Multiple sequence alignment - TraesCS4B01G305100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G305100 chr4B 100.000 3139 0 0 1 3139 593343885 593340747 0.000000e+00 5797.0
1 TraesCS4B01G305100 chr4B 83.195 1202 126 41 882 2071 593200603 593199466 0.000000e+00 1031.0
2 TraesCS4B01G305100 chr4B 86.444 568 57 9 1174 1723 593156023 593155458 3.460000e-169 604.0
3 TraesCS4B01G305100 chr4B 90.215 419 27 6 1174 1578 593197694 593197276 4.610000e-148 534.0
4 TraesCS4B01G305100 chr4B 82.784 546 75 10 1174 1706 593135973 593135434 1.320000e-128 470.0
5 TraesCS4B01G305100 chr4B 83.364 541 54 18 2625 3139 593199364 593198834 4.740000e-128 468.0
6 TraesCS4B01G305100 chr4B 81.897 464 74 5 2066 2522 39047181 39046721 1.770000e-102 383.0
7 TraesCS4B01G305100 chr4B 78.307 567 65 30 2587 3133 593196241 593195713 2.350000e-81 313.0
8 TraesCS4B01G305100 chr4B 89.655 58 3 1 752 806 593208175 593208118 1.560000e-08 71.3
9 TraesCS4B01G305100 chr4D 91.275 2086 115 23 715 2762 471262031 471259975 0.000000e+00 2782.0
10 TraesCS4B01G305100 chr4D 82.486 1239 110 53 858 2071 471229590 471228434 0.000000e+00 987.0
11 TraesCS4B01G305100 chr4D 85.746 912 89 27 1174 2071 471216799 471215915 0.000000e+00 926.0
12 TraesCS4B01G305100 chr4D 94.322 317 17 1 2823 3139 471259680 471259365 4.710000e-133 484.0
13 TraesCS4B01G305100 chr4D 82.222 585 60 19 2587 3139 471215843 471215271 6.130000e-127 464.0
14 TraesCS4B01G305100 chr4D 87.435 382 35 5 140 508 471262506 471262125 8.050000e-116 427.0
15 TraesCS4B01G305100 chr4D 85.912 362 39 8 2604 2961 471228334 471227981 2.960000e-100 375.0
16 TraesCS4B01G305100 chr4D 77.323 269 46 12 2068 2330 54281005 54280746 9.070000e-31 145.0
17 TraesCS4B01G305100 chr4D 79.535 215 29 9 1622 1830 471157280 471157075 4.220000e-29 139.0
18 TraesCS4B01G305100 chr4D 83.721 129 20 1 3012 3139 471224528 471224400 1.530000e-23 121.0
19 TraesCS4B01G305100 chr4A 89.908 1090 76 21 732 1802 678405360 678404286 0.000000e+00 1373.0
20 TraesCS4B01G305100 chr4A 84.789 1019 83 30 741 1727 678376994 678376016 0.000000e+00 957.0
21 TraesCS4B01G305100 chr4A 80.667 1050 106 50 956 1942 678373965 678372950 0.000000e+00 725.0
22 TraesCS4B01G305100 chr4A 85.897 546 41 20 2616 3139 678384862 678384331 1.650000e-152 549.0
23 TraesCS4B01G305100 chr4A 84.127 567 58 20 1174 1724 678370174 678369624 1.290000e-143 520.0
24 TraesCS4B01G305100 chr4A 81.583 581 64 16 2587 3136 678375600 678375032 1.030000e-119 440.0
25 TraesCS4B01G305100 chr4A 81.795 390 60 3 2240 2621 678404018 678403632 1.820000e-82 316.0
26 TraesCS4B01G305100 chr4A 85.200 250 27 6 1818 2066 678375952 678375712 6.720000e-62 248.0
27 TraesCS4B01G305100 chr4A 86.190 210 17 8 1948 2147 678404237 678404030 1.900000e-52 217.0
28 TraesCS4B01G305100 chr2B 80.778 463 76 8 2069 2522 27913345 27912887 1.790000e-92 350.0
29 TraesCS4B01G305100 chr2B 76.874 467 93 9 2066 2522 594270226 594269765 1.870000e-62 250.0
30 TraesCS4B01G305100 chr7B 80.000 460 84 3 2066 2518 713099117 713098659 1.800000e-87 333.0
31 TraesCS4B01G305100 chr7B 98.361 61 1 0 585 645 26209081 26209141 1.190000e-19 108.0
32 TraesCS4B01G305100 chr7B 97.674 43 0 1 580 622 709116729 709116688 4.340000e-09 73.1
33 TraesCS4B01G305100 chr1D 77.602 442 88 8 2080 2513 481687875 481688313 1.120000e-64 257.0
34 TraesCS4B01G305100 chr5A 78.338 397 73 7 2067 2456 441119551 441119161 8.700000e-61 244.0
35 TraesCS4B01G305100 chr5A 75.177 423 90 12 2104 2522 24419495 24419084 5.350000e-43 185.0
36 TraesCS4B01G305100 chr2D 81.882 287 48 4 2067 2352 552966298 552966581 4.050000e-59 239.0
37 TraesCS4B01G305100 chr3A 79.268 246 43 4 2280 2520 398741669 398741427 6.960000e-37 165.0
38 TraesCS4B01G305100 chr3A 94.915 59 3 0 586 644 440510855 440510797 3.330000e-15 93.5
39 TraesCS4B01G305100 chr7D 73.218 463 104 17 2070 2519 14585865 14585410 1.950000e-32 150.0
40 TraesCS4B01G305100 chr6B 98.361 61 1 0 585 645 16960721 16960781 1.190000e-19 108.0
41 TraesCS4B01G305100 chr6B 98.361 61 1 0 585 645 583193010 583193070 1.190000e-19 108.0
42 TraesCS4B01G305100 chr3D 100.000 29 0 0 509 537 601113849 601113877 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G305100 chr4B 593340747 593343885 3138 True 5797.000000 5797 100.000000 1 3139 1 chr4B.!!$R5 3138
1 TraesCS4B01G305100 chr4B 593155458 593156023 565 True 604.000000 604 86.444000 1174 1723 1 chr4B.!!$R3 549
2 TraesCS4B01G305100 chr4B 593195713 593200603 4890 True 586.500000 1031 83.770250 882 3139 4 chr4B.!!$R6 2257
3 TraesCS4B01G305100 chr4B 593135434 593135973 539 True 470.000000 470 82.784000 1174 1706 1 chr4B.!!$R2 532
4 TraesCS4B01G305100 chr4D 471259365 471262506 3141 True 1231.000000 2782 91.010667 140 3139 3 chr4D.!!$R5 2999
5 TraesCS4B01G305100 chr4D 471215271 471216799 1528 True 695.000000 926 83.984000 1174 3139 2 chr4D.!!$R3 1965
6 TraesCS4B01G305100 chr4D 471224400 471229590 5190 True 494.333333 987 84.039667 858 3139 3 chr4D.!!$R4 2281
7 TraesCS4B01G305100 chr4A 678403632 678405360 1728 True 635.333333 1373 85.964333 732 2621 3 chr4A.!!$R3 1889
8 TraesCS4B01G305100 chr4A 678369624 678376994 7370 True 578.000000 957 83.273200 741 3136 5 chr4A.!!$R2 2395
9 TraesCS4B01G305100 chr4A 678384331 678384862 531 True 549.000000 549 85.897000 2616 3139 1 chr4A.!!$R1 523

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
242 244 0.038744 ACCCTGTGCCAGAAATGAGG 59.961 55.0 4.0 0.0 32.44 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2217 2381 0.03563 CTGGCTCCAGTGAGAAAGGG 60.036 60.0 7.75 0.0 41.42 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.128580 TGATGTGGAAGCCTCGGA 57.871 55.556 0.00 0.00 0.00 4.55
18 19 1.900351 TGATGTGGAAGCCTCGGAG 59.100 57.895 0.00 0.00 0.00 4.63
19 20 0.904865 TGATGTGGAAGCCTCGGAGT 60.905 55.000 4.02 0.00 0.00 3.85
20 21 0.179097 GATGTGGAAGCCTCGGAGTC 60.179 60.000 4.02 0.00 0.00 3.36
21 22 1.949847 ATGTGGAAGCCTCGGAGTCG 61.950 60.000 4.02 0.00 37.82 4.18
22 23 3.760035 TGGAAGCCTCGGAGTCGC 61.760 66.667 4.02 1.13 36.13 5.19
23 24 4.516195 GGAAGCCTCGGAGTCGCC 62.516 72.222 4.02 0.00 36.13 5.54
24 25 3.453679 GAAGCCTCGGAGTCGCCT 61.454 66.667 4.02 0.00 36.13 5.52
25 26 3.708220 GAAGCCTCGGAGTCGCCTG 62.708 68.421 4.02 0.00 36.13 4.85
28 29 3.068691 CCTCGGAGTCGCCTGGAA 61.069 66.667 4.02 0.00 36.13 3.53
29 30 2.492090 CTCGGAGTCGCCTGGAAG 59.508 66.667 0.00 0.00 36.13 3.46
40 41 4.148825 CTGGAAGGCGACCCGGAG 62.149 72.222 0.73 0.00 35.76 4.63
52 53 4.074647 CCGGAGGCGGTTTCTTTT 57.925 55.556 0.00 0.00 46.14 2.27
53 54 2.337361 CCGGAGGCGGTTTCTTTTT 58.663 52.632 0.00 0.00 46.14 1.94
54 55 0.240145 CCGGAGGCGGTTTCTTTTTC 59.760 55.000 0.00 0.00 46.14 2.29
55 56 0.240145 CGGAGGCGGTTTCTTTTTCC 59.760 55.000 0.00 0.00 0.00 3.13
56 57 0.240145 GGAGGCGGTTTCTTTTTCCG 59.760 55.000 0.00 0.00 45.94 4.30
57 58 0.949397 GAGGCGGTTTCTTTTTCCGT 59.051 50.000 0.00 0.00 45.11 4.69
58 59 0.666374 AGGCGGTTTCTTTTTCCGTG 59.334 50.000 0.00 0.00 45.11 4.94
59 60 0.318360 GGCGGTTTCTTTTTCCGTGG 60.318 55.000 0.00 0.00 45.11 4.94
60 61 0.318360 GCGGTTTCTTTTTCCGTGGG 60.318 55.000 0.00 0.00 45.11 4.61
61 62 1.026584 CGGTTTCTTTTTCCGTGGGT 58.973 50.000 0.00 0.00 39.51 4.51
62 63 1.002142 CGGTTTCTTTTTCCGTGGGTC 60.002 52.381 0.00 0.00 39.51 4.46
63 64 2.304092 GGTTTCTTTTTCCGTGGGTCT 58.696 47.619 0.00 0.00 0.00 3.85
64 65 2.691526 GGTTTCTTTTTCCGTGGGTCTT 59.308 45.455 0.00 0.00 0.00 3.01
65 66 3.243301 GGTTTCTTTTTCCGTGGGTCTTC 60.243 47.826 0.00 0.00 0.00 2.87
66 67 3.570912 TTCTTTTTCCGTGGGTCTTCT 57.429 42.857 0.00 0.00 0.00 2.85
67 68 2.846193 TCTTTTTCCGTGGGTCTTCTG 58.154 47.619 0.00 0.00 0.00 3.02
68 69 2.171870 TCTTTTTCCGTGGGTCTTCTGT 59.828 45.455 0.00 0.00 0.00 3.41
69 70 1.961793 TTTTCCGTGGGTCTTCTGTG 58.038 50.000 0.00 0.00 0.00 3.66
70 71 1.124780 TTTCCGTGGGTCTTCTGTGA 58.875 50.000 0.00 0.00 0.00 3.58
71 72 1.348064 TTCCGTGGGTCTTCTGTGAT 58.652 50.000 0.00 0.00 0.00 3.06
72 73 2.225382 TCCGTGGGTCTTCTGTGATA 57.775 50.000 0.00 0.00 0.00 2.15
73 74 2.100197 TCCGTGGGTCTTCTGTGATAG 58.900 52.381 0.00 0.00 0.00 2.08
74 75 1.825474 CCGTGGGTCTTCTGTGATAGT 59.175 52.381 0.00 0.00 0.00 2.12
75 76 3.021695 CCGTGGGTCTTCTGTGATAGTA 58.978 50.000 0.00 0.00 0.00 1.82
76 77 3.066900 CCGTGGGTCTTCTGTGATAGTAG 59.933 52.174 0.00 0.00 0.00 2.57
77 78 3.695060 CGTGGGTCTTCTGTGATAGTAGT 59.305 47.826 0.00 0.00 0.00 2.73
78 79 4.438880 CGTGGGTCTTCTGTGATAGTAGTG 60.439 50.000 0.00 0.00 0.00 2.74
79 80 4.463186 GTGGGTCTTCTGTGATAGTAGTGT 59.537 45.833 0.00 0.00 0.00 3.55
80 81 5.047235 GTGGGTCTTCTGTGATAGTAGTGTT 60.047 44.000 0.00 0.00 0.00 3.32
81 82 5.047306 TGGGTCTTCTGTGATAGTAGTGTTG 60.047 44.000 0.00 0.00 0.00 3.33
82 83 5.047235 GGGTCTTCTGTGATAGTAGTGTTGT 60.047 44.000 0.00 0.00 0.00 3.32
83 84 6.094061 GGTCTTCTGTGATAGTAGTGTTGTC 58.906 44.000 0.00 0.00 0.00 3.18
84 85 5.795939 GTCTTCTGTGATAGTAGTGTTGTCG 59.204 44.000 0.00 0.00 0.00 4.35
85 86 4.696899 TCTGTGATAGTAGTGTTGTCGG 57.303 45.455 0.00 0.00 0.00 4.79
86 87 4.077108 TCTGTGATAGTAGTGTTGTCGGT 58.923 43.478 0.00 0.00 0.00 4.69
87 88 4.521639 TCTGTGATAGTAGTGTTGTCGGTT 59.478 41.667 0.00 0.00 0.00 4.44
88 89 4.801891 TGTGATAGTAGTGTTGTCGGTTC 58.198 43.478 0.00 0.00 0.00 3.62
89 90 4.171754 GTGATAGTAGTGTTGTCGGTTCC 58.828 47.826 0.00 0.00 0.00 3.62
90 91 3.827876 TGATAGTAGTGTTGTCGGTTCCA 59.172 43.478 0.00 0.00 0.00 3.53
91 92 2.521105 AGTAGTGTTGTCGGTTCCAC 57.479 50.000 0.00 0.00 0.00 4.02
92 93 2.037144 AGTAGTGTTGTCGGTTCCACT 58.963 47.619 0.00 0.00 40.92 4.00
93 94 2.433239 AGTAGTGTTGTCGGTTCCACTT 59.567 45.455 0.00 0.00 38.91 3.16
94 95 3.638160 AGTAGTGTTGTCGGTTCCACTTA 59.362 43.478 0.00 0.00 38.91 2.24
95 96 3.764237 AGTGTTGTCGGTTCCACTTAT 57.236 42.857 0.00 0.00 34.64 1.73
96 97 4.877378 AGTGTTGTCGGTTCCACTTATA 57.123 40.909 0.00 0.00 34.64 0.98
97 98 5.416271 AGTGTTGTCGGTTCCACTTATAT 57.584 39.130 0.00 0.00 34.64 0.86
98 99 5.175859 AGTGTTGTCGGTTCCACTTATATG 58.824 41.667 0.00 0.00 34.64 1.78
99 100 5.046878 AGTGTTGTCGGTTCCACTTATATGA 60.047 40.000 0.00 0.00 34.64 2.15
100 101 5.640357 GTGTTGTCGGTTCCACTTATATGAA 59.360 40.000 0.00 0.00 0.00 2.57
101 102 6.148150 GTGTTGTCGGTTCCACTTATATGAAA 59.852 38.462 0.00 0.00 0.00 2.69
102 103 6.882140 TGTTGTCGGTTCCACTTATATGAAAT 59.118 34.615 0.00 0.00 0.00 2.17
103 104 7.392113 TGTTGTCGGTTCCACTTATATGAAATT 59.608 33.333 0.00 0.00 0.00 1.82
104 105 7.548196 TGTCGGTTCCACTTATATGAAATTC 57.452 36.000 0.00 0.00 0.00 2.17
105 106 7.106890 TGTCGGTTCCACTTATATGAAATTCA 58.893 34.615 0.00 0.00 0.00 2.57
106 107 7.065324 TGTCGGTTCCACTTATATGAAATTCAC 59.935 37.037 0.00 0.00 0.00 3.18
107 108 7.065324 GTCGGTTCCACTTATATGAAATTCACA 59.935 37.037 0.00 0.00 0.00 3.58
108 109 7.608376 TCGGTTCCACTTATATGAAATTCACAA 59.392 33.333 0.00 0.00 0.00 3.33
109 110 8.240682 CGGTTCCACTTATATGAAATTCACAAA 58.759 33.333 0.00 0.00 0.00 2.83
110 111 9.573133 GGTTCCACTTATATGAAATTCACAAAG 57.427 33.333 0.00 5.19 0.00 2.77
120 121 5.401550 TGAAATTCACAAAGATTGATCCGC 58.598 37.500 0.00 0.00 0.00 5.54
121 122 5.183713 TGAAATTCACAAAGATTGATCCGCT 59.816 36.000 0.00 0.00 0.00 5.52
122 123 4.627611 ATTCACAAAGATTGATCCGCTG 57.372 40.909 0.00 0.00 0.00 5.18
123 124 1.739466 TCACAAAGATTGATCCGCTGC 59.261 47.619 0.00 0.00 0.00 5.25
124 125 1.469703 CACAAAGATTGATCCGCTGCA 59.530 47.619 0.00 0.00 0.00 4.41
125 126 2.095110 CACAAAGATTGATCCGCTGCAA 60.095 45.455 0.00 0.00 0.00 4.08
126 127 2.163010 ACAAAGATTGATCCGCTGCAAG 59.837 45.455 0.00 0.00 0.00 4.01
127 128 1.386533 AAGATTGATCCGCTGCAAGG 58.613 50.000 0.00 1.62 0.00 3.61
128 129 0.254178 AGATTGATCCGCTGCAAGGT 59.746 50.000 0.00 0.00 0.00 3.50
129 130 1.098050 GATTGATCCGCTGCAAGGTT 58.902 50.000 0.00 0.03 0.00 3.50
130 131 1.064654 GATTGATCCGCTGCAAGGTTC 59.935 52.381 0.00 9.20 0.00 3.62
131 132 0.250684 TTGATCCGCTGCAAGGTTCA 60.251 50.000 14.29 14.29 36.14 3.18
132 133 0.250684 TGATCCGCTGCAAGGTTCAA 60.251 50.000 15.38 4.23 35.30 2.69
133 134 0.881118 GATCCGCTGCAAGGTTCAAA 59.119 50.000 11.85 0.00 0.00 2.69
134 135 1.474077 GATCCGCTGCAAGGTTCAAAT 59.526 47.619 11.85 0.00 0.00 2.32
135 136 2.192664 TCCGCTGCAAGGTTCAAATA 57.807 45.000 0.00 0.00 0.00 1.40
136 137 2.722094 TCCGCTGCAAGGTTCAAATAT 58.278 42.857 0.00 0.00 0.00 1.28
137 138 3.088532 TCCGCTGCAAGGTTCAAATATT 58.911 40.909 0.00 0.00 0.00 1.28
138 139 4.265893 TCCGCTGCAAGGTTCAAATATTA 58.734 39.130 0.00 0.00 0.00 0.98
158 159 6.769134 ATTAGGTATGAAAAAGGGAAACGG 57.231 37.500 0.00 0.00 0.00 4.44
169 170 2.853705 AGGGAAACGGAATCGAAACAA 58.146 42.857 0.00 0.00 40.11 2.83
172 174 3.978855 GGGAAACGGAATCGAAACAAAAG 59.021 43.478 0.00 0.00 40.11 2.27
179 181 3.740832 GGAATCGAAACAAAAGCAAAGGG 59.259 43.478 0.00 0.00 0.00 3.95
190 192 3.733443 AAGCAAAGGGTACAAGCAAAG 57.267 42.857 0.00 0.00 0.00 2.77
192 194 1.605457 GCAAAGGGTACAAGCAAAGCC 60.605 52.381 0.00 0.00 0.00 4.35
197 199 1.000274 GGGTACAAGCAAAGCCAACAG 60.000 52.381 0.00 0.00 33.37 3.16
214 216 4.336433 CCAACAGTCCACACATAATCATCC 59.664 45.833 0.00 0.00 0.00 3.51
217 219 3.117926 CAGTCCACACATAATCATCCCCA 60.118 47.826 0.00 0.00 0.00 4.96
238 240 0.779997 AGGAACCCTGTGCCAGAAAT 59.220 50.000 4.00 0.00 32.48 2.17
242 244 0.038744 ACCCTGTGCCAGAAATGAGG 59.961 55.000 4.00 0.00 32.44 3.86
243 245 0.038744 CCCTGTGCCAGAAATGAGGT 59.961 55.000 4.00 0.00 32.44 3.85
244 246 1.281867 CCCTGTGCCAGAAATGAGGTA 59.718 52.381 4.00 0.00 32.44 3.08
263 265 6.441924 TGAGGTATGGATTGAGAAGAAAGACT 59.558 38.462 0.00 0.00 0.00 3.24
266 268 7.621683 AGGTATGGATTGAGAAGAAAGACTAGT 59.378 37.037 0.00 0.00 0.00 2.57
332 343 5.873179 TTGATAGTCAATGACGTTTTCCC 57.127 39.130 7.83 0.00 37.67 3.97
347 358 4.697352 CGTTTTCCCATCTTGATCTTGACT 59.303 41.667 0.00 0.00 0.00 3.41
354 365 6.156775 TCCCATCTTGATCTTGACTGTTGATA 59.843 38.462 0.00 0.00 0.00 2.15
421 435 2.626785 TCCCATCTTGGAACCACTACA 58.373 47.619 0.00 0.00 40.96 2.74
428 442 2.922740 TGGAACCACTACACCAACTC 57.077 50.000 0.00 0.00 0.00 3.01
431 445 3.968649 TGGAACCACTACACCAACTCTAA 59.031 43.478 0.00 0.00 0.00 2.10
450 464 9.457436 AACTCTAATCGGTTAACATAAATGGTT 57.543 29.630 8.10 1.13 0.00 3.67
508 522 1.135402 CGTGCTTACCCCTTGATTTGC 60.135 52.381 0.00 0.00 0.00 3.68
509 523 2.171003 GTGCTTACCCCTTGATTTGCT 58.829 47.619 0.00 0.00 0.00 3.91
510 524 2.562738 GTGCTTACCCCTTGATTTGCTT 59.437 45.455 0.00 0.00 0.00 3.91
511 525 2.562298 TGCTTACCCCTTGATTTGCTTG 59.438 45.455 0.00 0.00 0.00 4.01
512 526 2.825532 GCTTACCCCTTGATTTGCTTGA 59.174 45.455 0.00 0.00 0.00 3.02
513 527 3.367395 GCTTACCCCTTGATTTGCTTGAC 60.367 47.826 0.00 0.00 0.00 3.18
514 528 2.380064 ACCCCTTGATTTGCTTGACA 57.620 45.000 0.00 0.00 0.00 3.58
515 529 2.893424 ACCCCTTGATTTGCTTGACAT 58.107 42.857 0.00 0.00 0.00 3.06
516 530 3.242011 ACCCCTTGATTTGCTTGACATT 58.758 40.909 0.00 0.00 0.00 2.71
517 531 3.007182 ACCCCTTGATTTGCTTGACATTG 59.993 43.478 0.00 0.00 0.00 2.82
518 532 3.007182 CCCCTTGATTTGCTTGACATTGT 59.993 43.478 0.00 0.00 0.00 2.71
519 533 4.503643 CCCCTTGATTTGCTTGACATTGTT 60.504 41.667 0.00 0.00 0.00 2.83
520 534 5.058490 CCCTTGATTTGCTTGACATTGTTT 58.942 37.500 0.00 0.00 0.00 2.83
521 535 5.049954 CCCTTGATTTGCTTGACATTGTTTG 60.050 40.000 0.00 0.00 0.00 2.93
522 536 5.524646 CCTTGATTTGCTTGACATTGTTTGT 59.475 36.000 0.00 0.00 42.79 2.83
523 537 6.037391 CCTTGATTTGCTTGACATTGTTTGTT 59.963 34.615 0.00 0.00 39.18 2.83
524 538 6.981762 TGATTTGCTTGACATTGTTTGTTT 57.018 29.167 0.00 0.00 39.18 2.83
525 539 7.375106 TGATTTGCTTGACATTGTTTGTTTT 57.625 28.000 0.00 0.00 39.18 2.43
526 540 7.814642 TGATTTGCTTGACATTGTTTGTTTTT 58.185 26.923 0.00 0.00 39.18 1.94
527 541 8.939929 TGATTTGCTTGACATTGTTTGTTTTTA 58.060 25.926 0.00 0.00 39.18 1.52
528 542 9.424659 GATTTGCTTGACATTGTTTGTTTTTAG 57.575 29.630 0.00 0.00 39.18 1.85
529 543 6.900568 TGCTTGACATTGTTTGTTTTTAGG 57.099 33.333 0.00 0.00 39.18 2.69
530 544 6.402222 TGCTTGACATTGTTTGTTTTTAGGT 58.598 32.000 0.00 0.00 39.18 3.08
531 545 6.876257 TGCTTGACATTGTTTGTTTTTAGGTT 59.124 30.769 0.00 0.00 39.18 3.50
532 546 7.148507 TGCTTGACATTGTTTGTTTTTAGGTTG 60.149 33.333 0.00 0.00 39.18 3.77
533 547 6.654793 TGACATTGTTTGTTTTTAGGTTGC 57.345 33.333 0.00 0.00 39.18 4.17
549 563 3.328050 AGGTTGCTTAGTTGGCTTACTCT 59.672 43.478 0.00 0.00 0.00 3.24
572 586 8.251750 TCTTATCAAGTCAAAATTCTACACCG 57.748 34.615 0.00 0.00 0.00 4.94
573 587 7.876068 TCTTATCAAGTCAAAATTCTACACCGT 59.124 33.333 0.00 0.00 0.00 4.83
608 622 2.810439 TTTTTGCAACCCAATCCGAG 57.190 45.000 0.00 0.00 32.49 4.63
609 623 1.988293 TTTTGCAACCCAATCCGAGA 58.012 45.000 0.00 0.00 32.49 4.04
610 624 1.533625 TTTGCAACCCAATCCGAGAG 58.466 50.000 0.00 0.00 32.49 3.20
611 625 0.960364 TTGCAACCCAATCCGAGAGC 60.960 55.000 0.00 0.00 0.00 4.09
612 626 1.078143 GCAACCCAATCCGAGAGCT 60.078 57.895 0.00 0.00 0.00 4.09
613 627 0.678048 GCAACCCAATCCGAGAGCTT 60.678 55.000 0.00 0.00 0.00 3.74
614 628 1.826385 CAACCCAATCCGAGAGCTTT 58.174 50.000 0.00 0.00 0.00 3.51
615 629 2.162681 CAACCCAATCCGAGAGCTTTT 58.837 47.619 0.00 0.00 0.00 2.27
616 630 3.343617 CAACCCAATCCGAGAGCTTTTA 58.656 45.455 0.00 0.00 0.00 1.52
617 631 3.933861 ACCCAATCCGAGAGCTTTTAT 57.066 42.857 0.00 0.00 0.00 1.40
618 632 4.236527 ACCCAATCCGAGAGCTTTTATT 57.763 40.909 0.00 0.00 0.00 1.40
619 633 4.200092 ACCCAATCCGAGAGCTTTTATTC 58.800 43.478 0.00 0.00 0.00 1.75
620 634 4.199310 CCCAATCCGAGAGCTTTTATTCA 58.801 43.478 0.00 0.00 0.00 2.57
621 635 4.640201 CCCAATCCGAGAGCTTTTATTCAA 59.360 41.667 0.00 0.00 0.00 2.69
622 636 5.449177 CCCAATCCGAGAGCTTTTATTCAAC 60.449 44.000 0.00 0.00 0.00 3.18
623 637 5.123820 CCAATCCGAGAGCTTTTATTCAACA 59.876 40.000 0.00 0.00 0.00 3.33
624 638 6.349280 CCAATCCGAGAGCTTTTATTCAACAA 60.349 38.462 0.00 0.00 0.00 2.83
625 639 6.817765 ATCCGAGAGCTTTTATTCAACAAA 57.182 33.333 0.00 0.00 0.00 2.83
626 640 6.627395 TCCGAGAGCTTTTATTCAACAAAA 57.373 33.333 0.00 0.00 0.00 2.44
627 641 6.668323 TCCGAGAGCTTTTATTCAACAAAAG 58.332 36.000 0.00 0.00 43.02 2.27
636 650 8.733857 CTTTTATTCAACAAAAGCACTCCTAG 57.266 34.615 0.00 0.00 36.50 3.02
637 651 4.773323 ATTCAACAAAAGCACTCCTAGC 57.227 40.909 0.00 0.00 0.00 3.42
638 652 3.207265 TCAACAAAAGCACTCCTAGCA 57.793 42.857 0.00 0.00 0.00 3.49
639 653 3.754965 TCAACAAAAGCACTCCTAGCAT 58.245 40.909 0.00 0.00 0.00 3.79
640 654 3.753272 TCAACAAAAGCACTCCTAGCATC 59.247 43.478 0.00 0.00 0.00 3.91
641 655 3.423539 ACAAAAGCACTCCTAGCATCA 57.576 42.857 0.00 0.00 0.00 3.07
642 656 3.960571 ACAAAAGCACTCCTAGCATCAT 58.039 40.909 0.00 0.00 0.00 2.45
657 671 6.992123 CCTAGCATCATCCACTATAAAACACA 59.008 38.462 0.00 0.00 0.00 3.72
661 675 6.705782 CATCATCCACTATAAAACACACGTC 58.294 40.000 0.00 0.00 0.00 4.34
666 680 4.391830 CCACTATAAAACACACGTCATGCT 59.608 41.667 0.00 0.00 0.00 3.79
671 685 2.121564 AACACACGTCATGCTGCAGC 62.122 55.000 31.89 31.89 42.50 5.25
678 692 2.022346 CATGCTGCAGCTAACGCG 59.978 61.111 36.61 16.02 42.32 6.01
768 782 1.447838 CAGGATCCACCACGTTCCG 60.448 63.158 15.82 0.00 42.04 4.30
809 832 4.201980 CGACCTCGTGATTAGTGATTACCA 60.202 45.833 0.00 0.00 34.11 3.25
855 881 2.416893 GGTGCGAGAAGGAATCAAACTC 59.583 50.000 0.00 0.00 0.00 3.01
1037 1075 2.174969 CCGCTATAAAACCGCGCCA 61.175 57.895 0.00 0.00 45.02 5.69
1095 1142 3.067721 GCCTCAAGCACTACTACTACG 57.932 52.381 0.00 0.00 42.97 3.51
1145 1199 0.689412 CCCCTCTCCTCTCCAAGTCC 60.689 65.000 0.00 0.00 0.00 3.85
1147 1201 0.041833 CCTCTCCTCTCCAAGTCCCA 59.958 60.000 0.00 0.00 0.00 4.37
1745 1894 1.132453 GCCGGGCTACAAATTCAGTTC 59.868 52.381 12.87 0.00 0.00 3.01
1766 1919 8.607459 CAGTTCCAGTATAATTCTTACAAGCTG 58.393 37.037 0.00 0.00 0.00 4.24
1775 1928 0.997932 CTTACAAGCTGCTCTGCTCG 59.002 55.000 1.00 0.00 43.24 5.03
1830 1984 2.966050 CAGGGTAGTTCTCTGACTTGC 58.034 52.381 0.00 0.00 46.95 4.01
1838 1992 5.637006 AGTTCTCTGACTTGCACTACTAG 57.363 43.478 0.00 0.00 0.00 2.57
1871 2025 5.127682 GGGAAAACCAGCATCAATGACTATT 59.872 40.000 0.00 0.00 39.85 1.73
1945 2099 3.715628 ATCCTGTGAACAGTTTTGTGC 57.284 42.857 9.49 0.00 42.27 4.57
2011 2175 4.602006 GATAAAAGAAATGCCGAAGAGCC 58.398 43.478 0.00 0.00 0.00 4.70
2038 2202 5.316987 ACTACAGAATGAGGGGTGAAAAAG 58.683 41.667 0.00 0.00 39.69 2.27
2069 2233 6.380095 TTGTTATTCGTGCCACTAACTTTT 57.620 33.333 6.92 0.00 0.00 2.27
2124 2288 6.484364 TCAATCATGGCAGTATAGAGAACA 57.516 37.500 0.00 0.00 0.00 3.18
2130 2294 7.492524 TCATGGCAGTATAGAGAACACTAAAG 58.507 38.462 0.00 0.00 0.00 1.85
2161 2325 7.462571 AAAAATACAACCATGTCTAGGAACC 57.537 36.000 0.00 0.00 41.05 3.62
2162 2326 5.772393 AATACAACCATGTCTAGGAACCA 57.228 39.130 0.00 0.00 41.05 3.67
2163 2327 5.975988 ATACAACCATGTCTAGGAACCAT 57.024 39.130 0.00 0.00 41.05 3.55
2164 2328 4.657814 ACAACCATGTCTAGGAACCATT 57.342 40.909 0.00 0.00 33.41 3.16
2165 2329 5.772393 ACAACCATGTCTAGGAACCATTA 57.228 39.130 0.00 0.00 33.41 1.90
2179 2343 4.357142 GAACCATTAAGCGACGACTATCA 58.643 43.478 0.00 0.00 0.00 2.15
2187 2351 1.269166 CGACGACTATCAACACTGGC 58.731 55.000 0.00 0.00 0.00 4.85
2190 2354 0.735978 CGACTATCAACACTGGCGCA 60.736 55.000 10.83 0.00 0.00 6.09
2215 2379 2.435234 GGCGCACCACCGTCATTA 60.435 61.111 10.83 0.00 35.26 1.90
2217 2381 2.746803 GCGCACCACCGTCATTACC 61.747 63.158 0.30 0.00 0.00 2.85
2221 2385 0.326927 CACCACCGTCATTACCCCTT 59.673 55.000 0.00 0.00 0.00 3.95
2222 2386 1.069775 ACCACCGTCATTACCCCTTT 58.930 50.000 0.00 0.00 0.00 3.11
2227 2391 2.027469 ACCGTCATTACCCCTTTCTCAC 60.027 50.000 0.00 0.00 0.00 3.51
2235 2399 1.492133 CCCCTTTCTCACTGGAGCCA 61.492 60.000 0.00 0.00 41.13 4.75
2238 2402 1.066286 CCTTTCTCACTGGAGCCAGAG 60.066 57.143 22.62 14.94 46.30 3.35
2246 2410 2.303022 CACTGGAGCCAGAGAAACCTTA 59.697 50.000 22.62 0.00 46.30 2.69
2259 2423 7.976734 CCAGAGAAACCTTATTGTAGTAGACAG 59.023 40.741 0.00 0.00 39.88 3.51
2270 2434 4.001652 TGTAGTAGACAGTCGAGAAGTGG 58.998 47.826 0.00 0.00 32.86 4.00
2281 2445 1.199327 CGAGAAGTGGTCGTGCTAAGA 59.801 52.381 0.00 0.00 32.62 2.10
2290 2454 3.863142 GTCGTGCTAAGACCCTAAAGA 57.137 47.619 0.00 0.00 32.78 2.52
2293 2457 3.830755 TCGTGCTAAGACCCTAAAGAACT 59.169 43.478 0.00 0.00 0.00 3.01
2305 2469 4.499183 CCTAAAGAACTAGTGCACCAGAG 58.501 47.826 19.53 13.68 0.00 3.35
2306 2470 2.464157 AAGAACTAGTGCACCAGAGC 57.536 50.000 19.53 9.76 0.00 4.09
2348 2512 7.872993 TGAAGAGAGTTGTACATCGAAAAGATT 59.127 33.333 0.00 0.00 37.52 2.40
2368 2532 9.458374 AAAGATTAAATTTGTAACCACACGAAG 57.542 29.630 0.00 0.00 33.30 3.79
2385 2549 3.377798 ACGAAGGAAGACGAACTAGATCC 59.622 47.826 0.00 0.00 0.00 3.36
2391 2555 7.045126 AGGAAGACGAACTAGATCCAAATAG 57.955 40.000 0.00 0.00 0.00 1.73
2412 2576 1.826054 CCACCGAAAACCAGCACCA 60.826 57.895 0.00 0.00 0.00 4.17
2415 2579 0.395173 ACCGAAAACCAGCACCAACT 60.395 50.000 0.00 0.00 0.00 3.16
2423 2587 1.308069 CCAGCACCAACTGAATCCCG 61.308 60.000 0.00 0.00 40.25 5.14
2440 2604 1.215655 CCGCGAAATCCGATGGAGAC 61.216 60.000 8.23 0.00 41.76 3.36
2458 2622 5.543507 GAGACACACCTCCAGATATCATT 57.456 43.478 5.32 0.00 0.00 2.57
2459 2623 5.287674 AGACACACCTCCAGATATCATTG 57.712 43.478 5.32 0.00 0.00 2.82
2460 2624 4.102210 AGACACACCTCCAGATATCATTGG 59.898 45.833 5.32 5.08 35.74 3.16
2494 2658 1.541368 CCACCGGGGATGGGGATAT 60.541 63.158 4.41 0.00 40.01 1.63
2502 2666 0.324943 GGATGGGGATATGACGTGGG 59.675 60.000 0.00 0.00 0.00 4.61
2547 2711 4.035909 ACTGCCACTTACTTTTTGTAACGG 59.964 41.667 0.00 0.00 36.33 4.44
2686 2925 0.817634 CCGCCCAAAGTGACAACAGA 60.818 55.000 0.00 0.00 0.00 3.41
2742 2981 9.559732 TCTCAAAATGATCTTCTAGTTTCACAA 57.440 29.630 0.00 0.00 0.00 3.33
2819 3067 9.653287 TTTCTACAACAGAATCTAACCTATGTG 57.347 33.333 0.00 0.00 42.88 3.21
2820 3068 8.589701 TCTACAACAGAATCTAACCTATGTGA 57.410 34.615 0.00 0.00 0.00 3.58
2821 3069 9.031537 TCTACAACAGAATCTAACCTATGTGAA 57.968 33.333 0.00 0.00 0.00 3.18
2875 3350 2.365293 ACAAACAATGCCTCAAGGAACC 59.635 45.455 0.00 0.00 37.39 3.62
2961 3471 7.918076 TGTTGTTCTCTTCCCTACTCATTATT 58.082 34.615 0.00 0.00 0.00 1.40
2978 3510 5.069648 TCATTATTGTGGGACAAAAACTGCA 59.930 36.000 0.00 0.00 39.95 4.41
3050 6966 4.274459 GCAAGAAGAACAAGTCATGTGAGT 59.726 41.667 0.00 0.00 42.99 3.41
3067 6983 4.452114 TGTGAGTGTGATGTGTTATGCTTC 59.548 41.667 0.00 0.00 0.00 3.86
3076 6992 7.148255 TGTGATGTGTTATGCTTCCTTTGATAC 60.148 37.037 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.904865 ACTCCGAGGCTTCCACATCA 60.905 55.000 0.00 0.00 0.00 3.07
1 2 0.179097 GACTCCGAGGCTTCCACATC 60.179 60.000 0.00 0.00 0.00 3.06
2 3 1.901085 GACTCCGAGGCTTCCACAT 59.099 57.895 0.00 0.00 0.00 3.21
3 4 2.636412 CGACTCCGAGGCTTCCACA 61.636 63.158 0.00 0.00 38.22 4.17
4 5 2.182030 CGACTCCGAGGCTTCCAC 59.818 66.667 0.00 0.00 38.22 4.02
5 6 3.760035 GCGACTCCGAGGCTTCCA 61.760 66.667 0.00 0.00 38.22 3.53
6 7 4.516195 GGCGACTCCGAGGCTTCC 62.516 72.222 0.00 0.00 38.22 3.46
7 8 3.453679 AGGCGACTCCGAGGCTTC 61.454 66.667 0.00 0.00 40.53 3.86
8 9 3.764466 CAGGCGACTCCGAGGCTT 61.764 66.667 0.00 0.00 41.52 4.35
11 12 3.068691 TTCCAGGCGACTCCGAGG 61.069 66.667 0.00 0.00 40.21 4.63
12 13 2.492090 CTTCCAGGCGACTCCGAG 59.508 66.667 0.00 0.00 40.21 4.63
13 14 3.068691 CCTTCCAGGCGACTCCGA 61.069 66.667 0.00 0.00 40.21 4.55
23 24 4.148825 CTCCGGGTCGCCTTCCAG 62.149 72.222 0.00 0.00 0.00 3.86
36 37 0.240145 GGAAAAAGAAACCGCCTCCG 59.760 55.000 0.00 0.00 0.00 4.63
37 38 0.240145 CGGAAAAAGAAACCGCCTCC 59.760 55.000 0.00 0.00 40.19 4.30
38 39 3.767287 CGGAAAAAGAAACCGCCTC 57.233 52.632 0.00 0.00 40.19 4.70
43 44 2.304092 AGACCCACGGAAAAAGAAACC 58.696 47.619 0.00 0.00 0.00 3.27
44 45 3.630769 AGAAGACCCACGGAAAAAGAAAC 59.369 43.478 0.00 0.00 0.00 2.78
45 46 3.630312 CAGAAGACCCACGGAAAAAGAAA 59.370 43.478 0.00 0.00 0.00 2.52
46 47 3.211045 CAGAAGACCCACGGAAAAAGAA 58.789 45.455 0.00 0.00 0.00 2.52
47 48 2.171870 ACAGAAGACCCACGGAAAAAGA 59.828 45.455 0.00 0.00 0.00 2.52
48 49 2.290641 CACAGAAGACCCACGGAAAAAG 59.709 50.000 0.00 0.00 0.00 2.27
49 50 2.092861 TCACAGAAGACCCACGGAAAAA 60.093 45.455 0.00 0.00 0.00 1.94
50 51 1.487142 TCACAGAAGACCCACGGAAAA 59.513 47.619 0.00 0.00 0.00 2.29
51 52 1.124780 TCACAGAAGACCCACGGAAA 58.875 50.000 0.00 0.00 0.00 3.13
52 53 1.348064 ATCACAGAAGACCCACGGAA 58.652 50.000 0.00 0.00 0.00 4.30
53 54 2.100197 CTATCACAGAAGACCCACGGA 58.900 52.381 0.00 0.00 0.00 4.69
54 55 1.825474 ACTATCACAGAAGACCCACGG 59.175 52.381 0.00 0.00 0.00 4.94
55 56 3.695060 ACTACTATCACAGAAGACCCACG 59.305 47.826 0.00 0.00 0.00 4.94
56 57 4.463186 ACACTACTATCACAGAAGACCCAC 59.537 45.833 0.00 0.00 0.00 4.61
57 58 4.673968 ACACTACTATCACAGAAGACCCA 58.326 43.478 0.00 0.00 0.00 4.51
58 59 5.047235 ACAACACTACTATCACAGAAGACCC 60.047 44.000 0.00 0.00 0.00 4.46
59 60 6.026947 ACAACACTACTATCACAGAAGACC 57.973 41.667 0.00 0.00 0.00 3.85
60 61 5.795939 CGACAACACTACTATCACAGAAGAC 59.204 44.000 0.00 0.00 0.00 3.01
61 62 5.106277 CCGACAACACTACTATCACAGAAGA 60.106 44.000 0.00 0.00 0.00 2.87
62 63 5.096169 CCGACAACACTACTATCACAGAAG 58.904 45.833 0.00 0.00 0.00 2.85
63 64 4.521639 ACCGACAACACTACTATCACAGAA 59.478 41.667 0.00 0.00 0.00 3.02
64 65 4.077108 ACCGACAACACTACTATCACAGA 58.923 43.478 0.00 0.00 0.00 3.41
65 66 4.436242 ACCGACAACACTACTATCACAG 57.564 45.455 0.00 0.00 0.00 3.66
66 67 4.321452 GGAACCGACAACACTACTATCACA 60.321 45.833 0.00 0.00 0.00 3.58
67 68 4.171754 GGAACCGACAACACTACTATCAC 58.828 47.826 0.00 0.00 0.00 3.06
68 69 3.827876 TGGAACCGACAACACTACTATCA 59.172 43.478 0.00 0.00 0.00 2.15
69 70 4.082354 AGTGGAACCGACAACACTACTATC 60.082 45.833 0.00 0.00 41.95 2.08
70 71 3.830755 AGTGGAACCGACAACACTACTAT 59.169 43.478 0.00 0.00 41.95 2.12
71 72 3.225104 AGTGGAACCGACAACACTACTA 58.775 45.455 0.00 0.00 41.95 1.82
72 73 2.037144 AGTGGAACCGACAACACTACT 58.963 47.619 0.00 0.00 41.95 2.57
73 74 2.521105 AGTGGAACCGACAACACTAC 57.479 50.000 0.00 0.00 41.95 2.73
74 75 4.877378 ATAAGTGGAACCGACAACACTA 57.123 40.909 0.00 0.00 42.85 2.74
75 76 3.764237 ATAAGTGGAACCGACAACACT 57.236 42.857 0.00 0.00 45.34 3.55
76 77 5.172934 TCATATAAGTGGAACCGACAACAC 58.827 41.667 0.00 0.00 37.80 3.32
77 78 5.408880 TCATATAAGTGGAACCGACAACA 57.591 39.130 0.00 0.00 37.80 3.33
78 79 6.730960 TTTCATATAAGTGGAACCGACAAC 57.269 37.500 0.00 0.00 37.80 3.32
79 80 7.608376 TGAATTTCATATAAGTGGAACCGACAA 59.392 33.333 0.00 0.00 37.80 3.18
80 81 7.065324 GTGAATTTCATATAAGTGGAACCGACA 59.935 37.037 1.78 0.00 37.80 4.35
81 82 7.065324 TGTGAATTTCATATAAGTGGAACCGAC 59.935 37.037 1.78 0.00 37.80 4.79
82 83 7.106890 TGTGAATTTCATATAAGTGGAACCGA 58.893 34.615 1.78 0.00 37.80 4.69
83 84 7.315247 TGTGAATTTCATATAAGTGGAACCG 57.685 36.000 1.78 0.00 37.80 4.44
84 85 9.573133 CTTTGTGAATTTCATATAAGTGGAACC 57.427 33.333 1.78 0.00 37.80 3.62
94 95 7.864379 GCGGATCAATCTTTGTGAATTTCATAT 59.136 33.333 1.78 0.00 0.00 1.78
95 96 7.067372 AGCGGATCAATCTTTGTGAATTTCATA 59.933 33.333 1.78 0.00 0.00 2.15
96 97 6.038356 GCGGATCAATCTTTGTGAATTTCAT 58.962 36.000 1.78 0.00 0.00 2.57
97 98 5.183713 AGCGGATCAATCTTTGTGAATTTCA 59.816 36.000 0.00 0.00 0.00 2.69
98 99 5.514204 CAGCGGATCAATCTTTGTGAATTTC 59.486 40.000 0.00 0.00 0.00 2.17
99 100 5.404946 CAGCGGATCAATCTTTGTGAATTT 58.595 37.500 0.00 0.00 0.00 1.82
100 101 4.676196 GCAGCGGATCAATCTTTGTGAATT 60.676 41.667 0.00 0.00 0.00 2.17
101 102 3.181493 GCAGCGGATCAATCTTTGTGAAT 60.181 43.478 0.00 0.00 0.00 2.57
102 103 2.162208 GCAGCGGATCAATCTTTGTGAA 59.838 45.455 0.00 0.00 0.00 3.18
103 104 1.739466 GCAGCGGATCAATCTTTGTGA 59.261 47.619 0.00 0.00 0.00 3.58
104 105 1.469703 TGCAGCGGATCAATCTTTGTG 59.530 47.619 0.00 0.00 0.00 3.33
105 106 1.825090 TGCAGCGGATCAATCTTTGT 58.175 45.000 0.00 0.00 0.00 2.83
106 107 2.479049 CCTTGCAGCGGATCAATCTTTG 60.479 50.000 0.00 0.00 0.00 2.77
107 108 1.747355 CCTTGCAGCGGATCAATCTTT 59.253 47.619 0.00 0.00 0.00 2.52
108 109 1.340405 ACCTTGCAGCGGATCAATCTT 60.340 47.619 10.72 0.00 0.00 2.40
109 110 0.254178 ACCTTGCAGCGGATCAATCT 59.746 50.000 10.72 0.00 0.00 2.40
110 111 1.064654 GAACCTTGCAGCGGATCAATC 59.935 52.381 10.72 0.00 0.00 2.67
111 112 1.098050 GAACCTTGCAGCGGATCAAT 58.902 50.000 10.72 0.00 0.00 2.57
112 113 0.250684 TGAACCTTGCAGCGGATCAA 60.251 50.000 12.59 0.78 31.42 2.57
113 114 0.250684 TTGAACCTTGCAGCGGATCA 60.251 50.000 11.41 11.41 32.34 2.92
114 115 0.881118 TTTGAACCTTGCAGCGGATC 59.119 50.000 10.72 8.83 0.00 3.36
115 116 1.549203 ATTTGAACCTTGCAGCGGAT 58.451 45.000 10.72 0.00 0.00 4.18
116 117 2.192664 TATTTGAACCTTGCAGCGGA 57.807 45.000 10.72 0.00 0.00 5.54
117 118 3.508744 AATATTTGAACCTTGCAGCGG 57.491 42.857 2.82 2.82 0.00 5.52
118 119 4.096382 ACCTAATATTTGAACCTTGCAGCG 59.904 41.667 0.00 0.00 0.00 5.18
119 120 5.582689 ACCTAATATTTGAACCTTGCAGC 57.417 39.130 0.00 0.00 0.00 5.25
120 121 8.450578 TCATACCTAATATTTGAACCTTGCAG 57.549 34.615 0.00 0.00 0.00 4.41
121 122 8.815565 TTCATACCTAATATTTGAACCTTGCA 57.184 30.769 0.00 0.00 0.00 4.08
132 133 8.909923 CCGTTTCCCTTTTTCATACCTAATATT 58.090 33.333 0.00 0.00 0.00 1.28
133 134 8.276477 TCCGTTTCCCTTTTTCATACCTAATAT 58.724 33.333 0.00 0.00 0.00 1.28
134 135 7.631933 TCCGTTTCCCTTTTTCATACCTAATA 58.368 34.615 0.00 0.00 0.00 0.98
135 136 6.486941 TCCGTTTCCCTTTTTCATACCTAAT 58.513 36.000 0.00 0.00 0.00 1.73
136 137 5.878627 TCCGTTTCCCTTTTTCATACCTAA 58.121 37.500 0.00 0.00 0.00 2.69
137 138 5.502089 TCCGTTTCCCTTTTTCATACCTA 57.498 39.130 0.00 0.00 0.00 3.08
138 139 4.376225 TCCGTTTCCCTTTTTCATACCT 57.624 40.909 0.00 0.00 0.00 3.08
157 158 3.740832 CCCTTTGCTTTTGTTTCGATTCC 59.259 43.478 0.00 0.00 0.00 3.01
158 159 4.368315 ACCCTTTGCTTTTGTTTCGATTC 58.632 39.130 0.00 0.00 0.00 2.52
169 170 3.741075 GCTTTGCTTGTACCCTTTGCTTT 60.741 43.478 0.00 0.00 0.00 3.51
172 174 1.605457 GGCTTTGCTTGTACCCTTTGC 60.605 52.381 0.00 0.00 0.00 3.68
179 181 2.287608 GGACTGTTGGCTTTGCTTGTAC 60.288 50.000 0.00 0.00 0.00 2.90
190 192 3.081061 TGATTATGTGTGGACTGTTGGC 58.919 45.455 0.00 0.00 0.00 4.52
192 194 4.336433 GGGATGATTATGTGTGGACTGTTG 59.664 45.833 0.00 0.00 0.00 3.33
197 199 3.576078 TGGGGATGATTATGTGTGGAC 57.424 47.619 0.00 0.00 0.00 4.02
214 216 1.908299 GGCACAGGGTTCCTTTGGG 60.908 63.158 2.78 0.00 32.45 4.12
238 240 6.441924 AGTCTTTCTTCTCAATCCATACCTCA 59.558 38.462 0.00 0.00 0.00 3.86
242 244 8.254508 ACACTAGTCTTTCTTCTCAATCCATAC 58.745 37.037 0.00 0.00 0.00 2.39
243 245 8.367660 ACACTAGTCTTTCTTCTCAATCCATA 57.632 34.615 0.00 0.00 0.00 2.74
244 246 7.251321 ACACTAGTCTTTCTTCTCAATCCAT 57.749 36.000 0.00 0.00 0.00 3.41
318 329 4.764679 TCAAGATGGGAAAACGTCATTG 57.235 40.909 0.00 0.00 0.00 2.82
324 335 4.697352 AGTCAAGATCAAGATGGGAAAACG 59.303 41.667 0.00 0.00 0.00 3.60
385 398 6.783708 AGATGGGAAAACGGCATTTATTTA 57.216 33.333 0.00 0.00 0.00 1.40
421 435 8.889717 CATTTATGTTAACCGATTAGAGTTGGT 58.110 33.333 2.48 0.00 37.48 3.67
428 442 9.940166 GGTTAACCATTTATGTTAACCGATTAG 57.060 33.333 22.16 0.00 46.73 1.73
450 464 8.383524 TCGTTAGCGCTAGACCTAAATAGGTTA 61.384 40.741 17.98 7.26 46.44 2.85
464 478 1.194896 GCACGACTCGTTAGCGCTAG 61.195 60.000 17.98 10.44 38.32 3.42
508 522 7.064490 AGCAACCTAAAAACAAACAATGTCAAG 59.936 33.333 0.00 0.00 42.99 3.02
509 523 6.876257 AGCAACCTAAAAACAAACAATGTCAA 59.124 30.769 0.00 0.00 42.99 3.18
510 524 6.402222 AGCAACCTAAAAACAAACAATGTCA 58.598 32.000 0.00 0.00 42.99 3.58
511 525 6.902224 AGCAACCTAAAAACAAACAATGTC 57.098 33.333 0.00 0.00 42.99 3.06
512 526 8.038351 ACTAAGCAACCTAAAAACAAACAATGT 58.962 29.630 0.00 0.00 46.82 2.71
513 527 8.419076 ACTAAGCAACCTAAAAACAAACAATG 57.581 30.769 0.00 0.00 0.00 2.82
514 528 8.878769 CAACTAAGCAACCTAAAAACAAACAAT 58.121 29.630 0.00 0.00 0.00 2.71
515 529 7.332182 CCAACTAAGCAACCTAAAAACAAACAA 59.668 33.333 0.00 0.00 0.00 2.83
516 530 6.814146 CCAACTAAGCAACCTAAAAACAAACA 59.186 34.615 0.00 0.00 0.00 2.83
517 531 6.237996 GCCAACTAAGCAACCTAAAAACAAAC 60.238 38.462 0.00 0.00 0.00 2.93
518 532 5.813157 GCCAACTAAGCAACCTAAAAACAAA 59.187 36.000 0.00 0.00 0.00 2.83
519 533 5.128008 AGCCAACTAAGCAACCTAAAAACAA 59.872 36.000 0.00 0.00 0.00 2.83
520 534 4.647399 AGCCAACTAAGCAACCTAAAAACA 59.353 37.500 0.00 0.00 0.00 2.83
521 535 5.196341 AGCCAACTAAGCAACCTAAAAAC 57.804 39.130 0.00 0.00 0.00 2.43
522 536 5.862678 AAGCCAACTAAGCAACCTAAAAA 57.137 34.783 0.00 0.00 0.00 1.94
523 537 6.066032 AGTAAGCCAACTAAGCAACCTAAAA 58.934 36.000 0.00 0.00 0.00 1.52
524 538 5.627135 AGTAAGCCAACTAAGCAACCTAAA 58.373 37.500 0.00 0.00 0.00 1.85
525 539 5.012768 AGAGTAAGCCAACTAAGCAACCTAA 59.987 40.000 0.00 0.00 0.00 2.69
526 540 4.530946 AGAGTAAGCCAACTAAGCAACCTA 59.469 41.667 0.00 0.00 0.00 3.08
527 541 3.328050 AGAGTAAGCCAACTAAGCAACCT 59.672 43.478 0.00 0.00 0.00 3.50
528 542 3.676093 AGAGTAAGCCAACTAAGCAACC 58.324 45.455 0.00 0.00 0.00 3.77
529 543 6.594159 TGATAAGAGTAAGCCAACTAAGCAAC 59.406 38.462 0.00 0.00 0.00 4.17
530 544 6.707290 TGATAAGAGTAAGCCAACTAAGCAA 58.293 36.000 0.00 0.00 0.00 3.91
531 545 6.294361 TGATAAGAGTAAGCCAACTAAGCA 57.706 37.500 0.00 0.00 0.00 3.91
532 546 6.819146 ACTTGATAAGAGTAAGCCAACTAAGC 59.181 38.462 0.00 0.00 0.00 3.09
533 547 8.035394 TGACTTGATAAGAGTAAGCCAACTAAG 58.965 37.037 0.00 0.00 0.00 2.18
549 563 7.972832 ACGGTGTAGAATTTTGACTTGATAA 57.027 32.000 0.00 0.00 0.00 1.75
589 603 2.295909 CTCTCGGATTGGGTTGCAAAAA 59.704 45.455 0.00 0.00 0.00 1.94
590 604 1.885887 CTCTCGGATTGGGTTGCAAAA 59.114 47.619 0.00 0.00 0.00 2.44
591 605 1.533625 CTCTCGGATTGGGTTGCAAA 58.466 50.000 0.00 0.00 0.00 3.68
592 606 0.960364 GCTCTCGGATTGGGTTGCAA 60.960 55.000 0.00 0.00 0.00 4.08
593 607 1.377202 GCTCTCGGATTGGGTTGCA 60.377 57.895 0.00 0.00 0.00 4.08
594 608 0.678048 AAGCTCTCGGATTGGGTTGC 60.678 55.000 0.00 0.00 0.00 4.17
595 609 1.826385 AAAGCTCTCGGATTGGGTTG 58.174 50.000 0.00 0.00 0.00 3.77
596 610 2.586648 AAAAGCTCTCGGATTGGGTT 57.413 45.000 0.00 0.00 0.00 4.11
597 611 3.933861 ATAAAAGCTCTCGGATTGGGT 57.066 42.857 0.00 0.00 0.00 4.51
598 612 4.199310 TGAATAAAAGCTCTCGGATTGGG 58.801 43.478 0.00 0.00 0.00 4.12
599 613 5.123820 TGTTGAATAAAAGCTCTCGGATTGG 59.876 40.000 0.00 0.00 0.00 3.16
600 614 6.182039 TGTTGAATAAAAGCTCTCGGATTG 57.818 37.500 0.00 0.00 0.00 2.67
601 615 6.817765 TTGTTGAATAAAAGCTCTCGGATT 57.182 33.333 0.00 0.00 0.00 3.01
602 616 6.817765 TTTGTTGAATAAAAGCTCTCGGAT 57.182 33.333 0.00 0.00 0.00 4.18
603 617 6.627395 TTTTGTTGAATAAAAGCTCTCGGA 57.373 33.333 0.00 0.00 0.00 4.55
604 618 6.918043 CTTTTGTTGAATAAAAGCTCTCGG 57.082 37.500 12.95 0.00 38.03 4.63
611 625 7.327032 GCTAGGAGTGCTTTTGTTGAATAAAAG 59.673 37.037 18.89 18.89 44.16 2.27
612 626 7.145323 GCTAGGAGTGCTTTTGTTGAATAAAA 58.855 34.615 0.10 0.10 0.00 1.52
613 627 6.264292 TGCTAGGAGTGCTTTTGTTGAATAAA 59.736 34.615 0.00 0.00 0.00 1.40
614 628 5.767665 TGCTAGGAGTGCTTTTGTTGAATAA 59.232 36.000 0.00 0.00 0.00 1.40
615 629 5.312895 TGCTAGGAGTGCTTTTGTTGAATA 58.687 37.500 0.00 0.00 0.00 1.75
616 630 4.144297 TGCTAGGAGTGCTTTTGTTGAAT 58.856 39.130 0.00 0.00 0.00 2.57
617 631 3.550820 TGCTAGGAGTGCTTTTGTTGAA 58.449 40.909 0.00 0.00 0.00 2.69
618 632 3.207265 TGCTAGGAGTGCTTTTGTTGA 57.793 42.857 0.00 0.00 0.00 3.18
619 633 3.503363 TGATGCTAGGAGTGCTTTTGTTG 59.497 43.478 0.00 0.00 0.00 3.33
620 634 3.754965 TGATGCTAGGAGTGCTTTTGTT 58.245 40.909 0.00 0.00 0.00 2.83
621 635 3.423539 TGATGCTAGGAGTGCTTTTGT 57.576 42.857 0.00 0.00 0.00 2.83
622 636 3.314635 GGATGATGCTAGGAGTGCTTTTG 59.685 47.826 0.00 0.00 0.00 2.44
623 637 3.054139 TGGATGATGCTAGGAGTGCTTTT 60.054 43.478 0.00 0.00 0.00 2.27
624 638 2.507058 TGGATGATGCTAGGAGTGCTTT 59.493 45.455 0.00 0.00 0.00 3.51
625 639 2.121948 TGGATGATGCTAGGAGTGCTT 58.878 47.619 0.00 0.00 0.00 3.91
626 640 1.415659 GTGGATGATGCTAGGAGTGCT 59.584 52.381 0.00 0.00 0.00 4.40
627 641 1.415659 AGTGGATGATGCTAGGAGTGC 59.584 52.381 0.00 0.00 0.00 4.40
628 642 6.596309 TTATAGTGGATGATGCTAGGAGTG 57.404 41.667 0.00 0.00 0.00 3.51
629 643 7.071196 TGTTTTATAGTGGATGATGCTAGGAGT 59.929 37.037 0.00 0.00 0.00 3.85
630 644 7.386299 GTGTTTTATAGTGGATGATGCTAGGAG 59.614 40.741 0.00 0.00 0.00 3.69
631 645 7.147567 TGTGTTTTATAGTGGATGATGCTAGGA 60.148 37.037 0.00 0.00 0.00 2.94
632 646 6.992123 TGTGTTTTATAGTGGATGATGCTAGG 59.008 38.462 0.00 0.00 0.00 3.02
633 647 7.306807 CGTGTGTTTTATAGTGGATGATGCTAG 60.307 40.741 0.00 0.00 0.00 3.42
634 648 6.478673 CGTGTGTTTTATAGTGGATGATGCTA 59.521 38.462 0.00 0.00 0.00 3.49
635 649 5.294306 CGTGTGTTTTATAGTGGATGATGCT 59.706 40.000 0.00 0.00 0.00 3.79
636 650 5.064707 ACGTGTGTTTTATAGTGGATGATGC 59.935 40.000 0.00 0.00 0.00 3.91
637 651 6.312672 TGACGTGTGTTTTATAGTGGATGATG 59.687 38.462 0.00 0.00 0.00 3.07
638 652 6.403049 TGACGTGTGTTTTATAGTGGATGAT 58.597 36.000 0.00 0.00 0.00 2.45
639 653 5.785243 TGACGTGTGTTTTATAGTGGATGA 58.215 37.500 0.00 0.00 0.00 2.92
640 654 6.477742 CATGACGTGTGTTTTATAGTGGATG 58.522 40.000 0.00 0.00 0.00 3.51
641 655 5.064707 GCATGACGTGTGTTTTATAGTGGAT 59.935 40.000 0.00 0.00 0.00 3.41
642 656 4.390603 GCATGACGTGTGTTTTATAGTGGA 59.609 41.667 0.00 0.00 0.00 4.02
657 671 1.354337 CGTTAGCTGCAGCATGACGT 61.354 55.000 38.24 20.37 45.16 4.34
661 675 1.969809 TTCGCGTTAGCTGCAGCATG 61.970 55.000 38.24 24.93 45.16 4.06
666 680 0.732880 GAGACTTCGCGTTAGCTGCA 60.733 55.000 5.77 0.00 42.32 4.41
671 685 1.662629 TCTACGGAGACTTCGCGTTAG 59.337 52.381 5.77 7.77 33.98 2.34
705 719 9.643693 CAACTACTTTTATCTACGACCCTAAAA 57.356 33.333 0.00 0.00 0.00 1.52
706 720 9.023962 TCAACTACTTTTATCTACGACCCTAAA 57.976 33.333 0.00 0.00 0.00 1.85
707 721 8.579850 TCAACTACTTTTATCTACGACCCTAA 57.420 34.615 0.00 0.00 0.00 2.69
708 722 8.627403 CATCAACTACTTTTATCTACGACCCTA 58.373 37.037 0.00 0.00 0.00 3.53
709 723 7.341256 TCATCAACTACTTTTATCTACGACCCT 59.659 37.037 0.00 0.00 0.00 4.34
710 724 7.486647 TCATCAACTACTTTTATCTACGACCC 58.513 38.462 0.00 0.00 0.00 4.46
711 725 8.922058 TTCATCAACTACTTTTATCTACGACC 57.078 34.615 0.00 0.00 0.00 4.79
719 733 9.825972 CGTCAACATTTCATCAACTACTTTTAT 57.174 29.630 0.00 0.00 0.00 1.40
720 734 7.801315 GCGTCAACATTTCATCAACTACTTTTA 59.199 33.333 0.00 0.00 0.00 1.52
721 735 6.636850 GCGTCAACATTTCATCAACTACTTTT 59.363 34.615 0.00 0.00 0.00 2.27
722 736 6.142817 GCGTCAACATTTCATCAACTACTTT 58.857 36.000 0.00 0.00 0.00 2.66
723 737 5.614668 CGCGTCAACATTTCATCAACTACTT 60.615 40.000 0.00 0.00 0.00 2.24
724 738 4.143115 CGCGTCAACATTTCATCAACTACT 60.143 41.667 0.00 0.00 0.00 2.57
725 739 4.081761 CGCGTCAACATTTCATCAACTAC 58.918 43.478 0.00 0.00 0.00 2.73
726 740 3.743911 ACGCGTCAACATTTCATCAACTA 59.256 39.130 5.58 0.00 0.00 2.24
727 741 2.548057 ACGCGTCAACATTTCATCAACT 59.452 40.909 5.58 0.00 0.00 3.16
728 742 2.916111 ACGCGTCAACATTTCATCAAC 58.084 42.857 5.58 0.00 0.00 3.18
729 743 3.002759 TGAACGCGTCAACATTTCATCAA 59.997 39.130 14.44 0.00 31.51 2.57
730 744 2.545946 TGAACGCGTCAACATTTCATCA 59.454 40.909 14.44 5.39 31.51 3.07
739 753 0.669318 TGGATCCTGAACGCGTCAAC 60.669 55.000 14.44 8.22 35.22 3.18
768 782 3.109230 TCGTCTAACGACTAGTTTCGC 57.891 47.619 0.00 0.00 46.73 4.70
809 832 2.728435 GCGTCCTGGGATTACGGGT 61.728 63.158 7.62 0.00 38.12 5.28
835 859 2.092838 CGAGTTTGATTCCTTCTCGCAC 59.907 50.000 0.00 0.00 40.65 5.34
889 921 0.109504 GAGACCAGTCTGTCAGCGAC 60.110 60.000 4.74 2.32 40.61 5.19
1037 1075 1.299939 GAATTGGGAAGGAGGGAGGT 58.700 55.000 0.00 0.00 0.00 3.85
1090 1137 1.084370 GCTTTGGATCTGCGCGTAGT 61.084 55.000 23.58 11.28 0.00 2.73
1092 1139 0.461870 ATGCTTTGGATCTGCGCGTA 60.462 50.000 8.43 0.71 0.00 4.42
1093 1140 1.308069 AATGCTTTGGATCTGCGCGT 61.308 50.000 8.43 0.00 0.00 6.01
1094 1141 0.590732 GAATGCTTTGGATCTGCGCG 60.591 55.000 0.00 0.00 0.00 6.86
1095 1142 0.590732 CGAATGCTTTGGATCTGCGC 60.591 55.000 0.00 0.00 0.00 6.09
1125 1179 0.689412 GACTTGGAGAGGAGAGGGGG 60.689 65.000 0.00 0.00 0.00 5.40
1145 1199 2.629656 CGGTGAAAGCCTTGCCTGG 61.630 63.158 0.00 0.00 0.00 4.45
1147 1201 1.600916 GACGGTGAAAGCCTTGCCT 60.601 57.895 0.00 0.00 0.00 4.75
1745 1894 6.989169 AGAGCAGCTTGTAAGAATTATACTGG 59.011 38.462 0.00 0.00 30.46 4.00
1775 1928 1.268999 TGCCGTTTGAACAACATGCTC 60.269 47.619 0.00 0.00 0.00 4.26
1830 1984 2.816411 TCCCACTCCCAACTAGTAGTG 58.184 52.381 14.20 14.20 39.22 2.74
1838 1992 1.328279 CTGGTTTTCCCACTCCCAAC 58.672 55.000 0.00 0.00 38.72 3.77
1864 2018 9.074576 TCAGTTTACTCTGTTCTACAATAGTCA 57.925 33.333 0.00 0.00 36.85 3.41
1871 2025 4.581824 ACGGTCAGTTTACTCTGTTCTACA 59.418 41.667 0.00 0.00 36.85 2.74
1945 2099 1.735018 TGGTTCTTTGACACACACACG 59.265 47.619 0.00 0.00 0.00 4.49
2011 2175 3.515502 TCACCCCTCATTCTGTAGTTCAG 59.484 47.826 0.00 0.00 44.85 3.02
2038 2202 1.465187 GCACGAATAACAAACCGAGGC 60.465 52.381 0.00 0.00 0.00 4.70
2094 2258 9.833917 CTCTATACTGCCATGATTGATGAATAT 57.166 33.333 0.00 0.00 33.31 1.28
2141 2305 5.975988 ATGGTTCCTAGACATGGTTGTAT 57.024 39.130 0.00 0.00 35.79 2.29
2145 2309 5.193679 GCTTAATGGTTCCTAGACATGGTT 58.806 41.667 0.00 0.00 0.00 3.67
2149 2313 4.694339 GTCGCTTAATGGTTCCTAGACAT 58.306 43.478 0.00 0.00 0.00 3.06
2150 2314 3.428452 CGTCGCTTAATGGTTCCTAGACA 60.428 47.826 0.00 0.00 0.00 3.41
2151 2315 3.114065 CGTCGCTTAATGGTTCCTAGAC 58.886 50.000 0.00 0.00 0.00 2.59
2152 2316 3.018856 TCGTCGCTTAATGGTTCCTAGA 58.981 45.455 0.00 0.00 0.00 2.43
2153 2317 3.114065 GTCGTCGCTTAATGGTTCCTAG 58.886 50.000 0.00 0.00 0.00 3.02
2154 2318 2.756760 AGTCGTCGCTTAATGGTTCCTA 59.243 45.455 0.00 0.00 0.00 2.94
2155 2319 1.549170 AGTCGTCGCTTAATGGTTCCT 59.451 47.619 0.00 0.00 0.00 3.36
2156 2320 2.005971 AGTCGTCGCTTAATGGTTCC 57.994 50.000 0.00 0.00 0.00 3.62
2157 2321 4.357142 TGATAGTCGTCGCTTAATGGTTC 58.643 43.478 0.00 0.00 0.00 3.62
2158 2322 4.380841 TGATAGTCGTCGCTTAATGGTT 57.619 40.909 0.00 0.00 0.00 3.67
2159 2323 4.110482 GTTGATAGTCGTCGCTTAATGGT 58.890 43.478 0.00 0.00 0.00 3.55
2160 2324 4.026804 GTGTTGATAGTCGTCGCTTAATGG 60.027 45.833 0.00 0.00 0.00 3.16
2161 2325 4.798907 AGTGTTGATAGTCGTCGCTTAATG 59.201 41.667 0.00 0.00 0.00 1.90
2162 2326 4.798907 CAGTGTTGATAGTCGTCGCTTAAT 59.201 41.667 0.00 0.00 0.00 1.40
2163 2327 4.163552 CAGTGTTGATAGTCGTCGCTTAA 58.836 43.478 0.00 0.00 0.00 1.85
2164 2328 3.427098 CCAGTGTTGATAGTCGTCGCTTA 60.427 47.826 0.00 0.00 0.00 3.09
2165 2329 2.596452 CAGTGTTGATAGTCGTCGCTT 58.404 47.619 0.00 0.00 0.00 4.68
2198 2362 2.435234 TAATGACGGTGGTGCGCC 60.435 61.111 10.11 10.11 0.00 6.53
2200 2364 2.104253 GGGTAATGACGGTGGTGCG 61.104 63.158 0.00 0.00 0.00 5.34
2202 2366 0.326927 AAGGGGTAATGACGGTGGTG 59.673 55.000 0.00 0.00 0.00 4.17
2203 2367 1.003928 GAAAGGGGTAATGACGGTGGT 59.996 52.381 0.00 0.00 0.00 4.16
2209 2373 3.263425 TCCAGTGAGAAAGGGGTAATGAC 59.737 47.826 0.00 0.00 0.00 3.06
2215 2379 1.492993 GGCTCCAGTGAGAAAGGGGT 61.493 60.000 0.00 0.00 41.42 4.95
2217 2381 0.035630 CTGGCTCCAGTGAGAAAGGG 60.036 60.000 7.75 0.00 41.42 3.95
2221 2385 2.015456 TTCTCTGGCTCCAGTGAGAA 57.985 50.000 17.03 15.18 44.09 2.87
2222 2386 1.620819 GTTTCTCTGGCTCCAGTGAGA 59.379 52.381 17.03 12.15 44.09 3.27
2227 2391 3.922171 ATAAGGTTTCTCTGGCTCCAG 57.078 47.619 9.61 9.61 44.86 3.86
2235 2399 8.653036 ACTGTCTACTACAATAAGGTTTCTCT 57.347 34.615 0.00 0.00 37.74 3.10
2238 2402 7.533426 TCGACTGTCTACTACAATAAGGTTTC 58.467 38.462 6.21 0.00 37.74 2.78
2246 2410 5.124138 CCACTTCTCGACTGTCTACTACAAT 59.876 44.000 6.21 0.00 37.74 2.71
2259 2423 0.520404 TAGCACGACCACTTCTCGAC 59.480 55.000 0.00 0.00 35.08 4.20
2270 2434 3.863142 TCTTTAGGGTCTTAGCACGAC 57.137 47.619 0.00 0.00 0.00 4.34
2281 2445 2.976882 TGGTGCACTAGTTCTTTAGGGT 59.023 45.455 17.98 0.00 0.00 4.34
2284 2448 3.929610 GCTCTGGTGCACTAGTTCTTTAG 59.070 47.826 27.01 17.60 0.00 1.85
2288 2452 1.274728 CTGCTCTGGTGCACTAGTTCT 59.725 52.381 27.01 0.00 38.12 3.01
2290 2454 0.322975 CCTGCTCTGGTGCACTAGTT 59.677 55.000 27.01 0.00 38.12 2.24
2293 2457 0.321671 GTTCCTGCTCTGGTGCACTA 59.678 55.000 17.98 10.29 38.12 2.74
2305 2469 2.203070 ATCGGCGATGGTTCCTGC 60.203 61.111 23.36 0.00 0.00 4.85
2306 2470 0.461870 TTCATCGGCGATGGTTCCTG 60.462 55.000 39.82 21.57 40.15 3.86
2342 2506 9.458374 CTTCGTGTGGTTACAAATTTAATCTTT 57.542 29.630 0.00 0.00 38.82 2.52
2348 2512 6.766944 TCTTCCTTCGTGTGGTTACAAATTTA 59.233 34.615 0.00 0.00 38.82 1.40
2353 2517 3.460103 GTCTTCCTTCGTGTGGTTACAA 58.540 45.455 0.00 0.00 38.82 2.41
2363 2527 3.377798 GGATCTAGTTCGTCTTCCTTCGT 59.622 47.826 0.00 0.00 0.00 3.85
2368 2532 7.040473 TCTATTTGGATCTAGTTCGTCTTCC 57.960 40.000 0.00 0.00 0.00 3.46
2385 2549 4.438744 GCTGGTTTTCGGTGGATCTATTTG 60.439 45.833 0.00 0.00 0.00 2.32
2391 2555 0.521735 GTGCTGGTTTTCGGTGGATC 59.478 55.000 0.00 0.00 0.00 3.36
2412 2576 1.379527 GGATTTCGCGGGATTCAGTT 58.620 50.000 6.13 0.00 0.00 3.16
2415 2579 0.105964 ATCGGATTTCGCGGGATTCA 59.894 50.000 6.13 0.00 39.05 2.57
2423 2587 0.931005 GTGTCTCCATCGGATTTCGC 59.069 55.000 0.00 0.00 39.05 4.70
2440 2604 4.384056 GTCCAATGATATCTGGAGGTGTG 58.616 47.826 12.75 0.00 42.41 3.82
2450 2614 4.263209 CGAATAGCGTCGTCCAATGATATC 59.737 45.833 0.00 0.00 36.26 1.63
2494 2658 4.819105 AGAAATAATGTCTCCCACGTCA 57.181 40.909 0.00 0.00 0.00 4.35
2502 2666 6.478344 CAGTGGCTCAGTAGAAATAATGTCTC 59.522 42.308 0.00 0.00 0.00 3.36
2547 2711 3.179443 TCTGATAAGCGGGACAATCAC 57.821 47.619 0.00 0.00 0.00 3.06
2686 2925 6.040842 AGAGCATGTTTGAGGTTTTAATGTGT 59.959 34.615 0.00 0.00 0.00 3.72
2739 2978 6.670695 AACAGGGATTTGCTAATTCTTTGT 57.329 33.333 0.00 2.47 0.00 2.83
2742 2981 5.779771 TGGAAACAGGGATTTGCTAATTCTT 59.220 36.000 0.00 0.00 35.01 2.52
2869 3344 0.400213 TCGCATGACAAAGGGTTCCT 59.600 50.000 0.00 0.00 33.87 3.36
2875 3350 3.837213 AATGACTTCGCATGACAAAGG 57.163 42.857 0.00 0.00 0.00 3.11
2961 3471 1.895798 TGTTGCAGTTTTTGTCCCACA 59.104 42.857 0.00 0.00 0.00 4.17
3050 6966 5.069318 TCAAAGGAAGCATAACACATCACA 58.931 37.500 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.