 4.16
2227 2337 3.469008 TGCTCTTATAATCCCACCACG 57.531 47.619 0.00 0.00 0.00 4.94
2228 2338 2.143925 GCTCTTATAATCCCACCACGC 58.856 52.381 0.00 0.00 0.00 5.34
2229 2339 2.484770 GCTCTTATAATCCCACCACGCA 60.485 50.000 0.00 0.00 0.00 5.24
2230 2340 3.807209 GCTCTTATAATCCCACCACGCAT 60.807 47.826 0.00 0.00 0.00 4.73
2231 2341 4.562757 GCTCTTATAATCCCACCACGCATA 60.563 45.833 0.00 0.00 0.00 3.14
2232 2342 5.147330 TCTTATAATCCCACCACGCATAG 57.853 43.478 0.00 0.00 0.00 2.23
2233 2343 2.859165 ATAATCCCACCACGCATAGG 57.141 50.000 0.00 0.00 0.00 2.57
2234 2344 1.796017 TAATCCCACCACGCATAGGA 58.204 50.000 0.00 0.00 0.00 2.94
2235 2345 1.140312 AATCCCACCACGCATAGGAT 58.860 50.000 0.00 0.00 39.02 3.24
2236 2346 2.024176 ATCCCACCACGCATAGGATA 57.976 50.000 0.00 0.00 35.56 2.59
2237 2347 2.024176 TCCCACCACGCATAGGATAT 57.976 50.000 0.00 0.00 0.00 1.63
2238 2348 1.623311 TCCCACCACGCATAGGATATG 59.377 52.381 0.00 0.00 0.00 1.78
2239 2349 1.339055 CCCACCACGCATAGGATATGG 60.339 57.143 0.00 0.00 36.46 2.74
2240 2350 1.347707 CCACCACGCATAGGATATGGT 59.652 52.381 0.00 0.00 44.58 3.55
2241 2351 2.565391 CCACCACGCATAGGATATGGTA 59.435 50.000 0.00 0.00 41.79 3.25
2242 2352 3.007506 CCACCACGCATAGGATATGGTAA 59.992 47.826 0.00 0.00 41.79 2.85
2243 2353 4.245660 CACCACGCATAGGATATGGTAAG 58.754 47.826 0.00 0.00 41.79 2.34
2244 2354 4.021456 CACCACGCATAGGATATGGTAAGA 60.021 45.833 0.00 0.00 41.79 2.10
2245 2355 4.777896 ACCACGCATAGGATATGGTAAGAT 59.222 41.667 0.00 0.00 41.90 2.40
2246 2356 5.955959 ACCACGCATAGGATATGGTAAGATA 59.044 40.000 0.00 0.00 41.90 1.98
2247 2357 6.096987 ACCACGCATAGGATATGGTAAGATAG 59.903 42.308 0.00 0.00 41.90 2.08
2248 2358 6.321435 CCACGCATAGGATATGGTAAGATAGA 59.679 42.308 0.00 0.00 0.00 1.98
2249 2359 7.147897 CCACGCATAGGATATGGTAAGATAGAA 60.148 40.741 0.00 0.00 0.00 2.10
2250 2360 8.251026 CACGCATAGGATATGGTAAGATAGAAA 58.749 37.037 0.00 0.00 0.00 2.52
2251 2361 8.982723 ACGCATAGGATATGGTAAGATAGAAAT 58.017 33.333 0.00 0.00 0.00 2.17
2252 2362 9.469807 CGCATAGGATATGGTAAGATAGAAATC 57.530 37.037 0.00 0.00 0.00 2.17
2253 2363 9.469807 GCATAGGATATGGTAAGATAGAAATCG 57.530 37.037 0.00 0.00 37.19 3.34
2254 2364 9.973450 CATAGGATATGGTAAGATAGAAATCGG 57.027 37.037 0.00 0.00 37.19 4.18
2255 2365 7.425224 AGGATATGGTAAGATAGAAATCGGG 57.575 40.000 0.00 0.00 37.19 5.14
2256 2366 7.189794 AGGATATGGTAAGATAGAAATCGGGA 58.810 38.462 0.00 0.00 37.19 5.14
2257 2367 7.124448 AGGATATGGTAAGATAGAAATCGGGAC 59.876 40.741 0.00 0.00 37.19 4.46
2258 2368 7.093465 GGATATGGTAAGATAGAAATCGGGACA 60.093 40.741 0.00 0.00 37.19 4.02
2259 2369 5.272283 TGGTAAGATAGAAATCGGGACAC 57.728 43.478 0.00 0.00 37.19 3.67
2260 2370 4.100498 TGGTAAGATAGAAATCGGGACACC 59.900 45.833 0.00 0.00 37.19 4.16
2261 2371 4.344390 GGTAAGATAGAAATCGGGACACCT 59.656 45.833 0.00 0.00 37.19 4.00
2262 2372 5.163332 GGTAAGATAGAAATCGGGACACCTT 60.163 44.000 0.00 0.00 37.19 3.50
2263 2373 5.437191 AAGATAGAAATCGGGACACCTTT 57.563 39.130 0.00 0.00 37.19 3.11
2264 2374 4.770795 AGATAGAAATCGGGACACCTTTG 58.229 43.478 0.00 0.00 37.19 2.77
2265 2375 4.469945 AGATAGAAATCGGGACACCTTTGA 59.530 41.667 0.00 0.00 37.19 2.69
2266 2376 2.779506 AGAAATCGGGACACCTTTGAC 58.220 47.619 0.00 0.00 33.28 3.18
2267 2377 2.105821 AGAAATCGGGACACCTTTGACA 59.894 45.455 0.00 0.00 33.28 3.58
2268 2378 2.649531 AATCGGGACACCTTTGACAA 57.350 45.000 0.00 0.00 33.28 3.18
2269 2379 1.892209 ATCGGGACACCTTTGACAAC 58.108 50.000 0.00 0.00 33.28 3.32
2270 2380 0.542333 TCGGGACACCTTTGACAACA 59.458 50.000 0.00 0.00 33.28 3.33
2271 2381 1.142060 TCGGGACACCTTTGACAACAT 59.858 47.619 0.00 0.00 33.28 2.71
2272 2382 1.953686 CGGGACACCTTTGACAACATT 59.046 47.619 0.00 0.00 33.28 2.71
2273 2383 2.360801 CGGGACACCTTTGACAACATTT 59.639 45.455 0.00 0.00 33.28 2.32
2274 2384 3.550030 CGGGACACCTTTGACAACATTTC 60.550 47.826 0.00 0.00 33.28 2.17
2275 2385 3.636764 GGGACACCTTTGACAACATTTCT 59.363 43.478 0.00 0.00 0.00 2.52
2276 2386 4.099419 GGGACACCTTTGACAACATTTCTT 59.901 41.667 0.00 0.00 0.00 2.52
2277 2387 5.281727 GGACACCTTTGACAACATTTCTTC 58.718 41.667 0.00 0.00 0.00 2.87
2278 2388 5.262588 ACACCTTTGACAACATTTCTTCC 57.737 39.130 0.00 0.00 0.00 3.46
2279 2389 4.956075 ACACCTTTGACAACATTTCTTCCT 59.044 37.500 0.00 0.00 0.00 3.36
2280 2390 5.067805 ACACCTTTGACAACATTTCTTCCTC 59.932 40.000 0.00 0.00 0.00 3.71
2281 2391 5.300286 CACCTTTGACAACATTTCTTCCTCT 59.700 40.000 0.00 0.00 0.00 3.69
2282 2392 5.300286 ACCTTTGACAACATTTCTTCCTCTG 59.700 40.000 0.00 0.00 0.00 3.35
2283 2393 5.532406 CCTTTGACAACATTTCTTCCTCTGA 59.468 40.000 0.00 0.00 0.00 3.27
2284 2394 6.039717 CCTTTGACAACATTTCTTCCTCTGAA 59.960 38.462 0.00 0.00 0.00 3.02
2286 2396 4.516698 TGACAACATTTCTTCCTCTGAAGC 59.483 41.667 0.00 0.00 46.28 3.86
2287 2397 4.464008 ACAACATTTCTTCCTCTGAAGCA 58.536 39.130 0.00 0.00 46.28 3.91
2288 2398 4.276926 ACAACATTTCTTCCTCTGAAGCAC 59.723 41.667 0.00 0.00 46.28 4.40
2289 2399 4.363991 ACATTTCTTCCTCTGAAGCACT 57.636 40.909 0.00 0.00 46.28 4.40
2290 2400 5.489792 ACATTTCTTCCTCTGAAGCACTA 57.510 39.130 0.00 0.00 46.28 2.74
2291 2401 5.869579 ACATTTCTTCCTCTGAAGCACTAA 58.130 37.500 0.00 0.00 46.28 2.24
2292 2402 6.479884 ACATTTCTTCCTCTGAAGCACTAAT 58.520 36.000 0.00 0.00 46.28 1.73
2293 2403 6.944862 ACATTTCTTCCTCTGAAGCACTAATT 59.055 34.615 0.00 0.00 46.28 1.40
2294 2404 7.120432 ACATTTCTTCCTCTGAAGCACTAATTC 59.880 37.037 0.00 0.00 46.28 2.17
2295 2405 4.748892 TCTTCCTCTGAAGCACTAATTCG 58.251 43.478 0.00 0.00 46.28 3.34
2296 2406 4.220821 TCTTCCTCTGAAGCACTAATTCGT 59.779 41.667 0.00 0.00 46.28 3.85
2297 2407 3.849911 TCCTCTGAAGCACTAATTCGTG 58.150 45.455 5.76 5.76 37.94 4.35
2298 2408 2.932614 CCTCTGAAGCACTAATTCGTGG 59.067 50.000 11.64 0.00 35.47 4.94
2299 2409 2.346803 TCTGAAGCACTAATTCGTGGC 58.653 47.619 11.64 4.74 35.47 5.01
2300 2410 2.076100 CTGAAGCACTAATTCGTGGCA 58.924 47.619 11.64 0.00 35.47 4.92
2301 2411 2.679837 CTGAAGCACTAATTCGTGGCAT 59.320 45.455 11.64 0.00 35.47 4.40
2302 2412 3.081061 TGAAGCACTAATTCGTGGCATT 58.919 40.909 11.64 2.29 35.47 3.56
2303 2413 3.126858 TGAAGCACTAATTCGTGGCATTC 59.873 43.478 11.64 9.41 35.47 2.67
2304 2414 1.665679 AGCACTAATTCGTGGCATTCG 59.334 47.619 11.64 0.00 35.47 3.34
2305 2415 1.856014 GCACTAATTCGTGGCATTCGC 60.856 52.381 11.64 0.00 35.47 4.70
2306 2416 1.665679 CACTAATTCGTGGCATTCGCT 59.334 47.619 2.21 0.00 38.60 4.93
2307 2417 2.095853 CACTAATTCGTGGCATTCGCTT 59.904 45.455 2.21 0.00 38.60 4.68
2308 2418 2.747446 ACTAATTCGTGGCATTCGCTTT 59.253 40.909 0.00 0.00 38.60 3.51
2309 2419 1.981254 AATTCGTGGCATTCGCTTTG 58.019 45.000 0.00 0.00 38.60 2.77
2310 2420 1.164411 ATTCGTGGCATTCGCTTTGA 58.836 45.000 0.00 0.00 38.60 2.69
2311 2421 0.516877 TTCGTGGCATTCGCTTTGAG 59.483 50.000 0.00 0.00 38.60 3.02
2312 2422 0.602638 TCGTGGCATTCGCTTTGAGT 60.603 50.000 0.00 0.00 38.60 3.41
2313 2423 0.453282 CGTGGCATTCGCTTTGAGTG 60.453 55.000 0.00 0.00 37.38 3.51
2314 2424 0.109597 GTGGCATTCGCTTTGAGTGG 60.110 55.000 0.00 0.00 35.03 4.00
2315 2425 0.250684 TGGCATTCGCTTTGAGTGGA 60.251 50.000 0.00 0.00 35.03 4.02
2316 2426 0.449388 GGCATTCGCTTTGAGTGGAG 59.551 55.000 0.00 0.00 35.03 3.86
2317 2427 0.449388 GCATTCGCTTTGAGTGGAGG 59.551 55.000 0.00 0.00 35.03 4.30
2318 2428 1.813513 CATTCGCTTTGAGTGGAGGT 58.186 50.000 0.00 0.00 31.07 3.85
2319 2429 2.154462 CATTCGCTTTGAGTGGAGGTT 58.846 47.619 0.00 0.00 31.07 3.50
2320 2430 1.593196 TTCGCTTTGAGTGGAGGTTG 58.407 50.000 0.00 0.00 0.00 3.77
2321 2431 0.468226 TCGCTTTGAGTGGAGGTTGT 59.532 50.000 0.00 0.00 0.00 3.32
2322 2432 0.588252 CGCTTTGAGTGGAGGTTGTG 59.412 55.000 0.00 0.00 0.00 3.33
2323 2433 0.954452 GCTTTGAGTGGAGGTTGTGG 59.046 55.000 0.00 0.00 0.00 4.17
2324 2434 1.476833 GCTTTGAGTGGAGGTTGTGGA 60.477 52.381 0.00 0.00 0.00 4.02
2325 2435 2.222027 CTTTGAGTGGAGGTTGTGGAC 58.778 52.381 0.00 0.00 0.00 4.02
2326 2436 1.208706 TTGAGTGGAGGTTGTGGACA 58.791 50.000 0.00 0.00 0.00 4.02
2327 2437 0.468226 TGAGTGGAGGTTGTGGACAC 59.532 55.000 0.00 0.00 0.00 3.67
2328 2438 0.759346 GAGTGGAGGTTGTGGACACT 59.241 55.000 3.91 0.00 44.34 3.55
2329 2439 0.469917 AGTGGAGGTTGTGGACACTG 59.530 55.000 3.91 0.00 40.56 3.66
2330 2440 0.535102 GTGGAGGTTGTGGACACTGG 60.535 60.000 3.91 0.00 0.00 4.00
2331 2441 1.600916 GGAGGTTGTGGACACTGGC 60.601 63.158 3.91 0.00 0.00 4.85
2332 2442 1.451936 GAGGTTGTGGACACTGGCT 59.548 57.895 3.91 0.00 0.00 4.75
2333 2443 0.179018 GAGGTTGTGGACACTGGCTT 60.179 55.000 3.91 0.00 0.00 4.35
2334 2444 1.071699 GAGGTTGTGGACACTGGCTTA 59.928 52.381 3.91 0.00 0.00 3.09
2335 2445 1.493022 AGGTTGTGGACACTGGCTTAA 59.507 47.619 3.91 0.00 0.00 1.85
2336 2446 2.092103 AGGTTGTGGACACTGGCTTAAA 60.092 45.455 3.91 0.00 0.00 1.52
2337 2447 2.890945 GGTTGTGGACACTGGCTTAAAT 59.109 45.455 3.91 0.00 0.00 1.40
2338 2448 3.305335 GGTTGTGGACACTGGCTTAAATG 60.305 47.826 3.91 0.00 0.00 2.32
2339 2449 3.222173 TGTGGACACTGGCTTAAATGT 57.778 42.857 3.91 0.00 0.00 2.71
2340 2450 4.359434 TGTGGACACTGGCTTAAATGTA 57.641 40.909 3.91 0.00 0.00 2.29
2341 2451 4.323417 TGTGGACACTGGCTTAAATGTAG 58.677 43.478 3.91 0.00 0.00 2.74
2342 2452 3.689649 GTGGACACTGGCTTAAATGTAGG 59.310 47.826 0.00 0.00 0.00 3.18
2343 2453 3.585289 TGGACACTGGCTTAAATGTAGGA 59.415 43.478 0.00 0.00 0.00 2.94
2344 2454 3.939592 GGACACTGGCTTAAATGTAGGAC 59.060 47.826 0.00 0.00 0.00 3.85
2345 2455 4.564821 GGACACTGGCTTAAATGTAGGACA 60.565 45.833 0.00 0.00 0.00 4.02
2346 2456 4.980573 ACACTGGCTTAAATGTAGGACAA 58.019 39.130 0.00 0.00 0.00 3.18
2347 2457 5.381757 ACACTGGCTTAAATGTAGGACAAA 58.618 37.500 0.00 0.00 0.00 2.83
2348 2458 5.473504 ACACTGGCTTAAATGTAGGACAAAG 59.526 40.000 0.00 0.00 0.00 2.77
2349 2459 5.473504 CACTGGCTTAAATGTAGGACAAAGT 59.526 40.000 0.00 0.00 0.00 2.66
2350 2460 5.473504 ACTGGCTTAAATGTAGGACAAAGTG 59.526 40.000 0.00 0.00 0.00 3.16
2351 2461 5.381757 TGGCTTAAATGTAGGACAAAGTGT 58.618 37.500 0.00 0.00 0.00 3.55
2352 2462 5.472137 TGGCTTAAATGTAGGACAAAGTGTC 59.528 40.000 0.00 0.00 46.23 3.67
2365 2475 6.535274 GACAAAGTGTCGGTGTACTAAATT 57.465 37.500 0.00 0.00 37.67 1.82
2366 2476 7.642071 GACAAAGTGTCGGTGTACTAAATTA 57.358 36.000 0.00 0.00 37.67 1.40
2367 2477 7.647907 ACAAAGTGTCGGTGTACTAAATTAG 57.352 36.000 0.00 0.00 0.00 1.73
2368 2478 6.647895 ACAAAGTGTCGGTGTACTAAATTAGG 59.352 38.462 4.92 0.00 0.00 2.69
2369 2479 5.334724 AGTGTCGGTGTACTAAATTAGGG 57.665 43.478 4.92 0.00 0.00 3.53
2370 2480 4.161001 AGTGTCGGTGTACTAAATTAGGGG 59.839 45.833 4.92 0.00 0.00 4.79
2371 2481 4.081476 GTGTCGGTGTACTAAATTAGGGGT 60.081 45.833 4.92 0.00 0.00 4.95
2372 2482 4.160252 TGTCGGTGTACTAAATTAGGGGTC 59.840 45.833 4.92 0.00 0.00 4.46
2373 2483 3.706086 TCGGTGTACTAAATTAGGGGTCC 59.294 47.826 4.92 1.69 0.00 4.46
2374 2484 3.708121 CGGTGTACTAAATTAGGGGTCCT 59.292 47.826 4.92 0.00 37.71 3.85
2375 2485 4.202192 CGGTGTACTAAATTAGGGGTCCTC 60.202 50.000 4.92 0.00 34.61 3.71
2376 2486 4.967442 GGTGTACTAAATTAGGGGTCCTCT 59.033 45.833 4.92 0.00 34.61 3.69
2377 2487 6.138967 GGTGTACTAAATTAGGGGTCCTCTA 58.861 44.000 4.92 0.00 34.61 2.43
2378 2488 6.267242 GGTGTACTAAATTAGGGGTCCTCTAG 59.733 46.154 4.92 0.00 34.61 2.43
2379 2489 6.838090 GTGTACTAAATTAGGGGTCCTCTAGT 59.162 42.308 4.92 0.00 34.61 2.57
2380 2490 8.001292 GTGTACTAAATTAGGGGTCCTCTAGTA 58.999 40.741 4.92 0.00 34.61 1.82
2381 2491 8.001292 TGTACTAAATTAGGGGTCCTCTAGTAC 58.999 40.741 17.10 17.10 34.61 2.73
2382 2492 6.380414 ACTAAATTAGGGGTCCTCTAGTACC 58.620 44.000 4.92 3.87 34.61 3.34
2388 2498 2.070305 GGTCCTCTAGTACCCCAGAC 57.930 60.000 0.00 0.00 0.00 3.51
2389 2499 1.570024 GGTCCTCTAGTACCCCAGACT 59.430 57.143 0.00 0.00 0.00 3.24
2390 2500 2.024177 GGTCCTCTAGTACCCCAGACTT 60.024 54.545 0.00 0.00 0.00 3.01
2391 2501 3.025262 GTCCTCTAGTACCCCAGACTTG 58.975 54.545 0.00 0.00 0.00 3.16
2392 2502 2.653366 TCCTCTAGTACCCCAGACTTGT 59.347 50.000 0.00 0.00 0.00 3.16
2393 2503 2.761208 CCTCTAGTACCCCAGACTTGTG 59.239 54.545 0.00 0.00 0.00 3.33
2394 2504 2.166664 CTCTAGTACCCCAGACTTGTGC 59.833 54.545 0.00 0.00 0.00 4.57
2395 2505 1.899814 CTAGTACCCCAGACTTGTGCA 59.100 52.381 0.00 0.00 0.00 4.57
2396 2506 0.396811 AGTACCCCAGACTTGTGCAC 59.603 55.000 10.75 10.75 0.00 4.57
2397 2507 0.107831 GTACCCCAGACTTGTGCACA 59.892 55.000 17.42 17.42 0.00 4.57
2398 2508 0.396435 TACCCCAGACTTGTGCACAG 59.604 55.000 20.59 16.04 0.00 3.66
2399 2509 1.601759 CCCCAGACTTGTGCACAGG 60.602 63.158 25.77 25.77 0.00 4.00
2400 2510 2.263741 CCCAGACTTGTGCACAGGC 61.264 63.158 27.10 19.37 41.68 4.85
2417 2527 1.486211 GGCAGTTGTAGCCCTCTAGA 58.514 55.000 0.00 0.00 46.50 2.43
2418 2528 1.137282 GGCAGTTGTAGCCCTCTAGAC 59.863 57.143 0.00 0.00 46.50 2.59
2419 2529 1.202313 GCAGTTGTAGCCCTCTAGACG 60.202 57.143 0.00 0.00 0.00 4.18
2420 2530 2.366533 CAGTTGTAGCCCTCTAGACGA 58.633 52.381 0.00 0.00 0.00 4.20
2421 2531 2.097791 CAGTTGTAGCCCTCTAGACGAC 59.902 54.545 0.00 0.00 0.00 4.34
2422 2532 2.089980 GTTGTAGCCCTCTAGACGACA 58.910 52.381 0.00 0.00 0.00 4.35
2423 2533 2.490903 GTTGTAGCCCTCTAGACGACAA 59.509 50.000 4.19 4.19 0.00 3.18
2424 2534 2.366533 TGTAGCCCTCTAGACGACAAG 58.633 52.381 0.00 0.00 0.00 3.16
2425 2535 1.677052 GTAGCCCTCTAGACGACAAGG 59.323 57.143 0.00 0.00 0.00 3.61
2427 2537 1.817209 CCCTCTAGACGACAAGGGC 59.183 63.158 6.99 0.00 41.98 5.19
2428 2538 0.684805 CCCTCTAGACGACAAGGGCT 60.685 60.000 6.99 0.00 41.98 5.19
2429 2539 1.187087 CCTCTAGACGACAAGGGCTT 58.813 55.000 0.00 0.00 0.00 4.35
2430 2540 1.134965 CCTCTAGACGACAAGGGCTTG 60.135 57.143 0.00 0.00 45.58 4.01
2431 2541 0.246635 TCTAGACGACAAGGGCTTGC 59.753 55.000 0.00 0.00 44.03 4.01
2432 2542 0.247736 CTAGACGACAAGGGCTTGCT 59.752 55.000 0.00 0.00 44.03 3.91
2433 2543 0.037326 TAGACGACAAGGGCTTGCTG 60.037 55.000 0.00 0.00 44.03 4.41
2434 2544 2.281761 ACGACAAGGGCTTGCTGG 60.282 61.111 0.00 0.00 44.03 4.85
2435 2545 2.032528 CGACAAGGGCTTGCTGGA 59.967 61.111 0.00 0.00 44.03 3.86
2436 2546 1.600636 CGACAAGGGCTTGCTGGAA 60.601 57.895 0.00 0.00 44.03 3.53
2437 2547 1.580845 CGACAAGGGCTTGCTGGAAG 61.581 60.000 4.37 4.37 44.03 3.46
2438 2548 0.250901 GACAAGGGCTTGCTGGAAGA 60.251 55.000 13.43 0.00 44.03 2.87
2439 2549 0.407139 ACAAGGGCTTGCTGGAAGAT 59.593 50.000 13.43 0.00 44.03 2.40
2440 2550 1.635487 ACAAGGGCTTGCTGGAAGATA 59.365 47.619 13.43 0.00 44.03 1.98
2441 2551 2.295885 CAAGGGCTTGCTGGAAGATAG 58.704 52.381 13.43 0.00 34.07 2.08
2442 2552 0.182299 AGGGCTTGCTGGAAGATAGC 59.818 55.000 13.43 0.00 40.01 2.97
2443 2553 0.182299 GGGCTTGCTGGAAGATAGCT 59.818 55.000 13.43 0.00 40.40 3.32
2444 2554 1.592064 GGCTTGCTGGAAGATAGCTC 58.408 55.000 13.43 0.00 40.40 4.09
2445 2555 1.140652 GGCTTGCTGGAAGATAGCTCT 59.859 52.381 13.43 0.00 40.40 4.09
2446 2556 2.366916 GGCTTGCTGGAAGATAGCTCTA 59.633 50.000 13.43 0.00 40.40 2.43
2447 2557 3.389221 GCTTGCTGGAAGATAGCTCTAC 58.611 50.000 13.43 0.00 41.66 2.59
2448 2558 3.801983 GCTTGCTGGAAGATAGCTCTACC 60.802 52.174 13.43 0.00 41.66 3.18
2449 2559 2.320781 TGCTGGAAGATAGCTCTACCC 58.679 52.381 0.00 0.00 41.66 3.69
2450 2560 2.320781 GCTGGAAGATAGCTCTACCCA 58.679 52.381 0.00 0.00 38.14 4.51
2451 2561 2.700897 GCTGGAAGATAGCTCTACCCAA 59.299 50.000 0.00 0.00 35.31 4.12
2452 2562 3.244044 GCTGGAAGATAGCTCTACCCAAG 60.244 52.174 0.00 0.00 35.31 3.61
2453 2563 4.219115 CTGGAAGATAGCTCTACCCAAGA 58.781 47.826 0.00 0.00 35.31 3.02
2454 2564 4.820775 TGGAAGATAGCTCTACCCAAGAT 58.179 43.478 0.00 0.00 33.76 2.40
2455 2565 4.835615 TGGAAGATAGCTCTACCCAAGATC 59.164 45.833 0.00 0.00 33.76 2.75
2456 2566 4.221924 GGAAGATAGCTCTACCCAAGATCC 59.778 50.000 0.00 0.00 32.41 3.36
2457 2567 4.477536 AGATAGCTCTACCCAAGATCCA 57.522 45.455 0.00 0.00 32.41 3.41
2458 2568 4.820775 AGATAGCTCTACCCAAGATCCAA 58.179 43.478 0.00 0.00 32.41 3.53
2459 2569 4.837860 AGATAGCTCTACCCAAGATCCAAG 59.162 45.833 0.00 0.00 32.41 3.61
2460 2570 2.122768 AGCTCTACCCAAGATCCAAGG 58.877 52.381 0.00 0.00 32.41 3.61
2461 2571 1.840635 GCTCTACCCAAGATCCAAGGT 59.159 52.381 3.85 3.85 32.41 3.50
2462 2572 2.239907 GCTCTACCCAAGATCCAAGGTT 59.760 50.000 3.70 0.00 32.41 3.50
2463 2573 3.308473 GCTCTACCCAAGATCCAAGGTTT 60.308 47.826 3.70 0.00 32.41 3.27
2464 2574 4.265073 CTCTACCCAAGATCCAAGGTTTG 58.735 47.826 3.70 0.00 32.41 2.93
2477 2587 4.490743 CCAAGGTTTGGTTATTTAAGCCG 58.509 43.478 0.00 0.00 45.93 5.52
2478 2588 4.021807 CCAAGGTTTGGTTATTTAAGCCGT 60.022 41.667 0.00 0.00 45.93 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 97 1.136828 AACCTAGTGTGCCACTTCCA 58.863 50.000 12.22 0.00 42.59 3.53
579 580 2.548480 GGGATTAGTTGGTCATAAGCGC 59.452 50.000 0.00 0.00 0.00 5.92
580 581 3.809832 CAGGGATTAGTTGGTCATAAGCG 59.190 47.826 0.00 0.00 0.00 4.68
793 794 1.670811 GCAATGTCATCTGGGTTACCG 59.329 52.381 0.00 0.00 40.75 4.02
1061 1066 6.203530 TGAGAAGAATGCACTTAGAACACAAG 59.796 38.462 0.00 0.00 0.00 3.16
1846 1953 5.045505 TGCAATTATCCCCTGTACAGTACAA 60.046 40.000 21.18 8.29 38.38 2.41
2121 2231 2.439507 ACCAGCAACCATACCCTATGAG 59.560 50.000 0.00 0.00 38.45 2.90
2122 2232 2.172505 CACCAGCAACCATACCCTATGA 59.827 50.000 0.00 0.00 38.45 2.15
2123 2233 2.575532 CACCAGCAACCATACCCTATG 58.424 52.381 0.00 0.00 35.94 2.23
2124 2234 1.133792 GCACCAGCAACCATACCCTAT 60.134 52.381 0.00 0.00 41.58 2.57
2125 2235 0.254747 GCACCAGCAACCATACCCTA 59.745 55.000 0.00 0.00 41.58 3.53
2126 2236 1.000896 GCACCAGCAACCATACCCT 60.001 57.895 0.00 0.00 41.58 4.34
2127 2237 0.611896 AAGCACCAGCAACCATACCC 60.612 55.000 0.00 0.00 45.49 3.69
2128 2238 1.743394 GTAAGCACCAGCAACCATACC 59.257 52.381 0.00 0.00 45.49 2.73
2129 2239 2.432444 TGTAAGCACCAGCAACCATAC 58.568 47.619 0.00 0.00 45.49 2.39
2130 2240 2.869101 TGTAAGCACCAGCAACCATA 57.131 45.000 0.00 0.00 45.49 2.74
2131 2241 2.094675 GATGTAAGCACCAGCAACCAT 58.905 47.619 0.00 0.00 45.49 3.55
2132 2242 1.202867 TGATGTAAGCACCAGCAACCA 60.203 47.619 0.00 0.00 45.49 3.67
2133 2243 1.533625 TGATGTAAGCACCAGCAACC 58.466 50.000 0.00 0.00 45.49 3.77
2134 2244 3.855689 AATGATGTAAGCACCAGCAAC 57.144 42.857 0.00 0.00 45.49 4.17
2135 2245 3.056678 CCAAATGATGTAAGCACCAGCAA 60.057 43.478 0.00 0.00 45.49 3.91
2136 2246 2.492881 CCAAATGATGTAAGCACCAGCA 59.507 45.455 0.00 0.00 45.49 4.41
2137 2247 2.736400 GCCAAATGATGTAAGCACCAGC 60.736 50.000 0.00 0.00 30.93 4.85
2138 2248 2.159198 GGCCAAATGATGTAAGCACCAG 60.159 50.000 0.00 0.00 30.93 4.00
2139 2249 1.824230 GGCCAAATGATGTAAGCACCA 59.176 47.619 0.00 0.00 30.93 4.17
2140 2250 2.102578 AGGCCAAATGATGTAAGCACC 58.897 47.619 5.01 0.00 30.93 5.01
2141 2251 2.159198 CCAGGCCAAATGATGTAAGCAC 60.159 50.000 5.01 0.00 30.93 4.40
2142 2252 2.101783 CCAGGCCAAATGATGTAAGCA 58.898 47.619 5.01 0.00 35.55 3.91
2143 2253 1.410153 CCCAGGCCAAATGATGTAAGC 59.590 52.381 5.01 0.00 0.00 3.09
2144 2254 2.738743 ACCCAGGCCAAATGATGTAAG 58.261 47.619 5.01 0.00 0.00 2.34
2145 2255 2.917713 ACCCAGGCCAAATGATGTAA 57.082 45.000 5.01 0.00 0.00 2.41
2146 2256 3.461458 TGATACCCAGGCCAAATGATGTA 59.539 43.478 5.01 0.53 0.00 2.29
2147 2257 2.244510 TGATACCCAGGCCAAATGATGT 59.755 45.455 5.01 0.00 0.00 3.06
2148 2258 2.889045 CTGATACCCAGGCCAAATGATG 59.111 50.000 5.01 0.00 39.23 3.07
2149 2259 3.234234 CTGATACCCAGGCCAAATGAT 57.766 47.619 5.01 0.00 39.23 2.45
2150 2260 2.092429 GACTGATACCCAGGCCAAATGA 60.092 50.000 5.01 0.00 45.42 2.57
2151 2261 2.301346 GACTGATACCCAGGCCAAATG 58.699 52.381 5.01 0.00 45.42 2.32
2152 2262 2.736670 GACTGATACCCAGGCCAAAT 57.263 50.000 5.01 0.00 45.42 2.32
2160 2270 5.506730 TGTAACCATTTGACTGATACCCA 57.493 39.130 0.00 0.00 0.00 4.51
2161 2271 8.514330 TTATTGTAACCATTTGACTGATACCC 57.486 34.615 0.00 0.00 0.00 3.69
2162 2272 9.174166 ACTTATTGTAACCATTTGACTGATACC 57.826 33.333 0.00 0.00 0.00 2.73
2165 2275 9.912634 CAAACTTATTGTAACCATTTGACTGAT 57.087 29.630 0.00 0.00 0.00 2.90
2166 2276 8.908903 ACAAACTTATTGTAACCATTTGACTGA 58.091 29.630 0.00 0.00 31.59 3.41
2167 2277 9.180678 GACAAACTTATTGTAACCATTTGACTG 57.819 33.333 0.00 0.00 31.96 3.51
2168 2278 8.073768 CGACAAACTTATTGTAACCATTTGACT 58.926 33.333 0.00 0.00 31.96 3.41
2169 2279 7.858879 ACGACAAACTTATTGTAACCATTTGAC 59.141 33.333 0.00 0.00 31.96 3.18
2170 2280 7.932335 ACGACAAACTTATTGTAACCATTTGA 58.068 30.769 0.00 0.00 31.96 2.69
2171 2281 9.666626 TTACGACAAACTTATTGTAACCATTTG 57.333 29.630 0.00 0.00 31.96 2.32
2172 2282 9.887406 CTTACGACAAACTTATTGTAACCATTT 57.113 29.630 0.00 0.00 31.96 2.32
2173 2283 8.019094 GCTTACGACAAACTTATTGTAACCATT 58.981 33.333 0.00 0.00 31.96 3.16
2174 2284 7.173562 TGCTTACGACAAACTTATTGTAACCAT 59.826 33.333 0.00 0.00 31.96 3.55
2175 2285 6.482641 TGCTTACGACAAACTTATTGTAACCA 59.517 34.615 0.00 0.00 31.96 3.67
2176 2286 6.890558 TGCTTACGACAAACTTATTGTAACC 58.109 36.000 0.00 0.00 31.96 2.85
2177 2287 8.066000 AGTTGCTTACGACAAACTTATTGTAAC 58.934 33.333 0.00 0.00 31.96 2.50
2178 2288 8.145316 AGTTGCTTACGACAAACTTATTGTAA 57.855 30.769 0.00 0.00 31.96 2.41
2179 2289 7.438757 TGAGTTGCTTACGACAAACTTATTGTA 59.561 33.333 0.00 0.00 31.96 2.41
2180 2290 6.259167 TGAGTTGCTTACGACAAACTTATTGT 59.741 34.615 0.00 0.00 34.97 2.71
2181 2291 6.655062 TGAGTTGCTTACGACAAACTTATTG 58.345 36.000 0.00 0.00 31.96 1.90
2182 2292 6.854496 TGAGTTGCTTACGACAAACTTATT 57.146 33.333 0.00 0.00 31.96 1.40
2183 2293 6.854496 TTGAGTTGCTTACGACAAACTTAT 57.146 33.333 0.00 0.00 31.96 1.73
2184 2294 6.655062 CATTGAGTTGCTTACGACAAACTTA 58.345 36.000 0.00 0.00 33.98 2.24
2185 2295 5.510671 CATTGAGTTGCTTACGACAAACTT 58.489 37.500 0.00 0.00 33.98 2.66
2186 2296 4.554723 GCATTGAGTTGCTTACGACAAACT 60.555 41.667 0.00 0.00 39.57 2.66
2187 2297 3.664025 GCATTGAGTTGCTTACGACAAAC 59.336 43.478 0.00 0.00 39.57 2.93
2188 2298 3.884169 GCATTGAGTTGCTTACGACAAA 58.116 40.909 0.00 0.00 39.57 2.83
2189 2299 3.536158 GCATTGAGTTGCTTACGACAA 57.464 42.857 0.00 0.00 39.57 3.18
2198 2308 5.532406 TGGGATTATAAGAGCATTGAGTTGC 59.468 40.000 0.00 0.00 43.09 4.17
2199 2309 6.016777 GGTGGGATTATAAGAGCATTGAGTTG 60.017 42.308 0.00 0.00 0.00 3.16
2200 2310 6.064717 GGTGGGATTATAAGAGCATTGAGTT 58.935 40.000 0.00 0.00 0.00 3.01
2201 2311 5.132648 TGGTGGGATTATAAGAGCATTGAGT 59.867 40.000 0.00 0.00 0.00 3.41
2202 2312 5.471456 GTGGTGGGATTATAAGAGCATTGAG 59.529 44.000 0.00 0.00 0.00 3.02
2203 2313 5.376625 GTGGTGGGATTATAAGAGCATTGA 58.623 41.667 0.00 0.00 0.00 2.57
2204 2314 4.214119 CGTGGTGGGATTATAAGAGCATTG 59.786 45.833 0.00 0.00 0.00 2.82
2205 2315 4.389374 CGTGGTGGGATTATAAGAGCATT 58.611 43.478 0.00 0.00 0.00 3.56
2206 2316 3.807209 GCGTGGTGGGATTATAAGAGCAT 60.807 47.826 0.00 0.00 0.00 3.79
2207 2317 2.484770 GCGTGGTGGGATTATAAGAGCA 60.485 50.000 0.00 0.00 0.00 4.26
2208 2318 2.143925 GCGTGGTGGGATTATAAGAGC 58.856 52.381 0.00 0.00 0.00 4.09
2209 2319 3.469008 TGCGTGGTGGGATTATAAGAG 57.531 47.619 0.00 0.00 0.00 2.85
2210 2320 4.020573 CCTATGCGTGGTGGGATTATAAGA 60.021 45.833 0.00 0.00 0.00 2.10
2211 2321 4.020573 TCCTATGCGTGGTGGGATTATAAG 60.021 45.833 0.00 0.00 0.00 1.73
2212 2322 3.904965 TCCTATGCGTGGTGGGATTATAA 59.095 43.478 0.00 0.00 0.00 0.98
2213 2323 3.512496 TCCTATGCGTGGTGGGATTATA 58.488 45.455 0.00 0.00 0.00 0.98
2214 2324 2.334977 TCCTATGCGTGGTGGGATTAT 58.665 47.619 0.00 0.00 0.00 1.28
2215 2325 1.796017 TCCTATGCGTGGTGGGATTA 58.204 50.000 0.00 0.00 0.00 1.75
2216 2326 1.140312 ATCCTATGCGTGGTGGGATT 58.860 50.000 0.00 0.00 33.55 3.01
2217 2327 2.024176 TATCCTATGCGTGGTGGGAT 57.976 50.000 0.00 0.00 39.68 3.85
2218 2328 1.623311 CATATCCTATGCGTGGTGGGA 59.377 52.381 0.00 0.00 0.00 4.37
2219 2329 1.339055 CCATATCCTATGCGTGGTGGG 60.339 57.143 0.00 0.00 0.00 4.61
2220 2330 1.347707 ACCATATCCTATGCGTGGTGG 59.652 52.381 0.00 0.00 41.38 4.61
2221 2331 2.839486 ACCATATCCTATGCGTGGTG 57.161 50.000 0.00 0.00 41.38 4.17
2222 2332 4.157246 TCTTACCATATCCTATGCGTGGT 58.843 43.478 0.00 0.00 44.75 4.16
2223 2333 4.801330 TCTTACCATATCCTATGCGTGG 57.199 45.455 0.00 0.00 36.06 4.94
2224 2334 7.334844 TCTATCTTACCATATCCTATGCGTG 57.665 40.000 0.00 0.00 0.00 5.34
2225 2335 7.956328 TTCTATCTTACCATATCCTATGCGT 57.044 36.000 0.00 0.00 0.00 5.24
2226 2336 9.469807 GATTTCTATCTTACCATATCCTATGCG 57.530 37.037 0.00 0.00 0.00 4.73
2227 2337 9.469807 CGATTTCTATCTTACCATATCCTATGC 57.530 37.037 0.00 0.00 0.00 3.14
2228 2338 9.973450 CCGATTTCTATCTTACCATATCCTATG 57.027 37.037 0.00 0.00 0.00 2.23
2229 2339 9.148879 CCCGATTTCTATCTTACCATATCCTAT 57.851 37.037 0.00 0.00 0.00 2.57
2230 2340 8.341513 TCCCGATTTCTATCTTACCATATCCTA 58.658 37.037 0.00 0.00 0.00 2.94
2231 2341 7.124448 GTCCCGATTTCTATCTTACCATATCCT 59.876 40.741 0.00 0.00 0.00 3.24
2232 2342 7.093465 TGTCCCGATTTCTATCTTACCATATCC 60.093 40.741 0.00 0.00 0.00 2.59
2233 2343 7.760340 GTGTCCCGATTTCTATCTTACCATATC 59.240 40.741 0.00 0.00 0.00 1.63
2234 2344 7.310485 GGTGTCCCGATTTCTATCTTACCATAT 60.310 40.741 0.00 0.00 0.00 1.78
2235 2345 6.014840 GGTGTCCCGATTTCTATCTTACCATA 60.015 42.308 0.00 0.00 0.00 2.74
2236 2346 5.221661 GGTGTCCCGATTTCTATCTTACCAT 60.222 44.000 0.00 0.00 0.00 3.55
2237 2347 4.100498 GGTGTCCCGATTTCTATCTTACCA 59.900 45.833 0.00 0.00 0.00 3.25
2238 2348 4.344390 AGGTGTCCCGATTTCTATCTTACC 59.656 45.833 0.00 0.00 35.12 2.85
2239 2349 5.532664 AGGTGTCCCGATTTCTATCTTAC 57.467 43.478 0.00 0.00 35.12 2.34
2240 2350 6.155565 TCAAAGGTGTCCCGATTTCTATCTTA 59.844 38.462 0.00 0.00 35.12 2.10
2241 2351 5.045869 TCAAAGGTGTCCCGATTTCTATCTT 60.046 40.000 0.00 0.00 35.12 2.40
2242 2352 4.469945 TCAAAGGTGTCCCGATTTCTATCT 59.530 41.667 0.00 0.00 35.12 1.98
2243 2353 4.571176 GTCAAAGGTGTCCCGATTTCTATC 59.429 45.833 0.00 0.00 35.12 2.08
2244 2354 4.019681 TGTCAAAGGTGTCCCGATTTCTAT 60.020 41.667 0.00 0.00 35.12 1.98
2245 2355 3.325425 TGTCAAAGGTGTCCCGATTTCTA 59.675 43.478 0.00 0.00 35.12 2.10
2246 2356 2.105821 TGTCAAAGGTGTCCCGATTTCT 59.894 45.455 0.00 0.00 35.12 2.52
2247 2357 2.500229 TGTCAAAGGTGTCCCGATTTC 58.500 47.619 0.00 0.00 35.12 2.17
2248 2358 2.621526 GTTGTCAAAGGTGTCCCGATTT 59.378 45.455 0.00 0.00 35.12 2.17
2249 2359 2.227194 GTTGTCAAAGGTGTCCCGATT 58.773 47.619 0.00 0.00 35.12 3.34
2250 2360 1.142060 TGTTGTCAAAGGTGTCCCGAT 59.858 47.619 0.00 0.00 35.12 4.18
2251 2361 0.542333 TGTTGTCAAAGGTGTCCCGA 59.458 50.000 0.00 0.00 35.12 5.14
2252 2362 1.604604 ATGTTGTCAAAGGTGTCCCG 58.395 50.000 0.00 0.00 35.12 5.14
2253 2363 3.636764 AGAAATGTTGTCAAAGGTGTCCC 59.363 43.478 0.00 0.00 0.00 4.46
2254 2364 4.918810 AGAAATGTTGTCAAAGGTGTCC 57.081 40.909 0.00 0.00 0.00 4.02
2255 2365 5.067805 AGGAAGAAATGTTGTCAAAGGTGTC 59.932 40.000 0.00 0.00 0.00 3.67
2256 2366 4.956075 AGGAAGAAATGTTGTCAAAGGTGT 59.044 37.500 0.00 0.00 0.00 4.16
2257 2367 5.300286 AGAGGAAGAAATGTTGTCAAAGGTG 59.700 40.000 0.00 0.00 0.00 4.00
2258 2368 5.300286 CAGAGGAAGAAATGTTGTCAAAGGT 59.700 40.000 0.00 0.00 0.00 3.50
2259 2369 5.532406 TCAGAGGAAGAAATGTTGTCAAAGG 59.468 40.000 0.00 0.00 0.00 3.11
2260 2370 6.624352 TCAGAGGAAGAAATGTTGTCAAAG 57.376 37.500 0.00 0.00 0.00 2.77
2275 2385 4.245660 CACGAATTAGTGCTTCAGAGGAA 58.754 43.478 5.73 0.00 35.17 3.36
2276 2386 3.368427 CCACGAATTAGTGCTTCAGAGGA 60.368 47.826 12.73 0.00 40.59 3.71
2277 2387 2.932614 CCACGAATTAGTGCTTCAGAGG 59.067 50.000 12.73 0.00 40.59 3.69
2278 2388 2.349886 GCCACGAATTAGTGCTTCAGAG 59.650 50.000 12.73 0.00 40.59 3.35
2279 2389 2.289382 TGCCACGAATTAGTGCTTCAGA 60.289 45.455 12.73 0.00 40.59 3.27
2280 2390 2.076100 TGCCACGAATTAGTGCTTCAG 58.924 47.619 12.73 1.06 40.59 3.02
2281 2391 2.177394 TGCCACGAATTAGTGCTTCA 57.823 45.000 12.73 7.56 40.59 3.02
2282 2392 3.685058 GAATGCCACGAATTAGTGCTTC 58.315 45.455 12.73 10.73 40.59 3.86
2283 2393 2.095853 CGAATGCCACGAATTAGTGCTT 59.904 45.455 12.73 6.22 40.59 3.91
2284 2394 1.665679 CGAATGCCACGAATTAGTGCT 59.334 47.619 12.73 0.00 40.59 4.40
2285 2395 1.856014 GCGAATGCCACGAATTAGTGC 60.856 52.381 12.73 9.09 40.59 4.40
2286 2396 1.665679 AGCGAATGCCACGAATTAGTG 59.334 47.619 11.38 11.38 44.31 2.74
2287 2397 2.024176 AGCGAATGCCACGAATTAGT 57.976 45.000 0.00 0.00 44.31 2.24
2288 2398 3.100817 CAAAGCGAATGCCACGAATTAG 58.899 45.455 0.00 0.00 44.31 1.73
2289 2399 2.744741 TCAAAGCGAATGCCACGAATTA 59.255 40.909 0.00 0.00 44.31 1.40
2290 2400 1.539388 TCAAAGCGAATGCCACGAATT 59.461 42.857 0.00 0.00 44.31 2.17
2291 2401 1.131126 CTCAAAGCGAATGCCACGAAT 59.869 47.619 0.00 0.00 44.31 3.34
2292 2402 0.516877 CTCAAAGCGAATGCCACGAA 59.483 50.000 0.00 0.00 44.31 3.85
2293 2403 0.602638 ACTCAAAGCGAATGCCACGA 60.603 50.000 0.00 0.00 44.31 4.35
2294 2404 0.453282 CACTCAAAGCGAATGCCACG 60.453 55.000 0.00 0.00 44.31 4.94
2295 2405 0.109597 CCACTCAAAGCGAATGCCAC 60.110 55.000 0.00 0.00 44.31 5.01
2296 2406 0.250684 TCCACTCAAAGCGAATGCCA 60.251 50.000 0.00 0.00 44.31 4.92
2297 2407 0.449388 CTCCACTCAAAGCGAATGCC 59.551 55.000 0.00 0.00 44.31 4.40
2298 2408 0.449388 CCTCCACTCAAAGCGAATGC 59.551 55.000 0.00 0.00 43.24 3.56
2299 2409 1.813513 ACCTCCACTCAAAGCGAATG 58.186 50.000 0.00 0.00 0.00 2.67
2300 2410 2.154462 CAACCTCCACTCAAAGCGAAT 58.846 47.619 0.00 0.00 0.00 3.34
2301 2411 1.134220 ACAACCTCCACTCAAAGCGAA 60.134 47.619 0.00 0.00 0.00 4.70
2302 2412 0.468226 ACAACCTCCACTCAAAGCGA 59.532 50.000 0.00 0.00 0.00 4.93
2303 2413 0.588252 CACAACCTCCACTCAAAGCG 59.412 55.000 0.00 0.00 0.00 4.68
2304 2414 0.954452 CCACAACCTCCACTCAAAGC 59.046 55.000 0.00 0.00 0.00 3.51
2305 2415 2.222027 GTCCACAACCTCCACTCAAAG 58.778 52.381 0.00 0.00 0.00 2.77
2306 2416 1.562008 TGTCCACAACCTCCACTCAAA 59.438 47.619 0.00 0.00 0.00 2.69
2307 2417 1.134220 GTGTCCACAACCTCCACTCAA 60.134 52.381 0.00 0.00 0.00 3.02
2308 2418 0.468226 GTGTCCACAACCTCCACTCA 59.532 55.000 0.00 0.00 0.00 3.41
2309 2419 0.759346 AGTGTCCACAACCTCCACTC 59.241 55.000 0.00 0.00 30.94 3.51
2310 2420 0.469917 CAGTGTCCACAACCTCCACT 59.530 55.000 0.00 0.00 36.85 4.00
2311 2421 0.535102 CCAGTGTCCACAACCTCCAC 60.535 60.000 0.00 0.00 0.00 4.02
2312 2422 1.836391 CCAGTGTCCACAACCTCCA 59.164 57.895 0.00 0.00 0.00 3.86
2313 2423 1.600916 GCCAGTGTCCACAACCTCC 60.601 63.158 0.00 0.00 0.00 4.30
2314 2424 0.179018 AAGCCAGTGTCCACAACCTC 60.179 55.000 0.00 0.00 0.00 3.85
2315 2425 1.136828 TAAGCCAGTGTCCACAACCT 58.863 50.000 0.00 0.00 0.00 3.50
2316 2426 1.975660 TTAAGCCAGTGTCCACAACC 58.024 50.000 0.00 0.00 0.00 3.77
2317 2427 3.317993 ACATTTAAGCCAGTGTCCACAAC 59.682 43.478 0.00 0.00 0.00 3.32
2318 2428 3.561143 ACATTTAAGCCAGTGTCCACAA 58.439 40.909 0.00 0.00 0.00 3.33
2319 2429 3.222173 ACATTTAAGCCAGTGTCCACA 57.778 42.857 0.00 0.00 0.00 4.17
2320 2430 3.689649 CCTACATTTAAGCCAGTGTCCAC 59.310 47.826 0.00 0.00 0.00 4.02
2321 2431 3.585289 TCCTACATTTAAGCCAGTGTCCA 59.415 43.478 0.00 0.00 0.00 4.02
2322 2432 3.939592 GTCCTACATTTAAGCCAGTGTCC 59.060 47.826 0.00 0.00 0.00 4.02
2323 2433 4.575885 TGTCCTACATTTAAGCCAGTGTC 58.424 43.478 0.00 0.00 0.00 3.67
2324 2434 4.634012 TGTCCTACATTTAAGCCAGTGT 57.366 40.909 0.00 0.00 0.00 3.55
2325 2435 5.473504 ACTTTGTCCTACATTTAAGCCAGTG 59.526 40.000 0.00 0.00 0.00 3.66
2326 2436 5.473504 CACTTTGTCCTACATTTAAGCCAGT 59.526 40.000 0.00 0.00 0.00 4.00
2327 2437 5.473504 ACACTTTGTCCTACATTTAAGCCAG 59.526 40.000 0.00 0.00 0.00 4.85
2328 2438 5.381757 ACACTTTGTCCTACATTTAAGCCA 58.618 37.500 0.00 0.00 0.00 4.75
2329 2439 5.390567 CGACACTTTGTCCTACATTTAAGCC 60.391 44.000 0.76 0.00 44.20 4.35
2330 2440 5.390567 CCGACACTTTGTCCTACATTTAAGC 60.391 44.000 0.76 0.00 44.20 3.09
2331 2441 5.699458 ACCGACACTTTGTCCTACATTTAAG 59.301 40.000 0.76 0.00 44.20 1.85
2332 2442 5.467399 CACCGACACTTTGTCCTACATTTAA 59.533 40.000 0.76 0.00 44.20 1.52
2333 2443 4.992319 CACCGACACTTTGTCCTACATTTA 59.008 41.667 0.76 0.00 44.20 1.40
2334 2444 3.813166 CACCGACACTTTGTCCTACATTT 59.187 43.478 0.76 0.00 44.20 2.32
2335 2445 3.181458 ACACCGACACTTTGTCCTACATT 60.181 43.478 0.76 0.00 44.20 2.71
2336 2446 2.367567 ACACCGACACTTTGTCCTACAT 59.632 45.455 0.76 0.00 44.20 2.29
2337 2447 1.758280 ACACCGACACTTTGTCCTACA 59.242 47.619 0.76 0.00 44.20 2.74
2338 2448 2.521105 ACACCGACACTTTGTCCTAC 57.479 50.000 0.76 0.00 44.20 3.18
2339 2449 3.225104 AGTACACCGACACTTTGTCCTA 58.775 45.455 0.00 0.00 44.20 2.94
2340 2450 2.037144 AGTACACCGACACTTTGTCCT 58.963 47.619 0.00 0.00 44.20 3.85
2341 2451 2.521105 AGTACACCGACACTTTGTCC 57.479 50.000 0.00 0.00 44.20 4.02
2342 2452 6.535274 AATTTAGTACACCGACACTTTGTC 57.465 37.500 0.00 0.00 43.65 3.18
2343 2453 6.647895 CCTAATTTAGTACACCGACACTTTGT 59.352 38.462 0.00 0.00 0.00 2.83
2344 2454 6.091713 CCCTAATTTAGTACACCGACACTTTG 59.908 42.308 0.00 0.00 0.00 2.77
2345 2455 6.168389 CCCTAATTTAGTACACCGACACTTT 58.832 40.000 0.00 0.00 0.00 2.66
2346 2456 5.337813 CCCCTAATTTAGTACACCGACACTT 60.338 44.000 0.00 0.00 0.00 3.16
2347 2457 4.161001 CCCCTAATTTAGTACACCGACACT 59.839 45.833 0.00 0.00 0.00 3.55
2348 2458 4.081476 ACCCCTAATTTAGTACACCGACAC 60.081 45.833 0.00 0.00 0.00 3.67
2349 2459 4.095946 ACCCCTAATTTAGTACACCGACA 58.904 43.478 0.00 0.00 0.00 4.35
2350 2460 4.442052 GGACCCCTAATTTAGTACACCGAC 60.442 50.000 0.00 0.00 0.00 4.79
2351 2461 3.706086 GGACCCCTAATTTAGTACACCGA 59.294 47.826 0.00 0.00 0.00 4.69
2352 2462 3.708121 AGGACCCCTAATTTAGTACACCG 59.292 47.826 0.00 0.00 28.47 4.94
2353 2463 4.967442 AGAGGACCCCTAATTTAGTACACC 59.033 45.833 0.00 2.01 31.76 4.16
2354 2464 6.838090 ACTAGAGGACCCCTAATTTAGTACAC 59.162 42.308 0.00 0.00 31.76 2.90
2355 2465 6.989894 ACTAGAGGACCCCTAATTTAGTACA 58.010 40.000 0.00 0.00 31.76 2.90
2356 2466 7.450014 GGTACTAGAGGACCCCTAATTTAGTAC 59.550 44.444 17.30 17.30 38.05 2.73
2357 2467 7.530435 GGTACTAGAGGACCCCTAATTTAGTA 58.470 42.308 0.00 0.00 31.76 1.82
2358 2468 6.380414 GGTACTAGAGGACCCCTAATTTAGT 58.620 44.000 0.00 0.00 31.76 2.24
2359 2469 6.914654 GGTACTAGAGGACCCCTAATTTAG 57.085 45.833 0.00 0.00 31.76 1.85
2369 2479 1.570024 AGTCTGGGGTACTAGAGGACC 59.430 57.143 1.85 1.85 34.75 4.46
2370 2480 3.025262 CAAGTCTGGGGTACTAGAGGAC 58.975 54.545 0.00 0.00 0.00 3.85
2371 2481 2.653366 ACAAGTCTGGGGTACTAGAGGA 59.347 50.000 0.00 0.00 0.00 3.71
2372 2482 2.761208 CACAAGTCTGGGGTACTAGAGG 59.239 54.545 0.00 0.00 0.00 3.69
2373 2483 2.166664 GCACAAGTCTGGGGTACTAGAG 59.833 54.545 0.00 0.00 0.00 2.43
2374 2484 2.176889 GCACAAGTCTGGGGTACTAGA 58.823 52.381 0.00 0.00 0.00 2.43
2375 2485 1.899814 TGCACAAGTCTGGGGTACTAG 59.100 52.381 0.00 0.00 0.00 2.57
2376 2486 1.621814 GTGCACAAGTCTGGGGTACTA 59.378 52.381 13.17 0.00 0.00 1.82
2377 2487 0.396811 GTGCACAAGTCTGGGGTACT 59.603 55.000 13.17 0.00 0.00 2.73
2378 2488 0.107831 TGTGCACAAGTCTGGGGTAC 59.892 55.000 19.28 0.00 0.00 3.34
2379 2489 0.396435 CTGTGCACAAGTCTGGGGTA 59.604 55.000 21.98 0.00 0.00 3.69
2380 2490 1.149174 CTGTGCACAAGTCTGGGGT 59.851 57.895 21.98 0.00 0.00 4.95
2381 2491 1.601759 CCTGTGCACAAGTCTGGGG 60.602 63.158 21.98 12.72 0.00 4.96
2382 2492 2.263741 GCCTGTGCACAAGTCTGGG 61.264 63.158 21.98 17.77 37.47 4.45
2383 2493 1.512996 CTGCCTGTGCACAAGTCTGG 61.513 60.000 21.98 18.51 44.23 3.86
2384 2494 0.816825 ACTGCCTGTGCACAAGTCTG 60.817 55.000 21.98 16.91 44.23 3.51
2385 2495 0.107017 AACTGCCTGTGCACAAGTCT 60.107 50.000 21.98 9.43 44.23 3.24
2386 2496 0.029834 CAACTGCCTGTGCACAAGTC 59.970 55.000 21.98 12.74 44.23 3.01
2387 2497 0.680921 ACAACTGCCTGTGCACAAGT 60.681 50.000 21.98 18.31 44.23 3.16
2388 2498 1.265095 CTACAACTGCCTGTGCACAAG 59.735 52.381 21.98 16.53 44.23 3.16
2389 2499 1.308047 CTACAACTGCCTGTGCACAA 58.692 50.000 21.98 5.14 44.23 3.33
2390 2500 1.165907 GCTACAACTGCCTGTGCACA 61.166 55.000 20.37 20.37 44.23 4.57
2391 2501 1.576421 GCTACAACTGCCTGTGCAC 59.424 57.895 10.75 10.75 44.23 4.57
2393 2503 3.267974 GGCTACAACTGCCTGTGC 58.732 61.111 0.00 0.00 46.38 4.57
2399 2509 1.202313 CGTCTAGAGGGCTACAACTGC 60.202 57.143 4.45 0.00 0.00 4.40
2400 2510 2.097791 GTCGTCTAGAGGGCTACAACTG 59.902 54.545 9.75 0.00 0.00 3.16
2401 2511 2.290768 TGTCGTCTAGAGGGCTACAACT 60.291 50.000 17.22 0.00 0.00 3.16
2402 2512 2.089980 TGTCGTCTAGAGGGCTACAAC 58.910 52.381 17.22 5.81 0.00 3.32
2403 2513 2.502142 TGTCGTCTAGAGGGCTACAA 57.498 50.000 17.22 0.00 0.00 2.41
2404 2514 2.366533 CTTGTCGTCTAGAGGGCTACA 58.633 52.381 17.22 9.46 0.00 2.74
2405 2515 1.677052 CCTTGTCGTCTAGAGGGCTAC 59.323 57.143 17.22 7.12 0.00 3.58
2406 2516 1.409802 CCCTTGTCGTCTAGAGGGCTA 60.410 57.143 17.22 9.49 42.18 3.93
2407 2517 0.684805 CCCTTGTCGTCTAGAGGGCT 60.685 60.000 17.22 0.00 42.18 5.19
2408 2518 1.817209 CCCTTGTCGTCTAGAGGGC 59.183 63.158 10.08 10.08 42.18 5.19
2410 2520 1.134965 CAAGCCCTTGTCGTCTAGAGG 60.135 57.143 6.08 6.08 35.92 3.69
2411 2521 1.737363 GCAAGCCCTTGTCGTCTAGAG 60.737 57.143 9.53 0.00 42.31 2.43
2412 2522 0.246635 GCAAGCCCTTGTCGTCTAGA 59.753 55.000 9.53 0.00 42.31 2.43
2413 2523 0.247736 AGCAAGCCCTTGTCGTCTAG 59.752 55.000 9.53 0.00 42.31 2.43
2414 2524 0.037326 CAGCAAGCCCTTGTCGTCTA 60.037 55.000 9.53 0.00 42.31 2.59
2415 2525 1.302033 CAGCAAGCCCTTGTCGTCT 60.302 57.895 9.53 0.00 42.31 4.18
2416 2526 2.328099 CCAGCAAGCCCTTGTCGTC 61.328 63.158 9.53 0.00 42.31 4.20
2417 2527 2.281761 CCAGCAAGCCCTTGTCGT 60.282 61.111 9.53 0.00 42.31 4.34
2418 2528 1.580845 CTTCCAGCAAGCCCTTGTCG 61.581 60.000 9.53 1.85 42.31 4.35
2419 2529 0.250901 TCTTCCAGCAAGCCCTTGTC 60.251 55.000 9.53 2.90 42.31 3.18
2420 2530 0.407139 ATCTTCCAGCAAGCCCTTGT 59.593 50.000 9.53 0.00 42.31 3.16
2421 2531 2.295885 CTATCTTCCAGCAAGCCCTTG 58.704 52.381 3.70 3.70 43.14 3.61
2422 2532 1.409381 GCTATCTTCCAGCAAGCCCTT 60.409 52.381 0.00 0.00 38.93 3.95
2423 2533 0.182299 GCTATCTTCCAGCAAGCCCT 59.818 55.000 0.00 0.00 38.93 5.19
2424 2534 0.182299 AGCTATCTTCCAGCAAGCCC 59.818 55.000 0.00 0.00 41.66 5.19
2425 2535 1.140652 AGAGCTATCTTCCAGCAAGCC 59.859 52.381 0.00 0.00 41.66 4.35
2426 2536 2.618442 AGAGCTATCTTCCAGCAAGC 57.382 50.000 0.00 0.00 41.66 4.01
2427 2537 3.244044 GGGTAGAGCTATCTTCCAGCAAG 60.244 52.174 3.74 0.00 43.12 4.01
2428 2538 2.700897 GGGTAGAGCTATCTTCCAGCAA 59.299 50.000 3.74 0.00 43.12 3.91
2429 2539 2.320781 GGGTAGAGCTATCTTCCAGCA 58.679 52.381 3.74 0.00 43.12 4.41
2430 2540 2.320781 TGGGTAGAGCTATCTTCCAGC 58.679 52.381 3.74 0.00 43.12 4.85
2431 2541 4.219115 TCTTGGGTAGAGCTATCTTCCAG 58.781 47.826 3.74 0.00 43.12 3.86
2432 2542 4.265856 TCTTGGGTAGAGCTATCTTCCA 57.734 45.455 3.74 0.00 43.12 3.53
2433 2543 4.221924 GGATCTTGGGTAGAGCTATCTTCC 59.778 50.000 0.00 0.00 41.18 3.46
2434 2544 4.835615 TGGATCTTGGGTAGAGCTATCTTC 59.164 45.833 0.00 0.00 39.29 2.87
2435 2545 4.820775 TGGATCTTGGGTAGAGCTATCTT 58.179 43.478 0.00 0.00 39.29 2.40
2436 2546 4.477536 TGGATCTTGGGTAGAGCTATCT 57.522 45.455 0.00 0.00 39.29 1.98
2437 2547 4.020662 CCTTGGATCTTGGGTAGAGCTATC 60.021 50.000 0.00 0.00 39.29 2.08
2438 2548 3.906846 CCTTGGATCTTGGGTAGAGCTAT 59.093 47.826 0.00 0.00 39.29 2.97
2439 2549 3.309296 CCTTGGATCTTGGGTAGAGCTA 58.691 50.000 0.00 0.00 39.29 3.32
2440 2550 2.122768 CCTTGGATCTTGGGTAGAGCT 58.877 52.381 0.00 0.00 39.29 4.09
2441 2551 1.840635 ACCTTGGATCTTGGGTAGAGC 59.159 52.381 0.00 0.00 38.59 4.09
2442 2552 4.265073 CAAACCTTGGATCTTGGGTAGAG 58.735 47.826 0.00 0.00 36.02 2.43
2443 2553 4.301072 CAAACCTTGGATCTTGGGTAGA 57.699 45.455 0.00 0.00 37.28 2.59
2456 2566 5.128992 ACGGCTTAAATAACCAAACCTTG 57.871 39.130 0.00 0.00 0.00 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.