Multiple sequence alignment - TraesCS4B01G306200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G306200 chr4B 100.000 6969 0 0 1 6969 595277152 595270184 0.000000e+00 12870.0
1 TraesCS4B01G306200 chr4D 94.189 4147 150 37 2310 6391 472930023 472925903 0.000000e+00 6239.0
2 TraesCS4B01G306200 chr4D 82.886 894 109 33 5523 6391 472880144 472879270 0.000000e+00 763.0
3 TraesCS4B01G306200 chr4D 85.302 728 54 18 1375 2095 472930702 472930021 0.000000e+00 702.0
4 TraesCS4B01G306200 chr4D 92.070 454 19 7 855 1302 472931164 472930722 2.130000e-174 623.0
5 TraesCS4B01G306200 chr4D 91.667 324 17 2 1 314 472932039 472931716 2.310000e-119 440.0
6 TraesCS4B01G306200 chr4D 94.118 255 10 2 6715 6969 472924293 472924044 3.940000e-102 383.0
7 TraesCS4B01G306200 chr4D 92.308 273 12 5 6390 6662 472925848 472925585 5.100000e-101 379.0
8 TraesCS4B01G306200 chr4D 94.931 217 11 0 2096 2312 45391837 45391621 2.410000e-89 340.0
9 TraesCS4B01G306200 chr4D 92.827 237 13 4 2094 2327 179931019 179930784 2.410000e-89 340.0
10 TraesCS4B01G306200 chr4D 94.872 78 3 1 6594 6671 472481821 472481897 3.410000e-23 121.0
11 TraesCS4B01G306200 chr4D 81.633 147 22 5 2309 2452 98660669 98660525 4.420000e-22 117.0
12 TraesCS4B01G306200 chr4D 94.828 58 2 1 6614 6671 30847626 30847682 9.630000e-14 89.8
13 TraesCS4B01G306200 chr4D 93.103 58 3 1 6614 6671 30891661 30891717 4.480000e-12 84.2
14 TraesCS4B01G306200 chr4A 92.325 2280 124 24 2310 4547 679978124 679975854 0.000000e+00 3193.0
15 TraesCS4B01G306200 chr4A 92.418 1807 80 31 4589 6391 679975741 679973988 0.000000e+00 2525.0
16 TraesCS4B01G306200 chr4A 84.615 780 73 25 1326 2095 679978864 679978122 0.000000e+00 732.0
17 TraesCS4B01G306200 chr4A 87.692 585 31 12 6390 6969 679973933 679973385 1.640000e-180 643.0
18 TraesCS4B01G306200 chr4A 83.077 715 58 36 632 1310 679979519 679978832 6.020000e-165 592.0
19 TraesCS4B01G306200 chr4A 87.063 286 18 6 39 316 679980229 679979955 8.780000e-79 305.0
20 TraesCS4B01G306200 chr4A 78.014 141 26 5 2311 2448 650372551 650372413 4.480000e-12 84.2
21 TraesCS4B01G306200 chr4A 79.200 125 18 8 2328 2448 40868825 40868945 5.790000e-11 80.5
22 TraesCS4B01G306200 chr4A 84.146 82 8 3 139 220 626307100 626307024 2.700000e-09 75.0
23 TraesCS4B01G306200 chr4A 93.750 48 3 0 5484 5531 679971662 679971615 9.700000e-09 73.1
24 TraesCS4B01G306200 chr2D 95.434 219 10 0 2094 2312 284559957 284560175 4.000000e-92 350.0
25 TraesCS4B01G306200 chr2D 94.977 219 11 0 2094 2312 204855801 204856019 1.860000e-90 344.0
26 TraesCS4B01G306200 chr2D 93.333 225 15 0 2094 2318 21826925 21826701 4.030000e-87 333.0
27 TraesCS4B01G306200 chr5D 94.977 219 11 0 2094 2312 421982367 421982585 1.860000e-90 344.0
28 TraesCS4B01G306200 chr5D 88.636 44 3 2 6675 6717 104119374 104119416 1.300000e-02 52.8
29 TraesCS4B01G306200 chr1D 94.570 221 12 0 2092 2312 442835906 442835686 6.690000e-90 342.0
30 TraesCS4B01G306200 chr1D 78.832 137 24 5 2311 2445 316879503 316879636 3.460000e-13 87.9
31 TraesCS4B01G306200 chr1D 97.619 42 1 0 467 508 154021317 154021276 9.700000e-09 73.1
32 TraesCS4B01G306200 chr1D 100.000 33 0 0 6690 6722 298620929 298620961 2.100000e-05 62.1
33 TraesCS4B01G306200 chr3D 94.170 223 13 0 2090 2312 108290839 108291061 2.410000e-89 340.0
34 TraesCS4B01G306200 chr3D 97.561 41 1 0 468 508 460420102 460420142 3.490000e-08 71.3
35 TraesCS4B01G306200 chr3D 94.737 38 1 1 6690 6727 71512835 71512799 2.720000e-04 58.4
36 TraesCS4B01G306200 chr3D 92.105 38 3 0 6686 6723 278500757 278500720 4.000000e-03 54.7
37 TraesCS4B01G306200 chr2B 94.521 219 12 0 2094 2312 782101587 782101369 8.660000e-89 339.0
38 TraesCS4B01G306200 chr7D 80.588 170 26 7 6503 6671 78412300 78412463 2.640000e-24 124.0
39 TraesCS4B01G306200 chr7D 80.272 147 24 5 2309 2452 79873781 79873925 9.560000e-19 106.0
40 TraesCS4B01G306200 chr7D 77.857 140 28 3 2311 2448 149980110 149980248 4.480000e-12 84.2
41 TraesCS4B01G306200 chr7D 92.105 38 3 0 6686 6723 230465043 230465006 4.000000e-03 54.7
42 TraesCS4B01G306200 chr6D 78.986 138 25 3 2312 2448 469577927 469577793 2.680000e-14 91.6
43 TraesCS4B01G306200 chr6D 100.000 33 0 0 6690 6722 465968888 465968856 2.100000e-05 62.1
44 TraesCS4B01G306200 chr1B 97.619 42 1 0 467 508 223800121 223800080 9.700000e-09 73.1
45 TraesCS4B01G306200 chr1B 97.222 36 0 1 6690 6724 118121125 118121160 7.550000e-05 60.2
46 TraesCS4B01G306200 chr1B 97.222 36 0 1 6690 6724 118132241 118132206 7.550000e-05 60.2
47 TraesCS4B01G306200 chr1A 97.619 42 1 0 467 508 206793682 206793723 9.700000e-09 73.1
48 TraesCS4B01G306200 chr7B 95.455 44 2 0 465 508 102228174 102228131 3.490000e-08 71.3
49 TraesCS4B01G306200 chr7A 95.349 43 2 0 466 508 561594568 561594610 1.250000e-07 69.4
50 TraesCS4B01G306200 chr6B 88.636 44 4 1 6690 6733 408680873 408680915 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G306200 chr4B 595270184 595277152 6968 True 12870.000000 12870 100.000000 1 6969 1 chr4B.!!$R1 6968
1 TraesCS4B01G306200 chr4D 472924044 472932039 7995 True 1461.000000 6239 91.609000 1 6969 6 chr4D.!!$R5 6968
2 TraesCS4B01G306200 chr4D 472879270 472880144 874 True 763.000000 763 82.886000 5523 6391 1 chr4D.!!$R4 868
3 TraesCS4B01G306200 chr4A 679971615 679980229 8614 True 1151.871429 3193 88.705714 39 6969 7 chr4A.!!$R3 6930

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
754 927 0.168348 CAGCACATGCAGCAGTTCTC 59.832 55.000 12.59 0.0 45.16 2.87 F
1583 1823 0.034896 ACACCCCGCTGTCAGTTAAG 59.965 55.000 0.93 0.0 0.00 1.85 F
2127 2394 0.178068 AGTTCACAAGTCCTGCACGT 59.822 50.000 0.00 0.0 0.00 4.49 F
2300 2567 0.320421 GCACGCCCTGTAAACTGAGA 60.320 55.000 0.00 0.0 0.00 3.27 F
2302 2569 1.272490 CACGCCCTGTAAACTGAGAGA 59.728 52.381 0.00 0.0 0.00 3.10 F
2303 2570 1.546476 ACGCCCTGTAAACTGAGAGAG 59.454 52.381 0.00 0.0 0.00 3.20 F
2304 2571 1.819288 CGCCCTGTAAACTGAGAGAGA 59.181 52.381 0.00 0.0 0.00 3.10 F
3009 3302 1.828595 TGCCTATGAAGTCGCCTTACA 59.171 47.619 0.00 0.0 0.00 2.41 F
3048 3341 2.231716 AAGTTATGAAGGGGGTTGGC 57.768 50.000 0.00 0.0 0.00 4.52 F
5038 5462 2.009774 CCTCAGGGTAATTGTGCTTCG 58.990 52.381 0.00 0.0 0.00 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2108 2375 0.178068 ACGTGCAGGACTTGTGAACT 59.822 50.000 14.38 0.0 0.00 3.01 R
3547 3866 1.227943 GCGCAATAGGGCCATCAGA 60.228 57.895 6.18 0.0 46.99 3.27 R
3741 4063 5.409826 GTCACAAACAAGGTATCTCAAGAGG 59.590 44.000 0.00 0.0 0.00 3.69 R
3998 4321 5.690865 TCAAAACTGACCCTATTGTTGACT 58.309 37.500 0.00 0.0 0.00 3.41 R
4275 4601 7.226441 TCACTATTCCCACATCCTATTGAATG 58.774 38.462 0.00 0.0 0.00 2.67 R
4387 4713 1.355381 ACTGATCCTTTCCACCATGCA 59.645 47.619 0.00 0.0 0.00 3.96 R
4570 4991 9.522804 GACACAACATGTTATAAACAAAGGAAA 57.477 29.630 11.53 0.0 45.86 3.13 R
4868 5292 2.002586 CGATGAACTACAAGTGCAGGG 58.997 52.381 0.00 0.0 37.15 4.45 R
5180 5605 2.027469 ACCCAATAAGGAGTCGTTGTCC 60.027 50.000 8.32 0.0 41.22 4.02 R
6695 8514 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.0 0.00 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.285827 ATTCTCTCGTTTCCAGAGCG 57.714 50.000 0.00 0.00 37.84 5.03
104 115 4.477780 CAGACTAGAGTGGAAACGAGAAC 58.522 47.826 0.00 0.00 0.00 3.01
134 148 2.813179 GACACGCGTGGATGCCATC 61.813 63.158 39.21 23.50 35.28 3.51
226 243 2.727544 CCAGTTGCCACCGGTTTG 59.272 61.111 2.97 0.00 0.00 2.93
314 331 1.739562 GCACAACTCCCGCTCTCTG 60.740 63.158 0.00 0.00 0.00 3.35
357 388 3.285371 GTCCGATGACCAGACCGT 58.715 61.111 0.00 0.00 35.34 4.83
358 389 1.153823 GTCCGATGACCAGACCGTG 60.154 63.158 0.00 0.00 35.34 4.94
367 398 1.358759 CCAGACCGTGGTTTGTTGC 59.641 57.895 8.56 0.00 42.17 4.17
368 399 1.358759 CAGACCGTGGTTTGTTGCC 59.641 57.895 1.54 0.00 0.00 4.52
369 400 1.101049 CAGACCGTGGTTTGTTGCCT 61.101 55.000 1.54 0.00 0.00 4.75
370 401 0.818040 AGACCGTGGTTTGTTGCCTC 60.818 55.000 0.00 0.00 0.00 4.70
371 402 0.818040 GACCGTGGTTTGTTGCCTCT 60.818 55.000 0.00 0.00 0.00 3.69
372 403 0.818040 ACCGTGGTTTGTTGCCTCTC 60.818 55.000 0.00 0.00 0.00 3.20
375 406 1.896660 TGGTTTGTTGCCTCTCGCC 60.897 57.895 0.00 0.00 36.24 5.54
377 408 2.668212 TTTGTTGCCTCTCGCCGG 60.668 61.111 0.00 0.00 36.24 6.13
390 421 4.067913 GCCGGCCATGGGTGTTTG 62.068 66.667 18.11 0.00 0.00 2.93
391 422 2.282816 CCGGCCATGGGTGTTTGA 60.283 61.111 15.13 0.00 0.00 2.69
392 423 1.682005 CCGGCCATGGGTGTTTGAT 60.682 57.895 15.13 0.00 0.00 2.57
393 424 1.257055 CCGGCCATGGGTGTTTGATT 61.257 55.000 15.13 0.00 0.00 2.57
394 425 0.607620 CGGCCATGGGTGTTTGATTT 59.392 50.000 15.13 0.00 0.00 2.17
395 426 1.001860 CGGCCATGGGTGTTTGATTTT 59.998 47.619 15.13 0.00 0.00 1.82
401 433 4.309099 CATGGGTGTTTGATTTTCCACTG 58.691 43.478 0.00 0.00 0.00 3.66
404 436 3.572255 GGGTGTTTGATTTTCCACTGCTA 59.428 43.478 0.00 0.00 0.00 3.49
405 437 4.220602 GGGTGTTTGATTTTCCACTGCTAT 59.779 41.667 0.00 0.00 0.00 2.97
411 443 7.652909 TGTTTGATTTTCCACTGCTATTTTCAG 59.347 33.333 0.00 0.00 37.56 3.02
412 444 6.899393 TGATTTTCCACTGCTATTTTCAGT 57.101 33.333 0.00 0.00 44.87 3.41
415 447 6.817765 TTTTCCACTGCTATTTTCAGTAGG 57.182 37.500 0.00 0.00 42.38 3.18
431 463 3.434641 CAGTAGGCTGAAACATGTCAGTG 59.565 47.826 14.16 3.11 45.75 3.66
432 464 2.645838 AGGCTGAAACATGTCAGTGT 57.354 45.000 14.16 1.99 45.75 3.55
433 465 3.769739 AGGCTGAAACATGTCAGTGTA 57.230 42.857 14.16 0.00 45.75 2.90
434 466 3.668447 AGGCTGAAACATGTCAGTGTAG 58.332 45.455 14.16 3.24 45.75 2.74
435 467 3.324846 AGGCTGAAACATGTCAGTGTAGA 59.675 43.478 14.16 0.00 45.75 2.59
436 468 4.065088 GGCTGAAACATGTCAGTGTAGAA 58.935 43.478 14.16 0.00 45.75 2.10
437 469 4.083802 GGCTGAAACATGTCAGTGTAGAAC 60.084 45.833 14.16 0.00 45.75 3.01
438 470 4.752101 GCTGAAACATGTCAGTGTAGAACT 59.248 41.667 14.16 0.00 45.75 3.01
439 471 5.926542 GCTGAAACATGTCAGTGTAGAACTA 59.073 40.000 14.16 0.00 45.75 2.24
440 472 6.128795 GCTGAAACATGTCAGTGTAGAACTAC 60.129 42.308 14.16 5.18 45.75 2.73
442 474 4.436242 ACATGTCAGTGTAGAACTACCG 57.564 45.455 9.11 0.00 36.83 4.02
443 475 3.179830 CATGTCAGTGTAGAACTACCGC 58.820 50.000 9.11 3.40 36.83 5.68
444 476 1.542915 TGTCAGTGTAGAACTACCGCC 59.457 52.381 9.11 0.00 36.83 6.13
446 478 0.801067 CAGTGTAGAACTACCGCCGC 60.801 60.000 9.11 0.00 36.83 6.53
448 480 2.334946 TGTAGAACTACCGCCGCGT 61.335 57.895 12.58 2.59 35.26 6.01
449 481 1.870901 GTAGAACTACCGCCGCGTG 60.871 63.158 12.58 5.88 0.00 5.34
450 482 2.334946 TAGAACTACCGCCGCGTGT 61.335 57.895 12.58 11.61 0.00 4.49
451 483 1.024046 TAGAACTACCGCCGCGTGTA 61.024 55.000 12.58 12.12 0.00 2.90
453 485 1.677353 GAACTACCGCCGCGTGTAAC 61.677 60.000 12.58 5.06 0.00 2.50
454 486 2.126385 CTACCGCCGCGTGTAACA 60.126 61.111 12.58 0.00 35.74 2.41
455 487 2.430582 TACCGCCGCGTGTAACAC 60.431 61.111 12.58 0.00 35.74 3.32
458 490 1.733758 CCGCCGCGTGTAACACTAA 60.734 57.895 12.58 0.00 35.74 2.24
460 492 1.547909 CGCCGCGTGTAACACTAATA 58.452 50.000 4.92 0.00 35.74 0.98
461 493 1.253545 CGCCGCGTGTAACACTAATAC 59.746 52.381 4.92 0.00 35.74 1.89
462 494 1.589779 GCCGCGTGTAACACTAATACC 59.410 52.381 4.92 0.00 35.74 2.73
463 495 2.736400 GCCGCGTGTAACACTAATACCT 60.736 50.000 4.92 0.00 35.74 3.08
464 496 2.855963 CCGCGTGTAACACTAATACCTG 59.144 50.000 4.92 0.00 35.74 4.00
465 497 2.280708 CGCGTGTAACACTAATACCTGC 59.719 50.000 0.00 0.00 35.74 4.85
470 502 5.970023 CGTGTAACACTAATACCTGCTACTC 59.030 44.000 0.00 0.00 35.74 2.59
472 504 4.650754 AACACTAATACCTGCTACTCCG 57.349 45.455 0.00 0.00 0.00 4.63
477 509 0.182061 ATACCTGCTACTCCGTCCGA 59.818 55.000 0.00 0.00 0.00 4.55
478 510 0.182061 TACCTGCTACTCCGTCCGAT 59.818 55.000 0.00 0.00 0.00 4.18
488 520 3.528532 ACTCCGTCCGATCCAAATTAAC 58.471 45.455 0.00 0.00 0.00 2.01
496 528 3.242413 CCGATCCAAATTAACTGTCGCAG 60.242 47.826 5.47 5.47 37.52 5.18
503 535 4.457834 AATTAACTGTCGCAGCTCTAGT 57.542 40.909 6.74 0.00 34.37 2.57
504 536 5.578005 AATTAACTGTCGCAGCTCTAGTA 57.422 39.130 6.74 0.00 34.37 1.82
505 537 2.923605 AACTGTCGCAGCTCTAGTAC 57.076 50.000 6.74 0.00 34.37 2.73
506 538 1.822506 ACTGTCGCAGCTCTAGTACA 58.177 50.000 6.74 0.00 34.37 2.90
511 543 3.126514 TGTCGCAGCTCTAGTACAAGTAC 59.873 47.826 2.18 2.18 36.35 2.73
512 544 3.126514 GTCGCAGCTCTAGTACAAGTACA 59.873 47.826 12.43 0.00 38.48 2.90
513 545 3.945921 TCGCAGCTCTAGTACAAGTACAT 59.054 43.478 12.43 1.44 38.48 2.29
514 546 4.038361 CGCAGCTCTAGTACAAGTACATG 58.962 47.826 12.43 0.00 38.48 3.21
515 547 4.363999 GCAGCTCTAGTACAAGTACATGG 58.636 47.826 12.43 2.92 38.48 3.66
517 549 5.583495 CAGCTCTAGTACAAGTACATGGTC 58.417 45.833 12.43 0.00 38.48 4.02
518 550 4.335874 AGCTCTAGTACAAGTACATGGTCG 59.664 45.833 12.43 0.00 38.48 4.79
519 551 4.334759 GCTCTAGTACAAGTACATGGTCGA 59.665 45.833 12.43 0.00 38.48 4.20
521 553 6.373186 TCTAGTACAAGTACATGGTCGATG 57.627 41.667 12.43 0.00 38.48 3.84
523 555 4.744570 AGTACAAGTACATGGTCGATGTG 58.255 43.478 10.47 0.00 45.43 3.21
525 557 4.471904 ACAAGTACATGGTCGATGTGAT 57.528 40.909 10.47 0.00 45.43 3.06
526 558 4.183865 ACAAGTACATGGTCGATGTGATG 58.816 43.478 10.47 8.69 45.43 3.07
528 560 4.046938 AGTACATGGTCGATGTGATGTC 57.953 45.455 10.47 0.00 45.43 3.06
530 562 1.211743 CATGGTCGATGTGATGTCCG 58.788 55.000 0.00 0.00 0.00 4.79
531 563 1.111277 ATGGTCGATGTGATGTCCGA 58.889 50.000 0.00 0.00 0.00 4.55
533 565 0.249073 GGTCGATGTGATGTCCGAGG 60.249 60.000 0.00 0.00 0.00 4.63
535 567 1.025041 TCGATGTGATGTCCGAGGAG 58.975 55.000 0.00 0.00 0.00 3.69
536 568 1.025041 CGATGTGATGTCCGAGGAGA 58.975 55.000 0.00 0.00 0.00 3.71
537 569 1.611006 CGATGTGATGTCCGAGGAGAT 59.389 52.381 1.02 1.02 0.00 2.75
538 570 2.606551 CGATGTGATGTCCGAGGAGATG 60.607 54.545 6.50 0.00 0.00 2.90
539 571 2.143876 TGTGATGTCCGAGGAGATGA 57.856 50.000 6.50 0.00 0.00 2.92
544 576 4.985409 GTGATGTCCGAGGAGATGATTAAC 59.015 45.833 6.50 0.00 0.00 2.01
549 581 3.255888 TCCGAGGAGATGATTAACCATCG 59.744 47.826 4.09 0.00 45.61 3.84
551 583 4.217767 CCGAGGAGATGATTAACCATCGTA 59.782 45.833 4.09 0.00 45.61 3.43
554 586 6.868864 CGAGGAGATGATTAACCATCGTATTT 59.131 38.462 4.09 0.00 45.61 1.40
556 588 8.608844 AGGAGATGATTAACCATCGTATTTTC 57.391 34.615 4.09 0.00 45.61 2.29
558 590 7.360101 GGAGATGATTAACCATCGTATTTTCCG 60.360 40.741 4.09 0.00 45.61 4.30
560 592 4.876679 TGATTAACCATCGTATTTTCCGCA 59.123 37.500 0.00 0.00 34.08 5.69
563 595 1.735571 ACCATCGTATTTTCCGCACAC 59.264 47.619 0.00 0.00 0.00 3.82
564 596 1.735018 CCATCGTATTTTCCGCACACA 59.265 47.619 0.00 0.00 0.00 3.72
565 597 2.475519 CCATCGTATTTTCCGCACACAC 60.476 50.000 0.00 0.00 0.00 3.82
566 598 1.867166 TCGTATTTTCCGCACACACA 58.133 45.000 0.00 0.00 0.00 3.72
567 599 1.527736 TCGTATTTTCCGCACACACAC 59.472 47.619 0.00 0.00 0.00 3.82
568 600 1.261885 CGTATTTTCCGCACACACACA 59.738 47.619 0.00 0.00 0.00 3.72
570 602 1.098869 ATTTTCCGCACACACACACA 58.901 45.000 0.00 0.00 0.00 3.72
571 603 0.881796 TTTTCCGCACACACACACAA 59.118 45.000 0.00 0.00 0.00 3.33
572 604 0.169230 TTTCCGCACACACACACAAC 59.831 50.000 0.00 0.00 0.00 3.32
573 605 0.675208 TTCCGCACACACACACAACT 60.675 50.000 0.00 0.00 0.00 3.16
574 606 1.062365 CCGCACACACACACAACTG 59.938 57.895 0.00 0.00 0.00 3.16
575 607 1.643868 CCGCACACACACACAACTGT 61.644 55.000 0.00 0.00 0.00 3.55
576 608 1.003108 CGCACACACACACAACTGTA 58.997 50.000 0.00 0.00 0.00 2.74
583 615 0.535102 ACACACAACTGTAGCCTGCC 60.535 55.000 0.00 0.00 0.00 4.85
584 616 1.073199 ACACAACTGTAGCCTGCCC 59.927 57.895 0.00 0.00 0.00 5.36
586 618 1.073199 ACAACTGTAGCCTGCCCAC 59.927 57.895 0.00 0.00 0.00 4.61
588 620 2.153401 AACTGTAGCCTGCCCACCA 61.153 57.895 0.00 0.00 0.00 4.17
592 624 1.078143 GTAGCCTGCCCACCAAGAG 60.078 63.158 0.00 0.00 0.00 2.85
594 626 1.267574 TAGCCTGCCCACCAAGAGAG 61.268 60.000 0.00 0.00 0.00 3.20
596 628 2.673523 CTGCCCACCAAGAGAGGG 59.326 66.667 0.00 0.00 45.68 4.30
598 630 2.610859 GCCCACCAAGAGAGGGGA 60.611 66.667 0.00 0.00 43.57 4.81
599 631 2.231380 GCCCACCAAGAGAGGGGAA 61.231 63.158 0.00 0.00 43.57 3.97
600 632 1.789576 GCCCACCAAGAGAGGGGAAA 61.790 60.000 0.00 0.00 43.57 3.13
623 786 3.762288 CCCATCAATCATCATCCATCCAC 59.238 47.826 0.00 0.00 0.00 4.02
625 788 3.513909 TCAATCATCATCCATCCACCC 57.486 47.619 0.00 0.00 0.00 4.61
627 790 3.399983 TCAATCATCATCCATCCACCCAT 59.600 43.478 0.00 0.00 0.00 4.00
648 818 1.311859 ACGCATCTGGCACCATAATG 58.688 50.000 7.50 7.50 45.17 1.90
668 838 4.537433 GCACCGCCCTAGAGCCAG 62.537 72.222 0.00 0.00 0.00 4.85
690 862 6.438763 CAGATCAATCATGCGTAGTAGTACA 58.561 40.000 8.43 0.00 0.00 2.90
743 916 2.044555 CAGGTCCAGCCAGCACATG 61.045 63.158 0.00 0.00 40.61 3.21
744 917 3.446570 GGTCCAGCCAGCACATGC 61.447 66.667 0.00 0.00 42.49 4.06
745 918 2.674033 GTCCAGCCAGCACATGCA 60.674 61.111 6.64 0.00 45.16 3.96
746 919 2.360726 TCCAGCCAGCACATGCAG 60.361 61.111 6.64 0.00 45.16 4.41
748 921 3.370231 CAGCCAGCACATGCAGCA 61.370 61.111 17.75 0.00 45.16 4.41
751 924 2.927580 GCCAGCACATGCAGCAGTT 61.928 57.895 12.59 0.00 45.16 3.16
752 925 1.211969 CCAGCACATGCAGCAGTTC 59.788 57.895 12.59 0.00 45.16 3.01
753 926 1.241990 CCAGCACATGCAGCAGTTCT 61.242 55.000 12.59 0.00 45.16 3.01
754 927 0.168348 CAGCACATGCAGCAGTTCTC 59.832 55.000 12.59 0.00 45.16 2.87
755 928 0.959372 AGCACATGCAGCAGTTCTCC 60.959 55.000 12.59 0.00 45.16 3.71
783 956 2.125753 GCGCAGAGCTAGCTGTGT 60.126 61.111 34.46 13.41 45.65 3.72
784 957 1.139734 GCGCAGAGCTAGCTGTGTA 59.860 57.895 34.46 0.00 45.65 2.90
785 958 0.249238 GCGCAGAGCTAGCTGTGTAT 60.249 55.000 34.46 7.68 45.65 2.29
786 959 1.001268 GCGCAGAGCTAGCTGTGTATA 60.001 52.381 34.46 0.00 45.65 1.47
787 960 2.656085 CGCAGAGCTAGCTGTGTATAC 58.344 52.381 34.46 20.93 40.56 1.47
849 1037 3.356639 TAGTCCAGAAGCAGCCGCG 62.357 63.158 0.00 0.00 45.49 6.46
867 1081 1.258676 CGGCCTACTATTCCTCCCTC 58.741 60.000 0.00 0.00 0.00 4.30
869 1083 1.480869 GGCCTACTATTCCTCCCTCGT 60.481 57.143 0.00 0.00 0.00 4.18
950 1175 1.813192 CTTCCTGTCTCCTCCGCTC 59.187 63.158 0.00 0.00 0.00 5.03
991 1216 3.581372 GGTGGATCCCCATCTCCC 58.419 66.667 9.90 0.00 45.68 4.30
994 1219 2.527875 GGATCCCCATCTCCCGCT 60.528 66.667 0.00 0.00 0.00 5.52
1323 1557 3.673484 GCTCCGCTGCAGGCAAAA 61.673 61.111 17.12 0.00 41.91 2.44
1324 1558 2.564975 CTCCGCTGCAGGCAAAAG 59.435 61.111 17.12 2.07 41.91 2.27
1325 1559 3.621892 CTCCGCTGCAGGCAAAAGC 62.622 63.158 17.12 0.00 41.91 3.51
1326 1560 3.677648 CCGCTGCAGGCAAAAGCT 61.678 61.111 17.12 0.00 41.91 3.74
1327 1561 2.126580 CGCTGCAGGCAAAAGCTC 60.127 61.111 17.12 0.00 41.91 4.09
1328 1562 2.126580 GCTGCAGGCAAAAGCTCG 60.127 61.111 17.12 0.00 41.35 5.03
1329 1563 2.564975 CTGCAGGCAAAAGCTCGG 59.435 61.111 5.57 0.00 0.00 4.63
1330 1564 3.621892 CTGCAGGCAAAAGCTCGGC 62.622 63.158 5.57 0.00 0.00 5.54
1331 1565 3.368571 GCAGGCAAAAGCTCGGCT 61.369 61.111 1.49 1.49 42.56 5.52
1333 1567 2.431683 AGGCAAAAGCTCGGCTGA 59.568 55.556 6.09 0.00 39.62 4.26
1334 1568 1.001641 AGGCAAAAGCTCGGCTGAT 60.002 52.632 0.00 0.00 39.62 2.90
1335 1569 1.028868 AGGCAAAAGCTCGGCTGATC 61.029 55.000 0.00 0.00 39.62 2.92
1336 1570 1.431036 GCAAAAGCTCGGCTGATCC 59.569 57.895 0.00 0.00 39.62 3.36
1347 1581 4.498520 CTGATCCGTGCCGTCGCT 62.499 66.667 0.00 0.00 35.36 4.93
1348 1582 4.492160 TGATCCGTGCCGTCGCTC 62.492 66.667 0.00 0.00 35.36 5.03
1359 1593 3.843240 GTCGCTCGCGGCTTCTTG 61.843 66.667 6.13 0.00 41.28 3.02
1360 1594 4.357947 TCGCTCGCGGCTTCTTGT 62.358 61.111 6.13 0.00 40.25 3.16
1361 1595 3.414700 CGCTCGCGGCTTCTTGTT 61.415 61.111 6.13 0.00 39.13 2.83
1362 1596 2.174349 GCTCGCGGCTTCTTGTTG 59.826 61.111 6.13 0.00 38.06 3.33
1363 1597 2.174349 CTCGCGGCTTCTTGTTGC 59.826 61.111 6.13 0.00 0.00 4.17
1365 1599 4.012895 CGCGGCTTCTTGTTGCGT 62.013 61.111 0.00 0.00 43.50 5.24
1366 1600 2.331451 GCGGCTTCTTGTTGCGTT 59.669 55.556 0.00 0.00 0.00 4.84
1367 1601 2.010817 GCGGCTTCTTGTTGCGTTG 61.011 57.895 0.00 0.00 0.00 4.10
1368 1602 2.010817 CGGCTTCTTGTTGCGTTGC 61.011 57.895 0.00 0.00 0.00 4.17
1369 1603 1.065600 GGCTTCTTGTTGCGTTGCA 59.934 52.632 0.00 0.00 36.47 4.08
1370 1604 0.527385 GGCTTCTTGTTGCGTTGCAA 60.527 50.000 0.00 0.00 46.80 4.08
1456 1690 4.742201 TGGCGCTCAAGGAGACGC 62.742 66.667 19.35 19.35 46.10 5.19
1557 1797 1.629043 AAAGGTCAGCCGTCTCAGTA 58.371 50.000 0.00 0.00 40.50 2.74
1576 1816 1.608717 ATCTCTCACACCCCGCTGTC 61.609 60.000 0.00 0.00 0.00 3.51
1577 1817 2.523168 TCTCACACCCCGCTGTCA 60.523 61.111 0.00 0.00 0.00 3.58
1578 1818 2.047844 CTCACACCCCGCTGTCAG 60.048 66.667 0.00 0.00 0.00 3.51
1579 1819 2.842462 TCACACCCCGCTGTCAGT 60.842 61.111 0.93 0.00 0.00 3.41
1580 1820 2.111043 CACACCCCGCTGTCAGTT 59.889 61.111 0.93 0.00 0.00 3.16
1581 1821 1.116536 TCACACCCCGCTGTCAGTTA 61.117 55.000 0.93 0.00 0.00 2.24
1583 1823 0.034896 ACACCCCGCTGTCAGTTAAG 59.965 55.000 0.93 0.00 0.00 1.85
1591 1831 4.637534 CCCGCTGTCAGTTAAGTACTACTA 59.362 45.833 0.00 0.00 34.56 1.82
1592 1832 5.448360 CCCGCTGTCAGTTAAGTACTACTAC 60.448 48.000 0.00 0.00 34.56 2.73
1593 1833 5.353678 CCGCTGTCAGTTAAGTACTACTACT 59.646 44.000 0.00 0.00 34.56 2.57
1594 1834 6.536582 CCGCTGTCAGTTAAGTACTACTACTA 59.463 42.308 0.00 0.00 34.56 1.82
1595 1835 7.397970 CGCTGTCAGTTAAGTACTACTACTAC 58.602 42.308 0.00 0.00 34.56 2.73
1596 1836 7.277539 CGCTGTCAGTTAAGTACTACTACTACT 59.722 40.741 0.00 0.00 34.56 2.57
1597 1837 9.593134 GCTGTCAGTTAAGTACTACTACTACTA 57.407 37.037 0.00 0.00 34.56 1.82
1606 1846 7.061566 AGTACTACTACTACTACTACCAGCC 57.938 44.000 0.00 0.00 30.81 4.85
1611 1851 5.192176 ACTACTACTACTACCAGCCAGTTC 58.808 45.833 0.00 0.00 0.00 3.01
1617 1857 0.618968 CTACCAGCCAGTTCCTCCCT 60.619 60.000 0.00 0.00 0.00 4.20
1618 1858 0.909610 TACCAGCCAGTTCCTCCCTG 60.910 60.000 0.00 0.00 0.00 4.45
1629 1869 5.844516 CCAGTTCCTCCCTGTCCTATTTATA 59.155 44.000 0.00 0.00 0.00 0.98
1637 1877 4.327680 CCTGTCCTATTTATAGCAAGGGC 58.672 47.826 0.00 0.00 41.61 5.19
1638 1878 4.327680 CTGTCCTATTTATAGCAAGGGCC 58.672 47.826 0.00 0.00 42.56 5.80
1639 1879 3.719479 TGTCCTATTTATAGCAAGGGCCA 59.281 43.478 6.18 0.00 42.56 5.36
1640 1880 4.353788 TGTCCTATTTATAGCAAGGGCCAT 59.646 41.667 6.18 0.00 42.56 4.40
1641 1881 4.944317 GTCCTATTTATAGCAAGGGCCATC 59.056 45.833 6.18 0.00 42.56 3.51
1642 1882 3.941483 CCTATTTATAGCAAGGGCCATCG 59.059 47.826 6.18 0.00 42.56 3.84
1643 1883 3.788227 ATTTATAGCAAGGGCCATCGA 57.212 42.857 6.18 0.00 42.56 3.59
1644 1884 3.788227 TTTATAGCAAGGGCCATCGAT 57.212 42.857 6.18 0.00 42.56 3.59
1645 1885 3.788227 TTATAGCAAGGGCCATCGATT 57.212 42.857 6.18 0.00 42.56 3.34
1646 1886 2.664402 ATAGCAAGGGCCATCGATTT 57.336 45.000 6.18 0.00 42.56 2.17
1647 1887 1.679139 TAGCAAGGGCCATCGATTTG 58.321 50.000 6.18 0.72 42.56 2.32
1648 1888 1.039233 AGCAAGGGCCATCGATTTGG 61.039 55.000 6.18 0.00 42.56 3.28
1671 1930 2.290641 TGTAACAAAGATGGTGGGCGAT 60.291 45.455 0.00 0.00 0.00 4.58
1684 1943 2.491693 GTGGGCGATTCCTTGATTTGAA 59.508 45.455 0.00 0.00 34.39 2.69
1685 1944 2.754552 TGGGCGATTCCTTGATTTGAAG 59.245 45.455 0.00 0.00 34.39 3.02
1701 1960 6.601613 TGATTTGAAGTAATAATTGCCTCCGT 59.398 34.615 0.00 0.00 0.00 4.69
1708 1967 2.489938 TAATTGCCTCCGTCTTTGCT 57.510 45.000 0.00 0.00 0.00 3.91
1738 1998 4.342772 GTGTAAAAACAGTGTGTGAGCAG 58.657 43.478 0.00 0.00 0.00 4.24
1753 2013 2.298446 TGAGCAGACTCTTGAAGGACAG 59.702 50.000 0.00 0.00 43.85 3.51
1768 2028 1.754226 GGACAGGAGGAAGAGCAGTAG 59.246 57.143 0.00 0.00 0.00 2.57
1769 2029 2.452505 GACAGGAGGAAGAGCAGTAGT 58.547 52.381 0.00 0.00 0.00 2.73
1770 2030 3.622630 GACAGGAGGAAGAGCAGTAGTA 58.377 50.000 0.00 0.00 0.00 1.82
1776 2036 6.007703 AGGAGGAAGAGCAGTAGTATATGTC 58.992 44.000 0.00 0.00 0.00 3.06
1836 2096 6.449635 TTTGATGTGGATTAGGTGTATTGC 57.550 37.500 0.00 0.00 0.00 3.56
1838 2098 4.080072 TGATGTGGATTAGGTGTATTGCCA 60.080 41.667 0.00 0.00 0.00 4.92
1847 2107 8.515414 GGATTAGGTGTATTGCCATAGAAATTC 58.485 37.037 0.00 0.00 0.00 2.17
1858 2118 9.783081 ATTGCCATAGAAATTCTTCTTTGTTTT 57.217 25.926 0.00 0.00 42.17 2.43
1884 2144 0.785979 CCGTCAATTGCAAGCAAAGC 59.214 50.000 11.89 2.08 39.55 3.51
1961 2221 4.712122 ACAGTGTGGAAACGATGTTTTT 57.288 36.364 0.00 0.00 0.00 1.94
1988 2248 7.643528 TGCTACTTTAATCTATGATTGCTCG 57.356 36.000 3.35 0.00 0.00 5.03
2002 2262 4.454504 TGATTGCTCGTTTTTACTTCCTCC 59.545 41.667 0.00 0.00 0.00 4.30
2003 2263 3.478857 TGCTCGTTTTTACTTCCTCCA 57.521 42.857 0.00 0.00 0.00 3.86
2007 2267 3.592059 TCGTTTTTACTTCCTCCATCCG 58.408 45.455 0.00 0.00 0.00 4.18
2018 2278 2.370849 TCCTCCATCCGGGTTTATTAGC 59.629 50.000 0.00 0.00 38.11 3.09
2020 2280 2.372172 CTCCATCCGGGTTTATTAGCCT 59.628 50.000 0.00 0.00 42.48 4.58
2059 2325 6.015519 AGCCAAAGTTTGACTATACATTTGCA 60.016 34.615 17.33 0.00 0.00 4.08
2099 2366 9.281371 GTTATATGTAGGAAAAATGGTACTCCC 57.719 37.037 0.00 0.00 0.00 4.30
2100 2367 7.707467 ATATGTAGGAAAAATGGTACTCCCT 57.293 36.000 0.00 0.00 0.00 4.20
2101 2368 5.431179 TGTAGGAAAAATGGTACTCCCTC 57.569 43.478 0.00 0.00 0.00 4.30
2102 2369 4.226620 TGTAGGAAAAATGGTACTCCCTCC 59.773 45.833 0.00 0.00 0.00 4.30
2103 2370 2.238898 AGGAAAAATGGTACTCCCTCCG 59.761 50.000 0.00 0.00 0.00 4.63
2104 2371 2.026542 GGAAAAATGGTACTCCCTCCGT 60.027 50.000 0.00 0.00 0.00 4.69
2105 2372 3.560668 GGAAAAATGGTACTCCCTCCGTT 60.561 47.826 0.00 0.00 34.83 4.44
2106 2373 3.801307 AAAATGGTACTCCCTCCGTTT 57.199 42.857 0.00 0.00 42.48 3.60
2107 2374 3.345508 AAATGGTACTCCCTCCGTTTC 57.654 47.619 0.00 0.00 38.16 2.78
2108 2375 1.946984 ATGGTACTCCCTCCGTTTCA 58.053 50.000 0.00 0.00 0.00 2.69
2109 2376 1.263356 TGGTACTCCCTCCGTTTCAG 58.737 55.000 0.00 0.00 0.00 3.02
2110 2377 1.264295 GGTACTCCCTCCGTTTCAGT 58.736 55.000 0.00 0.00 0.00 3.41
2111 2378 1.622312 GGTACTCCCTCCGTTTCAGTT 59.378 52.381 0.00 0.00 0.00 3.16
2112 2379 2.353505 GGTACTCCCTCCGTTTCAGTTC 60.354 54.545 0.00 0.00 0.00 3.01
2113 2380 1.420430 ACTCCCTCCGTTTCAGTTCA 58.580 50.000 0.00 0.00 0.00 3.18
2114 2381 1.070289 ACTCCCTCCGTTTCAGTTCAC 59.930 52.381 0.00 0.00 0.00 3.18
2115 2382 1.070134 CTCCCTCCGTTTCAGTTCACA 59.930 52.381 0.00 0.00 0.00 3.58
2116 2383 1.487142 TCCCTCCGTTTCAGTTCACAA 59.513 47.619 0.00 0.00 0.00 3.33
2117 2384 1.873591 CCCTCCGTTTCAGTTCACAAG 59.126 52.381 0.00 0.00 0.00 3.16
2118 2385 2.561569 CCTCCGTTTCAGTTCACAAGT 58.438 47.619 0.00 0.00 0.00 3.16
2119 2386 2.544267 CCTCCGTTTCAGTTCACAAGTC 59.456 50.000 0.00 0.00 0.00 3.01
2120 2387 2.544267 CTCCGTTTCAGTTCACAAGTCC 59.456 50.000 0.00 0.00 0.00 3.85
2121 2388 2.169769 TCCGTTTCAGTTCACAAGTCCT 59.830 45.455 0.00 0.00 0.00 3.85
2122 2389 2.287915 CCGTTTCAGTTCACAAGTCCTG 59.712 50.000 0.00 0.00 0.00 3.86
2123 2390 2.286418 CGTTTCAGTTCACAAGTCCTGC 60.286 50.000 0.00 0.00 0.00 4.85
2124 2391 2.682856 GTTTCAGTTCACAAGTCCTGCA 59.317 45.455 0.00 0.00 0.00 4.41
2125 2392 1.953559 TCAGTTCACAAGTCCTGCAC 58.046 50.000 0.00 0.00 0.00 4.57
2126 2393 0.583438 CAGTTCACAAGTCCTGCACG 59.417 55.000 0.00 0.00 0.00 5.34
2127 2394 0.178068 AGTTCACAAGTCCTGCACGT 59.822 50.000 0.00 0.00 0.00 4.49
2128 2395 1.411246 AGTTCACAAGTCCTGCACGTA 59.589 47.619 0.00 0.00 0.00 3.57
2129 2396 2.037251 AGTTCACAAGTCCTGCACGTAT 59.963 45.455 0.00 0.00 0.00 3.06
2130 2397 2.078849 TCACAAGTCCTGCACGTATG 57.921 50.000 0.00 0.00 0.00 2.39
2142 2409 1.732941 CACGTATGCTTAGGTTGCCA 58.267 50.000 2.49 0.00 0.00 4.92
2143 2410 2.080693 CACGTATGCTTAGGTTGCCAA 58.919 47.619 2.49 0.00 0.00 4.52
2144 2411 2.682856 CACGTATGCTTAGGTTGCCAAT 59.317 45.455 2.49 0.00 0.00 3.16
2145 2412 3.128589 CACGTATGCTTAGGTTGCCAATT 59.871 43.478 2.49 0.00 0.00 2.32
2146 2413 3.761752 ACGTATGCTTAGGTTGCCAATTT 59.238 39.130 0.00 0.00 0.00 1.82
2147 2414 4.219725 ACGTATGCTTAGGTTGCCAATTTT 59.780 37.500 0.00 0.00 0.00 1.82
2148 2415 5.416326 ACGTATGCTTAGGTTGCCAATTTTA 59.584 36.000 0.00 0.00 0.00 1.52
2149 2416 6.096282 ACGTATGCTTAGGTTGCCAATTTTAT 59.904 34.615 0.00 0.00 0.00 1.40
2150 2417 6.636850 CGTATGCTTAGGTTGCCAATTTTATC 59.363 38.462 0.00 0.00 0.00 1.75
2151 2418 5.991933 TGCTTAGGTTGCCAATTTTATCA 57.008 34.783 0.00 0.00 0.00 2.15
2152 2419 5.719173 TGCTTAGGTTGCCAATTTTATCAC 58.281 37.500 0.00 0.00 0.00 3.06
2153 2420 5.109210 GCTTAGGTTGCCAATTTTATCACC 58.891 41.667 0.00 0.00 0.00 4.02
2154 2421 5.660460 CTTAGGTTGCCAATTTTATCACCC 58.340 41.667 0.00 0.00 0.00 4.61
2155 2422 3.790126 AGGTTGCCAATTTTATCACCCT 58.210 40.909 0.00 0.00 0.00 4.34
2156 2423 4.941713 AGGTTGCCAATTTTATCACCCTA 58.058 39.130 0.00 0.00 0.00 3.53
2157 2424 5.337788 AGGTTGCCAATTTTATCACCCTAA 58.662 37.500 0.00 0.00 0.00 2.69
2158 2425 5.963865 AGGTTGCCAATTTTATCACCCTAAT 59.036 36.000 0.00 0.00 0.00 1.73
2159 2426 7.129425 AGGTTGCCAATTTTATCACCCTAATA 58.871 34.615 0.00 0.00 0.00 0.98
2160 2427 7.789349 AGGTTGCCAATTTTATCACCCTAATAT 59.211 33.333 0.00 0.00 0.00 1.28
2161 2428 9.084533 GGTTGCCAATTTTATCACCCTAATATA 57.915 33.333 0.00 0.00 0.00 0.86
2210 2477 9.136323 ACCTTTTGAAAATAGAACATCTGAAGT 57.864 29.630 0.00 0.00 0.00 3.01
2211 2478 9.971922 CCTTTTGAAAATAGAACATCTGAAGTT 57.028 29.630 0.00 0.00 0.00 2.66
2260 2527 8.780846 ATATGACTTGTATTACGTTGGTCAAA 57.219 30.769 0.00 0.00 36.16 2.69
2261 2528 7.681939 ATGACTTGTATTACGTTGGTCAAAT 57.318 32.000 0.00 0.00 36.16 2.32
2262 2529 7.499321 TGACTTGTATTACGTTGGTCAAATT 57.501 32.000 0.00 0.00 30.81 1.82
2263 2530 7.356540 TGACTTGTATTACGTTGGTCAAATTG 58.643 34.615 0.00 0.00 30.81 2.32
2264 2531 7.226918 TGACTTGTATTACGTTGGTCAAATTGA 59.773 33.333 0.00 0.00 30.81 2.57
2265 2532 7.357303 ACTTGTATTACGTTGGTCAAATTGAC 58.643 34.615 17.16 17.16 46.23 3.18
2276 2543 4.138487 GTCAAATTGACGATCTAGGGGT 57.862 45.455 10.58 0.00 37.67 4.95
2277 2544 5.272283 GTCAAATTGACGATCTAGGGGTA 57.728 43.478 10.58 0.00 37.67 3.69
2278 2545 5.048507 GTCAAATTGACGATCTAGGGGTAC 58.951 45.833 10.58 0.00 37.67 3.34
2279 2546 4.049186 CAAATTGACGATCTAGGGGTACG 58.951 47.826 0.00 0.00 0.00 3.67
2280 2547 1.027357 TTGACGATCTAGGGGTACGC 58.973 55.000 0.29 0.29 43.76 4.42
2292 2559 4.781959 GTACGCGCACGCCCTGTA 62.782 66.667 5.73 3.39 45.53 2.74
2293 2560 4.053526 TACGCGCACGCCCTGTAA 62.054 61.111 5.73 0.00 45.53 2.41
2294 2561 3.570621 TACGCGCACGCCCTGTAAA 62.571 57.895 5.73 0.00 45.53 2.01
2295 2562 4.439472 CGCGCACGCCCTGTAAAC 62.439 66.667 8.75 0.00 37.98 2.01
2296 2563 3.047877 GCGCACGCCCTGTAAACT 61.048 61.111 0.30 0.00 34.56 2.66
2297 2564 2.860293 CGCACGCCCTGTAAACTG 59.140 61.111 0.00 0.00 0.00 3.16
2298 2565 1.666553 CGCACGCCCTGTAAACTGA 60.667 57.895 0.00 0.00 0.00 3.41
2299 2566 1.626654 CGCACGCCCTGTAAACTGAG 61.627 60.000 0.00 0.00 0.00 3.35
2300 2567 0.320421 GCACGCCCTGTAAACTGAGA 60.320 55.000 0.00 0.00 0.00 3.27
2301 2568 1.714794 CACGCCCTGTAAACTGAGAG 58.285 55.000 0.00 0.00 0.00 3.20
2302 2569 1.272490 CACGCCCTGTAAACTGAGAGA 59.728 52.381 0.00 0.00 0.00 3.10
2303 2570 1.546476 ACGCCCTGTAAACTGAGAGAG 59.454 52.381 0.00 0.00 0.00 3.20
2304 2571 1.819288 CGCCCTGTAAACTGAGAGAGA 59.181 52.381 0.00 0.00 0.00 3.10
2305 2572 2.159310 CGCCCTGTAAACTGAGAGAGAG 60.159 54.545 0.00 0.00 0.00 3.20
2306 2573 2.167487 GCCCTGTAAACTGAGAGAGAGG 59.833 54.545 0.00 0.00 0.00 3.69
2307 2574 2.763448 CCCTGTAAACTGAGAGAGAGGG 59.237 54.545 0.00 0.00 33.23 4.30
2308 2575 3.564571 CCCTGTAAACTGAGAGAGAGGGA 60.565 52.174 8.74 0.00 41.40 4.20
2309 2576 3.699038 CCTGTAAACTGAGAGAGAGGGAG 59.301 52.174 0.00 0.00 0.00 4.30
2310 2577 4.340617 CTGTAAACTGAGAGAGAGGGAGT 58.659 47.826 0.00 0.00 0.00 3.85
2311 2578 5.502079 CTGTAAACTGAGAGAGAGGGAGTA 58.498 45.833 0.00 0.00 0.00 2.59
2338 2605 8.670135 TCACTGAAAACTTCTTTCAAATACGAA 58.330 29.630 0.00 0.00 37.89 3.85
2418 2686 9.146984 GGTCAAAGTTTAACCCAAAATATAAGC 57.853 33.333 0.00 0.00 0.00 3.09
2598 2872 4.657013 ACTCTGCGTGATCTGGAGATATA 58.343 43.478 9.46 0.00 33.14 0.86
2692 2966 7.490725 AGTCTGTCTGAACTTAAATCATCATCG 59.509 37.037 0.00 0.00 0.00 3.84
2717 3009 3.130633 TGATGAATCAATACGGCTTCCG 58.869 45.455 3.42 3.42 42.77 4.30
2752 3044 4.411013 CAAGGTCTTCTTTCATTCCCCTT 58.589 43.478 0.00 0.00 32.41 3.95
2786 3078 4.255833 TGTTGCTTGGATGATTTTGGAC 57.744 40.909 0.00 0.00 0.00 4.02
2787 3079 3.896888 TGTTGCTTGGATGATTTTGGACT 59.103 39.130 0.00 0.00 0.00 3.85
2936 3229 6.762661 CCACATTTCCAATTTTCAGTGACTTT 59.237 34.615 0.00 0.00 0.00 2.66
3009 3302 1.828595 TGCCTATGAAGTCGCCTTACA 59.171 47.619 0.00 0.00 0.00 2.41
3015 3308 3.853831 TGAAGTCGCCTTACAATACGA 57.146 42.857 0.00 0.00 0.00 3.43
3045 3338 4.763279 CGTTACAAAGTTATGAAGGGGGTT 59.237 41.667 0.00 0.00 0.00 4.11
3048 3341 2.231716 AAGTTATGAAGGGGGTTGGC 57.768 50.000 0.00 0.00 0.00 4.52
3099 3392 7.701539 ACTTTGGTTATATCACAGAATGCAA 57.298 32.000 0.00 0.00 42.53 4.08
3100 3393 8.297470 ACTTTGGTTATATCACAGAATGCAAT 57.703 30.769 0.00 0.00 42.53 3.56
3118 3422 5.055812 TGCAATTTGTTTTCTGTCCCATTC 58.944 37.500 0.00 0.00 0.00 2.67
3132 3436 4.080919 TGTCCCATTCTATCTTCCACACTG 60.081 45.833 0.00 0.00 0.00 3.66
3547 3866 4.263727 TGCAGTGTATGGAGTTATTTGGGT 60.264 41.667 0.00 0.00 0.00 4.51
3628 3947 6.932356 ATGCAGGTCAAGTACTGATTATTG 57.068 37.500 0.00 0.00 36.14 1.90
3629 3948 5.804639 TGCAGGTCAAGTACTGATTATTGT 58.195 37.500 0.00 0.00 36.14 2.71
3684 4003 9.747898 ACCATTGTATGTTAACTTCTGGAAATA 57.252 29.630 7.22 0.00 0.00 1.40
3724 4046 7.620806 GCATTACAAAGTAGTACGGACAACTTC 60.621 40.741 0.00 0.00 31.15 3.01
3741 4063 8.972349 GGACAACTTCTCTGAATTTTCAAAATC 58.028 33.333 0.00 0.00 36.64 2.17
3812 4134 5.679734 AAATAGCAGCTACATTTGATCCG 57.320 39.130 3.59 0.00 0.00 4.18
3918 4241 6.290294 AGGCAATGCTTTATCTTTCATGTT 57.710 33.333 4.82 0.00 0.00 2.71
3937 4260 7.809665 TCATGTTGTTCACTAATGTCTCATTG 58.190 34.615 5.40 0.00 0.00 2.82
3998 4321 5.843673 TTGATGTTAGGCAAAAGTCACAA 57.156 34.783 0.00 0.00 0.00 3.33
4015 4341 4.452455 GTCACAAGTCAACAATAGGGTCAG 59.548 45.833 0.00 0.00 0.00 3.51
4068 4394 2.979813 GTTGGACTGTAATTGCTTTGCG 59.020 45.455 0.00 0.00 0.00 4.85
4109 4435 6.594744 ACATGGAATCATAGAGTGCATTACA 58.405 36.000 0.00 0.00 36.65 2.41
4868 5292 7.608761 CCTGTCTATATTCCAGTCTACCTAGTC 59.391 44.444 0.00 0.00 0.00 2.59
4925 5349 5.941948 AAAGGTACACAACTGTATCAAGC 57.058 39.130 0.00 0.00 36.55 4.01
4940 5364 6.898041 TGTATCAAGCAAACTGACATGTTAC 58.102 36.000 0.00 0.00 0.00 2.50
5038 5462 2.009774 CCTCAGGGTAATTGTGCTTCG 58.990 52.381 0.00 0.00 0.00 3.79
5180 5605 5.242838 TGCAAAAACATAACTTCACCCCTAG 59.757 40.000 0.00 0.00 0.00 3.02
5194 5619 1.558233 CCCTAGGACAACGACTCCTT 58.442 55.000 11.48 0.00 39.09 3.36
5295 5720 2.362077 CAGGCCTTACACAATAATGGGC 59.638 50.000 0.00 0.00 39.92 5.36
5375 5800 7.725251 TCTGCATGGTGAGTTCTTTTTATTTT 58.275 30.769 0.00 0.00 0.00 1.82
5404 5829 6.036083 CCCTAACTTGTCGTATCAAGAATGTG 59.964 42.308 18.49 7.68 45.11 3.21
5560 5985 1.578583 AGACACACAGTTTACCGCAC 58.421 50.000 0.00 0.00 0.00 5.34
5561 5986 0.584876 GACACACAGTTTACCGCACC 59.415 55.000 0.00 0.00 0.00 5.01
5562 5987 1.155424 ACACACAGTTTACCGCACCG 61.155 55.000 0.00 0.00 0.00 4.94
5563 5988 2.248835 ACACAGTTTACCGCACCGC 61.249 57.895 0.00 0.00 0.00 5.68
5564 5989 2.109387 ACAGTTTACCGCACCGCA 59.891 55.556 0.00 0.00 0.00 5.69
5565 5990 1.302192 ACAGTTTACCGCACCGCAT 60.302 52.632 0.00 0.00 0.00 4.73
5566 5991 1.134487 CAGTTTACCGCACCGCATG 59.866 57.895 0.00 0.00 0.00 4.06
5597 6022 4.398358 CGTAGTCCAGTTAACCATCTCTGA 59.602 45.833 0.88 0.00 0.00 3.27
5830 6313 0.257039 ACTGCTATGCCCAGGAAAGG 59.743 55.000 0.00 0.00 34.65 3.11
6010 6496 5.635417 AGCTTTGCTGGTCTTTAGAAATC 57.365 39.130 0.00 0.00 37.57 2.17
6025 6511 0.936691 AAATCCCTCTCCAATGGGGG 59.063 55.000 0.00 2.03 43.51 5.40
6058 6547 3.526931 TGCAAGAGTAGATAGGCACAC 57.473 47.619 0.00 0.00 0.00 3.82
6062 6551 4.261825 GCAAGAGTAGATAGGCACACTAGG 60.262 50.000 0.00 0.00 34.56 3.02
6121 6610 2.557452 GCTCTTCCCAAATCCCCAGAAA 60.557 50.000 0.00 0.00 0.00 2.52
6139 6628 5.160641 CAGAAACGGAATTTAATGGGTGTG 58.839 41.667 0.00 0.00 0.00 3.82
6292 6783 1.353103 CTGTGCCATCGAATTCGCC 59.647 57.895 22.90 11.04 39.60 5.54
6300 6791 2.031683 CCATCGAATTCGCCTTGTAACC 59.968 50.000 22.90 0.00 39.60 2.85
6308 6799 2.799017 TCGCCTTGTAACCTCTGACTA 58.201 47.619 0.00 0.00 0.00 2.59
6314 6805 7.450634 TCGCCTTGTAACCTCTGACTATATTAT 59.549 37.037 0.00 0.00 0.00 1.28
6315 6806 8.088981 CGCCTTGTAACCTCTGACTATATTATT 58.911 37.037 0.00 0.00 0.00 1.40
6387 6878 3.020984 TGTTTTCACACTCCCCAAGTTC 58.979 45.455 0.00 0.00 35.45 3.01
6479 7032 0.174845 TTATGAACGTCCCTCGCCAG 59.825 55.000 0.00 0.00 44.19 4.85
6480 7033 2.292794 TATGAACGTCCCTCGCCAGC 62.293 60.000 0.00 0.00 44.19 4.85
6545 7099 5.947663 TCAACAACCCAGGAAGAAGAAATA 58.052 37.500 0.00 0.00 0.00 1.40
6607 7161 6.530019 TTATATGAGTGACTTGAGTGAGCA 57.470 37.500 0.00 0.00 0.00 4.26
6674 8493 8.754991 TCTGAAATTTTACTTGGTTCCAACTA 57.245 30.769 0.00 0.00 0.00 2.24
6703 8522 9.813446 AAAGATACTACTACTTATTTTGGGACG 57.187 33.333 0.00 0.00 0.00 4.79
6704 8523 7.949434 AGATACTACTACTTATTTTGGGACGG 58.051 38.462 0.00 0.00 0.00 4.79
6705 8524 7.781693 AGATACTACTACTTATTTTGGGACGGA 59.218 37.037 0.00 0.00 0.00 4.69
6706 8525 6.218108 ACTACTACTTATTTTGGGACGGAG 57.782 41.667 0.00 0.00 0.00 4.63
6707 8526 4.482952 ACTACTTATTTTGGGACGGAGG 57.517 45.455 0.00 0.00 0.00 4.30
6708 8527 2.801077 ACTTATTTTGGGACGGAGGG 57.199 50.000 0.00 0.00 0.00 4.30
6709 8528 2.271777 ACTTATTTTGGGACGGAGGGA 58.728 47.619 0.00 0.00 0.00 4.20
6710 8529 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
6711 8530 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
6712 8531 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
6713 8532 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
6722 8541 4.831710 GGACGGAGGGAGTACTATTTATGT 59.168 45.833 0.00 0.00 0.00 2.29
6750 8569 6.287525 TGATGTGACATTTGTGAGAAGTACA 58.712 36.000 0.00 0.00 0.00 2.90
6751 8570 6.936335 TGATGTGACATTTGTGAGAAGTACAT 59.064 34.615 0.00 0.00 0.00 2.29
6752 8571 8.093927 TGATGTGACATTTGTGAGAAGTACATA 58.906 33.333 0.00 0.00 0.00 2.29
6753 8572 9.102757 GATGTGACATTTGTGAGAAGTACATAT 57.897 33.333 0.00 0.00 0.00 1.78
6754 8573 8.255394 TGTGACATTTGTGAGAAGTACATATG 57.745 34.615 0.00 0.00 40.77 1.78
6755 8574 8.093927 TGTGACATTTGTGAGAAGTACATATGA 58.906 33.333 10.38 0.00 38.76 2.15
6860 8679 6.139048 TGACATTGGAAATACATCAGCATG 57.861 37.500 0.00 0.00 35.92 4.06
6864 8683 4.374843 TGGAAATACATCAGCATGCAAC 57.625 40.909 21.98 0.00 34.76 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 115 2.544359 CGTGTCGCACTCAAACCG 59.456 61.111 8.07 0.00 31.34 4.44
134 148 1.576421 GGAAAGCAACACTGAGCCG 59.424 57.895 0.00 0.00 0.00 5.52
163 177 0.595095 GATCCTTTCCATGCGATGCC 59.405 55.000 0.00 0.00 0.00 4.40
199 216 4.683334 GCAACTGGCAACCGCGAC 62.683 66.667 8.23 0.00 43.97 5.19
226 243 2.584143 CGCGTCCGACCCATTACC 60.584 66.667 0.00 0.00 36.29 2.85
342 373 2.184322 CCACGGTCTGGTCATCGG 59.816 66.667 0.00 0.00 34.90 4.18
352 383 0.818040 AGAGGCAACAAACCACGGTC 60.818 55.000 0.00 0.00 41.41 4.79
353 384 0.818040 GAGAGGCAACAAACCACGGT 60.818 55.000 0.00 0.00 41.41 4.83
356 387 1.282875 GCGAGAGGCAACAAACCAC 59.717 57.895 0.00 0.00 42.87 4.16
357 388 3.744559 GCGAGAGGCAACAAACCA 58.255 55.556 0.00 0.00 42.87 3.67
375 406 0.607620 AAATCAAACACCCATGGCCG 59.392 50.000 6.09 1.02 0.00 6.13
377 408 2.038295 TGGAAAATCAAACACCCATGGC 59.962 45.455 6.09 0.00 0.00 4.40
378 409 3.324556 AGTGGAAAATCAAACACCCATGG 59.675 43.478 4.14 4.14 34.50 3.66
379 410 4.309099 CAGTGGAAAATCAAACACCCATG 58.691 43.478 0.00 0.00 34.50 3.66
380 411 3.244181 GCAGTGGAAAATCAAACACCCAT 60.244 43.478 0.00 0.00 34.50 4.00
383 414 3.733443 AGCAGTGGAAAATCAAACACC 57.267 42.857 0.00 0.00 34.50 4.16
384 415 7.437862 TGAAAATAGCAGTGGAAAATCAAACAC 59.562 33.333 0.00 0.00 0.00 3.32
385 416 7.495901 TGAAAATAGCAGTGGAAAATCAAACA 58.504 30.769 0.00 0.00 0.00 2.83
386 417 7.653311 ACTGAAAATAGCAGTGGAAAATCAAAC 59.347 33.333 0.00 0.00 44.39 2.93
390 421 7.475840 CCTACTGAAAATAGCAGTGGAAAATC 58.524 38.462 8.40 0.00 44.60 2.17
391 422 6.127619 GCCTACTGAAAATAGCAGTGGAAAAT 60.128 38.462 8.40 0.00 44.60 1.82
392 423 5.183140 GCCTACTGAAAATAGCAGTGGAAAA 59.817 40.000 8.40 0.00 44.60 2.29
393 424 4.700213 GCCTACTGAAAATAGCAGTGGAAA 59.300 41.667 8.40 0.00 44.60 3.13
394 425 4.019321 AGCCTACTGAAAATAGCAGTGGAA 60.019 41.667 8.40 0.00 44.60 3.53
395 426 3.519510 AGCCTACTGAAAATAGCAGTGGA 59.480 43.478 8.40 0.00 44.60 4.02
411 443 3.403038 ACACTGACATGTTTCAGCCTAC 58.597 45.455 13.08 0.00 46.09 3.18
412 444 3.769739 ACACTGACATGTTTCAGCCTA 57.230 42.857 13.08 0.00 46.09 3.93
415 447 4.752101 AGTTCTACACTGACATGTTTCAGC 59.248 41.667 13.08 0.00 46.09 4.26
419 451 5.227908 CGGTAGTTCTACACTGACATGTTT 58.772 41.667 0.00 0.00 35.97 2.83
421 453 3.367087 GCGGTAGTTCTACACTGACATGT 60.367 47.826 0.00 0.00 35.97 3.21
423 455 2.165845 GGCGGTAGTTCTACACTGACAT 59.834 50.000 11.34 0.00 35.97 3.06
424 456 1.542915 GGCGGTAGTTCTACACTGACA 59.457 52.381 11.34 0.00 35.97 3.58
425 457 1.467035 CGGCGGTAGTTCTACACTGAC 60.467 57.143 0.00 3.07 35.97 3.51
426 458 0.806868 CGGCGGTAGTTCTACACTGA 59.193 55.000 0.00 0.00 35.97 3.41
427 459 0.801067 GCGGCGGTAGTTCTACACTG 60.801 60.000 9.78 8.75 35.97 3.66
428 460 1.509923 GCGGCGGTAGTTCTACACT 59.490 57.895 9.78 0.00 39.87 3.55
431 463 1.870901 CACGCGGCGGTAGTTCTAC 60.871 63.158 27.37 1.76 0.00 2.59
432 464 1.024046 TACACGCGGCGGTAGTTCTA 61.024 55.000 27.37 4.70 0.00 2.10
433 465 1.865788 TTACACGCGGCGGTAGTTCT 61.866 55.000 27.37 0.00 0.00 3.01
434 466 1.444212 TTACACGCGGCGGTAGTTC 60.444 57.895 27.37 0.00 0.00 3.01
435 467 1.734117 GTTACACGCGGCGGTAGTT 60.734 57.895 27.37 1.27 0.00 2.24
436 468 2.126346 GTTACACGCGGCGGTAGT 60.126 61.111 27.37 22.11 0.00 2.73
437 469 2.126385 TGTTACACGCGGCGGTAG 60.126 61.111 27.37 17.62 0.00 3.18
438 470 1.581727 TAGTGTTACACGCGGCGGTA 61.582 55.000 27.37 20.89 39.64 4.02
439 471 2.419057 TTAGTGTTACACGCGGCGGT 62.419 55.000 27.37 21.89 39.64 5.68
440 472 1.079875 ATTAGTGTTACACGCGGCGG 61.080 55.000 27.37 17.33 39.64 6.13
442 474 1.589779 GGTATTAGTGTTACACGCGGC 59.410 52.381 12.47 1.35 39.64 6.53
443 475 2.855963 CAGGTATTAGTGTTACACGCGG 59.144 50.000 12.47 1.27 39.64 6.46
444 476 2.280708 GCAGGTATTAGTGTTACACGCG 59.719 50.000 3.53 3.53 39.64 6.01
446 478 5.888105 AGTAGCAGGTATTAGTGTTACACG 58.112 41.667 10.00 0.00 39.64 4.49
448 480 5.066893 CGGAGTAGCAGGTATTAGTGTTACA 59.933 44.000 0.00 0.00 33.97 2.41
449 481 5.067023 ACGGAGTAGCAGGTATTAGTGTTAC 59.933 44.000 0.00 0.00 41.94 2.50
450 482 5.195940 ACGGAGTAGCAGGTATTAGTGTTA 58.804 41.667 0.00 0.00 41.94 2.41
451 483 4.021916 ACGGAGTAGCAGGTATTAGTGTT 58.978 43.478 0.00 0.00 41.94 3.32
470 502 3.267483 ACAGTTAATTTGGATCGGACGG 58.733 45.455 0.00 0.00 0.00 4.79
472 504 3.242316 GCGACAGTTAATTTGGATCGGAC 60.242 47.826 0.00 0.00 0.00 4.79
477 509 3.347216 AGCTGCGACAGTTAATTTGGAT 58.653 40.909 8.32 0.00 33.43 3.41
478 510 2.742053 GAGCTGCGACAGTTAATTTGGA 59.258 45.455 0.00 0.00 33.43 3.53
488 520 2.162608 ACTTGTACTAGAGCTGCGACAG 59.837 50.000 11.43 2.92 34.12 3.51
496 528 4.334759 TCGACCATGTACTTGTACTAGAGC 59.665 45.833 11.43 4.05 0.00 4.09
503 535 5.105513 ACATCACATCGACCATGTACTTGTA 60.106 40.000 7.86 0.00 44.60 2.41
504 536 3.953712 TCACATCGACCATGTACTTGT 57.046 42.857 7.86 0.00 44.60 3.16
505 537 4.183865 ACATCACATCGACCATGTACTTG 58.816 43.478 1.78 1.78 44.60 3.16
506 538 4.433615 GACATCACATCGACCATGTACTT 58.566 43.478 0.00 0.00 44.60 2.24
511 543 1.202405 TCGGACATCACATCGACCATG 60.202 52.381 0.00 0.00 38.64 3.66
512 544 1.067669 CTCGGACATCACATCGACCAT 59.932 52.381 0.00 0.00 0.00 3.55
513 545 0.455815 CTCGGACATCACATCGACCA 59.544 55.000 0.00 0.00 0.00 4.02
514 546 0.249073 CCTCGGACATCACATCGACC 60.249 60.000 0.00 0.00 0.00 4.79
515 547 0.738975 TCCTCGGACATCACATCGAC 59.261 55.000 0.00 0.00 0.00 4.20
517 549 1.025041 TCTCCTCGGACATCACATCG 58.975 55.000 0.00 0.00 0.00 3.84
518 550 2.625314 TCATCTCCTCGGACATCACATC 59.375 50.000 0.00 0.00 0.00 3.06
519 551 2.670939 TCATCTCCTCGGACATCACAT 58.329 47.619 0.00 0.00 0.00 3.21
521 553 3.742433 AATCATCTCCTCGGACATCAC 57.258 47.619 0.00 0.00 0.00 3.06
522 554 4.039245 GGTTAATCATCTCCTCGGACATCA 59.961 45.833 0.00 0.00 0.00 3.07
523 555 4.039245 TGGTTAATCATCTCCTCGGACATC 59.961 45.833 0.00 0.00 0.00 3.06
525 557 3.371034 TGGTTAATCATCTCCTCGGACA 58.629 45.455 0.00 0.00 0.00 4.02
526 558 4.561105 GATGGTTAATCATCTCCTCGGAC 58.439 47.826 19.53 0.00 40.12 4.79
528 560 3.005897 ACGATGGTTAATCATCTCCTCGG 59.994 47.826 23.04 11.14 40.85 4.63
530 562 8.608844 AAAATACGATGGTTAATCATCTCCTC 57.391 34.615 23.04 2.07 40.85 3.71
531 563 7.661847 GGAAAATACGATGGTTAATCATCTCCT 59.338 37.037 23.04 10.30 40.85 3.69
533 565 7.510630 CGGAAAATACGATGGTTAATCATCTC 58.489 38.462 23.04 13.82 40.85 2.75
535 567 6.077838 GCGGAAAATACGATGGTTAATCATC 58.922 40.000 17.32 17.32 39.93 2.92
536 568 5.529430 TGCGGAAAATACGATGGTTAATCAT 59.471 36.000 0.00 0.00 34.68 2.45
537 569 4.876679 TGCGGAAAATACGATGGTTAATCA 59.123 37.500 0.00 0.00 34.68 2.57
538 570 5.202640 GTGCGGAAAATACGATGGTTAATC 58.797 41.667 0.00 0.00 0.00 1.75
539 571 4.636648 TGTGCGGAAAATACGATGGTTAAT 59.363 37.500 0.00 0.00 0.00 1.40
544 576 1.735018 TGTGTGCGGAAAATACGATGG 59.265 47.619 0.00 0.00 0.00 3.51
549 581 2.032302 TGTGTGTGTGTGCGGAAAATAC 59.968 45.455 0.00 0.00 0.00 1.89
551 583 1.098869 TGTGTGTGTGTGCGGAAAAT 58.901 45.000 0.00 0.00 0.00 1.82
554 586 0.675208 AGTTGTGTGTGTGTGCGGAA 60.675 50.000 0.00 0.00 0.00 4.30
556 588 1.062365 CAGTTGTGTGTGTGTGCGG 59.938 57.895 0.00 0.00 0.00 5.69
558 590 1.268032 GCTACAGTTGTGTGTGTGTGC 60.268 52.381 0.00 0.00 37.52 4.57
560 592 1.209504 AGGCTACAGTTGTGTGTGTGT 59.790 47.619 0.00 0.00 37.52 3.72
563 595 0.588252 GCAGGCTACAGTTGTGTGTG 59.412 55.000 0.00 0.00 37.52 3.82
564 596 0.535102 GGCAGGCTACAGTTGTGTGT 60.535 55.000 0.00 0.00 37.52 3.72
565 597 1.237285 GGGCAGGCTACAGTTGTGTG 61.237 60.000 0.00 0.00 37.52 3.82
566 598 1.073199 GGGCAGGCTACAGTTGTGT 59.927 57.895 0.00 0.00 41.06 3.72
567 599 1.073025 TGGGCAGGCTACAGTTGTG 59.927 57.895 0.00 0.00 0.00 3.33
568 600 1.073199 GTGGGCAGGCTACAGTTGT 59.927 57.895 5.50 0.00 0.00 3.32
570 602 1.715019 TTGGTGGGCAGGCTACAGTT 61.715 55.000 12.78 0.00 0.00 3.16
571 603 2.129555 CTTGGTGGGCAGGCTACAGT 62.130 60.000 12.78 0.00 0.00 3.55
572 604 1.377725 CTTGGTGGGCAGGCTACAG 60.378 63.158 12.78 0.00 0.00 2.74
573 605 1.841302 CTCTTGGTGGGCAGGCTACA 61.841 60.000 12.78 0.00 0.00 2.74
574 606 1.078143 CTCTTGGTGGGCAGGCTAC 60.078 63.158 1.20 1.20 0.00 3.58
575 607 1.229496 TCTCTTGGTGGGCAGGCTA 60.229 57.895 0.00 0.00 0.00 3.93
576 608 2.530151 TCTCTTGGTGGGCAGGCT 60.530 61.111 0.00 0.00 0.00 4.58
583 615 0.038310 GGTTTCCCCTCTCTTGGTGG 59.962 60.000 0.00 0.00 0.00 4.61
584 616 3.652581 GGTTTCCCCTCTCTTGGTG 57.347 57.895 0.00 0.00 0.00 4.17
596 628 4.217510 TGGATGATGATTGATGGGTTTCC 58.782 43.478 0.00 0.00 0.00 3.13
598 630 4.836736 GGATGGATGATGATTGATGGGTTT 59.163 41.667 0.00 0.00 0.00 3.27
599 631 4.140876 TGGATGGATGATGATTGATGGGTT 60.141 41.667 0.00 0.00 0.00 4.11
600 632 3.399983 TGGATGGATGATGATTGATGGGT 59.600 43.478 0.00 0.00 0.00 4.51
605 768 2.784682 TGGGTGGATGGATGATGATTGA 59.215 45.455 0.00 0.00 0.00 2.57
610 773 3.076621 CGTAATGGGTGGATGGATGATG 58.923 50.000 0.00 0.00 0.00 3.07
615 778 0.843309 ATGCGTAATGGGTGGATGGA 59.157 50.000 0.00 0.00 0.00 3.41
623 786 1.447317 GGTGCCAGATGCGTAATGGG 61.447 60.000 10.79 0.00 45.60 4.00
625 788 1.311859 ATGGTGCCAGATGCGTAATG 58.688 50.000 0.00 0.00 45.60 1.90
627 790 2.700722 TTATGGTGCCAGATGCGTAA 57.299 45.000 0.00 0.00 45.60 3.18
648 818 2.202946 GCTCTAGGGCGGTGCTTC 60.203 66.667 0.00 0.00 0.00 3.86
668 838 5.339875 CGTGTACTACTACGCATGATTGATC 59.660 44.000 0.00 0.00 33.57 2.92
690 862 0.107831 TCACTGGTTTAAGGCTGCGT 59.892 50.000 0.00 0.00 0.00 5.24
735 908 0.168348 GAGAACTGCTGCATGTGCTG 59.832 55.000 14.75 14.44 42.66 4.41
736 909 0.959372 GGAGAACTGCTGCATGTGCT 60.959 55.000 1.31 7.60 42.66 4.40
737 910 0.959372 AGGAGAACTGCTGCATGTGC 60.959 55.000 1.31 2.38 37.43 4.57
738 911 0.803117 CAGGAGAACTGCTGCATGTG 59.197 55.000 1.31 0.00 41.92 3.21
739 912 3.244764 CAGGAGAACTGCTGCATGT 57.755 52.632 1.31 0.47 41.92 3.21
782 955 2.578495 CGCGACCCATTCTACGTATAC 58.422 52.381 0.00 0.00 0.00 1.47
783 956 1.069022 GCGCGACCCATTCTACGTATA 60.069 52.381 12.10 0.00 0.00 1.47
784 957 0.318445 GCGCGACCCATTCTACGTAT 60.318 55.000 12.10 0.00 0.00 3.06
785 958 1.064621 GCGCGACCCATTCTACGTA 59.935 57.895 12.10 0.00 0.00 3.57
786 959 2.202703 GCGCGACCCATTCTACGT 60.203 61.111 12.10 0.00 0.00 3.57
787 960 2.960129 GGCGCGACCCATTCTACG 60.960 66.667 12.10 0.00 0.00 3.51
822 1010 1.340114 GCTTCTGGACTACTTTGGGGG 60.340 57.143 0.00 0.00 0.00 5.40
849 1037 1.258676 CGAGGGAGGAATAGTAGGCC 58.741 60.000 0.00 0.00 0.00 5.19
852 1040 5.231702 ACTAGACGAGGGAGGAATAGTAG 57.768 47.826 0.00 0.00 0.00 2.57
867 1081 1.548719 TGTCAATGTGGGGACTAGACG 59.451 52.381 0.00 0.00 35.11 4.18
869 1083 2.301870 GTGTGTCAATGTGGGGACTAGA 59.698 50.000 0.00 0.00 35.11 2.43
991 1216 4.962836 GGGGGCCATGGATGAGCG 62.963 72.222 18.40 0.00 0.00 5.03
1345 1579 2.174349 CAACAAGAAGCCGCGAGC 59.826 61.111 8.23 9.98 44.25 5.03
1346 1580 2.174349 GCAACAAGAAGCCGCGAG 59.826 61.111 8.23 0.00 0.00 5.03
1349 1583 2.010817 CAACGCAACAAGAAGCCGC 61.011 57.895 0.00 0.00 0.00 6.53
1350 1584 2.010817 GCAACGCAACAAGAAGCCG 61.011 57.895 0.00 0.00 0.00 5.52
1351 1585 0.527385 TTGCAACGCAACAAGAAGCC 60.527 50.000 0.00 0.00 43.99 4.35
1352 1586 0.848305 CTTGCAACGCAACAAGAAGC 59.152 50.000 0.00 0.00 43.99 3.86
1353 1587 2.193306 ACTTGCAACGCAACAAGAAG 57.807 45.000 16.10 0.00 43.99 2.85
1354 1588 2.257894 CAACTTGCAACGCAACAAGAA 58.742 42.857 16.10 0.00 43.99 2.52
1355 1589 1.201181 ACAACTTGCAACGCAACAAGA 59.799 42.857 16.10 0.00 43.99 3.02
1356 1590 1.627879 ACAACTTGCAACGCAACAAG 58.372 45.000 0.00 9.58 43.99 3.16
1357 1591 2.917971 GTTACAACTTGCAACGCAACAA 59.082 40.909 0.00 0.00 43.99 2.83
1358 1592 2.520979 GTTACAACTTGCAACGCAACA 58.479 42.857 0.00 0.00 43.99 3.33
1359 1593 1.849829 GGTTACAACTTGCAACGCAAC 59.150 47.619 0.00 0.00 43.99 4.17
1360 1594 1.202313 GGGTTACAACTTGCAACGCAA 60.202 47.619 14.19 0.92 46.80 4.85
1361 1595 0.382515 GGGTTACAACTTGCAACGCA 59.617 50.000 14.19 0.00 36.79 5.24
1362 1596 0.659123 CGGGTTACAACTTGCAACGC 60.659 55.000 10.53 10.53 34.43 4.84
1363 1597 0.658897 ACGGGTTACAACTTGCAACG 59.341 50.000 0.00 0.00 0.00 4.10
1364 1598 1.402613 ACACGGGTTACAACTTGCAAC 59.597 47.619 0.00 0.00 0.00 4.17
1365 1599 1.402259 CACACGGGTTACAACTTGCAA 59.598 47.619 0.00 0.00 0.00 4.08
1366 1600 1.018148 CACACGGGTTACAACTTGCA 58.982 50.000 0.00 0.00 0.00 4.08
1367 1601 0.309612 CCACACGGGTTACAACTTGC 59.690 55.000 0.00 0.00 0.00 4.01
1368 1602 0.309612 GCCACACGGGTTACAACTTG 59.690 55.000 0.00 0.00 39.65 3.16
1369 1603 1.161563 CGCCACACGGGTTACAACTT 61.162 55.000 0.00 0.00 39.65 2.66
1370 1604 1.595929 CGCCACACGGGTTACAACT 60.596 57.895 0.00 0.00 39.65 3.16
1437 1671 2.125350 GTCTCCTTGAGCGCCAGG 60.125 66.667 2.29 7.79 0.00 4.45
1456 1690 0.537188 AGGAACATGCCGTACCTGAG 59.463 55.000 0.00 0.00 0.00 3.35
1527 1761 3.373565 GACCTTTTGCGGCCCCAG 61.374 66.667 0.00 0.00 0.00 4.45
1557 1797 1.608717 GACAGCGGGGTGTGAGAGAT 61.609 60.000 8.41 0.00 0.00 2.75
1580 1820 8.643324 GGCTGGTAGTAGTAGTAGTAGTACTTA 58.357 40.741 23.88 13.42 41.00 2.24
1581 1821 7.126421 TGGCTGGTAGTAGTAGTAGTAGTACTT 59.874 40.741 23.88 8.38 41.00 2.24
1583 1823 6.821388 TGGCTGGTAGTAGTAGTAGTAGTAC 58.179 44.000 16.92 16.92 35.87 2.73
1591 1831 3.011482 AGGAACTGGCTGGTAGTAGTAGT 59.989 47.826 0.00 0.00 37.18 2.73
1592 1832 3.633065 GAGGAACTGGCTGGTAGTAGTAG 59.367 52.174 0.00 0.00 41.55 2.57
1593 1833 3.626729 GGAGGAACTGGCTGGTAGTAGTA 60.627 52.174 0.00 0.00 41.55 1.82
1594 1834 2.458620 GAGGAACTGGCTGGTAGTAGT 58.541 52.381 0.00 0.00 41.55 2.73
1595 1835 1.757699 GGAGGAACTGGCTGGTAGTAG 59.242 57.143 0.00 0.00 41.55 2.57
1596 1836 1.621622 GGGAGGAACTGGCTGGTAGTA 60.622 57.143 0.00 0.00 41.55 1.82
1597 1837 0.910088 GGGAGGAACTGGCTGGTAGT 60.910 60.000 0.00 0.00 41.55 2.73
1598 1838 0.618968 AGGGAGGAACTGGCTGGTAG 60.619 60.000 0.00 0.00 41.55 3.18
1599 1839 0.909610 CAGGGAGGAACTGGCTGGTA 60.910 60.000 0.00 0.00 41.55 3.25
1600 1840 2.208349 AGGGAGGAACTGGCTGGT 59.792 61.111 0.00 0.00 41.55 4.00
1601 1841 2.190488 GACAGGGAGGAACTGGCTGG 62.190 65.000 0.00 0.00 41.55 4.85
1602 1842 1.298014 GACAGGGAGGAACTGGCTG 59.702 63.158 0.00 0.00 41.55 4.85
1603 1843 1.920835 GGACAGGGAGGAACTGGCT 60.921 63.158 0.00 0.00 43.59 4.75
1604 1844 0.617820 TAGGACAGGGAGGAACTGGC 60.618 60.000 0.00 0.00 41.55 4.85
1605 1845 2.182516 ATAGGACAGGGAGGAACTGG 57.817 55.000 0.00 0.00 41.55 4.00
1606 1846 5.896073 ATAAATAGGACAGGGAGGAACTG 57.104 43.478 0.00 0.00 41.55 3.16
1611 1851 5.280215 CCTTGCTATAAATAGGACAGGGAGG 60.280 48.000 0.00 0.00 31.72 4.30
1617 1857 3.719479 TGGCCCTTGCTATAAATAGGACA 59.281 43.478 0.00 0.00 37.74 4.02
1618 1858 4.367039 TGGCCCTTGCTATAAATAGGAC 57.633 45.455 0.00 0.00 37.74 3.85
1629 1869 1.039233 CCAAATCGATGGCCCTTGCT 61.039 55.000 0.00 0.00 37.74 3.91
1637 1877 4.155826 TCTTTGTTACAGCCAAATCGATGG 59.844 41.667 0.00 0.00 43.70 3.51
1638 1878 5.295431 TCTTTGTTACAGCCAAATCGATG 57.705 39.130 0.00 0.00 31.85 3.84
1639 1879 5.163622 CCATCTTTGTTACAGCCAAATCGAT 60.164 40.000 0.00 0.00 31.85 3.59
1640 1880 4.155826 CCATCTTTGTTACAGCCAAATCGA 59.844 41.667 0.00 0.00 31.85 3.59
1641 1881 4.082787 ACCATCTTTGTTACAGCCAAATCG 60.083 41.667 0.00 0.00 31.85 3.34
1642 1882 5.163513 CACCATCTTTGTTACAGCCAAATC 58.836 41.667 0.00 0.00 31.85 2.17
1643 1883 4.021192 CCACCATCTTTGTTACAGCCAAAT 60.021 41.667 0.00 0.00 31.85 2.32
1644 1884 3.320541 CCACCATCTTTGTTACAGCCAAA 59.679 43.478 0.00 0.00 0.00 3.28
1645 1885 2.890311 CCACCATCTTTGTTACAGCCAA 59.110 45.455 0.00 0.00 0.00 4.52
1646 1886 2.513753 CCACCATCTTTGTTACAGCCA 58.486 47.619 0.00 0.00 0.00 4.75
1647 1887 1.818674 CCCACCATCTTTGTTACAGCC 59.181 52.381 0.00 0.00 0.00 4.85
1648 1888 1.202348 GCCCACCATCTTTGTTACAGC 59.798 52.381 0.00 0.00 0.00 4.40
1649 1889 1.468520 CGCCCACCATCTTTGTTACAG 59.531 52.381 0.00 0.00 0.00 2.74
1650 1890 1.072489 TCGCCCACCATCTTTGTTACA 59.928 47.619 0.00 0.00 0.00 2.41
1651 1891 1.816074 TCGCCCACCATCTTTGTTAC 58.184 50.000 0.00 0.00 0.00 2.50
1652 1892 2.799126 ATCGCCCACCATCTTTGTTA 57.201 45.000 0.00 0.00 0.00 2.41
1653 1893 1.818674 GAATCGCCCACCATCTTTGTT 59.181 47.619 0.00 0.00 0.00 2.83
1654 1894 1.463674 GAATCGCCCACCATCTTTGT 58.536 50.000 0.00 0.00 0.00 2.83
1655 1895 0.740737 GGAATCGCCCACCATCTTTG 59.259 55.000 0.00 0.00 0.00 2.77
1656 1896 0.625849 AGGAATCGCCCACCATCTTT 59.374 50.000 0.00 0.00 37.37 2.52
1671 1930 9.034800 AGGCAATTATTACTTCAAATCAAGGAA 57.965 29.630 0.00 0.00 30.47 3.36
1684 1943 4.335594 GCAAAGACGGAGGCAATTATTACT 59.664 41.667 0.00 0.00 0.00 2.24
1685 1944 4.335594 AGCAAAGACGGAGGCAATTATTAC 59.664 41.667 0.00 0.00 0.00 1.89
1701 1960 2.232756 TACACGCAACTCAGCAAAGA 57.767 45.000 0.00 0.00 0.00 2.52
1708 1967 3.437395 ACACTGTTTTTACACGCAACTCA 59.563 39.130 0.00 0.00 0.00 3.41
1738 1998 2.530701 TCCTCCTGTCCTTCAAGAGTC 58.469 52.381 0.00 0.00 33.94 3.36
1753 2013 6.007703 AGACATATACTACTGCTCTTCCTCC 58.992 44.000 0.00 0.00 0.00 4.30
1768 2028 7.258441 TGAGCAGTCAGTAACAAGACATATAC 58.742 38.462 0.00 0.00 37.23 1.47
1769 2029 7.404671 TGAGCAGTCAGTAACAAGACATATA 57.595 36.000 0.00 0.00 37.23 0.86
1770 2030 6.286240 TGAGCAGTCAGTAACAAGACATAT 57.714 37.500 0.00 0.00 37.23 1.78
1776 2036 8.032952 TGAAAATATGAGCAGTCAGTAACAAG 57.967 34.615 0.00 0.00 35.66 3.16
1858 2118 2.287909 GCTTGCAATTGACGGTACCAAA 60.288 45.455 13.54 3.32 0.00 3.28
1884 2144 3.588955 GCCCTGACCAAAAATAAGCAAG 58.411 45.455 0.00 0.00 0.00 4.01
1978 2238 5.123979 GGAGGAAGTAAAAACGAGCAATCAT 59.876 40.000 0.00 0.00 0.00 2.45
1979 2239 4.454504 GGAGGAAGTAAAAACGAGCAATCA 59.545 41.667 0.00 0.00 0.00 2.57
1987 2247 2.676342 CCGGATGGAGGAAGTAAAAACG 59.324 50.000 0.00 0.00 37.49 3.60
1988 2248 3.014623 CCCGGATGGAGGAAGTAAAAAC 58.985 50.000 0.73 0.00 37.49 2.43
2002 2262 2.552373 GGGAGGCTAATAAACCCGGATG 60.552 54.545 0.73 0.00 0.00 3.51
2003 2263 1.703513 GGGAGGCTAATAAACCCGGAT 59.296 52.381 0.73 0.00 0.00 4.18
2007 2267 2.508300 TGTGAGGGAGGCTAATAAACCC 59.492 50.000 0.00 0.00 40.71 4.11
2095 2362 1.070134 TGTGAACTGAAACGGAGGGAG 59.930 52.381 0.00 0.00 0.00 4.30
2096 2363 1.124780 TGTGAACTGAAACGGAGGGA 58.875 50.000 0.00 0.00 0.00 4.20
2097 2364 1.873591 CTTGTGAACTGAAACGGAGGG 59.126 52.381 0.00 0.00 0.00 4.30
2098 2365 2.544267 GACTTGTGAACTGAAACGGAGG 59.456 50.000 0.00 0.00 0.00 4.30
2099 2366 2.544267 GGACTTGTGAACTGAAACGGAG 59.456 50.000 0.00 0.00 0.00 4.63
2100 2367 2.169769 AGGACTTGTGAACTGAAACGGA 59.830 45.455 0.00 0.00 0.00 4.69
2101 2368 2.287915 CAGGACTTGTGAACTGAAACGG 59.712 50.000 0.00 0.00 32.86 4.44
2102 2369 2.286418 GCAGGACTTGTGAACTGAAACG 60.286 50.000 0.00 0.00 32.86 3.60
2103 2370 2.682856 TGCAGGACTTGTGAACTGAAAC 59.317 45.455 0.00 0.00 32.86 2.78
2104 2371 2.682856 GTGCAGGACTTGTGAACTGAAA 59.317 45.455 0.00 0.00 32.86 2.69
2105 2372 2.288666 GTGCAGGACTTGTGAACTGAA 58.711 47.619 0.00 0.00 32.86 3.02
2106 2373 1.806247 CGTGCAGGACTTGTGAACTGA 60.806 52.381 0.00 0.00 32.86 3.41
2107 2374 0.583438 CGTGCAGGACTTGTGAACTG 59.417 55.000 0.00 0.00 0.00 3.16
2108 2375 0.178068 ACGTGCAGGACTTGTGAACT 59.822 50.000 14.38 0.00 0.00 3.01
2109 2376 1.860676 TACGTGCAGGACTTGTGAAC 58.139 50.000 14.38 0.00 0.00 3.18
2110 2377 2.412870 CATACGTGCAGGACTTGTGAA 58.587 47.619 14.38 0.00 0.00 3.18
2111 2378 2.078849 CATACGTGCAGGACTTGTGA 57.921 50.000 14.38 0.00 0.00 3.58
2123 2390 1.732941 TGGCAACCTAAGCATACGTG 58.267 50.000 0.00 0.00 0.00 4.49
2124 2391 2.483014 TTGGCAACCTAAGCATACGT 57.517 45.000 0.00 0.00 0.00 3.57
2125 2392 4.370364 AAATTGGCAACCTAAGCATACG 57.630 40.909 0.00 0.00 0.00 3.06
2126 2393 7.435192 GTGATAAAATTGGCAACCTAAGCATAC 59.565 37.037 0.00 0.00 0.00 2.39
2127 2394 7.417342 GGTGATAAAATTGGCAACCTAAGCATA 60.417 37.037 0.00 0.00 0.00 3.14
2128 2395 6.340522 GTGATAAAATTGGCAACCTAAGCAT 58.659 36.000 0.00 0.00 0.00 3.79
2129 2396 5.337169 GGTGATAAAATTGGCAACCTAAGCA 60.337 40.000 0.00 0.00 0.00 3.91
2130 2397 5.109210 GGTGATAAAATTGGCAACCTAAGC 58.891 41.667 0.00 0.00 0.00 3.09
2131 2398 5.422012 AGGGTGATAAAATTGGCAACCTAAG 59.578 40.000 0.00 0.00 46.13 2.18
2132 2399 5.337788 AGGGTGATAAAATTGGCAACCTAA 58.662 37.500 0.00 0.00 46.13 2.69
2133 2400 4.941713 AGGGTGATAAAATTGGCAACCTA 58.058 39.130 0.00 0.00 46.13 3.08
2134 2401 3.790126 AGGGTGATAAAATTGGCAACCT 58.210 40.909 0.00 0.00 43.35 3.50
2135 2402 5.669164 TTAGGGTGATAAAATTGGCAACC 57.331 39.130 0.00 0.00 38.39 3.77
2184 2451 9.136323 ACTTCAGATGTTCTATTTTCAAAAGGT 57.864 29.630 0.00 0.00 0.00 3.50
2185 2452 9.971922 AACTTCAGATGTTCTATTTTCAAAAGG 57.028 29.630 0.00 0.00 0.00 3.11
2234 2501 9.872721 TTTGACCAACGTAATACAAGTCATATA 57.127 29.630 0.00 0.00 33.21 0.86
2235 2502 8.780846 TTTGACCAACGTAATACAAGTCATAT 57.219 30.769 0.00 0.00 33.21 1.78
2236 2503 8.780846 ATTTGACCAACGTAATACAAGTCATA 57.219 30.769 0.00 0.00 33.21 2.15
2237 2504 7.681939 ATTTGACCAACGTAATACAAGTCAT 57.318 32.000 0.00 0.00 33.21 3.06
2238 2505 7.226918 TCAATTTGACCAACGTAATACAAGTCA 59.773 33.333 0.00 0.00 0.00 3.41
2239 2506 7.532884 GTCAATTTGACCAACGTAATACAAGTC 59.467 37.037 17.07 0.00 41.37 3.01
2240 2507 7.357303 GTCAATTTGACCAACGTAATACAAGT 58.643 34.615 17.07 0.00 41.37 3.16
2241 2508 6.518395 CGTCAATTTGACCAACGTAATACAAG 59.482 38.462 20.87 1.46 44.20 3.16
2242 2509 6.202379 TCGTCAATTTGACCAACGTAATACAA 59.798 34.615 20.87 0.00 44.20 2.41
2243 2510 5.695363 TCGTCAATTTGACCAACGTAATACA 59.305 36.000 20.87 0.00 44.20 2.29
2244 2511 6.155691 TCGTCAATTTGACCAACGTAATAC 57.844 37.500 20.87 0.00 44.20 1.89
2245 2512 6.814644 AGATCGTCAATTTGACCAACGTAATA 59.185 34.615 20.87 0.00 44.20 0.98
2246 2513 5.642063 AGATCGTCAATTTGACCAACGTAAT 59.358 36.000 20.87 3.81 44.20 1.89
2247 2514 4.992319 AGATCGTCAATTTGACCAACGTAA 59.008 37.500 20.87 0.00 44.20 3.18
2248 2515 4.562082 AGATCGTCAATTTGACCAACGTA 58.438 39.130 20.87 3.68 44.20 3.57
2249 2516 3.399330 AGATCGTCAATTTGACCAACGT 58.601 40.909 20.87 5.50 44.20 3.99
2250 2517 4.032900 CCTAGATCGTCAATTTGACCAACG 59.967 45.833 20.87 11.84 44.20 4.10
2251 2518 4.332819 CCCTAGATCGTCAATTTGACCAAC 59.667 45.833 20.87 9.60 44.20 3.77
2252 2519 4.513442 CCCTAGATCGTCAATTTGACCAA 58.487 43.478 20.87 11.64 44.20 3.67
2253 2520 3.118408 CCCCTAGATCGTCAATTTGACCA 60.118 47.826 20.87 11.17 44.20 4.02
2254 2521 3.118371 ACCCCTAGATCGTCAATTTGACC 60.118 47.826 20.87 9.44 44.20 4.02
2255 2522 4.138487 ACCCCTAGATCGTCAATTTGAC 57.862 45.455 17.76 17.76 43.65 3.18
2256 2523 4.202080 CGTACCCCTAGATCGTCAATTTGA 60.202 45.833 0.00 0.00 0.00 2.69
2257 2524 4.049186 CGTACCCCTAGATCGTCAATTTG 58.951 47.826 0.00 0.00 0.00 2.32
2258 2525 3.492137 GCGTACCCCTAGATCGTCAATTT 60.492 47.826 0.00 0.00 0.00 1.82
2259 2526 2.035576 GCGTACCCCTAGATCGTCAATT 59.964 50.000 0.00 0.00 0.00 2.32
2260 2527 1.612463 GCGTACCCCTAGATCGTCAAT 59.388 52.381 0.00 0.00 0.00 2.57
2261 2528 1.027357 GCGTACCCCTAGATCGTCAA 58.973 55.000 0.00 0.00 0.00 3.18
2262 2529 1.162181 CGCGTACCCCTAGATCGTCA 61.162 60.000 0.00 0.00 0.00 4.35
2263 2530 1.573436 CGCGTACCCCTAGATCGTC 59.427 63.158 0.00 0.00 0.00 4.20
2264 2531 2.550101 GCGCGTACCCCTAGATCGT 61.550 63.158 8.43 0.00 0.00 3.73
2265 2532 2.254651 GCGCGTACCCCTAGATCG 59.745 66.667 8.43 0.00 0.00 3.69
2266 2533 1.007618 GTGCGCGTACCCCTAGATC 60.008 63.158 17.10 0.00 0.00 2.75
2267 2534 2.842256 CGTGCGCGTACCCCTAGAT 61.842 63.158 21.71 0.00 0.00 1.98
2268 2535 3.511595 CGTGCGCGTACCCCTAGA 61.512 66.667 21.71 0.00 0.00 2.43
2275 2542 4.781959 TACAGGGCGTGCGCGTAC 62.782 66.667 22.18 17.94 43.06 3.67
2276 2543 3.570621 TTTACAGGGCGTGCGCGTA 62.571 57.895 22.18 0.00 43.06 4.42
2277 2544 4.973055 TTTACAGGGCGTGCGCGT 62.973 61.111 22.18 2.94 43.06 6.01
2278 2545 4.439472 GTTTACAGGGCGTGCGCG 62.439 66.667 16.86 16.86 43.06 6.86
2279 2546 3.047877 AGTTTACAGGGCGTGCGC 61.048 61.111 7.17 8.17 41.06 6.09
2280 2547 1.626654 CTCAGTTTACAGGGCGTGCG 61.627 60.000 7.17 0.00 0.00 5.34
2281 2548 0.320421 TCTCAGTTTACAGGGCGTGC 60.320 55.000 7.17 0.00 0.00 5.34
2282 2549 1.272490 TCTCTCAGTTTACAGGGCGTG 59.728 52.381 5.50 5.50 0.00 5.34
2283 2550 1.546476 CTCTCTCAGTTTACAGGGCGT 59.454 52.381 0.00 0.00 0.00 5.68
2284 2551 1.819288 TCTCTCTCAGTTTACAGGGCG 59.181 52.381 0.00 0.00 0.00 6.13
2285 2552 2.167487 CCTCTCTCTCAGTTTACAGGGC 59.833 54.545 0.00 0.00 0.00 5.19
2286 2553 2.763448 CCCTCTCTCTCAGTTTACAGGG 59.237 54.545 0.00 0.00 33.59 4.45
2287 2554 3.699038 CTCCCTCTCTCTCAGTTTACAGG 59.301 52.174 0.00 0.00 0.00 4.00
2288 2555 4.340617 ACTCCCTCTCTCTCAGTTTACAG 58.659 47.826 0.00 0.00 0.00 2.74
2289 2556 4.390129 ACTCCCTCTCTCTCAGTTTACA 57.610 45.455 0.00 0.00 0.00 2.41
2290 2557 6.038936 GTGATACTCCCTCTCTCTCAGTTTAC 59.961 46.154 0.00 0.00 0.00 2.01
2291 2558 6.069323 AGTGATACTCCCTCTCTCTCAGTTTA 60.069 42.308 0.00 0.00 0.00 2.01
2292 2559 4.953579 GTGATACTCCCTCTCTCTCAGTTT 59.046 45.833 0.00 0.00 0.00 2.66
2293 2560 4.229582 AGTGATACTCCCTCTCTCTCAGTT 59.770 45.833 0.00 0.00 0.00 3.16
2294 2561 3.785887 AGTGATACTCCCTCTCTCTCAGT 59.214 47.826 0.00 0.00 0.00 3.41
2295 2562 4.136796 CAGTGATACTCCCTCTCTCTCAG 58.863 52.174 0.00 0.00 0.00 3.35
2296 2563 3.783082 TCAGTGATACTCCCTCTCTCTCA 59.217 47.826 0.00 0.00 0.00 3.27
2297 2564 4.431416 TCAGTGATACTCCCTCTCTCTC 57.569 50.000 0.00 0.00 0.00 3.20
2298 2565 4.871871 TTCAGTGATACTCCCTCTCTCT 57.128 45.455 0.00 0.00 0.00 3.10
2299 2566 5.420739 AGTTTTCAGTGATACTCCCTCTCTC 59.579 44.000 0.00 0.00 0.00 3.20
2300 2567 5.337788 AGTTTTCAGTGATACTCCCTCTCT 58.662 41.667 0.00 0.00 0.00 3.10
2301 2568 5.669164 AGTTTTCAGTGATACTCCCTCTC 57.331 43.478 0.00 0.00 0.00 3.20
2302 2569 5.782845 AGAAGTTTTCAGTGATACTCCCTCT 59.217 40.000 8.41 6.06 0.00 3.69
2303 2570 6.043854 AGAAGTTTTCAGTGATACTCCCTC 57.956 41.667 8.41 4.32 0.00 4.30
2304 2571 6.441088 AAGAAGTTTTCAGTGATACTCCCT 57.559 37.500 8.41 6.82 0.00 4.20
2305 2572 6.710744 TGAAAGAAGTTTTCAGTGATACTCCC 59.289 38.462 8.41 5.16 33.90 4.30
2306 2573 7.730364 TGAAAGAAGTTTTCAGTGATACTCC 57.270 36.000 8.41 0.00 33.90 3.85
2311 2578 8.836413 TCGTATTTGAAAGAAGTTTTCAGTGAT 58.164 29.630 0.00 2.95 39.30 3.06
2418 2686 2.195922 CGTTCGGGTTTATTAGGTCCG 58.804 52.381 0.00 0.00 41.80 4.79
2598 2872 4.414337 TTTTGGGTTAGCAAGCAACATT 57.586 36.364 0.00 0.00 0.00 2.71
2692 2966 6.603095 GGAAGCCGTATTGATTCATCATAAC 58.397 40.000 0.00 0.00 36.56 1.89
2786 3078 2.561478 TCCCAAGGGAAGTTTCGAAG 57.439 50.000 5.09 0.00 42.05 3.79
2894 3186 9.725019 GGAAATGTGGGATATTTTCTTCTTTTT 57.275 29.630 0.00 0.00 0.00 1.94
2899 3191 9.671279 AAATTGGAAATGTGGGATATTTTCTTC 57.329 29.630 0.00 0.00 0.00 2.87
2902 3194 9.447157 TGAAAATTGGAAATGTGGGATATTTTC 57.553 29.630 0.00 0.00 39.43 2.29
2910 3203 4.990426 GTCACTGAAAATTGGAAATGTGGG 59.010 41.667 0.00 0.00 0.00 4.61
2936 3229 4.562757 GGCATGTGTGTAGAAACCTGACTA 60.563 45.833 0.00 0.00 0.00 2.59
3009 3302 6.956299 ACTTTGTAACGCTTATGTCGTATT 57.044 33.333 0.00 0.00 39.48 1.89
3015 3308 7.148306 CCCTTCATAACTTTGTAACGCTTATGT 60.148 37.037 0.00 0.00 0.00 2.29
3045 3338 1.519751 AATGCGTTTTGTAGCGGCCA 61.520 50.000 2.24 0.00 35.87 5.36
3048 3341 2.096169 TGTGTAATGCGTTTTGTAGCGG 60.096 45.455 0.00 0.00 35.87 5.52
3052 3345 9.517609 AAGTTTAAATGTGTAATGCGTTTTGTA 57.482 25.926 0.00 0.00 0.00 2.41
3112 3416 4.446371 GACAGTGTGGAAGATAGAATGGG 58.554 47.826 0.00 0.00 0.00 4.00
3118 3422 5.413309 AAGAAGGACAGTGTGGAAGATAG 57.587 43.478 0.00 0.00 0.00 2.08
3547 3866 1.227943 GCGCAATAGGGCCATCAGA 60.228 57.895 6.18 0.00 46.99 3.27
3724 4046 8.790718 TCTCAAGAGGATTTTGAAAATTCAGAG 58.209 33.333 11.26 12.42 38.61 3.35
3741 4063 5.409826 GTCACAAACAAGGTATCTCAAGAGG 59.590 44.000 0.00 0.00 0.00 3.69
3812 4134 6.257849 TCACTGAAGAATGACACAACTGTTAC 59.742 38.462 0.00 0.00 0.00 2.50
3918 4241 6.127925 GCATTCCAATGAGACATTAGTGAACA 60.128 38.462 3.35 0.00 38.70 3.18
3937 4260 7.648908 TCATTTGAATTGAATACGATGCATTCC 59.351 33.333 0.00 0.00 32.46 3.01
3998 4321 5.690865 TCAAAACTGACCCTATTGTTGACT 58.309 37.500 0.00 0.00 0.00 3.41
4068 4394 7.630242 TTCCATGTCTCAAATATTTGGACTC 57.370 36.000 29.55 19.20 38.27 3.36
4109 4435 9.799106 CATTCTTACATTTATATTCCAGTCCCT 57.201 33.333 0.00 0.00 0.00 4.20
4275 4601 7.226441 TCACTATTCCCACATCCTATTGAATG 58.774 38.462 0.00 0.00 0.00 2.67
4387 4713 1.355381 ACTGATCCTTTCCACCATGCA 59.645 47.619 0.00 0.00 0.00 3.96
4570 4991 9.522804 GACACAACATGTTATAAACAAAGGAAA 57.477 29.630 11.53 0.00 45.86 3.13
4582 5004 5.334319 CAATCATGCGACACAACATGTTAT 58.666 37.500 11.53 0.00 43.56 1.89
4729 5153 9.237187 GAAGAGATTAGATGAAGGAAAAGGTTT 57.763 33.333 0.00 0.00 0.00 3.27
4868 5292 2.002586 CGATGAACTACAAGTGCAGGG 58.997 52.381 0.00 0.00 37.15 4.45
4925 5349 4.209452 AGCAACGTAACATGTCAGTTTG 57.791 40.909 0.00 2.42 33.07 2.93
4940 5364 4.337763 GCTCTTCACAAATATGAGCAACG 58.662 43.478 8.19 0.00 46.41 4.10
5180 5605 2.027469 ACCCAATAAGGAGTCGTTGTCC 60.027 50.000 8.32 0.00 41.22 4.02
5194 5619 5.839063 AGCTATGCTAGAGTTGTACCCAATA 59.161 40.000 0.00 0.00 36.99 1.90
5295 5720 4.527509 TGCTGTTCCTAGAAGACTCTTG 57.472 45.455 0.00 0.00 32.70 3.02
5375 5800 5.716228 TCTTGATACGACAAGTTAGGGGTTA 59.284 40.000 16.16 0.00 44.96 2.85
5404 5829 1.523938 GGAGGTTGGCGCTACATCC 60.524 63.158 23.52 23.52 39.03 3.51
5445 5870 7.929941 AGCCCTAAAATAGAGAAAGAAACAG 57.070 36.000 0.00 0.00 0.00 3.16
5463 5888 0.255890 GGAAGCATGTCCAAGCCCTA 59.744 55.000 0.00 0.00 37.65 3.53
5597 6022 5.355350 GCCACATCAAAGCAAGTTAGTATCT 59.645 40.000 0.00 0.00 0.00 1.98
5737 6163 1.565759 TGCAATATTGGAGGGCAGAGT 59.434 47.619 17.02 0.00 0.00 3.24
5830 6313 0.109913 ACTTGGACCGGAAAACCTCC 59.890 55.000 9.46 3.46 41.40 4.30
5985 6471 4.617253 TCTAAAGACCAGCAAAGCTACA 57.383 40.909 0.00 0.00 36.40 2.74
6010 6496 1.307647 CAACCCCCATTGGAGAGGG 59.692 63.158 12.60 12.60 45.75 4.30
6025 6511 5.926542 TCTACTCTTGCACTAACATCACAAC 59.073 40.000 0.00 0.00 0.00 3.32
6058 6547 0.824759 AGCTACAAGAACCCGCCTAG 59.175 55.000 0.00 0.00 0.00 3.02
6062 6551 2.000447 CTGTAAGCTACAAGAACCCGC 59.000 52.381 0.00 0.00 38.38 6.13
6121 6610 3.757270 TGTCACACCCATTAAATTCCGT 58.243 40.909 0.00 0.00 0.00 4.69
6228 6719 6.439375 TCTCAGGCAGTATAAAGAGGTACAAA 59.561 38.462 0.00 0.00 0.00 2.83
6358 6849 4.499696 GGGGAGTGTGAAAACACAATTCTG 60.500 45.833 11.26 0.00 42.68 3.02
6359 6850 3.636764 GGGGAGTGTGAAAACACAATTCT 59.363 43.478 11.26 1.51 42.68 2.40
6377 6868 3.117888 GCCAATAGATCAGAACTTGGGGA 60.118 47.826 0.00 0.00 37.44 4.81
6387 6878 7.230108 ACCTGATTATTTGTGCCAATAGATCAG 59.770 37.037 16.85 16.85 38.30 2.90
6495 7049 2.159310 CGAGAGCCGAACTTCTTCTGAT 60.159 50.000 0.00 0.00 41.76 2.90
6502 7056 2.946703 GCTACGAGAGCCGAACTTC 58.053 57.895 3.11 0.00 46.41 3.01
6578 7132 9.408648 TCACTCAAGTCACTCATATAATCTGTA 57.591 33.333 0.00 0.00 0.00 2.74
6584 7138 6.153510 AGTGCTCACTCAAGTCACTCATATAA 59.846 38.462 0.00 0.00 36.92 0.98
6687 8506 3.453353 TCCCTCCGTCCCAAAATAAGTAG 59.547 47.826 0.00 0.00 0.00 2.57
6688 8507 3.452878 TCCCTCCGTCCCAAAATAAGTA 58.547 45.455 0.00 0.00 0.00 2.24
6689 8508 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
6690 8509 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
6691 8510 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
6692 8511 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
6693 8512 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
6694 8513 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
6695 8514 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
6696 8515 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
6697 8516 1.229131 ATAGTACTCCCTCCGTCCCA 58.771 55.000 0.00 0.00 0.00 4.37
6698 8517 2.378378 AATAGTACTCCCTCCGTCCC 57.622 55.000 0.00 0.00 0.00 4.46
6699 8518 4.831710 ACATAAATAGTACTCCCTCCGTCC 59.168 45.833 0.00 0.00 0.00 4.79
6700 8519 7.516198 TTACATAAATAGTACTCCCTCCGTC 57.484 40.000 0.00 0.00 0.00 4.79
6701 8520 7.902920 TTTACATAAATAGTACTCCCTCCGT 57.097 36.000 0.00 0.00 0.00 4.69
6702 8521 8.582437 TCATTTACATAAATAGTACTCCCTCCG 58.418 37.037 0.00 0.00 34.36 4.63
6722 8541 8.394971 ACTTCTCACAAATGTCACATCATTTA 57.605 30.769 0.00 0.00 43.37 1.40
6844 8663 3.382546 AGGTTGCATGCTGATGTATTTCC 59.617 43.478 20.33 3.53 31.50 3.13
6854 8673 4.022676 TGCATATTGATAGGTTGCATGCTG 60.023 41.667 20.33 4.79 38.32 4.41
6855 8674 4.146564 TGCATATTGATAGGTTGCATGCT 58.853 39.130 20.33 0.00 38.32 3.79
6860 8679 9.003658 ACTTAAGTATGCATATTGATAGGTTGC 57.996 33.333 10.16 0.00 0.00 4.17
6946 8765 3.921119 TCATGTCAATGCCACTTCAAC 57.079 42.857 0.00 0.00 33.47 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.