Multiple sequence alignment - TraesCS4B01G305900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G305900 chr4B 100.000 4924 0 0 1 4924 594849384 594844461 0.000000e+00 9094.0
1 TraesCS4B01G305900 chr4B 93.578 109 5 2 4620 4726 562057989 562057881 1.420000e-35 161.0
2 TraesCS4B01G305900 chr4A 87.545 2770 151 79 524 3186 679260304 679257622 0.000000e+00 3025.0
3 TraesCS4B01G305900 chr4A 90.240 707 53 10 3365 4059 679257547 679256845 0.000000e+00 909.0
4 TraesCS4B01G305900 chr4A 85.650 446 32 15 7 429 679260740 679260304 1.630000e-119 440.0
5 TraesCS4B01G305900 chr4A 88.991 218 19 4 4592 4808 679256643 679256430 1.050000e-66 265.0
6 TraesCS4B01G305900 chr4A 85.246 183 23 3 4345 4524 679256834 679256653 8.420000e-43 185.0
7 TraesCS4B01G305900 chr4D 88.473 2403 145 55 952 3296 472491213 472488885 0.000000e+00 2782.0
8 TraesCS4B01G305900 chr4D 90.434 1129 70 21 3435 4556 472488793 472487696 0.000000e+00 1452.0
9 TraesCS4B01G305900 chr4D 85.190 736 62 24 3821 4514 30898232 30897502 0.000000e+00 712.0
10 TraesCS4B01G305900 chr4D 88.723 470 30 10 484 946 472491718 472491265 2.000000e-153 553.0
11 TraesCS4B01G305900 chr4D 82.249 507 28 16 35 504 472492120 472491639 1.000000e-101 381.0
12 TraesCS4B01G305900 chr4D 87.025 316 14 7 3431 3738 30898556 30898260 1.020000e-86 331.0
13 TraesCS4B01G305900 chr4D 85.824 261 22 7 4561 4809 472487608 472487351 3.780000e-66 263.0
14 TraesCS4B01G305900 chr4D 85.659 258 25 10 1419 1669 30903226 30902974 1.360000e-65 261.0
15 TraesCS4B01G305900 chr4D 89.756 205 17 2 4605 4809 30897396 30897196 4.890000e-65 259.0
16 TraesCS4B01G305900 chr4D 84.483 116 12 5 3181 3296 30898751 30898642 5.210000e-20 110.0
17 TraesCS4B01G305900 chr7D 92.165 1838 81 25 952 2738 78420239 78418414 0.000000e+00 2538.0
18 TraesCS4B01G305900 chr7D 90.071 1128 74 21 3435 4556 78417819 78416724 0.000000e+00 1428.0
19 TraesCS4B01G305900 chr7D 89.149 470 32 10 484 946 78420748 78420291 7.150000e-158 568.0
20 TraesCS4B01G305900 chr7D 81.495 535 39 27 2780 3296 78418403 78417911 7.730000e-103 385.0
21 TraesCS4B01G305900 chr7D 81.176 510 29 19 35 504 78421151 78420669 1.010000e-91 348.0
22 TraesCS4B01G305900 chr7D 87.383 214 18 4 4561 4765 78416636 78416423 2.290000e-58 237.0
23 TraesCS4B01G305900 chr7D 100.000 33 0 0 7 39 78421163 78421131 1.480000e-05 62.1
24 TraesCS4B01G305900 chrUn 91.415 431 17 6 3885 4311 477287939 477288353 1.540000e-159 573.0
25 TraesCS4B01G305900 chrUn 95.652 46 2 0 4304 4349 99391342 99391297 1.900000e-09 75.0
26 TraesCS4B01G305900 chr5D 91.065 291 26 0 3446 3736 524449934 524449644 1.280000e-105 394.0
27 TraesCS4B01G305900 chr5D 95.349 43 2 0 4304 4346 542660933 542660975 8.840000e-08 69.4
28 TraesCS4B01G305900 chr5B 90.722 291 27 0 3446 3736 658925668 658925378 5.980000e-104 388.0
29 TraesCS4B01G305900 chr5B 92.308 117 9 0 4808 4924 631789294 631789410 3.050000e-37 167.0
30 TraesCS4B01G305900 chr5A 90.722 291 27 0 3446 3736 650649432 650649142 5.980000e-104 388.0
31 TraesCS4B01G305900 chr5A 94.783 115 6 0 4810 4924 692541119 692541233 3.920000e-41 180.0
32 TraesCS4B01G305900 chr5A 94.783 115 6 0 4810 4924 692547393 692547507 3.920000e-41 180.0
33 TraesCS4B01G305900 chr5A 93.478 46 3 0 4304 4349 707263780 707263735 8.840000e-08 69.4
34 TraesCS4B01G305900 chr7B 94.915 118 6 0 4807 4924 210510010 210509893 8.420000e-43 185.0
35 TraesCS4B01G305900 chr7B 92.373 118 9 0 4807 4924 210491691 210491574 8.480000e-38 169.0
36 TraesCS4B01G305900 chr1A 94.167 120 7 0 4805 4924 518022615 518022496 3.030000e-42 183.0
37 TraesCS4B01G305900 chr1A 93.220 118 8 0 4807 4924 582229053 582229170 1.820000e-39 174.0
38 TraesCS4B01G305900 chr1A 96.809 94 3 0 4628 4721 480566419 480566326 1.830000e-34 158.0
39 TraesCS4B01G305900 chr3A 93.966 116 7 0 4809 4924 689110868 689110753 5.070000e-40 176.0
40 TraesCS4B01G305900 chr3B 93.913 115 7 0 4810 4924 817034944 817034830 1.820000e-39 174.0
41 TraesCS4B01G305900 chr3B 100.000 30 0 0 4300 4329 725843491 725843520 6.890000e-04 56.5
42 TraesCS4B01G305900 chr6B 91.453 117 7 3 4611 4727 611459686 611459799 1.830000e-34 158.0
43 TraesCS4B01G305900 chr1D 94.118 102 6 0 4619 4720 379472688 379472587 6.600000e-34 156.0
44 TraesCS4B01G305900 chr2B 89.831 118 9 3 4609 4724 789687659 789687775 1.100000e-31 148.0
45 TraesCS4B01G305900 chr2B 86.726 113 13 2 4608 4720 680045842 680045952 1.860000e-24 124.0
46 TraesCS4B01G305900 chr2A 88.889 117 7 4 4610 4720 771511559 771511443 6.650000e-29 139.0
47 TraesCS4B01G305900 chr2A 85.965 114 14 2 4608 4720 706893848 706893960 2.410000e-23 121.0
48 TraesCS4B01G305900 chr3D 100.000 31 0 0 4299 4329 612886337 612886367 1.910000e-04 58.4
49 TraesCS4B01G305900 chr3D 100.000 30 0 0 4300 4329 548271344 548271373 6.890000e-04 56.5
50 TraesCS4B01G305900 chr7A 96.875 32 1 0 4301 4332 520786274 520786243 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G305900 chr4B 594844461 594849384 4923 True 9094.000000 9094 100.0000 1 4924 1 chr4B.!!$R2 4923
1 TraesCS4B01G305900 chr4A 679256430 679260740 4310 True 964.800000 3025 87.5344 7 4808 5 chr4A.!!$R1 4801
2 TraesCS4B01G305900 chr4D 472487351 472492120 4769 True 1086.200000 2782 87.1406 35 4809 5 chr4D.!!$R3 4774
3 TraesCS4B01G305900 chr4D 30897196 30898751 1555 True 353.000000 712 86.6135 3181 4809 4 chr4D.!!$R2 1628
4 TraesCS4B01G305900 chr7D 78416423 78421163 4740 True 795.157143 2538 88.7770 7 4765 7 chr7D.!!$R1 4758

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
794 851 0.029300 TTCTTCTTGTTGCAGCACGC 59.971 50.0 1.37 0.00 42.89 5.34 F
2495 2685 0.034476 ATGATCGATCGGCAGCACAT 59.966 50.0 20.03 9.05 0.00 3.21 F
2521 2711 0.097674 GTGACTGACATGGCATTCGC 59.902 55.0 15.71 15.71 37.44 4.70 F
3317 3559 0.107654 GTCGGTGGCTGCTCCTTTAT 60.108 55.0 0.00 0.00 35.26 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2705 2900 0.038526 GTCCGTTGCCGAGAGAAGAA 60.039 55.0 0.0 0.0 35.63 2.52 R
3298 3540 0.107654 ATAAAGGAGCAGCCACCGAC 60.108 55.0 0.0 0.0 40.02 4.79 R
3596 3869 0.320421 TGAGCGAGTTGTAGTTGGCC 60.320 55.0 0.0 0.0 0.00 5.36 R
4793 5213 0.392998 ACTGCTTTACCCTGATGCCG 60.393 55.0 0.0 0.0 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 2.117423 GGTTGGGTCTTGGGTGGG 59.883 66.667 0.00 0.00 0.00 4.61
41 42 2.774633 GGTTGGGTCTTGGGTGGGT 61.775 63.158 0.00 0.00 0.00 4.51
42 43 1.231928 GTTGGGTCTTGGGTGGGTT 59.768 57.895 0.00 0.00 0.00 4.11
43 44 1.112916 GTTGGGTCTTGGGTGGGTTG 61.113 60.000 0.00 0.00 0.00 3.77
44 45 1.585651 TTGGGTCTTGGGTGGGTTGT 61.586 55.000 0.00 0.00 0.00 3.32
144 149 4.150454 CCCCTCTCCCTCGCTCCT 62.150 72.222 0.00 0.00 0.00 3.69
145 150 2.520741 CCCTCTCCCTCGCTCCTC 60.521 72.222 0.00 0.00 0.00 3.71
146 151 2.520741 CCTCTCCCTCGCTCCTCC 60.521 72.222 0.00 0.00 0.00 4.30
147 152 2.520741 CTCTCCCTCGCTCCTCCC 60.521 72.222 0.00 0.00 0.00 4.30
148 153 3.024356 TCTCCCTCGCTCCTCCCT 61.024 66.667 0.00 0.00 0.00 4.20
181 186 1.813728 GCCTATAACTACCGCCCGCT 61.814 60.000 0.00 0.00 0.00 5.52
257 268 2.024871 CCTCTCGATCGACACCGC 59.975 66.667 15.15 0.00 35.37 5.68
280 291 1.153745 GGCTGACAACGAGATCGCT 60.154 57.895 1.39 0.00 44.43 4.93
307 323 2.041115 GCCGGTTCTTGCTTCCCTC 61.041 63.158 1.90 0.00 0.00 4.30
411 445 2.430465 CCAGGTTCCACATCACAGAAG 58.570 52.381 0.00 0.00 0.00 2.85
436 470 4.052159 GATGATAGTATCGATGCTGGGG 57.948 50.000 24.21 0.00 0.00 4.96
437 471 2.889512 TGATAGTATCGATGCTGGGGT 58.110 47.619 24.21 8.85 0.00 4.95
438 472 3.239449 TGATAGTATCGATGCTGGGGTT 58.761 45.455 24.21 5.54 0.00 4.11
439 473 3.258372 TGATAGTATCGATGCTGGGGTTC 59.742 47.826 24.21 13.38 0.00 3.62
440 474 0.759346 AGTATCGATGCTGGGGTTCC 59.241 55.000 15.69 0.00 0.00 3.62
441 475 0.600255 GTATCGATGCTGGGGTTCCG 60.600 60.000 8.54 0.00 35.24 4.30
442 476 1.754380 TATCGATGCTGGGGTTCCGG 61.754 60.000 8.54 0.00 42.40 5.14
443 477 4.856801 CGATGCTGGGGTTCCGGG 62.857 72.222 0.00 0.00 39.84 5.73
444 478 4.506255 GATGCTGGGGTTCCGGGG 62.506 72.222 0.00 0.00 39.84 5.73
448 482 3.400054 CTGGGGTTCCGGGGACTC 61.400 72.222 5.23 0.00 35.76 3.36
451 485 3.400054 GGGTTCCGGGGACTCCAG 61.400 72.222 5.23 0.00 34.36 3.86
452 486 2.606826 GGTTCCGGGGACTCCAGT 60.607 66.667 5.23 0.00 34.36 4.00
453 487 2.663196 GTTCCGGGGACTCCAGTG 59.337 66.667 0.00 0.00 34.36 3.66
454 488 3.319198 TTCCGGGGACTCCAGTGC 61.319 66.667 0.00 0.00 35.50 4.40
455 489 3.846405 TTCCGGGGACTCCAGTGCT 62.846 63.158 0.00 0.00 36.56 4.40
456 490 3.322466 CCGGGGACTCCAGTGCTT 61.322 66.667 0.00 0.00 36.56 3.91
457 491 2.046892 CGGGGACTCCAGTGCTTG 60.047 66.667 0.00 0.00 36.56 4.01
465 499 4.941609 CCAGTGCTTGGCTACGAT 57.058 55.556 0.00 0.00 40.87 3.73
466 500 2.682893 CCAGTGCTTGGCTACGATC 58.317 57.895 0.00 0.00 40.87 3.69
467 501 0.811616 CCAGTGCTTGGCTACGATCC 60.812 60.000 0.00 0.00 40.87 3.36
468 502 0.176680 CAGTGCTTGGCTACGATCCT 59.823 55.000 0.00 0.00 0.00 3.24
469 503 1.409064 CAGTGCTTGGCTACGATCCTA 59.591 52.381 0.00 0.00 0.00 2.94
470 504 1.409427 AGTGCTTGGCTACGATCCTAC 59.591 52.381 0.00 0.00 0.00 3.18
471 505 1.409427 GTGCTTGGCTACGATCCTACT 59.591 52.381 0.00 0.00 0.00 2.57
472 506 2.621998 GTGCTTGGCTACGATCCTACTA 59.378 50.000 0.00 0.00 0.00 1.82
473 507 2.885266 TGCTTGGCTACGATCCTACTAG 59.115 50.000 0.00 0.00 0.00 2.57
474 508 3.147629 GCTTGGCTACGATCCTACTAGA 58.852 50.000 0.00 0.00 0.00 2.43
475 509 3.759618 GCTTGGCTACGATCCTACTAGAT 59.240 47.826 0.00 0.00 0.00 1.98
476 510 4.142556 GCTTGGCTACGATCCTACTAGATC 60.143 50.000 0.00 0.00 39.47 2.75
477 511 4.635699 TGGCTACGATCCTACTAGATCA 57.364 45.455 0.00 0.00 42.40 2.92
478 512 4.981812 TGGCTACGATCCTACTAGATCAA 58.018 43.478 0.00 0.00 42.40 2.57
479 513 4.760715 TGGCTACGATCCTACTAGATCAAC 59.239 45.833 0.00 0.00 42.40 3.18
480 514 4.760715 GGCTACGATCCTACTAGATCAACA 59.239 45.833 0.00 0.00 42.40 3.33
481 515 5.335035 GGCTACGATCCTACTAGATCAACAC 60.335 48.000 0.00 0.00 42.40 3.32
482 516 5.335035 GCTACGATCCTACTAGATCAACACC 60.335 48.000 0.00 0.00 42.40 4.16
483 517 4.533815 ACGATCCTACTAGATCAACACCA 58.466 43.478 0.00 0.00 42.40 4.17
541 575 3.003378 TGTTACGATCCTAGATCAGCACG 59.997 47.826 5.51 0.00 0.00 5.34
708 744 7.338449 GGAACATAGTAGTTTTCCTGCCATTAA 59.662 37.037 0.00 0.00 35.56 1.40
749 796 2.179267 CACTACTCTGCGCTGCGA 59.821 61.111 28.07 10.07 0.00 5.10
753 800 0.368227 CTACTCTGCGCTGCGAAAAG 59.632 55.000 28.07 15.07 0.00 2.27
785 842 1.728971 CATCGCGCTCTTCTTCTTGTT 59.271 47.619 5.56 0.00 0.00 2.83
786 843 1.139989 TCGCGCTCTTCTTCTTGTTG 58.860 50.000 5.56 0.00 0.00 3.33
787 844 0.451792 CGCGCTCTTCTTCTTGTTGC 60.452 55.000 5.56 0.00 0.00 4.17
788 845 0.588252 GCGCTCTTCTTCTTGTTGCA 59.412 50.000 0.00 0.00 0.00 4.08
789 846 1.399471 GCGCTCTTCTTCTTGTTGCAG 60.399 52.381 0.00 0.00 0.00 4.41
790 847 1.399471 CGCTCTTCTTCTTGTTGCAGC 60.399 52.381 0.00 0.00 0.00 5.25
791 848 1.605710 GCTCTTCTTCTTGTTGCAGCA 59.394 47.619 0.00 0.00 0.00 4.41
792 849 2.604132 GCTCTTCTTCTTGTTGCAGCAC 60.604 50.000 1.37 0.00 0.00 4.40
793 850 1.599071 TCTTCTTCTTGTTGCAGCACG 59.401 47.619 1.37 0.75 0.00 5.34
794 851 0.029300 TTCTTCTTGTTGCAGCACGC 59.971 50.000 1.37 0.00 42.89 5.34
822 879 1.066502 GCCCTTCACTCTGGACTTCTC 60.067 57.143 0.00 0.00 0.00 2.87
946 1015 2.811799 GGCAACCACAACGCCTTT 59.188 55.556 0.00 0.00 42.78 3.11
947 1016 1.591327 GGCAACCACAACGCCTTTG 60.591 57.895 0.00 0.00 42.78 2.77
958 1073 3.108144 CAACGCCTTTGTGTTCAGAAAG 58.892 45.455 13.21 13.21 43.13 2.62
959 1074 1.065551 ACGCCTTTGTGTTCAGAAAGC 59.934 47.619 14.29 10.11 0.00 3.51
962 1077 2.735823 CCTTTGTGTTCAGAAAGCAGC 58.264 47.619 14.29 0.00 0.00 5.25
970 1085 4.207841 GTGTTCAGAAAGCAGCAATTCAAC 59.792 41.667 12.09 9.27 0.00 3.18
971 1086 3.272439 TCAGAAAGCAGCAATTCAACG 57.728 42.857 12.09 2.65 0.00 4.10
975 1090 3.188048 AGAAAGCAGCAATTCAACGAGAG 59.812 43.478 12.09 0.00 0.00 3.20
1042 1161 2.659016 CTCTGCTCGGTGGCAAGA 59.341 61.111 0.00 0.00 41.94 3.02
1060 1179 4.077822 CAAGAGCAAGAAATCCAAGGTCT 58.922 43.478 0.00 0.00 38.55 3.85
1082 1203 3.742882 TGTGCTCATCTCTCTGTTTTTCG 59.257 43.478 0.00 0.00 0.00 3.46
1165 1298 6.786207 GCTCTTTACCAAGCCTGTTAATTAG 58.214 40.000 0.00 0.00 32.22 1.73
1166 1299 6.374613 GCTCTTTACCAAGCCTGTTAATTAGT 59.625 38.462 0.00 0.00 32.22 2.24
1167 1300 7.551617 GCTCTTTACCAAGCCTGTTAATTAGTA 59.448 37.037 0.00 0.00 32.22 1.82
1168 1301 9.444600 CTCTTTACCAAGCCTGTTAATTAGTAA 57.555 33.333 0.00 0.00 0.00 2.24
1169 1302 9.223099 TCTTTACCAAGCCTGTTAATTAGTAAC 57.777 33.333 0.00 0.00 42.24 2.50
1179 1312 9.310716 GCCTGTTAATTAGTAACTAGTACTTGG 57.689 37.037 0.00 0.00 40.33 3.61
1180 1313 9.310716 CCTGTTAATTAGTAACTAGTACTTGGC 57.689 37.037 0.00 0.00 40.33 4.52
1181 1314 9.865321 CTGTTAATTAGTAACTAGTACTTGGCA 57.135 33.333 0.00 0.00 40.33 4.92
1182 1315 9.643693 TGTTAATTAGTAACTAGTACTTGGCAC 57.356 33.333 0.00 1.59 40.33 5.01
1183 1316 9.643693 GTTAATTAGTAACTAGTACTTGGCACA 57.356 33.333 0.00 0.00 40.33 4.57
1184 1317 9.643693 TTAATTAGTAACTAGTACTTGGCACAC 57.356 33.333 0.00 0.00 40.33 3.82
1205 1338 0.924777 CGTCACGTGTTTGCACTGTA 59.075 50.000 16.51 0.00 43.16 2.74
1206 1339 1.525197 CGTCACGTGTTTGCACTGTAT 59.475 47.619 16.51 0.00 43.16 2.29
1207 1340 2.033236 CGTCACGTGTTTGCACTGTATT 60.033 45.455 16.51 0.00 43.16 1.89
1208 1341 3.288242 GTCACGTGTTTGCACTGTATTG 58.712 45.455 16.51 0.00 43.16 1.90
1209 1342 2.939756 TCACGTGTTTGCACTGTATTGT 59.060 40.909 16.51 0.00 43.16 2.71
1210 1343 4.025563 GTCACGTGTTTGCACTGTATTGTA 60.026 41.667 16.51 0.00 43.16 2.41
1223 1356 6.986817 GCACTGTATTGTATTGACCTCTGTAT 59.013 38.462 0.00 0.00 0.00 2.29
1233 1366 9.599866 TGTATTGACCTCTGTATATTTCAACTG 57.400 33.333 0.00 0.00 0.00 3.16
1473 1630 2.197605 TGACGACGACAAGGCCTCA 61.198 57.895 5.23 0.00 0.00 3.86
1476 1633 2.432628 GACGACAAGGCCTCACCG 60.433 66.667 5.23 12.50 46.52 4.94
1822 1979 3.088500 GACCGCGTGATGCTGAAGC 62.089 63.158 4.92 0.00 43.27 3.86
2053 2234 4.421479 AGGAAGAGCCGACGTGCG 62.421 66.667 0.00 0.00 43.43 5.34
2457 2647 7.144000 ACTTCATCGGTAAGTAAATCGATACC 58.856 38.462 0.00 0.00 39.87 2.73
2460 2650 5.833406 TCGGTAAGTAAATCGATACCACA 57.167 39.130 12.14 0.00 38.13 4.17
2471 2661 9.740239 GTAAATCGATACCACATTTCTACACTA 57.260 33.333 0.00 0.00 0.00 2.74
2472 2662 8.873215 AAATCGATACCACATTTCTACACTAG 57.127 34.615 0.00 0.00 0.00 2.57
2474 2664 7.818997 TCGATACCACATTTCTACACTAGAT 57.181 36.000 0.00 0.00 34.22 1.98
2495 2685 0.034476 ATGATCGATCGGCAGCACAT 59.966 50.000 20.03 9.05 0.00 3.21
2499 2689 2.816360 CGATCGGCAGCACATGTGG 61.816 63.158 26.55 12.47 0.00 4.17
2514 2704 2.549064 TGTGGAAGTGACTGACATGG 57.451 50.000 0.00 0.00 0.00 3.66
2521 2711 0.097674 GTGACTGACATGGCATTCGC 59.902 55.000 15.71 15.71 37.44 4.70
2532 2722 1.011131 GCATTCGCCGGTTCGATTC 60.011 57.895 1.90 0.00 38.37 2.52
2555 2745 1.969200 ATGCAGCTCACATCTCGGCT 61.969 55.000 0.00 0.00 35.23 5.52
2693 2883 2.816083 CGCATCGGCCACGGTAAA 60.816 61.111 2.24 0.00 41.39 2.01
2698 2888 0.463116 ATCGGCCACGGTAAACCATC 60.463 55.000 2.24 0.00 41.39 3.51
2714 2909 4.195225 ACCATCTCCGTTTTCTTCTCTC 57.805 45.455 0.00 0.00 0.00 3.20
2750 2946 2.125147 CACCACCATGGATCGCGT 60.125 61.111 21.47 3.40 40.96 6.01
2752 2948 2.186644 CCACCATGGATCGCGTCA 59.813 61.111 21.47 3.85 40.96 4.35
2753 2949 1.884464 CCACCATGGATCGCGTCAG 60.884 63.158 21.47 0.00 40.96 3.51
2759 2955 2.476619 CCATGGATCGCGTCAGTTATTC 59.523 50.000 5.56 0.00 0.00 1.75
2776 2972 0.405198 TTCTGCATGCCCTTCCTTCA 59.595 50.000 16.68 0.00 0.00 3.02
2804 3002 1.733912 CCAGTACTACGTACGTGCTCA 59.266 52.381 30.25 9.86 43.05 4.26
2806 3004 1.396301 AGTACTACGTACGTGCTCAGC 59.604 52.381 30.25 14.67 43.05 4.26
2827 3025 3.878778 CTGAAAGCCAGCTATACCTTGT 58.121 45.455 0.00 0.00 35.89 3.16
2828 3026 5.023533 CTGAAAGCCAGCTATACCTTGTA 57.976 43.478 0.00 0.00 35.89 2.41
2843 3049 3.744426 ACCTTGTACGTACATTGTTCAGC 59.256 43.478 27.82 0.00 35.89 4.26
2847 3053 2.941891 ACGTACATTGTTCAGCGTTG 57.058 45.000 0.00 0.00 0.00 4.10
2859 3072 4.307908 GCGTTGCCGTGTCCACAC 62.308 66.667 0.00 0.00 43.15 3.82
2896 3109 1.269444 GGTAGCATTACGAGCGAGCG 61.269 60.000 0.00 0.00 37.01 5.03
2920 3133 1.695597 ATCTTGGCCCAGGCTAGCT 60.696 57.895 15.72 0.00 41.60 3.32
2960 3173 0.249996 GAAAGGGTGGTCCGAACGAA 60.250 55.000 0.00 0.00 41.52 3.85
2982 3195 2.492388 GCGACAGGCTATTCGTACG 58.508 57.895 9.53 9.53 37.56 3.67
3007 3220 1.496060 ATTGATGAGCGTACAGGGGA 58.504 50.000 0.00 0.00 0.00 4.81
3010 3223 0.535335 GATGAGCGTACAGGGGACAA 59.465 55.000 0.00 0.00 0.00 3.18
3011 3224 0.249398 ATGAGCGTACAGGGGACAAC 59.751 55.000 0.00 0.00 0.00 3.32
3013 3226 3.116531 GCGTACAGGGGACAACGC 61.117 66.667 2.78 2.78 46.48 4.84
3014 3227 2.340809 CGTACAGGGGACAACGCA 59.659 61.111 0.00 0.00 33.80 5.24
3015 3228 2.025418 CGTACAGGGGACAACGCAC 61.025 63.158 0.00 0.00 33.80 5.34
3016 3229 1.670083 GTACAGGGGACAACGCACC 60.670 63.158 0.00 0.00 33.80 5.01
3017 3230 2.141448 TACAGGGGACAACGCACCA 61.141 57.895 0.00 0.00 33.80 4.17
3027 3240 1.881252 AACGCACCAGTCGTGTCAC 60.881 57.895 0.00 0.00 44.97 3.67
3067 3280 2.003196 CGCTGGAAAGAACCTCTCTC 57.997 55.000 0.00 0.00 31.02 3.20
3068 3281 1.548269 CGCTGGAAAGAACCTCTCTCT 59.452 52.381 0.00 0.00 31.02 3.10
3069 3282 2.673610 CGCTGGAAAGAACCTCTCTCTG 60.674 54.545 0.00 0.00 31.02 3.35
3070 3283 2.354604 GCTGGAAAGAACCTCTCTCTGG 60.355 54.545 0.00 0.00 31.02 3.86
3071 3284 2.903135 CTGGAAAGAACCTCTCTCTGGT 59.097 50.000 0.00 0.00 39.91 4.00
3073 3286 4.489737 TGGAAAGAACCTCTCTCTGGTTA 58.510 43.478 0.00 0.00 46.59 2.85
3074 3287 4.283722 TGGAAAGAACCTCTCTCTGGTTAC 59.716 45.833 0.00 0.00 46.59 2.50
3075 3288 4.487019 GAAAGAACCTCTCTCTGGTTACG 58.513 47.826 0.00 0.00 46.59 3.18
3076 3289 2.448453 AGAACCTCTCTCTGGTTACGG 58.552 52.381 0.00 0.00 46.59 4.02
3157 3370 1.153568 CCTCGTCACCGCATCACAT 60.154 57.895 0.00 0.00 0.00 3.21
3170 3383 3.639538 GCATCACATAGTACCTGGTACG 58.360 50.000 26.59 17.23 43.05 3.67
3171 3384 3.067742 GCATCACATAGTACCTGGTACGT 59.932 47.826 26.59 17.80 43.05 3.57
3172 3385 4.441079 GCATCACATAGTACCTGGTACGTT 60.441 45.833 26.59 17.27 43.05 3.99
3173 3386 4.970662 TCACATAGTACCTGGTACGTTC 57.029 45.455 26.59 7.60 43.05 3.95
3174 3387 4.592942 TCACATAGTACCTGGTACGTTCT 58.407 43.478 26.59 14.71 43.05 3.01
3175 3388 5.744171 TCACATAGTACCTGGTACGTTCTA 58.256 41.667 26.59 16.21 43.05 2.10
3176 3389 5.819379 TCACATAGTACCTGGTACGTTCTAG 59.181 44.000 26.59 17.51 43.05 2.43
3179 3397 4.566426 AGTACCTGGTACGTTCTAGAGT 57.434 45.455 26.59 7.44 43.05 3.24
3189 3407 2.189342 CGTTCTAGAGTAGCAGCTTGC 58.811 52.381 0.00 0.00 45.46 4.01
3239 3457 1.093159 CAGCTTTGCTCATCCCAGAC 58.907 55.000 0.00 0.00 36.40 3.51
3241 3459 1.986575 GCTTTGCTCATCCCAGACGC 61.987 60.000 0.00 0.00 0.00 5.19
3243 3461 0.955428 TTTGCTCATCCCAGACGCAC 60.955 55.000 0.00 0.00 0.00 5.34
3244 3462 2.887568 GCTCATCCCAGACGCACG 60.888 66.667 0.00 0.00 0.00 5.34
3246 3464 1.807226 CTCATCCCAGACGCACGTA 59.193 57.895 0.00 0.00 0.00 3.57
3251 3469 2.452813 CCCAGACGCACGTACATGC 61.453 63.158 3.27 3.27 42.48 4.06
3260 3478 2.809181 ACGTACATGCGTGTGACTG 58.191 52.632 21.92 10.40 43.99 3.51
3261 3479 0.312729 ACGTACATGCGTGTGACTGA 59.687 50.000 21.92 0.00 43.99 3.41
3262 3480 0.708370 CGTACATGCGTGTGACTGAC 59.292 55.000 21.92 10.12 39.39 3.51
3263 3481 1.068474 GTACATGCGTGTGACTGACC 58.932 55.000 21.92 0.00 39.39 4.02
3264 3482 0.388006 TACATGCGTGTGACTGACCG 60.388 55.000 21.92 0.00 39.39 4.79
3265 3483 1.372872 CATGCGTGTGACTGACCGA 60.373 57.895 0.00 0.00 0.00 4.69
3266 3484 1.372997 ATGCGTGTGACTGACCGAC 60.373 57.895 0.00 0.00 0.00 4.79
3267 3485 1.806461 ATGCGTGTGACTGACCGACT 61.806 55.000 0.00 0.00 0.00 4.18
3268 3486 2.016704 GCGTGTGACTGACCGACTG 61.017 63.158 0.00 0.00 0.00 3.51
3269 3487 1.371758 CGTGTGACTGACCGACTGG 60.372 63.158 0.00 0.00 42.84 4.00
3270 3488 1.792118 CGTGTGACTGACCGACTGGA 61.792 60.000 0.00 0.00 39.21 3.86
3271 3489 0.318784 GTGTGACTGACCGACTGGAC 60.319 60.000 0.00 0.00 39.21 4.02
3272 3490 1.081376 GTGACTGACCGACTGGACG 60.081 63.158 0.00 0.00 39.21 4.79
3273 3491 2.126424 GACTGACCGACTGGACGC 60.126 66.667 0.00 0.00 39.21 5.19
3274 3492 2.910479 ACTGACCGACTGGACGCA 60.910 61.111 0.00 0.00 39.21 5.24
3275 3493 2.126307 CTGACCGACTGGACGCAG 60.126 66.667 0.00 0.00 39.21 5.18
3276 3494 4.357947 TGACCGACTGGACGCAGC 62.358 66.667 0.00 0.00 39.21 5.25
3298 3540 3.667282 ACGTCGTGGTCCACTCGG 61.667 66.667 27.51 16.76 36.76 4.63
3299 3541 3.667282 CGTCGTGGTCCACTCGGT 61.667 66.667 19.82 0.00 36.76 4.69
3302 3544 4.415332 CGTGGTCCACTCGGTCGG 62.415 72.222 19.82 0.00 32.77 4.79
3303 3545 3.300765 GTGGTCCACTCGGTCGGT 61.301 66.667 15.22 0.00 0.00 4.69
3304 3546 3.299977 TGGTCCACTCGGTCGGTG 61.300 66.667 0.00 5.45 34.78 4.94
3308 3550 4.742201 CCACTCGGTCGGTGGCTG 62.742 72.222 14.51 0.00 45.97 4.85
3311 3553 4.803426 CTCGGTCGGTGGCTGCTC 62.803 72.222 0.00 0.00 0.00 4.26
3314 3556 4.021925 GGTCGGTGGCTGCTCCTT 62.022 66.667 0.00 0.00 35.26 3.36
3315 3557 2.032681 GTCGGTGGCTGCTCCTTT 59.967 61.111 0.00 0.00 35.26 3.11
3316 3558 1.295423 GTCGGTGGCTGCTCCTTTA 59.705 57.895 0.00 0.00 35.26 1.85
3317 3559 0.107654 GTCGGTGGCTGCTCCTTTAT 60.108 55.000 0.00 0.00 35.26 1.40
3318 3560 0.107703 TCGGTGGCTGCTCCTTTATG 60.108 55.000 0.00 0.00 35.26 1.90
3319 3561 0.107703 CGGTGGCTGCTCCTTTATGA 60.108 55.000 0.00 0.00 35.26 2.15
3320 3562 1.673168 GGTGGCTGCTCCTTTATGAG 58.327 55.000 0.00 0.00 35.26 2.90
3331 3573 4.309099 CTCCTTTATGAGCTCATCTCTGC 58.691 47.826 31.92 0.00 42.38 4.26
3332 3574 3.708121 TCCTTTATGAGCTCATCTCTGCA 59.292 43.478 31.92 11.53 42.38 4.41
3333 3575 4.059511 CCTTTATGAGCTCATCTCTGCAG 58.940 47.826 31.92 17.84 42.38 4.41
3334 3576 4.202233 CCTTTATGAGCTCATCTCTGCAGA 60.202 45.833 31.92 17.19 42.38 4.26
3347 3589 3.509967 TCTCTGCAGATCGTCCTTTGTTA 59.490 43.478 18.63 0.00 0.00 2.41
3348 3590 4.021456 TCTCTGCAGATCGTCCTTTGTTAA 60.021 41.667 18.63 0.00 0.00 2.01
3349 3591 4.637276 TCTGCAGATCGTCCTTTGTTAAA 58.363 39.130 13.74 0.00 0.00 1.52
3350 3592 5.245531 TCTGCAGATCGTCCTTTGTTAAAT 58.754 37.500 13.74 0.00 0.00 1.40
3351 3593 5.705441 TCTGCAGATCGTCCTTTGTTAAATT 59.295 36.000 13.74 0.00 0.00 1.82
3352 3594 6.206634 TCTGCAGATCGTCCTTTGTTAAATTT 59.793 34.615 13.74 0.00 0.00 1.82
3353 3595 6.148948 TGCAGATCGTCCTTTGTTAAATTTG 58.851 36.000 0.00 0.00 0.00 2.32
3354 3596 6.149633 GCAGATCGTCCTTTGTTAAATTTGT 58.850 36.000 0.00 0.00 0.00 2.83
3355 3597 6.640907 GCAGATCGTCCTTTGTTAAATTTGTT 59.359 34.615 0.00 0.00 0.00 2.83
3356 3598 7.358352 GCAGATCGTCCTTTGTTAAATTTGTTG 60.358 37.037 0.00 0.00 0.00 3.33
3357 3599 6.640907 AGATCGTCCTTTGTTAAATTTGTTGC 59.359 34.615 0.00 0.00 0.00 4.17
3358 3600 5.897050 TCGTCCTTTGTTAAATTTGTTGCT 58.103 33.333 0.00 0.00 0.00 3.91
3359 3601 7.028926 TCGTCCTTTGTTAAATTTGTTGCTA 57.971 32.000 0.00 0.00 0.00 3.49
3382 3624 4.080129 ACCACTGCAGAATTATGATCCTGT 60.080 41.667 23.35 0.00 0.00 4.00
3400 3642 4.580167 TCCTGTCAGAATTTCACCAAACAG 59.420 41.667 0.00 4.88 34.18 3.16
3403 3647 5.890334 TGTCAGAATTTCACCAAACAGTTC 58.110 37.500 0.00 0.00 0.00 3.01
3411 3655 2.354510 TCACCAAACAGTTCGAGCTTTG 59.645 45.455 0.00 2.82 0.00 2.77
3414 3658 3.181500 ACCAAACAGTTCGAGCTTTGAAC 60.181 43.478 19.56 19.56 44.72 3.18
3420 3664 1.721926 GTTCGAGCTTTGAACCTCTCG 59.278 52.381 17.47 4.34 46.78 4.04
3425 3669 1.001406 AGCTTTGAACCTCTCGACTGG 59.999 52.381 0.00 0.00 0.00 4.00
3470 3735 4.854784 TCGAGCTGCACGGCGATC 62.855 66.667 16.62 4.88 37.29 3.69
3927 4202 2.284995 AGGCCAGGAGGTGAGACC 60.285 66.667 5.01 0.00 38.99 3.85
3954 4229 1.471684 CAAGGAGCAACTTCAGATGCC 59.528 52.381 5.51 0.00 43.71 4.40
4069 4372 2.731217 CGAAAGGTGTGCTTGGAAAAG 58.269 47.619 0.00 0.00 0.00 2.27
4072 4375 4.499696 CGAAAGGTGTGCTTGGAAAAGAAT 60.500 41.667 0.00 0.00 0.00 2.40
4173 4483 2.614057 GGATTCATGTAAGTTGCGAGGG 59.386 50.000 0.00 0.00 0.00 4.30
4192 4502 3.254903 AGGGTCGACCAAATTTGTAAAGC 59.745 43.478 34.40 13.19 43.89 3.51
4193 4503 3.571571 GGTCGACCAAATTTGTAAAGCC 58.428 45.455 29.75 9.39 35.64 4.35
4262 4576 2.851263 ATGTTGTCGTTGGCTCCTAA 57.149 45.000 0.00 0.00 0.00 2.69
4331 4645 9.595823 CTCCCTTCGTAAAGAAATATAAGAACA 57.404 33.333 0.00 0.00 38.57 3.18
4366 4680 2.409651 GGTAGAGCTCGAGTGCCG 59.590 66.667 15.13 0.00 40.25 5.69
4389 4703 2.100749 GGGAGGTTGGTTGTTCTTGTTG 59.899 50.000 0.00 0.00 0.00 3.33
4406 4720 2.159156 TGTTGGTCGAAGCGCTATGTAT 60.159 45.455 12.05 0.00 0.00 2.29
4408 4722 3.173668 TGGTCGAAGCGCTATGTATTT 57.826 42.857 12.05 0.00 0.00 1.40
4422 4736 7.410407 GCGCTATGTATTTGGTTTTCTGTTTTC 60.410 37.037 0.00 0.00 0.00 2.29
4432 4746 5.306678 TGGTTTTCTGTTTTCCCTAATGCAT 59.693 36.000 0.00 0.00 0.00 3.96
4545 4869 9.256228 AGACATTATTTTACTGAGGTAGACTGA 57.744 33.333 0.00 0.00 0.00 3.41
4552 4876 0.888619 TGAGGTAGACTGACAAGGCG 59.111 55.000 0.00 0.00 36.08 5.52
4665 5080 6.442541 TTCAAACCAGTGACCTAAGGATTA 57.557 37.500 0.00 0.00 0.00 1.75
4680 5095 7.155328 CCTAAGGATTAATCTGCAACGACTAT 58.845 38.462 14.95 0.00 0.00 2.12
4737 5152 4.897509 TGTGTTCTCAACTGGATCAGAT 57.102 40.909 1.59 0.00 35.18 2.90
4750 5166 9.887629 CAACTGGATCAGATGCTATAAATCTAT 57.112 33.333 3.27 0.00 33.03 1.98
4755 5171 8.646004 GGATCAGATGCTATAAATCTATGGCTA 58.354 37.037 0.00 0.00 41.38 3.93
4775 5191 5.243954 GGCTAAAAGGACAAAGACAGGAATT 59.756 40.000 0.00 0.00 0.00 2.17
4779 5195 4.664688 AGGACAAAGACAGGAATTCCAT 57.335 40.909 26.22 13.90 38.89 3.41
4780 5196 4.593956 AGGACAAAGACAGGAATTCCATC 58.406 43.478 26.22 21.17 38.89 3.51
4781 5197 3.696548 GGACAAAGACAGGAATTCCATCC 59.303 47.826 26.22 13.55 39.96 3.51
4782 5198 4.335416 GACAAAGACAGGAATTCCATCCA 58.665 43.478 26.22 0.00 42.27 3.41
4783 5199 4.939255 ACAAAGACAGGAATTCCATCCAT 58.061 39.130 26.22 11.85 42.27 3.41
4784 5200 4.708421 ACAAAGACAGGAATTCCATCCATG 59.292 41.667 26.22 21.94 42.27 3.66
4793 5213 6.152323 CAGGAATTCCATCCATGAACCATATC 59.848 42.308 26.22 0.00 42.27 1.63
4809 5229 2.543777 TATCGGCATCAGGGTAAAGC 57.456 50.000 0.00 0.00 0.00 3.51
4810 5230 0.546122 ATCGGCATCAGGGTAAAGCA 59.454 50.000 0.00 0.00 0.00 3.91
4811 5231 0.107703 TCGGCATCAGGGTAAAGCAG 60.108 55.000 0.00 0.00 0.00 4.24
4812 5232 0.392998 CGGCATCAGGGTAAAGCAGT 60.393 55.000 0.00 0.00 0.00 4.40
4813 5233 1.098050 GGCATCAGGGTAAAGCAGTG 58.902 55.000 0.00 0.00 0.00 3.66
4814 5234 1.098050 GCATCAGGGTAAAGCAGTGG 58.902 55.000 0.00 0.00 0.00 4.00
4815 5235 1.098050 CATCAGGGTAAAGCAGTGGC 58.902 55.000 0.00 0.00 41.61 5.01
4825 5245 4.521075 GCAGTGGCGAATCTAGCA 57.479 55.556 0.00 0.00 36.08 3.49
4826 5246 2.997899 GCAGTGGCGAATCTAGCAT 58.002 52.632 0.00 0.00 36.08 3.79
4827 5247 0.585357 GCAGTGGCGAATCTAGCATG 59.415 55.000 0.00 0.00 36.08 4.06
4828 5248 1.807755 GCAGTGGCGAATCTAGCATGA 60.808 52.381 0.00 0.00 36.08 3.07
4829 5249 2.763933 CAGTGGCGAATCTAGCATGAT 58.236 47.619 0.00 0.00 36.08 2.45
4830 5250 3.862264 GCAGTGGCGAATCTAGCATGATA 60.862 47.826 0.00 0.00 36.08 2.15
4831 5251 4.309933 CAGTGGCGAATCTAGCATGATAA 58.690 43.478 0.00 0.00 36.08 1.75
4832 5252 4.934001 CAGTGGCGAATCTAGCATGATAAT 59.066 41.667 0.00 0.00 36.08 1.28
4833 5253 4.934001 AGTGGCGAATCTAGCATGATAATG 59.066 41.667 0.00 0.00 36.08 1.90
4834 5254 4.931601 GTGGCGAATCTAGCATGATAATGA 59.068 41.667 0.00 0.00 36.08 2.57
4835 5255 5.409520 GTGGCGAATCTAGCATGATAATGAA 59.590 40.000 0.00 0.00 36.08 2.57
4836 5256 5.640783 TGGCGAATCTAGCATGATAATGAAG 59.359 40.000 0.00 0.00 36.08 3.02
4837 5257 5.871524 GGCGAATCTAGCATGATAATGAAGA 59.128 40.000 0.00 0.00 36.08 2.87
4838 5258 6.035866 GGCGAATCTAGCATGATAATGAAGAG 59.964 42.308 0.00 0.00 36.08 2.85
4839 5259 6.589523 GCGAATCTAGCATGATAATGAAGAGT 59.410 38.462 0.00 0.00 34.19 3.24
4840 5260 7.757173 GCGAATCTAGCATGATAATGAAGAGTA 59.243 37.037 0.00 0.00 34.19 2.59
4841 5261 9.288124 CGAATCTAGCATGATAATGAAGAGTAG 57.712 37.037 0.00 0.00 0.00 2.57
4842 5262 9.585099 GAATCTAGCATGATAATGAAGAGTAGG 57.415 37.037 0.00 0.00 0.00 3.18
4843 5263 6.929625 TCTAGCATGATAATGAAGAGTAGGC 58.070 40.000 0.00 0.00 0.00 3.93
4844 5264 5.822132 AGCATGATAATGAAGAGTAGGCT 57.178 39.130 0.00 0.00 0.00 4.58
4845 5265 5.792741 AGCATGATAATGAAGAGTAGGCTC 58.207 41.667 0.00 0.00 41.94 4.70
4846 5266 5.306419 AGCATGATAATGAAGAGTAGGCTCA 59.694 40.000 0.00 0.00 44.00 4.26
4847 5267 5.994054 GCATGATAATGAAGAGTAGGCTCAA 59.006 40.000 0.00 0.00 44.00 3.02
4848 5268 6.484643 GCATGATAATGAAGAGTAGGCTCAAA 59.515 38.462 0.00 0.00 44.00 2.69
4849 5269 7.519649 GCATGATAATGAAGAGTAGGCTCAAAC 60.520 40.741 0.00 0.00 44.00 2.93
4850 5270 6.946340 TGATAATGAAGAGTAGGCTCAAACA 58.054 36.000 0.00 0.00 44.00 2.83
4851 5271 7.568349 TGATAATGAAGAGTAGGCTCAAACAT 58.432 34.615 0.00 0.00 44.00 2.71
4852 5272 7.712639 TGATAATGAAGAGTAGGCTCAAACATC 59.287 37.037 0.00 0.00 44.00 3.06
4853 5273 4.890158 TGAAGAGTAGGCTCAAACATCA 57.110 40.909 0.00 0.00 44.00 3.07
4854 5274 5.227569 TGAAGAGTAGGCTCAAACATCAA 57.772 39.130 0.00 0.00 44.00 2.57
4855 5275 5.620206 TGAAGAGTAGGCTCAAACATCAAA 58.380 37.500 0.00 0.00 44.00 2.69
4856 5276 6.240894 TGAAGAGTAGGCTCAAACATCAAAT 58.759 36.000 0.00 0.00 44.00 2.32
4857 5277 6.716628 TGAAGAGTAGGCTCAAACATCAAATT 59.283 34.615 0.00 0.00 44.00 1.82
4858 5278 6.749923 AGAGTAGGCTCAAACATCAAATTC 57.250 37.500 0.00 0.00 44.00 2.17
4859 5279 6.479884 AGAGTAGGCTCAAACATCAAATTCT 58.520 36.000 0.00 0.00 44.00 2.40
4860 5280 7.624549 AGAGTAGGCTCAAACATCAAATTCTA 58.375 34.615 0.00 0.00 44.00 2.10
4861 5281 8.103305 AGAGTAGGCTCAAACATCAAATTCTAA 58.897 33.333 0.00 0.00 44.00 2.10
4862 5282 8.273780 AGTAGGCTCAAACATCAAATTCTAAG 57.726 34.615 0.00 0.00 0.00 2.18
4863 5283 5.958955 AGGCTCAAACATCAAATTCTAAGC 58.041 37.500 0.00 0.00 0.00 3.09
4864 5284 5.105063 GGCTCAAACATCAAATTCTAAGCC 58.895 41.667 0.00 0.00 38.83 4.35
4865 5285 5.105063 GCTCAAACATCAAATTCTAAGCCC 58.895 41.667 0.00 0.00 0.00 5.19
4866 5286 5.336690 GCTCAAACATCAAATTCTAAGCCCA 60.337 40.000 0.00 0.00 0.00 5.36
4867 5287 6.662865 TCAAACATCAAATTCTAAGCCCAA 57.337 33.333 0.00 0.00 0.00 4.12
4868 5288 7.243604 TCAAACATCAAATTCTAAGCCCAAT 57.756 32.000 0.00 0.00 0.00 3.16
4869 5289 7.678837 TCAAACATCAAATTCTAAGCCCAATT 58.321 30.769 0.00 0.00 0.00 2.32
4870 5290 8.811017 TCAAACATCAAATTCTAAGCCCAATTA 58.189 29.630 0.00 0.00 0.00 1.40
4871 5291 9.090692 CAAACATCAAATTCTAAGCCCAATTAG 57.909 33.333 0.00 0.00 34.63 1.73
4872 5292 6.809869 ACATCAAATTCTAAGCCCAATTAGC 58.190 36.000 0.00 0.00 33.57 3.09
4873 5293 6.380846 ACATCAAATTCTAAGCCCAATTAGCA 59.619 34.615 2.79 0.00 33.57 3.49
4874 5294 6.849085 TCAAATTCTAAGCCCAATTAGCAA 57.151 33.333 2.79 0.00 33.57 3.91
4875 5295 7.422465 TCAAATTCTAAGCCCAATTAGCAAT 57.578 32.000 2.79 0.00 33.57 3.56
4876 5296 7.850193 TCAAATTCTAAGCCCAATTAGCAATT 58.150 30.769 2.79 0.00 33.57 2.32
4877 5297 7.765360 TCAAATTCTAAGCCCAATTAGCAATTG 59.235 33.333 0.00 0.00 46.09 2.32
4878 5298 4.654091 TCTAAGCCCAATTAGCAATTGC 57.346 40.909 23.05 23.05 45.36 3.56
4879 5299 4.022603 TCTAAGCCCAATTAGCAATTGCA 58.977 39.130 30.89 13.06 45.36 4.08
4880 5300 3.918294 AAGCCCAATTAGCAATTGCAT 57.082 38.095 30.89 18.26 45.36 3.96
4881 5301 3.918294 AGCCCAATTAGCAATTGCATT 57.082 38.095 30.89 19.68 45.36 3.56
4882 5302 3.537580 AGCCCAATTAGCAATTGCATTG 58.462 40.909 30.89 27.77 45.36 2.82
4883 5303 3.054948 AGCCCAATTAGCAATTGCATTGT 60.055 39.130 30.89 13.77 45.36 2.71
4884 5304 3.064271 GCCCAATTAGCAATTGCATTGTG 59.936 43.478 30.89 22.53 45.36 3.33
4885 5305 4.505808 CCCAATTAGCAATTGCATTGTGA 58.494 39.130 30.89 8.69 45.36 3.58
4886 5306 5.120399 CCCAATTAGCAATTGCATTGTGAT 58.880 37.500 30.89 11.93 45.36 3.06
4887 5307 5.587043 CCCAATTAGCAATTGCATTGTGATT 59.413 36.000 30.89 15.67 45.36 2.57
4888 5308 6.238266 CCCAATTAGCAATTGCATTGTGATTC 60.238 38.462 30.89 0.00 45.36 2.52
4889 5309 6.537301 CCAATTAGCAATTGCATTGTGATTCT 59.463 34.615 30.89 9.74 45.36 2.40
4890 5310 7.065324 CCAATTAGCAATTGCATTGTGATTCTT 59.935 33.333 30.89 9.23 45.36 2.52
4891 5311 9.089601 CAATTAGCAATTGCATTGTGATTCTTA 57.910 29.630 30.89 8.23 45.16 2.10
4892 5312 8.638685 ATTAGCAATTGCATTGTGATTCTTAC 57.361 30.769 30.89 0.00 45.16 2.34
4893 5313 5.097529 AGCAATTGCATTGTGATTCTTACG 58.902 37.500 30.89 0.00 45.16 3.18
4894 5314 4.858692 GCAATTGCATTGTGATTCTTACGT 59.141 37.500 25.36 0.00 42.20 3.57
4895 5315 5.220080 GCAATTGCATTGTGATTCTTACGTG 60.220 40.000 25.36 0.00 42.20 4.49
4896 5316 5.627499 ATTGCATTGTGATTCTTACGTGT 57.373 34.783 0.00 0.00 0.00 4.49
4897 5317 6.735678 ATTGCATTGTGATTCTTACGTGTA 57.264 33.333 0.00 0.00 0.00 2.90
4898 5318 6.546972 TTGCATTGTGATTCTTACGTGTAA 57.453 33.333 0.00 0.00 0.00 2.41
4899 5319 6.546972 TGCATTGTGATTCTTACGTGTAAA 57.453 33.333 0.00 0.00 0.00 2.01
4900 5320 6.598525 TGCATTGTGATTCTTACGTGTAAAG 58.401 36.000 0.00 0.00 0.00 1.85
4901 5321 5.508224 GCATTGTGATTCTTACGTGTAAAGC 59.492 40.000 0.00 0.00 0.00 3.51
4902 5322 6.598525 CATTGTGATTCTTACGTGTAAAGCA 58.401 36.000 0.00 0.00 0.00 3.91
4903 5323 5.585500 TGTGATTCTTACGTGTAAAGCAC 57.415 39.130 15.56 15.56 44.36 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 2.241880 CCGACGTCACCCACACAAC 61.242 63.158 17.16 0.00 0.00 3.32
41 42 2.107343 CCGACGTCACCCACACAA 59.893 61.111 17.16 0.00 0.00 3.33
42 43 2.834043 TCCGACGTCACCCACACA 60.834 61.111 17.16 0.00 0.00 3.72
43 44 2.049433 CTCCGACGTCACCCACAC 60.049 66.667 17.16 0.00 0.00 3.82
44 45 3.299977 CCTCCGACGTCACCCACA 61.300 66.667 17.16 0.00 0.00 4.17
96 97 2.691779 GGAGGAGAGGAGGGACGGA 61.692 68.421 0.00 0.00 0.00 4.69
126 127 4.467107 GGAGCGAGGGAGAGGGGT 62.467 72.222 0.00 0.00 0.00 4.95
139 144 4.851214 AGCGAGGGAGGGAGGAGC 62.851 72.222 0.00 0.00 0.00 4.70
240 249 2.024871 GCGGTGTCGATCGAGAGG 59.975 66.667 20.09 13.10 39.00 3.69
242 251 3.515286 GGGCGGTGTCGATCGAGA 61.515 66.667 20.09 15.65 39.00 4.04
257 268 4.760047 CTCGTTGTCAGCCCCGGG 62.760 72.222 15.80 15.80 0.00 5.73
286 297 3.431725 GAAGCAAGAACCGGCGGG 61.432 66.667 31.78 13.14 40.11 6.13
307 323 1.863267 GAGATCGCCAAGGATCAGTG 58.137 55.000 5.46 0.00 44.21 3.66
345 375 3.808728 TGGCGAGAAAAATATCAGGAGG 58.191 45.455 0.00 0.00 0.00 4.30
411 445 4.346970 CAGCATCGATACTATCATCGTCC 58.653 47.826 0.00 0.00 46.21 4.79
431 465 3.400054 GAGTCCCCGGAACCCCAG 61.400 72.222 0.73 0.00 0.00 4.45
434 468 3.400054 CTGGAGTCCCCGGAACCC 61.400 72.222 0.73 5.35 44.44 4.11
435 469 2.606826 ACTGGAGTCCCCGGAACC 60.607 66.667 0.73 0.00 44.44 3.62
436 470 2.663196 CACTGGAGTCCCCGGAAC 59.337 66.667 0.73 0.00 44.44 3.62
437 471 3.319198 GCACTGGAGTCCCCGGAA 61.319 66.667 0.73 0.00 44.44 4.30
438 472 3.846405 AAGCACTGGAGTCCCCGGA 62.846 63.158 0.73 0.00 44.44 5.14
440 474 2.046892 CAAGCACTGGAGTCCCCG 60.047 66.667 6.74 0.00 37.93 5.73
449 483 0.176680 AGGATCGTAGCCAAGCACTG 59.823 55.000 0.00 0.00 0.00 3.66
450 484 1.409427 GTAGGATCGTAGCCAAGCACT 59.591 52.381 0.00 0.00 0.00 4.40
451 485 1.409427 AGTAGGATCGTAGCCAAGCAC 59.591 52.381 0.00 0.00 0.00 4.40
452 486 1.776662 AGTAGGATCGTAGCCAAGCA 58.223 50.000 0.00 0.00 0.00 3.91
453 487 3.147629 TCTAGTAGGATCGTAGCCAAGC 58.852 50.000 0.00 0.00 0.00 4.01
454 488 5.004448 TGATCTAGTAGGATCGTAGCCAAG 58.996 45.833 0.00 0.00 43.46 3.61
455 489 4.981812 TGATCTAGTAGGATCGTAGCCAA 58.018 43.478 0.00 0.00 43.46 4.52
456 490 4.635699 TGATCTAGTAGGATCGTAGCCA 57.364 45.455 0.00 0.00 43.46 4.75
457 491 4.760715 TGTTGATCTAGTAGGATCGTAGCC 59.239 45.833 0.00 0.00 43.46 3.93
458 492 5.335035 GGTGTTGATCTAGTAGGATCGTAGC 60.335 48.000 0.00 0.00 43.46 3.58
459 493 5.763698 TGGTGTTGATCTAGTAGGATCGTAG 59.236 44.000 0.00 0.00 43.46 3.51
460 494 5.687780 TGGTGTTGATCTAGTAGGATCGTA 58.312 41.667 0.00 0.00 43.46 3.43
461 495 4.533815 TGGTGTTGATCTAGTAGGATCGT 58.466 43.478 0.00 0.00 43.46 3.73
462 496 5.299531 TCTTGGTGTTGATCTAGTAGGATCG 59.700 44.000 0.00 0.00 43.46 3.69
463 497 6.716934 TCTTGGTGTTGATCTAGTAGGATC 57.283 41.667 0.00 0.70 41.59 3.36
464 498 8.964533 ATATCTTGGTGTTGATCTAGTAGGAT 57.035 34.615 0.00 0.00 0.00 3.24
465 499 8.228206 AGATATCTTGGTGTTGATCTAGTAGGA 58.772 37.037 0.00 0.00 0.00 2.94
466 500 8.415950 AGATATCTTGGTGTTGATCTAGTAGG 57.584 38.462 0.00 0.00 0.00 3.18
469 503 8.543774 ACAAAGATATCTTGGTGTTGATCTAGT 58.456 33.333 22.34 0.00 38.62 2.57
470 504 8.954950 ACAAAGATATCTTGGTGTTGATCTAG 57.045 34.615 22.34 1.22 38.62 2.43
471 505 9.383519 GAACAAAGATATCTTGGTGTTGATCTA 57.616 33.333 28.17 0.00 39.11 1.98
472 506 7.065085 CGAACAAAGATATCTTGGTGTTGATCT 59.935 37.037 28.17 13.26 39.11 2.75
473 507 7.182761 CGAACAAAGATATCTTGGTGTTGATC 58.817 38.462 28.17 19.42 39.11 2.92
474 508 6.094048 CCGAACAAAGATATCTTGGTGTTGAT 59.906 38.462 28.17 14.42 39.11 2.57
475 509 5.411361 CCGAACAAAGATATCTTGGTGTTGA 59.589 40.000 28.17 0.00 39.11 3.18
476 510 5.631026 CCGAACAAAGATATCTTGGTGTTG 58.369 41.667 28.17 20.25 39.11 3.33
477 511 4.156008 GCCGAACAAAGATATCTTGGTGTT 59.844 41.667 25.32 25.32 39.11 3.32
478 512 3.689649 GCCGAACAAAGATATCTTGGTGT 59.310 43.478 23.42 18.66 39.11 4.16
479 513 3.065371 GGCCGAACAAAGATATCTTGGTG 59.935 47.826 23.42 18.07 39.11 4.17
480 514 3.279434 GGCCGAACAAAGATATCTTGGT 58.721 45.455 18.28 18.28 41.69 3.67
481 515 3.278574 TGGCCGAACAAAGATATCTTGG 58.721 45.455 18.61 17.75 36.12 3.61
482 516 3.313526 CCTGGCCGAACAAAGATATCTTG 59.686 47.826 18.61 14.21 36.12 3.02
483 517 3.545703 CCTGGCCGAACAAAGATATCTT 58.454 45.455 12.37 12.37 37.91 2.40
541 575 4.442706 TCTGGCCGAACAAAGATATCTTC 58.557 43.478 18.19 5.33 34.61 2.87
708 744 0.587285 GTCAGTATCTCGCGATCGGT 59.413 55.000 18.30 0.00 36.13 4.69
727 766 0.457509 CAGCGCAGAGTAGTGTCCTG 60.458 60.000 11.47 0.00 0.00 3.86
749 796 3.209410 GCGATGGATGATCAGACCTTTT 58.791 45.455 18.36 7.36 0.00 2.27
753 800 1.287730 GCGCGATGGATGATCAGACC 61.288 60.000 12.10 12.93 0.00 3.85
946 1015 3.380954 TGAATTGCTGCTTTCTGAACACA 59.619 39.130 14.05 0.00 0.00 3.72
947 1016 3.968649 TGAATTGCTGCTTTCTGAACAC 58.031 40.909 14.05 0.00 0.00 3.32
949 1018 3.423206 CGTTGAATTGCTGCTTTCTGAAC 59.577 43.478 14.05 10.78 0.00 3.18
950 1019 3.314913 TCGTTGAATTGCTGCTTTCTGAA 59.685 39.130 14.05 0.00 0.00 3.02
958 1073 2.977405 AACTCTCGTTGAATTGCTGC 57.023 45.000 0.00 0.00 30.67 5.25
970 1085 0.455295 GACTCACGCCTCAACTCTCG 60.455 60.000 0.00 0.00 0.00 4.04
971 1086 0.885196 AGACTCACGCCTCAACTCTC 59.115 55.000 0.00 0.00 0.00 3.20
975 1090 1.996191 GATCAAGACTCACGCCTCAAC 59.004 52.381 0.00 0.00 0.00 3.18
1042 1161 3.152341 CACAGACCTTGGATTTCTTGCT 58.848 45.455 0.00 0.00 0.00 3.91
1060 1179 3.742882 CGAAAAACAGAGAGATGAGCACA 59.257 43.478 0.00 0.00 0.00 4.57
1165 1298 4.164294 CGAGTGTGCCAAGTACTAGTTAC 58.836 47.826 0.00 0.00 0.00 2.50
1166 1299 3.822735 ACGAGTGTGCCAAGTACTAGTTA 59.177 43.478 0.00 0.00 27.99 2.24
1167 1300 2.626743 ACGAGTGTGCCAAGTACTAGTT 59.373 45.455 0.00 0.00 27.99 2.24
1168 1301 2.228343 GACGAGTGTGCCAAGTACTAGT 59.772 50.000 0.00 0.00 33.86 2.57
1169 1302 2.228103 TGACGAGTGTGCCAAGTACTAG 59.772 50.000 0.00 0.00 0.00 2.57
1176 1309 1.880796 CACGTGACGAGTGTGCCAA 60.881 57.895 13.70 0.00 35.08 4.52
1182 1315 0.315059 GTGCAAACACGTGACGAGTG 60.315 55.000 25.01 12.67 44.57 3.51
1183 1316 2.003672 GTGCAAACACGTGACGAGT 58.996 52.632 25.01 7.24 36.98 4.18
1184 1317 4.872476 GTGCAAACACGTGACGAG 57.128 55.556 25.01 6.39 36.98 4.18
1207 1340 9.599866 CAGTTGAAATATACAGAGGTCAATACA 57.400 33.333 0.00 0.00 0.00 2.29
1208 1341 9.601217 ACAGTTGAAATATACAGAGGTCAATAC 57.399 33.333 0.00 0.00 0.00 1.89
1210 1343 9.823647 CTACAGTTGAAATATACAGAGGTCAAT 57.176 33.333 0.00 0.00 0.00 2.57
1256 1389 1.745115 ACACGCCATGGATTGACCG 60.745 57.895 18.40 10.98 42.61 4.79
1294 1427 2.168054 CCCTTTTGGCGTACGGAAG 58.832 57.895 18.39 0.00 38.58 3.46
1822 1979 4.135153 CTGGCTGGACGACCTCCG 62.135 72.222 5.33 0.00 43.03 4.63
1917 2074 2.045926 AAGGTGCTCGATGTGGCC 60.046 61.111 0.00 0.00 0.00 5.36
1959 2116 4.735132 TACCCGTCGTGCTGCTGC 62.735 66.667 8.89 8.89 40.20 5.25
2163 2347 1.150536 CTCCTCCTCCTCCTCCTCG 59.849 68.421 0.00 0.00 0.00 4.63
2457 2647 8.078596 TCGATCATCATCTAGTGTAGAAATGTG 58.921 37.037 0.00 0.00 38.50 3.21
2460 2650 8.180920 CGATCGATCATCATCTAGTGTAGAAAT 58.819 37.037 24.40 0.00 38.50 2.17
2471 2661 1.403914 GCTGCCGATCGATCATCATCT 60.404 52.381 24.40 0.00 0.00 2.90
2472 2662 0.997932 GCTGCCGATCGATCATCATC 59.002 55.000 24.40 12.74 0.00 2.92
2474 2664 0.598419 GTGCTGCCGATCGATCATCA 60.598 55.000 24.40 18.46 0.00 3.07
2495 2685 1.543208 GCCATGTCAGTCACTTCCACA 60.543 52.381 0.00 0.00 0.00 4.17
2499 2689 2.094894 CGAATGCCATGTCAGTCACTTC 59.905 50.000 4.98 0.00 31.19 3.01
2514 2704 1.011131 GAATCGAACCGGCGAATGC 60.011 57.895 9.30 0.00 44.22 3.56
2527 2717 2.175621 TGAGCTGCATGCCGAATCG 61.176 57.895 16.68 0.00 44.23 3.34
2532 2722 1.773054 GAGATGTGAGCTGCATGCCG 61.773 60.000 16.68 10.48 44.23 5.69
2693 2883 3.367498 CGAGAGAAGAAAACGGAGATGGT 60.367 47.826 0.00 0.00 0.00 3.55
2698 2888 1.336887 TGCCGAGAGAAGAAAACGGAG 60.337 52.381 0.00 0.00 45.31 4.63
2705 2900 0.038526 GTCCGTTGCCGAGAGAAGAA 60.039 55.000 0.00 0.00 35.63 2.52
2714 2909 1.714899 GGATTCATGGTCCGTTGCCG 61.715 60.000 0.00 0.00 0.00 5.69
2752 2948 2.243221 AGGAAGGGCATGCAGAATAACT 59.757 45.455 21.36 5.41 0.00 2.24
2753 2949 2.659428 AGGAAGGGCATGCAGAATAAC 58.341 47.619 21.36 0.00 0.00 1.89
2759 2955 0.323178 AGTGAAGGAAGGGCATGCAG 60.323 55.000 21.36 0.00 0.00 4.41
2806 3004 3.878778 ACAAGGTATAGCTGGCTTTCAG 58.121 45.455 4.96 0.00 46.03 3.02
2819 3017 5.579511 GCTGAACAATGTACGTACAAGGTAT 59.420 40.000 30.46 19.47 39.99 2.73
2820 3018 4.925054 GCTGAACAATGTACGTACAAGGTA 59.075 41.667 30.46 16.03 39.99 3.08
2821 3019 3.744426 GCTGAACAATGTACGTACAAGGT 59.256 43.478 30.46 25.90 39.99 3.50
2823 3021 3.427528 ACGCTGAACAATGTACGTACAAG 59.572 43.478 30.46 25.86 39.99 3.16
2825 3023 3.015934 ACGCTGAACAATGTACGTACA 57.984 42.857 29.15 29.15 40.98 2.90
2827 3025 2.156117 GCAACGCTGAACAATGTACGTA 59.844 45.455 0.00 0.00 32.76 3.57
2828 3026 1.070175 GCAACGCTGAACAATGTACGT 60.070 47.619 0.00 0.00 34.85 3.57
2871 3084 2.660552 CGTAATGCTACCGGGCGG 60.661 66.667 6.32 0.00 42.03 6.13
2872 3085 1.660575 CTCGTAATGCTACCGGGCG 60.661 63.158 6.32 0.00 34.52 6.13
2873 3086 1.954651 GCTCGTAATGCTACCGGGC 60.955 63.158 6.32 0.00 0.00 6.13
2920 3133 2.100197 CCTACTACAGTGCTGTGCCTA 58.900 52.381 14.44 1.43 44.63 3.93
2982 3195 3.419915 CTGTACGCTCATCAATTTGTGC 58.580 45.455 0.00 0.00 33.81 4.57
3014 3227 4.295119 GCCGGTGACACGACTGGT 62.295 66.667 1.90 0.00 43.51 4.00
3027 3240 2.279650 CGTATTGGTACCGGCCGG 60.280 66.667 42.17 42.17 42.03 6.13
3116 3329 1.338105 CGTCAGAGCAACATCCCAAGA 60.338 52.381 0.00 0.00 0.00 3.02
3148 3361 2.890808 ACCAGGTACTATGTGATGCG 57.109 50.000 0.00 0.00 36.02 4.73
3149 3362 3.067742 ACGTACCAGGTACTATGTGATGC 59.932 47.826 24.67 0.00 36.93 3.91
3150 3363 4.913335 ACGTACCAGGTACTATGTGATG 57.087 45.455 24.67 10.92 36.93 3.07
3151 3364 5.198965 AGAACGTACCAGGTACTATGTGAT 58.801 41.667 24.67 6.19 36.93 3.06
3157 3370 5.683876 ACTCTAGAACGTACCAGGTACTA 57.316 43.478 24.67 11.23 36.93 1.82
3189 3407 2.045926 CGGTTCCCAAGGCCTGAG 60.046 66.667 5.69 1.24 0.00 3.35
3243 3461 0.708370 GTCAGTCACACGCATGTACG 59.292 55.000 0.00 0.00 36.72 3.67
3244 3462 1.068474 GGTCAGTCACACGCATGTAC 58.932 55.000 0.00 0.00 36.72 2.90
3246 3464 1.664649 CGGTCAGTCACACGCATGT 60.665 57.895 0.00 0.00 40.80 3.21
3251 3469 1.371758 CCAGTCGGTCAGTCACACG 60.372 63.158 0.00 0.00 0.00 4.49
3253 3471 1.792118 CGTCCAGTCGGTCAGTCACA 61.792 60.000 0.00 0.00 0.00 3.58
3254 3472 1.081376 CGTCCAGTCGGTCAGTCAC 60.081 63.158 0.00 0.00 0.00 3.67
3255 3473 2.916052 GCGTCCAGTCGGTCAGTCA 61.916 63.158 0.00 0.00 0.00 3.41
3256 3474 2.126424 GCGTCCAGTCGGTCAGTC 60.126 66.667 0.00 0.00 0.00 3.51
3257 3475 2.910479 TGCGTCCAGTCGGTCAGT 60.910 61.111 0.00 0.00 0.00 3.41
3258 3476 2.126307 CTGCGTCCAGTCGGTCAG 60.126 66.667 0.00 0.00 34.31 3.51
3259 3477 4.357947 GCTGCGTCCAGTCGGTCA 62.358 66.667 0.00 0.00 41.26 4.02
3283 3525 2.257676 GACCGAGTGGACCACGAC 59.742 66.667 18.93 15.32 39.64 4.34
3298 3540 0.107654 ATAAAGGAGCAGCCACCGAC 60.108 55.000 0.00 0.00 40.02 4.79
3299 3541 0.107703 CATAAAGGAGCAGCCACCGA 60.108 55.000 0.00 0.00 40.02 4.69
3309 3551 4.202233 TGCAGAGATGAGCTCATAAAGGAG 60.202 45.833 28.78 16.75 46.45 3.69
3310 3552 3.708121 TGCAGAGATGAGCTCATAAAGGA 59.292 43.478 28.78 16.71 46.45 3.36
3311 3553 4.059511 CTGCAGAGATGAGCTCATAAAGG 58.940 47.826 28.78 18.75 46.45 3.11
3312 3554 4.946445 TCTGCAGAGATGAGCTCATAAAG 58.054 43.478 28.78 18.69 46.45 1.85
3313 3555 5.539979 GATCTGCAGAGATGAGCTCATAAA 58.460 41.667 28.78 10.10 46.45 1.40
3314 3556 4.321082 CGATCTGCAGAGATGAGCTCATAA 60.321 45.833 28.78 9.77 46.45 1.90
3315 3557 3.190953 CGATCTGCAGAGATGAGCTCATA 59.809 47.826 28.78 11.46 46.45 2.15
3316 3558 2.029739 CGATCTGCAGAGATGAGCTCAT 60.030 50.000 29.09 29.09 46.45 2.90
3317 3559 1.337387 CGATCTGCAGAGATGAGCTCA 59.663 52.381 22.96 20.79 46.45 4.26
3318 3560 1.337703 ACGATCTGCAGAGATGAGCTC 59.662 52.381 22.96 11.57 39.19 4.09
3319 3561 1.337703 GACGATCTGCAGAGATGAGCT 59.662 52.381 22.96 2.55 39.19 4.09
3320 3562 1.602668 GGACGATCTGCAGAGATGAGC 60.603 57.143 22.96 8.80 39.19 4.26
3321 3563 1.955778 AGGACGATCTGCAGAGATGAG 59.044 52.381 22.96 12.86 39.19 2.90
3322 3564 2.064434 AGGACGATCTGCAGAGATGA 57.936 50.000 22.96 0.00 39.19 2.92
3323 3565 2.864946 CAAAGGACGATCTGCAGAGATG 59.135 50.000 22.96 15.77 39.19 2.90
3324 3566 2.499289 ACAAAGGACGATCTGCAGAGAT 59.501 45.455 22.96 9.72 42.02 2.75
3325 3567 1.895798 ACAAAGGACGATCTGCAGAGA 59.104 47.619 22.96 0.00 0.00 3.10
3326 3568 2.376808 ACAAAGGACGATCTGCAGAG 57.623 50.000 22.96 11.98 0.00 3.35
3327 3569 2.839486 AACAAAGGACGATCTGCAGA 57.161 45.000 20.79 20.79 0.00 4.26
3328 3570 5.551760 ATTTAACAAAGGACGATCTGCAG 57.448 39.130 7.63 7.63 0.00 4.41
3329 3571 5.957842 AATTTAACAAAGGACGATCTGCA 57.042 34.783 0.00 0.00 0.00 4.41
3330 3572 6.149633 ACAAATTTAACAAAGGACGATCTGC 58.850 36.000 0.00 0.00 0.00 4.26
3331 3573 7.358352 GCAACAAATTTAACAAAGGACGATCTG 60.358 37.037 0.00 0.00 0.00 2.90
3332 3574 6.640907 GCAACAAATTTAACAAAGGACGATCT 59.359 34.615 0.00 0.00 0.00 2.75
3333 3575 6.640907 AGCAACAAATTTAACAAAGGACGATC 59.359 34.615 0.00 0.00 0.00 3.69
3334 3576 6.512297 AGCAACAAATTTAACAAAGGACGAT 58.488 32.000 0.00 0.00 0.00 3.73
3347 3589 3.636300 TCTGCAGTGGTAGCAACAAATTT 59.364 39.130 14.67 0.00 42.17 1.82
3348 3590 3.221771 TCTGCAGTGGTAGCAACAAATT 58.778 40.909 14.67 0.00 42.17 1.82
3349 3591 2.862541 TCTGCAGTGGTAGCAACAAAT 58.137 42.857 14.67 0.00 42.17 2.32
3350 3592 2.340210 TCTGCAGTGGTAGCAACAAA 57.660 45.000 14.67 0.00 42.17 2.83
3351 3593 2.340210 TTCTGCAGTGGTAGCAACAA 57.660 45.000 14.67 0.00 42.17 2.83
3352 3594 2.566833 ATTCTGCAGTGGTAGCAACA 57.433 45.000 14.67 0.00 42.17 3.33
3353 3595 4.635765 TCATAATTCTGCAGTGGTAGCAAC 59.364 41.667 14.67 0.00 42.17 4.17
3354 3596 4.842574 TCATAATTCTGCAGTGGTAGCAA 58.157 39.130 14.67 0.00 42.17 3.91
3355 3597 4.486125 TCATAATTCTGCAGTGGTAGCA 57.514 40.909 14.67 0.00 40.19 3.49
3356 3598 4.453819 GGATCATAATTCTGCAGTGGTAGC 59.546 45.833 14.67 0.00 0.00 3.58
3357 3599 5.699915 CAGGATCATAATTCTGCAGTGGTAG 59.300 44.000 14.67 1.18 31.69 3.18
3358 3600 5.130975 ACAGGATCATAATTCTGCAGTGGTA 59.869 40.000 14.67 4.60 41.64 3.25
3359 3601 4.080129 ACAGGATCATAATTCTGCAGTGGT 60.080 41.667 14.67 0.00 41.64 4.16
3382 3624 4.878971 TCGAACTGTTTGGTGAAATTCTGA 59.121 37.500 7.88 0.00 0.00 3.27
3411 3655 1.079750 GTGGCCAGTCGAGAGGTTC 60.080 63.158 5.11 0.00 0.00 3.62
3414 3658 2.716017 GGAGTGGCCAGTCGAGAGG 61.716 68.421 29.91 0.00 36.34 3.69
3420 3664 1.609072 GTTTTCAAGGAGTGGCCAGTC 59.391 52.381 29.54 29.54 40.02 3.51
3425 3669 2.627699 TGGAATGTTTTCAAGGAGTGGC 59.372 45.455 0.00 0.00 33.23 5.01
3470 3735 2.586792 GCCAGGTACAGCTCCCTG 59.413 66.667 14.16 14.16 46.43 4.45
3596 3869 0.320421 TGAGCGAGTTGTAGTTGGCC 60.320 55.000 0.00 0.00 0.00 5.36
3746 4019 4.785453 CTGTCCTTGGCGGCCTCC 62.785 72.222 21.46 4.25 0.00 4.30
3914 4189 1.680522 CCCGATGGTCTCACCTCCTG 61.681 65.000 0.00 0.00 39.58 3.86
3927 4202 0.962356 AAGTTGCTCCTTGCCCGATG 60.962 55.000 0.00 0.00 42.00 3.84
3954 4229 1.159285 ACGTGACAATGCCATCTGTG 58.841 50.000 0.00 0.00 0.00 3.66
4013 4313 3.000041 TGCAGTTATTTCCAGCAGTACG 59.000 45.455 0.00 0.00 0.00 3.67
4059 4362 8.443937 CACTACTACTACAATTCTTTTCCAAGC 58.556 37.037 0.00 0.00 0.00 4.01
4069 4372 7.603024 AGGCTTGAAACACTACTACTACAATTC 59.397 37.037 0.00 0.00 0.00 2.17
4072 4375 6.415206 AGGCTTGAAACACTACTACTACAA 57.585 37.500 0.00 0.00 0.00 2.41
4173 4483 4.231718 TGGCTTTACAAATTTGGTCGAC 57.768 40.909 21.74 7.13 0.00 4.20
4232 4546 5.546434 CCAACGACAACATTTTCAAACAAC 58.454 37.500 0.00 0.00 0.00 3.32
4262 4576 3.445096 GCAATGGACAAATGGAAGTAGCT 59.555 43.478 0.00 0.00 0.00 3.32
4266 4580 1.545582 CGGCAATGGACAAATGGAAGT 59.454 47.619 0.00 0.00 0.00 3.01
4276 4590 1.648467 GCTCCTCAACGGCAATGGAC 61.648 60.000 0.00 0.00 0.00 4.02
4331 4645 7.285858 AGCTCTACCGTCAAGAAATATAAGAGT 59.714 37.037 0.00 0.00 31.55 3.24
4343 4657 1.088306 ACTCGAGCTCTACCGTCAAG 58.912 55.000 13.61 0.00 0.00 3.02
4347 4661 2.408241 GGCACTCGAGCTCTACCGT 61.408 63.158 13.61 0.23 34.17 4.83
4366 4680 2.230660 CAAGAACAACCAACCTCCCTC 58.769 52.381 0.00 0.00 0.00 4.30
4389 4703 2.221055 CCAAATACATAGCGCTTCGACC 59.779 50.000 18.68 0.00 0.00 4.79
4406 4720 6.052360 GCATTAGGGAAAACAGAAAACCAAA 58.948 36.000 0.00 0.00 0.00 3.28
4408 4722 4.651503 TGCATTAGGGAAAACAGAAAACCA 59.348 37.500 0.00 0.00 0.00 3.67
4552 4876 2.630592 GATCGAAGAGCCGGTCCACC 62.631 65.000 1.90 0.00 43.63 4.61
4587 4994 2.813754 TGCCAAGTCTCCTTCATTTTCG 59.186 45.455 0.00 0.00 0.00 3.46
4645 5060 7.112779 CAGATTAATCCTTAGGTCACTGGTTT 58.887 38.462 11.92 0.00 0.00 3.27
4665 5080 4.038162 GGAGGACTATAGTCGTTGCAGATT 59.962 45.833 24.72 4.89 45.65 2.40
4680 5095 1.284198 AGTTGGTAGAGCGGAGGACTA 59.716 52.381 0.00 0.00 0.00 2.59
4737 5152 8.436778 TGTCCTTTTAGCCATAGATTTATAGCA 58.563 33.333 0.00 0.00 0.00 3.49
4750 5166 3.137544 TCCTGTCTTTGTCCTTTTAGCCA 59.862 43.478 0.00 0.00 0.00 4.75
4755 5171 5.208121 TGGAATTCCTGTCTTTGTCCTTTT 58.792 37.500 24.73 0.00 36.82 2.27
4775 5191 2.290260 GCCGATATGGTTCATGGATGGA 60.290 50.000 0.00 0.00 41.21 3.41
4779 5195 2.371510 TGATGCCGATATGGTTCATGGA 59.628 45.455 0.00 0.00 41.21 3.41
4780 5196 2.745821 CTGATGCCGATATGGTTCATGG 59.254 50.000 0.00 0.00 41.21 3.66
4781 5197 2.745821 CCTGATGCCGATATGGTTCATG 59.254 50.000 0.00 0.00 41.21 3.07
4782 5198 2.290514 CCCTGATGCCGATATGGTTCAT 60.291 50.000 0.00 0.00 41.21 2.57
4783 5199 1.072173 CCCTGATGCCGATATGGTTCA 59.928 52.381 0.00 0.00 41.21 3.18
4784 5200 1.072331 ACCCTGATGCCGATATGGTTC 59.928 52.381 0.00 0.00 41.21 3.62
4793 5213 0.392998 ACTGCTTTACCCTGATGCCG 60.393 55.000 0.00 0.00 0.00 5.69
4809 5229 2.229675 TCATGCTAGATTCGCCACTG 57.770 50.000 0.00 0.00 0.00 3.66
4810 5230 4.607293 TTATCATGCTAGATTCGCCACT 57.393 40.909 0.00 0.00 0.00 4.00
4811 5231 4.931601 TCATTATCATGCTAGATTCGCCAC 59.068 41.667 0.00 0.00 0.00 5.01
4812 5232 5.151297 TCATTATCATGCTAGATTCGCCA 57.849 39.130 0.00 0.00 0.00 5.69
4813 5233 5.871524 TCTTCATTATCATGCTAGATTCGCC 59.128 40.000 0.00 0.00 0.00 5.54
4814 5234 6.589523 ACTCTTCATTATCATGCTAGATTCGC 59.410 38.462 0.00 0.00 0.00 4.70
4815 5235 9.288124 CTACTCTTCATTATCATGCTAGATTCG 57.712 37.037 0.00 0.00 0.00 3.34
4816 5236 9.585099 CCTACTCTTCATTATCATGCTAGATTC 57.415 37.037 0.00 0.00 0.00 2.52
4817 5237 8.040132 GCCTACTCTTCATTATCATGCTAGATT 58.960 37.037 0.00 0.00 0.00 2.40
4818 5238 7.399765 AGCCTACTCTTCATTATCATGCTAGAT 59.600 37.037 0.00 0.00 0.00 1.98
4819 5239 6.723515 AGCCTACTCTTCATTATCATGCTAGA 59.276 38.462 0.00 0.00 0.00 2.43
4820 5240 6.934056 AGCCTACTCTTCATTATCATGCTAG 58.066 40.000 0.00 0.00 0.00 3.42
4821 5241 6.494835 TGAGCCTACTCTTCATTATCATGCTA 59.505 38.462 0.00 0.00 43.85 3.49
4822 5242 5.306419 TGAGCCTACTCTTCATTATCATGCT 59.694 40.000 0.00 0.00 43.85 3.79
4823 5243 5.545588 TGAGCCTACTCTTCATTATCATGC 58.454 41.667 0.00 0.00 43.85 4.06
4824 5244 7.496920 TGTTTGAGCCTACTCTTCATTATCATG 59.503 37.037 0.00 0.00 43.85 3.07
4825 5245 7.568349 TGTTTGAGCCTACTCTTCATTATCAT 58.432 34.615 0.00 0.00 43.85 2.45
4826 5246 6.946340 TGTTTGAGCCTACTCTTCATTATCA 58.054 36.000 0.00 0.00 43.85 2.15
4827 5247 7.712639 TGATGTTTGAGCCTACTCTTCATTATC 59.287 37.037 0.00 0.00 43.85 1.75
4828 5248 7.568349 TGATGTTTGAGCCTACTCTTCATTAT 58.432 34.615 0.00 0.00 43.85 1.28
4829 5249 6.946340 TGATGTTTGAGCCTACTCTTCATTA 58.054 36.000 0.00 0.00 43.85 1.90
4830 5250 5.809001 TGATGTTTGAGCCTACTCTTCATT 58.191 37.500 0.00 0.00 43.85 2.57
4831 5251 5.426689 TGATGTTTGAGCCTACTCTTCAT 57.573 39.130 0.00 0.00 43.85 2.57
4832 5252 4.890158 TGATGTTTGAGCCTACTCTTCA 57.110 40.909 0.00 0.00 43.85 3.02
4833 5253 6.749923 ATTTGATGTTTGAGCCTACTCTTC 57.250 37.500 0.00 0.00 43.85 2.87
4834 5254 6.944862 AGAATTTGATGTTTGAGCCTACTCTT 59.055 34.615 0.00 0.00 43.85 2.85
4835 5255 6.479884 AGAATTTGATGTTTGAGCCTACTCT 58.520 36.000 0.00 0.00 43.85 3.24
4836 5256 6.749923 AGAATTTGATGTTTGAGCCTACTC 57.250 37.500 0.00 0.00 43.76 2.59
4837 5257 7.148171 GCTTAGAATTTGATGTTTGAGCCTACT 60.148 37.037 0.00 0.00 0.00 2.57
4838 5258 6.969473 GCTTAGAATTTGATGTTTGAGCCTAC 59.031 38.462 0.00 0.00 0.00 3.18
4839 5259 6.095440 GGCTTAGAATTTGATGTTTGAGCCTA 59.905 38.462 0.00 0.00 41.93 3.93
4840 5260 5.105595 GGCTTAGAATTTGATGTTTGAGCCT 60.106 40.000 0.00 0.00 41.93 4.58
4841 5261 5.105063 GGCTTAGAATTTGATGTTTGAGCC 58.895 41.667 0.00 0.00 39.11 4.70
4842 5262 5.105063 GGGCTTAGAATTTGATGTTTGAGC 58.895 41.667 0.00 0.00 0.00 4.26
4843 5263 6.271488 TGGGCTTAGAATTTGATGTTTGAG 57.729 37.500 0.00 0.00 0.00 3.02
4844 5264 6.662865 TTGGGCTTAGAATTTGATGTTTGA 57.337 33.333 0.00 0.00 0.00 2.69
4845 5265 7.910441 AATTGGGCTTAGAATTTGATGTTTG 57.090 32.000 0.00 0.00 0.00 2.93
4846 5266 7.765819 GCTAATTGGGCTTAGAATTTGATGTTT 59.234 33.333 0.00 0.00 31.58 2.83
4847 5267 7.093377 TGCTAATTGGGCTTAGAATTTGATGTT 60.093 33.333 6.75 0.00 31.58 2.71
4848 5268 6.380846 TGCTAATTGGGCTTAGAATTTGATGT 59.619 34.615 6.75 0.00 31.58 3.06
4849 5269 6.808829 TGCTAATTGGGCTTAGAATTTGATG 58.191 36.000 6.75 0.00 31.58 3.07
4850 5270 7.422465 TTGCTAATTGGGCTTAGAATTTGAT 57.578 32.000 6.75 0.00 31.58 2.57
4851 5271 6.849085 TTGCTAATTGGGCTTAGAATTTGA 57.151 33.333 6.75 0.00 31.58 2.69
4852 5272 7.466320 GCAATTGCTAATTGGGCTTAGAATTTG 60.466 37.037 23.21 1.34 46.47 2.32
4853 5273 6.539826 GCAATTGCTAATTGGGCTTAGAATTT 59.460 34.615 23.21 0.00 46.47 1.82
4854 5274 6.051074 GCAATTGCTAATTGGGCTTAGAATT 58.949 36.000 23.21 0.00 46.47 2.17
4855 5275 5.129155 TGCAATTGCTAATTGGGCTTAGAAT 59.871 36.000 29.37 0.00 46.47 2.40
4856 5276 4.465660 TGCAATTGCTAATTGGGCTTAGAA 59.534 37.500 29.37 1.93 46.47 2.10
4857 5277 4.022603 TGCAATTGCTAATTGGGCTTAGA 58.977 39.130 29.37 2.61 46.47 2.10
4858 5278 4.389890 TGCAATTGCTAATTGGGCTTAG 57.610 40.909 29.37 0.00 46.47 2.18
4859 5279 5.356291 AATGCAATTGCTAATTGGGCTTA 57.644 34.783 29.37 6.56 46.47 3.09
4860 5280 3.918294 ATGCAATTGCTAATTGGGCTT 57.082 38.095 29.37 0.00 46.47 4.35
4861 5281 3.918294 AATGCAATTGCTAATTGGGCT 57.082 38.095 29.37 0.00 46.47 5.19
4873 5293 6.012658 ACACGTAAGAATCACAATGCAATT 57.987 33.333 0.00 0.00 43.62 2.32
4874 5294 5.627499 ACACGTAAGAATCACAATGCAAT 57.373 34.783 0.00 0.00 43.62 3.56
4875 5295 6.546972 TTACACGTAAGAATCACAATGCAA 57.453 33.333 0.00 0.00 43.62 4.08
4876 5296 6.546972 TTTACACGTAAGAATCACAATGCA 57.453 33.333 0.00 0.00 43.62 3.96
4877 5297 5.508224 GCTTTACACGTAAGAATCACAATGC 59.492 40.000 0.70 0.00 43.62 3.56
4878 5298 6.519761 GTGCTTTACACGTAAGAATCACAATG 59.480 38.462 0.70 0.00 40.07 2.82
4879 5299 6.599437 GTGCTTTACACGTAAGAATCACAAT 58.401 36.000 0.70 0.00 40.07 2.71
4880 5300 5.981174 GTGCTTTACACGTAAGAATCACAA 58.019 37.500 0.70 0.00 40.07 3.33
4881 5301 5.585500 GTGCTTTACACGTAAGAATCACA 57.415 39.130 0.70 0.00 40.07 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.