Multiple sequence alignment - TraesCS4B01G304800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G304800 chr4B 100.000 2634 0 0 1 2634 593137084 593134451 0.000000e+00 4865.0
1 TraesCS4B01G304800 chr4B 79.979 964 109 43 766 1696 593156347 593155435 3.700000e-178 634.0
2 TraesCS4B01G304800 chr4B 79.126 1030 121 55 532 1509 593198272 593197285 2.230000e-175 625.0
3 TraesCS4B01G304800 chr4B 89.894 376 38 0 1113 1488 593116735 593116360 3.940000e-133 484.0
4 TraesCS4B01G304800 chr4B 82.784 546 75 10 1112 1651 593342712 593342180 1.100000e-128 470.0
5 TraesCS4B01G304800 chr4B 80.992 121 14 5 281 393 650687235 650687116 1.300000e-13 87.9
6 TraesCS4B01G304800 chr4B 78.899 109 17 4 271 379 606869435 606869537 4.700000e-08 69.4
7 TraesCS4B01G304800 chr4B 100.000 36 0 0 312 347 593136651 593136686 1.690000e-07 67.6
8 TraesCS4B01G304800 chr4B 100.000 36 0 0 399 434 593136738 593136773 1.690000e-07 67.6
9 TraesCS4B01G304800 chr4A 90.425 1201 68 22 788 1969 678370499 678369327 0.000000e+00 1537.0
10 TraesCS4B01G304800 chr4A 95.714 560 23 1 2076 2634 678368445 678367886 0.000000e+00 900.0
11 TraesCS4B01G304800 chr4A 79.412 1088 132 52 590 1627 678374282 678373237 0.000000e+00 684.0
12 TraesCS4B01G304800 chr4A 87.671 73 6 3 46 116 678384454 678384383 6.040000e-12 82.4
13 TraesCS4B01G304800 chr4A 78.689 122 12 8 283 391 734576139 734576259 4.700000e-08 69.4
14 TraesCS4B01G304800 chr4D 90.556 720 35 10 789 1505 471154275 471153586 0.000000e+00 922.0
15 TraesCS4B01G304800 chr4D 91.725 568 19 6 2076 2634 471148685 471148137 0.000000e+00 763.0
16 TraesCS4B01G304800 chr4D 89.084 513 19 13 1511 2011 471153514 471153027 1.040000e-168 603.0
17 TraesCS4B01G304800 chr4D 80.089 894 98 39 791 1645 471217125 471216273 2.260000e-165 592.0
18 TraesCS4B01G304800 chr4D 77.526 1059 133 61 622 1629 471213141 471212137 8.290000e-150 540.0
19 TraesCS4B01G304800 chr4D 91.223 376 33 0 1113 1488 470856814 470856439 1.810000e-141 512.0
20 TraesCS4B01G304800 chr4D 84.066 546 60 8 1112 1640 471229313 471228778 3.910000e-138 501.0
21 TraesCS4B01G304800 chr4D 90.678 118 9 2 1 116 471154697 471154580 3.510000e-34 156.0
22 TraesCS4B01G304800 chr5B 79.839 124 13 6 280 391 377852722 377852845 2.170000e-11 80.5
23 TraesCS4B01G304800 chr5B 75.949 158 20 11 283 424 50231418 50231263 6.090000e-07 65.8
24 TraesCS4B01G304800 chr1D 80.000 125 11 8 283 394 2462074 2461951 2.170000e-11 80.5
25 TraesCS4B01G304800 chr6D 80.952 105 7 9 283 381 100793293 100793390 1.310000e-08 71.3
26 TraesCS4B01G304800 chr6A 78.125 128 13 8 283 398 509054402 509054278 1.690000e-07 67.6
27 TraesCS4B01G304800 chr3B 91.489 47 3 1 348 394 427338310 427338355 2.190000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G304800 chr4B 593134451 593137084 2633 True 4865.000000 4865 100.0000 1 2634 1 chr4B.!!$R2 2633
1 TraesCS4B01G304800 chr4B 593155435 593156347 912 True 634.000000 634 79.9790 766 1696 1 chr4B.!!$R3 930
2 TraesCS4B01G304800 chr4B 593197285 593198272 987 True 625.000000 625 79.1260 532 1509 1 chr4B.!!$R4 977
3 TraesCS4B01G304800 chr4B 593342180 593342712 532 True 470.000000 470 82.7840 1112 1651 1 chr4B.!!$R5 539
4 TraesCS4B01G304800 chr4A 678367886 678374282 6396 True 1040.333333 1537 88.5170 590 2634 3 chr4A.!!$R2 2044
5 TraesCS4B01G304800 chr4D 471148137 471148685 548 True 763.000000 763 91.7250 2076 2634 1 chr4D.!!$R2 558
6 TraesCS4B01G304800 chr4D 471212137 471217125 4988 True 566.000000 592 78.8075 622 1645 2 chr4D.!!$R5 1023
7 TraesCS4B01G304800 chr4D 471153027 471154697 1670 True 560.333333 922 90.1060 1 2011 3 chr4D.!!$R4 2010
8 TraesCS4B01G304800 chr4D 471228778 471229313 535 True 501.000000 501 84.0660 1112 1640 1 chr4D.!!$R3 528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
631 641 0.109723 TGGCCTACAGACCACCAAAC 59.89 55.0 3.32 0.0 0.0 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1835 7705 1.001706 GAGTTTTTCGGCAACAGGGAC 60.002 52.381 0.0 0.0 0.0 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.360192 GCCACAAGTGTGTTGCTCC 59.640 57.895 10.40 0.00 41.92 4.70
36 38 8.474831 GTGTTGCTCCCCAATATAAACTAAAAT 58.525 33.333 0.00 0.00 35.55 1.82
37 39 9.041354 TGTTGCTCCCCAATATAAACTAAAATT 57.959 29.630 0.00 0.00 35.55 1.82
41 43 8.150296 GCTCCCCAATATAAACTAAAATTGCAT 58.850 33.333 0.00 0.00 0.00 3.96
42 44 9.480053 CTCCCCAATATAAACTAAAATTGCATG 57.520 33.333 0.00 0.00 0.00 4.06
44 46 9.260002 CCCCAATATAAACTAAAATTGCATGTC 57.740 33.333 0.00 0.00 0.00 3.06
60 62 0.904649 TGTCTGTATGGGTCCTGCAG 59.095 55.000 6.78 6.78 0.00 4.41
61 63 1.195115 GTCTGTATGGGTCCTGCAGA 58.805 55.000 17.39 0.00 34.30 4.26
97 100 0.810031 GAGCGATGTGTTATGCCCGT 60.810 55.000 0.00 0.00 0.00 5.28
164 167 7.899648 TGTCAAAAAGGTCAAAATAAGGGTA 57.100 32.000 0.00 0.00 0.00 3.69
165 168 7.947282 TGTCAAAAAGGTCAAAATAAGGGTAG 58.053 34.615 0.00 0.00 0.00 3.18
166 169 7.780745 TGTCAAAAAGGTCAAAATAAGGGTAGA 59.219 33.333 0.00 0.00 0.00 2.59
167 170 8.635328 GTCAAAAAGGTCAAAATAAGGGTAGAA 58.365 33.333 0.00 0.00 0.00 2.10
168 171 9.203163 TCAAAAAGGTCAAAATAAGGGTAGAAA 57.797 29.630 0.00 0.00 0.00 2.52
169 172 9.256477 CAAAAAGGTCAAAATAAGGGTAGAAAC 57.744 33.333 0.00 0.00 0.00 2.78
170 173 8.777578 AAAAGGTCAAAATAAGGGTAGAAACT 57.222 30.769 0.00 0.00 0.00 2.66
171 174 9.871175 AAAAGGTCAAAATAAGGGTAGAAACTA 57.129 29.630 0.00 0.00 0.00 2.24
172 175 9.516546 AAAGGTCAAAATAAGGGTAGAAACTAG 57.483 33.333 0.00 0.00 0.00 2.57
173 176 8.445361 AGGTCAAAATAAGGGTAGAAACTAGA 57.555 34.615 0.00 0.00 0.00 2.43
174 177 8.887393 AGGTCAAAATAAGGGTAGAAACTAGAA 58.113 33.333 0.00 0.00 0.00 2.10
175 178 9.682465 GGTCAAAATAAGGGTAGAAACTAGAAT 57.318 33.333 0.00 0.00 0.00 2.40
184 187 9.642343 AAGGGTAGAAACTAGAATTCACTTTTT 57.358 29.630 8.44 1.45 0.00 1.94
185 188 9.286170 AGGGTAGAAACTAGAATTCACTTTTTC 57.714 33.333 8.44 10.19 0.00 2.29
186 189 9.286170 GGGTAGAAACTAGAATTCACTTTTTCT 57.714 33.333 19.56 19.56 36.24 2.52
190 193 8.138074 AGAAACTAGAATTCACTTTTTCTTGGC 58.862 33.333 8.44 0.00 32.30 4.52
191 194 6.959639 ACTAGAATTCACTTTTTCTTGGCA 57.040 33.333 8.44 0.00 34.22 4.92
192 195 6.974965 ACTAGAATTCACTTTTTCTTGGCAG 58.025 36.000 8.44 0.00 34.22 4.85
193 196 4.625028 AGAATTCACTTTTTCTTGGCAGC 58.375 39.130 8.44 0.00 0.00 5.25
194 197 2.888834 TTCACTTTTTCTTGGCAGCC 57.111 45.000 3.66 3.66 0.00 4.85
195 198 2.071778 TCACTTTTTCTTGGCAGCCT 57.928 45.000 14.15 0.00 0.00 4.58
196 199 3.222173 TCACTTTTTCTTGGCAGCCTA 57.778 42.857 14.15 3.69 0.00 3.93
197 200 2.884639 TCACTTTTTCTTGGCAGCCTAC 59.115 45.455 14.15 0.00 0.00 3.18
198 201 2.029918 CACTTTTTCTTGGCAGCCTACC 60.030 50.000 14.15 0.00 0.00 3.18
199 202 2.238521 CTTTTTCTTGGCAGCCTACCA 58.761 47.619 14.15 0.00 34.65 3.25
200 203 1.616159 TTTTCTTGGCAGCCTACCAC 58.384 50.000 14.15 0.00 36.76 4.16
201 204 0.476338 TTTCTTGGCAGCCTACCACA 59.524 50.000 14.15 0.00 36.76 4.17
202 205 0.698238 TTCTTGGCAGCCTACCACAT 59.302 50.000 14.15 0.00 36.76 3.21
203 206 0.698238 TCTTGGCAGCCTACCACATT 59.302 50.000 14.15 0.00 36.76 2.71
204 207 1.075374 TCTTGGCAGCCTACCACATTT 59.925 47.619 14.15 0.00 36.76 2.32
205 208 1.474077 CTTGGCAGCCTACCACATTTC 59.526 52.381 14.15 0.00 36.76 2.17
206 209 0.403655 TGGCAGCCTACCACATTTCA 59.596 50.000 14.15 0.00 30.29 2.69
207 210 1.005805 TGGCAGCCTACCACATTTCAT 59.994 47.619 14.15 0.00 30.29 2.57
208 211 1.678101 GGCAGCCTACCACATTTCATC 59.322 52.381 3.29 0.00 0.00 2.92
209 212 2.648059 GCAGCCTACCACATTTCATCT 58.352 47.619 0.00 0.00 0.00 2.90
210 213 2.615912 GCAGCCTACCACATTTCATCTC 59.384 50.000 0.00 0.00 0.00 2.75
211 214 3.683847 GCAGCCTACCACATTTCATCTCT 60.684 47.826 0.00 0.00 0.00 3.10
212 215 4.443457 GCAGCCTACCACATTTCATCTCTA 60.443 45.833 0.00 0.00 0.00 2.43
213 216 5.674525 CAGCCTACCACATTTCATCTCTAA 58.325 41.667 0.00 0.00 0.00 2.10
214 217 6.294473 CAGCCTACCACATTTCATCTCTAAT 58.706 40.000 0.00 0.00 0.00 1.73
215 218 6.769822 CAGCCTACCACATTTCATCTCTAATT 59.230 38.462 0.00 0.00 0.00 1.40
216 219 7.284034 CAGCCTACCACATTTCATCTCTAATTT 59.716 37.037 0.00 0.00 0.00 1.82
217 220 8.494433 AGCCTACCACATTTCATCTCTAATTTA 58.506 33.333 0.00 0.00 0.00 1.40
218 221 9.289782 GCCTACCACATTTCATCTCTAATTTAT 57.710 33.333 0.00 0.00 0.00 1.40
222 225 9.193806 ACCACATTTCATCTCTAATTTATTGCT 57.806 29.630 0.00 0.00 0.00 3.91
223 226 9.674824 CCACATTTCATCTCTAATTTATTGCTC 57.325 33.333 0.00 0.00 0.00 4.26
224 227 9.674824 CACATTTCATCTCTAATTTATTGCTCC 57.325 33.333 0.00 0.00 0.00 4.70
225 228 9.638176 ACATTTCATCTCTAATTTATTGCTCCT 57.362 29.630 0.00 0.00 0.00 3.69
230 233 9.125026 TCATCTCTAATTTATTGCTCCTTTTCC 57.875 33.333 0.00 0.00 0.00 3.13
231 234 8.906867 CATCTCTAATTTATTGCTCCTTTTCCA 58.093 33.333 0.00 0.00 0.00 3.53
232 235 9.652114 ATCTCTAATTTATTGCTCCTTTTCCAT 57.348 29.630 0.00 0.00 0.00 3.41
233 236 9.479549 TCTCTAATTTATTGCTCCTTTTCCATT 57.520 29.630 0.00 0.00 0.00 3.16
237 240 8.667076 AATTTATTGCTCCTTTTCCATTATGC 57.333 30.769 0.00 0.00 0.00 3.14
238 241 7.422465 TTTATTGCTCCTTTTCCATTATGCT 57.578 32.000 0.00 0.00 0.00 3.79
239 242 4.989279 TTGCTCCTTTTCCATTATGCTC 57.011 40.909 0.00 0.00 0.00 4.26
240 243 4.240881 TGCTCCTTTTCCATTATGCTCT 57.759 40.909 0.00 0.00 0.00 4.09
241 244 5.372343 TGCTCCTTTTCCATTATGCTCTA 57.628 39.130 0.00 0.00 0.00 2.43
242 245 5.754782 TGCTCCTTTTCCATTATGCTCTAA 58.245 37.500 0.00 0.00 0.00 2.10
243 246 5.590259 TGCTCCTTTTCCATTATGCTCTAAC 59.410 40.000 0.00 0.00 0.00 2.34
244 247 5.277538 GCTCCTTTTCCATTATGCTCTAACG 60.278 44.000 0.00 0.00 0.00 3.18
245 248 5.741011 TCCTTTTCCATTATGCTCTAACGT 58.259 37.500 0.00 0.00 0.00 3.99
246 249 5.815740 TCCTTTTCCATTATGCTCTAACGTC 59.184 40.000 0.00 0.00 0.00 4.34
247 250 5.007724 CCTTTTCCATTATGCTCTAACGTCC 59.992 44.000 0.00 0.00 0.00 4.79
248 251 5.353394 TTTCCATTATGCTCTAACGTCCT 57.647 39.130 0.00 0.00 0.00 3.85
249 252 5.353394 TTCCATTATGCTCTAACGTCCTT 57.647 39.130 0.00 0.00 0.00 3.36
250 253 5.353394 TCCATTATGCTCTAACGTCCTTT 57.647 39.130 0.00 0.00 0.00 3.11
251 254 5.116180 TCCATTATGCTCTAACGTCCTTTG 58.884 41.667 0.00 0.00 0.00 2.77
252 255 4.260784 CCATTATGCTCTAACGTCCTTTGC 60.261 45.833 0.00 0.00 0.00 3.68
253 256 2.472695 ATGCTCTAACGTCCTTTGCA 57.527 45.000 0.00 0.00 0.00 4.08
254 257 1.508632 TGCTCTAACGTCCTTTGCAC 58.491 50.000 0.00 0.00 0.00 4.57
255 258 1.070134 TGCTCTAACGTCCTTTGCACT 59.930 47.619 0.00 0.00 0.00 4.40
256 259 1.727335 GCTCTAACGTCCTTTGCACTC 59.273 52.381 0.00 0.00 0.00 3.51
257 260 1.986378 CTCTAACGTCCTTTGCACTCG 59.014 52.381 0.00 0.00 0.00 4.18
258 261 0.438830 CTAACGTCCTTTGCACTCGC 59.561 55.000 0.00 0.00 39.24 5.03
259 262 1.279527 TAACGTCCTTTGCACTCGCG 61.280 55.000 0.00 0.00 42.97 5.87
260 263 3.777925 CGTCCTTTGCACTCGCGG 61.778 66.667 6.13 0.00 42.97 6.46
261 264 2.665185 GTCCTTTGCACTCGCGGT 60.665 61.111 6.13 0.00 42.97 5.68
286 289 5.686397 GCACCGTATCTTCTGTATTGTACTC 59.314 44.000 0.00 0.00 0.00 2.59
288 291 5.301298 ACCGTATCTTCTGTATTGTACTCCC 59.699 44.000 0.00 0.00 0.00 4.30
289 292 5.535406 CCGTATCTTCTGTATTGTACTCCCT 59.465 44.000 0.00 0.00 0.00 4.20
290 293 6.294065 CCGTATCTTCTGTATTGTACTCCCTC 60.294 46.154 0.00 0.00 0.00 4.30
291 294 6.487331 CGTATCTTCTGTATTGTACTCCCTCT 59.513 42.308 0.00 0.00 0.00 3.69
292 295 6.723298 ATCTTCTGTATTGTACTCCCTCTG 57.277 41.667 0.00 0.00 0.00 3.35
293 296 5.580998 TCTTCTGTATTGTACTCCCTCTGT 58.419 41.667 0.00 0.00 0.00 3.41
294 297 5.652891 TCTTCTGTATTGTACTCCCTCTGTC 59.347 44.000 0.00 0.00 0.00 3.51
295 298 4.279145 TCTGTATTGTACTCCCTCTGTCC 58.721 47.826 0.00 0.00 0.00 4.02
297 300 2.233305 ATTGTACTCCCTCTGTCCGT 57.767 50.000 0.00 0.00 0.00 4.69
298 301 2.885135 TTGTACTCCCTCTGTCCGTA 57.115 50.000 0.00 0.00 0.00 4.02
299 302 2.885135 TGTACTCCCTCTGTCCGTAA 57.115 50.000 0.00 0.00 0.00 3.18
300 303 3.377253 TGTACTCCCTCTGTCCGTAAT 57.623 47.619 0.00 0.00 0.00 1.89
301 304 3.705051 TGTACTCCCTCTGTCCGTAATT 58.295 45.455 0.00 0.00 0.00 1.40
302 305 4.858850 TGTACTCCCTCTGTCCGTAATTA 58.141 43.478 0.00 0.00 0.00 1.40
303 306 4.641989 TGTACTCCCTCTGTCCGTAATTAC 59.358 45.833 5.47 5.47 0.00 1.89
306 309 4.159879 ACTCCCTCTGTCCGTAATTACTTG 59.840 45.833 13.56 5.06 0.00 3.16
308 311 4.159135 TCCCTCTGTCCGTAATTACTTGTC 59.841 45.833 13.56 3.79 0.00 3.18
309 312 4.103357 CCTCTGTCCGTAATTACTTGTCG 58.897 47.826 13.56 0.06 0.00 4.35
310 313 4.380233 CCTCTGTCCGTAATTACTTGTCGT 60.380 45.833 13.56 0.00 0.00 4.34
311 314 5.163723 CCTCTGTCCGTAATTACTTGTCGTA 60.164 44.000 13.56 0.00 0.00 3.43
312 315 6.252967 TCTGTCCGTAATTACTTGTCGTAA 57.747 37.500 13.56 0.00 41.97 3.18
313 316 6.676950 TCTGTCCGTAATTACTTGTCGTAAA 58.323 36.000 13.56 0.00 41.17 2.01
314 317 7.144661 TCTGTCCGTAATTACTTGTCGTAAAA 58.855 34.615 13.56 0.00 41.17 1.52
315 318 7.651304 TCTGTCCGTAATTACTTGTCGTAAAAA 59.349 33.333 13.56 0.00 41.17 1.94
316 319 8.309163 TGTCCGTAATTACTTGTCGTAAAAAT 57.691 30.769 13.56 0.00 41.17 1.82
317 320 8.222433 TGTCCGTAATTACTTGTCGTAAAAATG 58.778 33.333 13.56 0.00 41.17 2.32
318 321 8.223100 GTCCGTAATTACTTGTCGTAAAAATGT 58.777 33.333 13.56 0.00 41.17 2.71
319 322 9.416794 TCCGTAATTACTTGTCGTAAAAATGTA 57.583 29.630 13.56 0.00 41.17 2.29
353 356 8.923683 AGACGTATTTTAAGTTTTAGCTGAGAC 58.076 33.333 0.00 0.00 0.00 3.36
354 357 8.597662 ACGTATTTTAAGTTTTAGCTGAGACA 57.402 30.769 0.00 0.00 0.00 3.41
355 358 9.048446 ACGTATTTTAAGTTTTAGCTGAGACAA 57.952 29.630 0.00 0.00 0.00 3.18
356 359 9.530129 CGTATTTTAAGTTTTAGCTGAGACAAG 57.470 33.333 0.00 0.00 0.00 3.16
363 366 7.674471 AGTTTTAGCTGAGACAAGTAATTCC 57.326 36.000 0.00 0.00 0.00 3.01
364 367 6.369065 AGTTTTAGCTGAGACAAGTAATTCCG 59.631 38.462 0.00 0.00 0.00 4.30
365 368 5.654603 TTAGCTGAGACAAGTAATTCCGA 57.345 39.130 0.00 0.00 0.00 4.55
366 369 4.537135 AGCTGAGACAAGTAATTCCGAA 57.463 40.909 0.00 0.00 0.00 4.30
367 370 4.246458 AGCTGAGACAAGTAATTCCGAAC 58.754 43.478 0.00 0.00 0.00 3.95
368 371 3.060895 GCTGAGACAAGTAATTCCGAACG 59.939 47.826 0.00 0.00 0.00 3.95
369 372 3.581755 TGAGACAAGTAATTCCGAACGG 58.418 45.455 6.94 6.94 0.00 4.44
370 373 3.256383 TGAGACAAGTAATTCCGAACGGA 59.744 43.478 12.04 12.04 43.52 4.69
371 374 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
372 375 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
373 376 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
374 377 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
375 378 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
376 379 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
377 380 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
378 381 2.083628 ATTCCGAACGGAGGGAGTAT 57.916 50.000 15.34 3.38 46.06 2.12
379 382 2.734755 TTCCGAACGGAGGGAGTATA 57.265 50.000 15.34 0.00 46.06 1.47
380 383 2.965671 TCCGAACGGAGGGAGTATAT 57.034 50.000 12.04 0.00 39.76 0.86
381 384 2.511659 TCCGAACGGAGGGAGTATATG 58.488 52.381 12.04 0.00 39.76 1.78
382 385 2.107031 TCCGAACGGAGGGAGTATATGA 59.893 50.000 12.04 0.00 39.76 2.15
383 386 3.090037 CCGAACGGAGGGAGTATATGAT 58.910 50.000 7.53 0.00 37.50 2.45
384 387 4.019051 TCCGAACGGAGGGAGTATATGATA 60.019 45.833 12.04 0.00 39.76 2.15
385 388 4.888239 CCGAACGGAGGGAGTATATGATAT 59.112 45.833 7.53 0.00 37.50 1.63
386 389 5.221067 CCGAACGGAGGGAGTATATGATATG 60.221 48.000 7.53 0.00 37.50 1.78
387 390 5.589050 CGAACGGAGGGAGTATATGATATGA 59.411 44.000 0.00 0.00 0.00 2.15
388 391 6.095021 CGAACGGAGGGAGTATATGATATGAA 59.905 42.308 0.00 0.00 0.00 2.57
389 392 7.201830 CGAACGGAGGGAGTATATGATATGAAT 60.202 40.741 0.00 0.00 0.00 2.57
390 393 7.353414 ACGGAGGGAGTATATGATATGAATG 57.647 40.000 0.00 0.00 0.00 2.67
391 394 7.126061 ACGGAGGGAGTATATGATATGAATGA 58.874 38.462 0.00 0.00 0.00 2.57
392 395 7.619698 ACGGAGGGAGTATATGATATGAATGAA 59.380 37.037 0.00 0.00 0.00 2.57
393 396 8.646004 CGGAGGGAGTATATGATATGAATGAAT 58.354 37.037 0.00 0.00 0.00 2.57
394 397 9.775854 GGAGGGAGTATATGATATGAATGAATG 57.224 37.037 0.00 0.00 0.00 2.67
452 455 9.388506 ACATTTTTCCATGTAACATTTTTGTGA 57.611 25.926 0.00 0.00 35.51 3.58
453 456 9.649024 CATTTTTCCATGTAACATTTTTGTGAC 57.351 29.630 0.00 0.00 0.00 3.67
454 457 8.777865 TTTTTCCATGTAACATTTTTGTGACA 57.222 26.923 0.00 0.00 37.54 3.58
455 458 8.777865 TTTTCCATGTAACATTTTTGTGACAA 57.222 26.923 0.00 0.00 36.79 3.18
456 459 8.417780 TTTCCATGTAACATTTTTGTGACAAG 57.582 30.769 0.00 0.00 36.79 3.16
457 460 7.106439 TCCATGTAACATTTTTGTGACAAGT 57.894 32.000 0.00 0.00 36.79 3.16
458 461 8.226819 TCCATGTAACATTTTTGTGACAAGTA 57.773 30.769 0.00 0.00 36.79 2.24
459 462 8.349245 TCCATGTAACATTTTTGTGACAAGTAG 58.651 33.333 0.00 0.00 36.79 2.57
460 463 8.134895 CCATGTAACATTTTTGTGACAAGTAGT 58.865 33.333 0.00 0.00 36.79 2.73
461 464 9.515020 CATGTAACATTTTTGTGACAAGTAGTT 57.485 29.630 0.00 5.60 36.79 2.24
462 465 9.730420 ATGTAACATTTTTGTGACAAGTAGTTC 57.270 29.630 0.00 0.00 36.79 3.01
463 466 8.731605 TGTAACATTTTTGTGACAAGTAGTTCA 58.268 29.630 0.00 2.09 30.65 3.18
464 467 9.221775 GTAACATTTTTGTGACAAGTAGTTCAG 57.778 33.333 0.00 0.00 0.00 3.02
465 468 6.795399 ACATTTTTGTGACAAGTAGTTCAGG 58.205 36.000 0.00 0.00 0.00 3.86
466 469 6.601613 ACATTTTTGTGACAAGTAGTTCAGGA 59.398 34.615 0.00 0.00 0.00 3.86
467 470 6.431198 TTTTTGTGACAAGTAGTTCAGGAC 57.569 37.500 0.00 0.00 0.00 3.85
468 471 3.364889 TGTGACAAGTAGTTCAGGACG 57.635 47.619 0.00 0.00 0.00 4.79
469 472 2.035449 TGTGACAAGTAGTTCAGGACGG 59.965 50.000 0.00 0.00 0.00 4.79
470 473 2.295349 GTGACAAGTAGTTCAGGACGGA 59.705 50.000 0.00 0.00 0.00 4.69
471 474 2.557056 TGACAAGTAGTTCAGGACGGAG 59.443 50.000 0.00 0.00 0.00 4.63
472 475 1.893801 ACAAGTAGTTCAGGACGGAGG 59.106 52.381 0.00 0.00 0.00 4.30
473 476 2.168496 CAAGTAGTTCAGGACGGAGGA 58.832 52.381 0.00 0.00 0.00 3.71
474 477 2.561419 CAAGTAGTTCAGGACGGAGGAA 59.439 50.000 0.00 0.00 0.00 3.36
475 478 2.885616 AGTAGTTCAGGACGGAGGAAA 58.114 47.619 0.00 0.00 0.00 3.13
476 479 3.236896 AGTAGTTCAGGACGGAGGAAAA 58.763 45.455 0.00 0.00 0.00 2.29
477 480 3.838903 AGTAGTTCAGGACGGAGGAAAAT 59.161 43.478 0.00 0.00 0.00 1.82
478 481 5.021458 AGTAGTTCAGGACGGAGGAAAATA 58.979 41.667 0.00 0.00 0.00 1.40
479 482 5.661759 AGTAGTTCAGGACGGAGGAAAATAT 59.338 40.000 0.00 0.00 0.00 1.28
480 483 5.024785 AGTTCAGGACGGAGGAAAATATC 57.975 43.478 0.00 0.00 0.00 1.63
481 484 4.717280 AGTTCAGGACGGAGGAAAATATCT 59.283 41.667 0.00 0.00 0.00 1.98
482 485 5.897824 AGTTCAGGACGGAGGAAAATATCTA 59.102 40.000 0.00 0.00 0.00 1.98
483 486 5.786264 TCAGGACGGAGGAAAATATCTAC 57.214 43.478 0.00 0.00 0.00 2.59
484 487 4.277672 TCAGGACGGAGGAAAATATCTACG 59.722 45.833 0.00 0.00 0.00 3.51
485 488 4.277672 CAGGACGGAGGAAAATATCTACGA 59.722 45.833 1.77 0.00 0.00 3.43
486 489 4.891756 AGGACGGAGGAAAATATCTACGAA 59.108 41.667 1.77 0.00 0.00 3.85
487 490 5.539193 AGGACGGAGGAAAATATCTACGAAT 59.461 40.000 1.77 0.00 0.00 3.34
488 491 6.041751 AGGACGGAGGAAAATATCTACGAATT 59.958 38.462 1.77 0.00 0.00 2.17
489 492 7.232127 AGGACGGAGGAAAATATCTACGAATTA 59.768 37.037 1.77 0.00 0.00 1.40
490 493 7.869429 GGACGGAGGAAAATATCTACGAATTAA 59.131 37.037 1.77 0.00 0.00 1.40
491 494 8.813643 ACGGAGGAAAATATCTACGAATTAAG 57.186 34.615 1.77 0.00 0.00 1.85
492 495 8.636213 ACGGAGGAAAATATCTACGAATTAAGA 58.364 33.333 1.77 0.00 0.00 2.10
493 496 9.472361 CGGAGGAAAATATCTACGAATTAAGAA 57.528 33.333 0.00 0.00 0.00 2.52
512 515 6.664428 AAGAAACTGATCTAGATAGAGGCC 57.336 41.667 4.89 0.00 35.50 5.19
513 516 5.710646 AGAAACTGATCTAGATAGAGGCCA 58.289 41.667 5.01 0.00 35.50 5.36
514 517 6.139671 AGAAACTGATCTAGATAGAGGCCAA 58.860 40.000 5.01 0.00 35.50 4.52
515 518 6.613271 AGAAACTGATCTAGATAGAGGCCAAA 59.387 38.462 5.01 0.00 35.50 3.28
516 519 5.799827 ACTGATCTAGATAGAGGCCAAAC 57.200 43.478 5.01 0.00 35.50 2.93
517 520 4.279671 ACTGATCTAGATAGAGGCCAAACG 59.720 45.833 5.01 0.00 35.50 3.60
518 521 3.574396 TGATCTAGATAGAGGCCAAACGG 59.426 47.826 5.01 0.00 35.50 4.44
519 522 3.028094 TCTAGATAGAGGCCAAACGGT 57.972 47.619 5.01 0.00 0.00 4.83
520 523 3.371965 TCTAGATAGAGGCCAAACGGTT 58.628 45.455 5.01 0.00 0.00 4.44
521 524 2.403252 AGATAGAGGCCAAACGGTTG 57.597 50.000 6.11 6.11 34.25 3.77
522 525 1.628846 AGATAGAGGCCAAACGGTTGT 59.371 47.619 13.07 0.00 32.40 3.32
523 526 1.737793 GATAGAGGCCAAACGGTTGTG 59.262 52.381 13.07 4.87 32.40 3.33
524 527 0.250553 TAGAGGCCAAACGGTTGTGG 60.251 55.000 13.07 14.05 38.00 4.17
525 528 1.527380 GAGGCCAAACGGTTGTGGA 60.527 57.895 13.07 0.00 37.03 4.02
526 529 1.515521 GAGGCCAAACGGTTGTGGAG 61.516 60.000 13.07 0.00 37.03 3.86
528 531 1.388837 GGCCAAACGGTTGTGGAGTT 61.389 55.000 13.07 0.00 37.03 3.01
532 535 1.388837 AAACGGTTGTGGAGTTGGCC 61.389 55.000 0.00 0.00 0.00 5.36
536 539 0.318120 GGTTGTGGAGTTGGCCATTG 59.682 55.000 6.09 0.00 40.68 2.82
537 540 0.318120 GTTGTGGAGTTGGCCATTGG 59.682 55.000 6.09 0.00 40.68 3.16
566 569 2.024080 TCCCCTCTGCAATTTGGCTTAT 60.024 45.455 0.00 0.00 34.04 1.73
570 573 4.202090 CCCTCTGCAATTTGGCTTATTCTC 60.202 45.833 0.00 0.00 34.04 2.87
571 574 4.400251 CCTCTGCAATTTGGCTTATTCTCA 59.600 41.667 0.00 0.00 34.04 3.27
575 578 6.094048 TCTGCAATTTGGCTTATTCTCAGTAC 59.906 38.462 0.00 0.00 34.04 2.73
577 580 7.109501 TGCAATTTGGCTTATTCTCAGTACTA 58.890 34.615 0.00 0.00 34.04 1.82
578 581 7.280876 TGCAATTTGGCTTATTCTCAGTACTAG 59.719 37.037 0.00 0.00 34.04 2.57
585 588 9.197306 TGGCTTATTCTCAGTACTAGTATCAAA 57.803 33.333 5.75 0.00 0.00 2.69
586 589 9.685828 GGCTTATTCTCAGTACTAGTATCAAAG 57.314 37.037 5.75 2.54 0.00 2.77
587 590 9.685828 GCTTATTCTCAGTACTAGTATCAAAGG 57.314 37.037 5.75 0.00 0.00 3.11
588 591 9.685828 CTTATTCTCAGTACTAGTATCAAAGGC 57.314 37.037 5.75 0.00 0.00 4.35
594 601 8.718102 TCAGTACTAGTATCAAAGGCAAAATC 57.282 34.615 5.75 0.00 0.00 2.17
603 610 3.118482 TCAAAGGCAAAATCCTGCACAAA 60.118 39.130 0.00 0.00 44.52 2.83
607 614 4.463070 AGGCAAAATCCTGCACAAATTTT 58.537 34.783 0.00 4.05 44.52 1.82
620 630 4.217550 GCACAAATTTTCTACTGGCCTACA 59.782 41.667 3.32 0.00 0.00 2.74
630 640 2.545969 TGGCCTACAGACCACCAAA 58.454 52.632 3.32 0.00 0.00 3.28
631 641 0.109723 TGGCCTACAGACCACCAAAC 59.890 55.000 3.32 0.00 0.00 2.93
633 643 1.271926 GGCCTACAGACCACCAAACAT 60.272 52.381 0.00 0.00 0.00 2.71
634 644 2.026636 GGCCTACAGACCACCAAACATA 60.027 50.000 0.00 0.00 0.00 2.29
635 645 3.371595 GGCCTACAGACCACCAAACATAT 60.372 47.826 0.00 0.00 0.00 1.78
637 647 5.057149 GCCTACAGACCACCAAACATATAG 58.943 45.833 0.00 0.00 0.00 1.31
638 648 5.396436 GCCTACAGACCACCAAACATATAGT 60.396 44.000 0.00 0.00 0.00 2.12
639 649 6.183360 GCCTACAGACCACCAAACATATAGTA 60.183 42.308 0.00 0.00 0.00 1.82
640 650 7.208080 CCTACAGACCACCAAACATATAGTAC 58.792 42.308 0.00 0.00 0.00 2.73
641 651 5.657474 ACAGACCACCAAACATATAGTACG 58.343 41.667 0.00 0.00 0.00 3.67
642 652 5.186409 ACAGACCACCAAACATATAGTACGT 59.814 40.000 0.00 0.00 0.00 3.57
644 654 5.419788 AGACCACCAAACATATAGTACGTGA 59.580 40.000 0.00 0.00 0.00 4.35
645 655 6.097839 AGACCACCAAACATATAGTACGTGAT 59.902 38.462 0.00 0.00 0.00 3.06
646 656 6.046593 ACCACCAAACATATAGTACGTGATG 58.953 40.000 0.00 0.00 0.00 3.07
647 657 5.050363 CCACCAAACATATAGTACGTGATGC 60.050 44.000 0.00 0.00 0.00 3.91
649 659 4.149922 CCAAACATATAGTACGTGATGCCG 59.850 45.833 0.00 0.00 0.00 5.69
650 660 2.942710 ACATATAGTACGTGATGCCGC 58.057 47.619 0.00 0.00 0.00 6.53
651 661 2.295070 ACATATAGTACGTGATGCCGCA 59.705 45.455 0.00 0.00 0.00 5.69
652 662 2.699251 TATAGTACGTGATGCCGCAG 57.301 50.000 0.00 0.00 0.00 5.18
653 663 0.597637 ATAGTACGTGATGCCGCAGC 60.598 55.000 0.46 0.46 40.48 5.25
654 664 1.663379 TAGTACGTGATGCCGCAGCT 61.663 55.000 10.45 0.00 40.80 4.24
655 665 2.509111 TACGTGATGCCGCAGCTG 60.509 61.111 10.11 10.11 40.80 4.24
656 666 3.000693 TACGTGATGCCGCAGCTGA 62.001 57.895 20.43 0.00 40.80 4.26
657 667 3.857854 CGTGATGCCGCAGCTGAC 61.858 66.667 20.43 8.06 40.80 3.51
658 668 2.435586 GTGATGCCGCAGCTGACT 60.436 61.111 20.43 0.00 40.80 3.41
660 670 3.260483 GATGCCGCAGCTGACTCG 61.260 66.667 20.43 11.79 40.80 4.18
661 671 3.706563 GATGCCGCAGCTGACTCGA 62.707 63.158 20.43 0.00 40.80 4.04
662 672 3.300934 ATGCCGCAGCTGACTCGAA 62.301 57.895 20.43 4.07 40.80 3.71
663 673 3.184683 GCCGCAGCTGACTCGAAG 61.185 66.667 20.43 1.04 35.50 3.79
664 674 2.259818 CCGCAGCTGACTCGAAGT 59.740 61.111 20.43 0.00 0.00 3.01
665 675 1.803519 CCGCAGCTGACTCGAAGTC 60.804 63.158 20.43 7.74 45.26 3.01
668 678 0.242286 GCAGCTGACTCGAAGTCTCA 59.758 55.000 20.43 0.64 45.27 3.27
669 679 1.336332 GCAGCTGACTCGAAGTCTCAA 60.336 52.381 20.43 0.00 45.27 3.02
670 680 2.673610 GCAGCTGACTCGAAGTCTCAAT 60.674 50.000 20.43 0.00 45.27 2.57
671 681 2.922387 CAGCTGACTCGAAGTCTCAATG 59.078 50.000 8.42 6.30 45.27 2.82
672 682 2.094286 AGCTGACTCGAAGTCTCAATGG 60.094 50.000 13.65 0.00 45.27 3.16
674 684 3.615110 GCTGACTCGAAGTCTCAATGGAA 60.615 47.826 13.65 0.00 45.27 3.53
678 688 5.997746 TGACTCGAAGTCTCAATGGAAAAAT 59.002 36.000 13.65 0.00 45.27 1.82
679 689 6.073058 TGACTCGAAGTCTCAATGGAAAAATG 60.073 38.462 13.65 0.00 45.27 2.32
680 690 5.182001 ACTCGAAGTCTCAATGGAAAAATGG 59.818 40.000 0.00 0.00 0.00 3.16
683 693 5.048782 CGAAGTCTCAATGGAAAAATGGTGA 60.049 40.000 0.00 0.00 0.00 4.02
684 694 6.349611 CGAAGTCTCAATGGAAAAATGGTGAT 60.350 38.462 0.00 0.00 0.00 3.06
685 695 6.521151 AGTCTCAATGGAAAAATGGTGATC 57.479 37.500 0.00 0.00 0.00 2.92
686 696 5.420104 AGTCTCAATGGAAAAATGGTGATCC 59.580 40.000 0.00 0.00 0.00 3.36
700 710 1.927174 GTGATCCAATCTTGACGTCCG 59.073 52.381 14.12 4.24 0.00 4.79
701 711 1.822371 TGATCCAATCTTGACGTCCGA 59.178 47.619 14.12 10.09 0.00 4.55
719 729 2.128128 CGCAAGTCGCAACGTGTC 60.128 61.111 0.00 0.00 42.60 3.67
720 730 2.585869 CGCAAGTCGCAACGTGTCT 61.586 57.895 0.00 0.00 42.60 3.41
721 731 1.201825 GCAAGTCGCAACGTGTCTC 59.798 57.895 0.00 0.00 41.79 3.36
722 732 1.482955 CAAGTCGCAACGTGTCTCG 59.517 57.895 0.00 0.00 46.00 4.04
723 733 0.933047 CAAGTCGCAACGTGTCTCGA 60.933 55.000 0.56 0.00 42.86 4.04
725 735 0.248743 AGTCGCAACGTGTCTCGAAA 60.249 50.000 0.56 0.00 42.86 3.46
726 736 0.111835 GTCGCAACGTGTCTCGAAAC 60.112 55.000 0.56 0.00 42.86 2.78
727 737 0.248743 TCGCAACGTGTCTCGAAACT 60.249 50.000 0.56 0.00 42.86 2.66
728 738 1.002576 TCGCAACGTGTCTCGAAACTA 60.003 47.619 0.56 0.00 42.86 2.24
729 739 1.382419 CGCAACGTGTCTCGAAACTAG 59.618 52.381 0.56 0.00 42.86 2.57
731 741 2.404361 GCAACGTGTCTCGAAACTAGTC 59.596 50.000 0.00 0.00 42.86 2.59
733 743 1.869767 ACGTGTCTCGAAACTAGTCGT 59.130 47.619 0.00 0.00 41.80 4.34
734 744 2.289002 ACGTGTCTCGAAACTAGTCGTT 59.711 45.455 0.00 0.00 41.80 3.85
735 745 3.494626 ACGTGTCTCGAAACTAGTCGTTA 59.505 43.478 0.00 0.00 41.80 3.18
736 746 4.080393 CGTGTCTCGAAACTAGTCGTTAG 58.920 47.826 0.00 0.00 41.80 2.34
737 747 4.143242 CGTGTCTCGAAACTAGTCGTTAGA 60.143 45.833 0.00 0.00 41.80 2.10
750 760 3.294214 GTCGTTAGACCTCCCCTAATCA 58.706 50.000 0.00 0.00 41.41 2.57
751 761 3.067883 GTCGTTAGACCTCCCCTAATCAC 59.932 52.174 0.00 0.00 41.41 3.06
752 762 3.053095 TCGTTAGACCTCCCCTAATCACT 60.053 47.826 0.00 0.00 0.00 3.41
753 763 4.166725 TCGTTAGACCTCCCCTAATCACTA 59.833 45.833 0.00 0.00 0.00 2.74
756 766 6.294620 CGTTAGACCTCCCCTAATCACTATTC 60.295 46.154 0.00 0.00 0.00 1.75
760 770 7.371043 AGACCTCCCCTAATCACTATTCTTTA 58.629 38.462 0.00 0.00 0.00 1.85
761 771 7.511028 AGACCTCCCCTAATCACTATTCTTTAG 59.489 40.741 0.00 0.00 0.00 1.85
764 774 8.317679 CCTCCCCTAATCACTATTCTTTAGATG 58.682 40.741 0.00 0.00 0.00 2.90
773 783 9.995003 ATCACTATTCTTTAGATGAGATCCAAC 57.005 33.333 0.00 0.00 0.00 3.77
784 794 5.884792 AGATGAGATCCAACCTTGATGTTTC 59.115 40.000 0.00 0.00 0.00 2.78
895 967 0.826256 TGTACGCGGATAGCCTGGAT 60.826 55.000 12.47 0.00 44.76 3.41
903 975 1.560860 GATAGCCTGGATTCACGCGC 61.561 60.000 5.73 0.00 31.66 6.86
908 980 3.367051 CTGGATTCACGCGCCGTTG 62.367 63.158 5.73 0.00 38.32 4.10
909 981 3.115892 GGATTCACGCGCCGTTGA 61.116 61.111 5.73 0.00 38.32 3.18
910 982 2.461110 GGATTCACGCGCCGTTGAT 61.461 57.895 5.73 0.00 38.32 2.57
911 983 1.296867 GATTCACGCGCCGTTGATG 60.297 57.895 5.73 0.00 38.32 3.07
912 984 1.692148 GATTCACGCGCCGTTGATGA 61.692 55.000 5.73 0.00 38.32 2.92
913 985 1.966493 ATTCACGCGCCGTTGATGAC 61.966 55.000 5.73 0.00 38.32 3.06
914 986 3.112075 CACGCGCCGTTGATGACT 61.112 61.111 5.73 0.00 38.32 3.41
915 987 2.357034 ACGCGCCGTTGATGACTT 60.357 55.556 5.73 0.00 36.35 3.01
916 988 2.380410 ACGCGCCGTTGATGACTTC 61.380 57.895 5.73 0.00 36.35 3.01
950 1022 1.143305 CAGCCTGAGACTTGAACGTG 58.857 55.000 0.00 0.00 0.00 4.49
987 1085 4.564821 GCCTCCGGCTATGATAAATACCAA 60.565 45.833 0.00 0.00 46.69 3.67
1043 1141 3.603532 TCAAGCACATCTTCTAGCCTTG 58.396 45.455 0.00 0.00 31.27 3.61
1061 1160 2.347697 TGTACACACAGAGCTAAGCG 57.652 50.000 0.00 0.00 0.00 4.68
1085 1185 1.865970 GCTTGCTTCATCTCATCTCGG 59.134 52.381 0.00 0.00 0.00 4.63
1093 1195 0.541764 ATCTCATCTCGGCCTCTCCC 60.542 60.000 0.00 0.00 0.00 4.30
1157 1259 1.524621 CGCAATCATCGCCCTCCTT 60.525 57.895 0.00 0.00 0.00 3.36
1340 1454 3.062466 CCGACTGACGCTCCCTCA 61.062 66.667 0.00 0.00 41.07 3.86
1505 7299 1.704070 GACTCTGCTTCGTCTTGTCC 58.296 55.000 0.00 0.00 0.00 4.02
1509 7369 3.119316 ACTCTGCTTCGTCTTGTCCATAG 60.119 47.826 0.00 0.00 0.00 2.23
1549 7411 5.163488 TGCGGATTCTTTATTAGAGACCGAA 60.163 40.000 14.01 4.41 46.49 4.30
1552 7414 6.366332 CGGATTCTTTATTAGAGACCGAATGG 59.634 42.308 7.22 0.00 46.49 3.16
1570 7434 3.610040 TGGAGATTACACGACATTGCT 57.390 42.857 0.00 0.00 0.00 3.91
1685 7555 7.497579 TGTGTGTCTGTTTTTCTCAGCTTATTA 59.502 33.333 0.00 0.00 33.48 0.98
1754 7624 0.885879 TCGACGGCTGTAGAACACAT 59.114 50.000 5.96 0.00 36.29 3.21
1781 7651 7.123847 AGGAGACTCGCCTTTCTTAAATTAGTA 59.876 37.037 0.00 0.00 32.90 1.82
1782 7652 7.927092 GGAGACTCGCCTTTCTTAAATTAGTAT 59.073 37.037 0.00 0.00 0.00 2.12
1810 7680 1.678970 ATTGCCCTCCTTCGTTGGC 60.679 57.895 0.00 0.00 44.27 4.52
1835 7705 1.463674 CAAATTCACCCTCTTCCCCG 58.536 55.000 0.00 0.00 0.00 5.73
1965 7846 0.324738 AGAGGACTGCATCGAGGGAA 60.325 55.000 0.00 0.00 0.00 3.97
1988 7869 1.956869 TCTTGGAGAGGGCATGAGAA 58.043 50.000 0.00 0.00 0.00 2.87
2012 7963 1.103803 TAGAGTGGGTCGATGACAGC 58.896 55.000 0.00 0.00 33.68 4.40
2021 7972 1.737735 CGATGACAGCCACGCTCAA 60.738 57.895 0.00 0.00 36.40 3.02
2022 7973 1.291184 CGATGACAGCCACGCTCAAA 61.291 55.000 0.00 0.00 36.40 2.69
2024 8414 1.266718 GATGACAGCCACGCTCAAAAA 59.733 47.619 0.00 0.00 36.40 1.94
2049 8439 7.895759 AGAGAGGACATGAGAATAATTAGAGC 58.104 38.462 0.00 0.00 0.00 4.09
2051 8441 5.788450 AGGACATGAGAATAATTAGAGCGG 58.212 41.667 0.00 0.00 0.00 5.52
2052 8442 5.540337 AGGACATGAGAATAATTAGAGCGGA 59.460 40.000 0.00 0.00 0.00 5.54
2053 8443 5.635700 GGACATGAGAATAATTAGAGCGGAC 59.364 44.000 0.00 0.00 0.00 4.79
2055 8445 6.821388 ACATGAGAATAATTAGAGCGGACTT 58.179 36.000 0.00 0.00 0.00 3.01
2056 8446 7.952671 ACATGAGAATAATTAGAGCGGACTTA 58.047 34.615 0.00 0.00 0.00 2.24
2057 8447 8.421784 ACATGAGAATAATTAGAGCGGACTTAA 58.578 33.333 0.00 0.00 0.00 1.85
2058 8448 9.429359 CATGAGAATAATTAGAGCGGACTTAAT 57.571 33.333 0.00 0.00 0.00 1.40
2067 8457 8.819643 ATTAGAGCGGACTTAATTATTCTCAC 57.180 34.615 0.00 0.00 0.00 3.51
2068 8458 5.602628 AGAGCGGACTTAATTATTCTCACC 58.397 41.667 0.00 0.00 0.00 4.02
2070 8460 4.710528 CGGACTTAATTATTCTCACCGC 57.289 45.455 0.00 0.00 0.00 5.68
2072 8462 4.444720 CGGACTTAATTATTCTCACCGCTC 59.555 45.833 0.00 0.00 0.00 5.03
2073 8463 5.602628 GGACTTAATTATTCTCACCGCTCT 58.397 41.667 0.00 0.00 0.00 4.09
2074 8464 6.049790 GGACTTAATTATTCTCACCGCTCTT 58.950 40.000 0.00 0.00 0.00 2.85
2190 8847 6.954944 TCAGAAAAATTAGAAGTGAACACGG 58.045 36.000 0.00 0.00 36.20 4.94
2559 9225 1.594862 GCATTACAGCTGATGGTCGAC 59.405 52.381 23.35 7.13 0.00 4.20
2578 9244 4.211794 TCGACCACGAACTTGGAAATAAAC 59.788 41.667 4.40 0.00 45.74 2.01
2581 9247 4.215965 CCACGAACTTGGAAATAAACACG 58.784 43.478 0.00 0.00 39.24 4.49
2623 9289 2.076207 TATGCGTACCTGGGAGCTTA 57.924 50.000 0.00 0.64 0.00 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 38 1.915489 AGGACCCATACAGACATGCAA 59.085 47.619 0.00 0.00 0.00 4.08
37 39 1.210234 CAGGACCCATACAGACATGCA 59.790 52.381 0.00 0.00 0.00 3.96
41 43 0.904649 CTGCAGGACCCATACAGACA 59.095 55.000 5.57 0.00 0.00 3.41
42 44 1.137872 CTCTGCAGGACCCATACAGAC 59.862 57.143 15.13 0.00 33.95 3.51
44 46 0.467384 CCTCTGCAGGACCCATACAG 59.533 60.000 15.13 0.00 43.65 2.74
60 62 2.999355 GCTCTCACATGACTTGTTCCTC 59.001 50.000 0.00 0.00 36.00 3.71
61 63 2.611473 CGCTCTCACATGACTTGTTCCT 60.611 50.000 0.00 0.00 36.00 3.36
136 139 8.802267 CCCTTATTTTGACCTTTTTGACATAGA 58.198 33.333 0.00 0.00 0.00 1.98
137 140 8.585018 ACCCTTATTTTGACCTTTTTGACATAG 58.415 33.333 0.00 0.00 0.00 2.23
138 141 8.485578 ACCCTTATTTTGACCTTTTTGACATA 57.514 30.769 0.00 0.00 0.00 2.29
139 142 7.373617 ACCCTTATTTTGACCTTTTTGACAT 57.626 32.000 0.00 0.00 0.00 3.06
140 143 6.800072 ACCCTTATTTTGACCTTTTTGACA 57.200 33.333 0.00 0.00 0.00 3.58
142 145 8.770010 TTCTACCCTTATTTTGACCTTTTTGA 57.230 30.769 0.00 0.00 0.00 2.69
143 146 9.256477 GTTTCTACCCTTATTTTGACCTTTTTG 57.744 33.333 0.00 0.00 0.00 2.44
144 147 9.209048 AGTTTCTACCCTTATTTTGACCTTTTT 57.791 29.630 0.00 0.00 0.00 1.94
145 148 8.777578 AGTTTCTACCCTTATTTTGACCTTTT 57.222 30.769 0.00 0.00 0.00 2.27
146 149 9.516546 CTAGTTTCTACCCTTATTTTGACCTTT 57.483 33.333 0.00 0.00 0.00 3.11
147 150 8.887393 TCTAGTTTCTACCCTTATTTTGACCTT 58.113 33.333 0.00 0.00 0.00 3.50
148 151 8.445361 TCTAGTTTCTACCCTTATTTTGACCT 57.555 34.615 0.00 0.00 0.00 3.85
158 161 9.642343 AAAAAGTGAATTCTAGTTTCTACCCTT 57.358 29.630 7.05 0.00 0.00 3.95
159 162 9.286170 GAAAAAGTGAATTCTAGTTTCTACCCT 57.714 33.333 7.05 0.00 0.00 4.34
160 163 9.286170 AGAAAAAGTGAATTCTAGTTTCTACCC 57.714 33.333 17.63 6.37 34.24 3.69
164 167 8.138074 GCCAAGAAAAAGTGAATTCTAGTTTCT 58.862 33.333 7.05 12.41 34.90 2.52
165 168 7.920682 TGCCAAGAAAAAGTGAATTCTAGTTTC 59.079 33.333 7.05 10.61 34.90 2.78
166 169 7.781056 TGCCAAGAAAAAGTGAATTCTAGTTT 58.219 30.769 7.05 6.04 34.90 2.66
167 170 7.346751 TGCCAAGAAAAAGTGAATTCTAGTT 57.653 32.000 7.05 0.10 34.90 2.24
168 171 6.515696 GCTGCCAAGAAAAAGTGAATTCTAGT 60.516 38.462 7.05 0.00 34.90 2.57
169 172 5.860716 GCTGCCAAGAAAAAGTGAATTCTAG 59.139 40.000 7.05 0.00 34.90 2.43
170 173 5.278957 GGCTGCCAAGAAAAAGTGAATTCTA 60.279 40.000 15.17 0.00 34.90 2.10
171 174 4.502087 GGCTGCCAAGAAAAAGTGAATTCT 60.502 41.667 15.17 0.00 37.49 2.40
172 175 3.742882 GGCTGCCAAGAAAAAGTGAATTC 59.257 43.478 15.17 0.00 0.00 2.17
173 176 3.389002 AGGCTGCCAAGAAAAAGTGAATT 59.611 39.130 22.65 0.00 0.00 2.17
174 177 2.967887 AGGCTGCCAAGAAAAAGTGAAT 59.032 40.909 22.65 0.00 0.00 2.57
175 178 2.387757 AGGCTGCCAAGAAAAAGTGAA 58.612 42.857 22.65 0.00 0.00 3.18
176 179 2.071778 AGGCTGCCAAGAAAAAGTGA 57.928 45.000 22.65 0.00 0.00 3.41
177 180 2.029918 GGTAGGCTGCCAAGAAAAAGTG 60.030 50.000 22.65 0.00 0.00 3.16
178 181 2.239400 GGTAGGCTGCCAAGAAAAAGT 58.761 47.619 22.65 0.00 0.00 2.66
179 182 2.029918 GTGGTAGGCTGCCAAGAAAAAG 60.030 50.000 26.43 0.00 37.81 2.27
180 183 1.960689 GTGGTAGGCTGCCAAGAAAAA 59.039 47.619 26.43 0.00 37.81 1.94
181 184 1.133637 TGTGGTAGGCTGCCAAGAAAA 60.134 47.619 26.43 6.98 37.81 2.29
182 185 0.476338 TGTGGTAGGCTGCCAAGAAA 59.524 50.000 26.43 9.49 37.81 2.52
183 186 0.698238 ATGTGGTAGGCTGCCAAGAA 59.302 50.000 26.43 14.89 37.81 2.52
184 187 0.698238 AATGTGGTAGGCTGCCAAGA 59.302 50.000 26.43 15.86 37.81 3.02
185 188 1.474077 GAAATGTGGTAGGCTGCCAAG 59.526 52.381 26.43 0.00 37.81 3.61
186 189 1.202989 TGAAATGTGGTAGGCTGCCAA 60.203 47.619 26.43 16.12 37.81 4.52
187 190 0.403655 TGAAATGTGGTAGGCTGCCA 59.596 50.000 21.16 21.16 0.00 4.92
188 191 1.678101 GATGAAATGTGGTAGGCTGCC 59.322 52.381 15.45 15.45 0.00 4.85
189 192 2.615912 GAGATGAAATGTGGTAGGCTGC 59.384 50.000 0.00 0.00 0.00 5.25
190 193 4.148128 AGAGATGAAATGTGGTAGGCTG 57.852 45.455 0.00 0.00 0.00 4.85
191 194 5.957771 TTAGAGATGAAATGTGGTAGGCT 57.042 39.130 0.00 0.00 0.00 4.58
192 195 7.573968 AAATTAGAGATGAAATGTGGTAGGC 57.426 36.000 0.00 0.00 0.00 3.93
196 199 9.193806 AGCAATAAATTAGAGATGAAATGTGGT 57.806 29.630 0.00 0.00 0.00 4.16
197 200 9.674824 GAGCAATAAATTAGAGATGAAATGTGG 57.325 33.333 0.00 0.00 0.00 4.17
198 201 9.674824 GGAGCAATAAATTAGAGATGAAATGTG 57.325 33.333 0.00 0.00 0.00 3.21
199 202 9.638176 AGGAGCAATAAATTAGAGATGAAATGT 57.362 29.630 0.00 0.00 0.00 2.71
204 207 9.125026 GGAAAAGGAGCAATAAATTAGAGATGA 57.875 33.333 0.00 0.00 0.00 2.92
205 208 8.906867 TGGAAAAGGAGCAATAAATTAGAGATG 58.093 33.333 0.00 0.00 0.00 2.90
206 209 9.652114 ATGGAAAAGGAGCAATAAATTAGAGAT 57.348 29.630 0.00 0.00 0.00 2.75
207 210 9.479549 AATGGAAAAGGAGCAATAAATTAGAGA 57.520 29.630 0.00 0.00 0.00 3.10
211 214 9.762933 GCATAATGGAAAAGGAGCAATAAATTA 57.237 29.630 0.00 0.00 0.00 1.40
212 215 8.488668 AGCATAATGGAAAAGGAGCAATAAATT 58.511 29.630 0.00 0.00 0.00 1.82
213 216 8.026396 AGCATAATGGAAAAGGAGCAATAAAT 57.974 30.769 0.00 0.00 0.00 1.40
214 217 7.342799 AGAGCATAATGGAAAAGGAGCAATAAA 59.657 33.333 0.00 0.00 0.00 1.40
215 218 6.835488 AGAGCATAATGGAAAAGGAGCAATAA 59.165 34.615 0.00 0.00 0.00 1.40
216 219 6.367983 AGAGCATAATGGAAAAGGAGCAATA 58.632 36.000 0.00 0.00 0.00 1.90
217 220 5.206587 AGAGCATAATGGAAAAGGAGCAAT 58.793 37.500 0.00 0.00 0.00 3.56
218 221 4.603131 AGAGCATAATGGAAAAGGAGCAA 58.397 39.130 0.00 0.00 0.00 3.91
219 222 4.240881 AGAGCATAATGGAAAAGGAGCA 57.759 40.909 0.00 0.00 0.00 4.26
220 223 5.277538 CGTTAGAGCATAATGGAAAAGGAGC 60.278 44.000 0.00 0.00 0.00 4.70
221 224 5.817816 ACGTTAGAGCATAATGGAAAAGGAG 59.182 40.000 6.05 0.00 0.00 3.69
222 225 5.741011 ACGTTAGAGCATAATGGAAAAGGA 58.259 37.500 6.05 0.00 0.00 3.36
223 226 5.007724 GGACGTTAGAGCATAATGGAAAAGG 59.992 44.000 0.00 0.00 0.00 3.11
224 227 5.817816 AGGACGTTAGAGCATAATGGAAAAG 59.182 40.000 0.00 0.00 0.00 2.27
225 228 5.741011 AGGACGTTAGAGCATAATGGAAAA 58.259 37.500 0.00 0.00 0.00 2.29
226 229 5.353394 AGGACGTTAGAGCATAATGGAAA 57.647 39.130 0.00 0.00 0.00 3.13
227 230 5.353394 AAGGACGTTAGAGCATAATGGAA 57.647 39.130 0.00 0.00 0.00 3.53
228 231 5.116180 CAAAGGACGTTAGAGCATAATGGA 58.884 41.667 0.00 0.00 0.00 3.41
229 232 4.260784 GCAAAGGACGTTAGAGCATAATGG 60.261 45.833 0.00 0.00 0.00 3.16
230 233 4.332543 TGCAAAGGACGTTAGAGCATAATG 59.667 41.667 0.00 0.00 0.00 1.90
231 234 4.332819 GTGCAAAGGACGTTAGAGCATAAT 59.667 41.667 6.85 0.00 32.75 1.28
232 235 3.682858 GTGCAAAGGACGTTAGAGCATAA 59.317 43.478 6.85 0.00 32.75 1.90
233 236 3.056107 AGTGCAAAGGACGTTAGAGCATA 60.056 43.478 6.85 0.00 32.75 3.14
234 237 2.076863 GTGCAAAGGACGTTAGAGCAT 58.923 47.619 6.85 0.00 32.75 3.79
235 238 1.070134 AGTGCAAAGGACGTTAGAGCA 59.930 47.619 0.00 0.00 0.00 4.26
236 239 1.727335 GAGTGCAAAGGACGTTAGAGC 59.273 52.381 0.00 0.00 0.00 4.09
237 240 1.986378 CGAGTGCAAAGGACGTTAGAG 59.014 52.381 0.00 0.00 0.00 2.43
238 241 1.933500 GCGAGTGCAAAGGACGTTAGA 60.934 52.381 0.00 0.00 42.15 2.10
239 242 0.438830 GCGAGTGCAAAGGACGTTAG 59.561 55.000 0.00 0.00 42.15 2.34
240 243 1.279527 CGCGAGTGCAAAGGACGTTA 61.280 55.000 0.00 0.00 42.97 3.18
241 244 2.594962 CGCGAGTGCAAAGGACGTT 61.595 57.895 0.00 0.00 42.97 3.99
242 245 3.036084 CGCGAGTGCAAAGGACGT 61.036 61.111 0.00 0.00 42.97 4.34
243 246 3.777925 CCGCGAGTGCAAAGGACG 61.778 66.667 8.23 0.00 42.97 4.79
244 247 2.665185 ACCGCGAGTGCAAAGGAC 60.665 61.111 8.23 0.00 42.97 3.85
245 248 2.664851 CACCGCGAGTGCAAAGGA 60.665 61.111 8.23 0.00 42.97 3.36
259 262 2.953466 TACAGAAGATACGGTGCACC 57.047 50.000 26.78 26.78 0.00 5.01
260 263 4.181578 ACAATACAGAAGATACGGTGCAC 58.818 43.478 8.80 8.80 0.00 4.57
261 264 4.465632 ACAATACAGAAGATACGGTGCA 57.534 40.909 0.00 0.00 0.00 4.57
262 265 5.589192 AGTACAATACAGAAGATACGGTGC 58.411 41.667 0.00 0.00 0.00 5.01
263 266 6.207213 GGAGTACAATACAGAAGATACGGTG 58.793 44.000 0.00 0.00 0.00 4.94
264 267 5.301298 GGGAGTACAATACAGAAGATACGGT 59.699 44.000 0.00 0.00 0.00 4.83
265 268 5.535406 AGGGAGTACAATACAGAAGATACGG 59.465 44.000 0.00 0.00 0.00 4.02
266 269 6.487331 AGAGGGAGTACAATACAGAAGATACG 59.513 42.308 0.00 0.00 0.00 3.06
267 270 7.285858 ACAGAGGGAGTACAATACAGAAGATAC 59.714 40.741 0.00 0.00 0.00 2.24
268 271 7.355101 ACAGAGGGAGTACAATACAGAAGATA 58.645 38.462 0.00 0.00 0.00 1.98
269 272 6.198639 ACAGAGGGAGTACAATACAGAAGAT 58.801 40.000 0.00 0.00 0.00 2.40
270 273 5.580998 ACAGAGGGAGTACAATACAGAAGA 58.419 41.667 0.00 0.00 0.00 2.87
271 274 5.163499 GGACAGAGGGAGTACAATACAGAAG 60.163 48.000 0.00 0.00 0.00 2.85
272 275 4.710375 GGACAGAGGGAGTACAATACAGAA 59.290 45.833 0.00 0.00 0.00 3.02
273 276 4.279145 GGACAGAGGGAGTACAATACAGA 58.721 47.826 0.00 0.00 0.00 3.41
274 277 3.066900 CGGACAGAGGGAGTACAATACAG 59.933 52.174 0.00 0.00 0.00 2.74
286 289 4.430908 GACAAGTAATTACGGACAGAGGG 58.569 47.826 9.91 0.00 0.00 4.30
288 291 4.730657 ACGACAAGTAATTACGGACAGAG 58.269 43.478 9.91 3.21 0.00 3.35
289 292 4.771590 ACGACAAGTAATTACGGACAGA 57.228 40.909 9.91 0.00 0.00 3.41
290 293 6.932901 TTTACGACAAGTAATTACGGACAG 57.067 37.500 9.91 6.04 44.03 3.51
291 294 7.706281 TTTTTACGACAAGTAATTACGGACA 57.294 32.000 9.91 0.00 44.03 4.02
292 295 8.223100 ACATTTTTACGACAAGTAATTACGGAC 58.777 33.333 9.91 6.39 44.03 4.79
293 296 8.309163 ACATTTTTACGACAAGTAATTACGGA 57.691 30.769 9.91 0.00 44.03 4.69
327 330 8.923683 GTCTCAGCTAAAACTTAAAATACGTCT 58.076 33.333 0.00 0.00 0.00 4.18
328 331 8.706035 TGTCTCAGCTAAAACTTAAAATACGTC 58.294 33.333 0.00 0.00 0.00 4.34
329 332 8.597662 TGTCTCAGCTAAAACTTAAAATACGT 57.402 30.769 0.00 0.00 0.00 3.57
330 333 9.530129 CTTGTCTCAGCTAAAACTTAAAATACG 57.470 33.333 0.00 0.00 0.00 3.06
337 340 9.216117 GGAATTACTTGTCTCAGCTAAAACTTA 57.784 33.333 0.00 0.00 0.00 2.24
338 341 7.095187 CGGAATTACTTGTCTCAGCTAAAACTT 60.095 37.037 0.00 0.00 0.00 2.66
339 342 6.369065 CGGAATTACTTGTCTCAGCTAAAACT 59.631 38.462 0.00 0.00 0.00 2.66
340 343 6.367969 TCGGAATTACTTGTCTCAGCTAAAAC 59.632 38.462 0.00 0.00 0.00 2.43
341 344 6.460781 TCGGAATTACTTGTCTCAGCTAAAA 58.539 36.000 0.00 0.00 0.00 1.52
342 345 6.032956 TCGGAATTACTTGTCTCAGCTAAA 57.967 37.500 0.00 0.00 0.00 1.85
343 346 5.654603 TCGGAATTACTTGTCTCAGCTAA 57.345 39.130 0.00 0.00 0.00 3.09
344 347 5.408356 GTTCGGAATTACTTGTCTCAGCTA 58.592 41.667 0.00 0.00 0.00 3.32
345 348 4.246458 GTTCGGAATTACTTGTCTCAGCT 58.754 43.478 0.00 0.00 0.00 4.24
346 349 3.060895 CGTTCGGAATTACTTGTCTCAGC 59.939 47.826 0.00 0.00 0.00 4.26
347 350 3.612860 CCGTTCGGAATTACTTGTCTCAG 59.387 47.826 5.19 0.00 0.00 3.35
348 351 3.256383 TCCGTTCGGAATTACTTGTCTCA 59.744 43.478 11.66 0.00 0.00 3.27
349 352 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
350 353 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
351 354 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
352 355 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
353 356 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
354 357 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
355 358 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
356 359 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
357 360 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
358 361 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
359 362 2.083628 ATACTCCCTCCGTTCGGAAT 57.916 50.000 14.79 2.14 33.41 3.01
360 363 2.734755 TATACTCCCTCCGTTCGGAA 57.265 50.000 14.79 0.00 33.41 4.30
361 364 2.107031 TCATATACTCCCTCCGTTCGGA 59.893 50.000 13.34 13.34 0.00 4.55
362 365 2.511659 TCATATACTCCCTCCGTTCGG 58.488 52.381 4.74 4.74 0.00 4.30
363 366 5.589050 TCATATCATATACTCCCTCCGTTCG 59.411 44.000 0.00 0.00 0.00 3.95
364 367 7.406031 TTCATATCATATACTCCCTCCGTTC 57.594 40.000 0.00 0.00 0.00 3.95
365 368 7.619698 TCATTCATATCATATACTCCCTCCGTT 59.380 37.037 0.00 0.00 0.00 4.44
366 369 7.126061 TCATTCATATCATATACTCCCTCCGT 58.874 38.462 0.00 0.00 0.00 4.69
367 370 7.588497 TCATTCATATCATATACTCCCTCCG 57.412 40.000 0.00 0.00 0.00 4.63
368 371 9.775854 CATTCATTCATATCATATACTCCCTCC 57.224 37.037 0.00 0.00 0.00 4.30
426 429 9.388506 TCACAAAAATGTTACATGGAAAAATGT 57.611 25.926 0.00 0.00 43.21 2.71
427 430 9.649024 GTCACAAAAATGTTACATGGAAAAATG 57.351 29.630 0.00 0.00 0.00 2.32
428 431 9.388506 TGTCACAAAAATGTTACATGGAAAAAT 57.611 25.926 0.00 0.00 0.00 1.82
429 432 8.777865 TGTCACAAAAATGTTACATGGAAAAA 57.222 26.923 0.00 0.00 0.00 1.94
430 433 8.777865 TTGTCACAAAAATGTTACATGGAAAA 57.222 26.923 0.00 0.00 0.00 2.29
431 434 8.037758 ACTTGTCACAAAAATGTTACATGGAAA 58.962 29.630 0.00 0.00 30.33 3.13
432 435 7.551585 ACTTGTCACAAAAATGTTACATGGAA 58.448 30.769 0.00 0.00 30.33 3.53
433 436 7.106439 ACTTGTCACAAAAATGTTACATGGA 57.894 32.000 0.00 0.00 30.33 3.41
434 437 8.134895 ACTACTTGTCACAAAAATGTTACATGG 58.865 33.333 0.00 0.00 30.33 3.66
435 438 9.515020 AACTACTTGTCACAAAAATGTTACATG 57.485 29.630 0.00 0.00 31.55 3.21
436 439 9.730420 GAACTACTTGTCACAAAAATGTTACAT 57.270 29.630 0.00 0.00 0.00 2.29
437 440 8.731605 TGAACTACTTGTCACAAAAATGTTACA 58.268 29.630 0.00 0.00 0.00 2.41
438 441 9.221775 CTGAACTACTTGTCACAAAAATGTTAC 57.778 33.333 0.00 0.00 0.00 2.50
439 442 8.402472 CCTGAACTACTTGTCACAAAAATGTTA 58.598 33.333 0.00 0.00 0.00 2.41
440 443 7.122055 TCCTGAACTACTTGTCACAAAAATGTT 59.878 33.333 0.00 0.00 0.00 2.71
441 444 6.601613 TCCTGAACTACTTGTCACAAAAATGT 59.398 34.615 0.00 0.00 0.00 2.71
442 445 6.912591 GTCCTGAACTACTTGTCACAAAAATG 59.087 38.462 0.00 0.00 0.00 2.32
443 446 6.238374 CGTCCTGAACTACTTGTCACAAAAAT 60.238 38.462 0.00 0.00 0.00 1.82
444 447 5.064198 CGTCCTGAACTACTTGTCACAAAAA 59.936 40.000 0.00 0.00 0.00 1.94
445 448 4.569162 CGTCCTGAACTACTTGTCACAAAA 59.431 41.667 0.00 0.00 0.00 2.44
446 449 4.116961 CGTCCTGAACTACTTGTCACAAA 58.883 43.478 0.00 0.00 0.00 2.83
447 450 3.491964 CCGTCCTGAACTACTTGTCACAA 60.492 47.826 0.00 0.00 0.00 3.33
448 451 2.035449 CCGTCCTGAACTACTTGTCACA 59.965 50.000 0.00 0.00 0.00 3.58
449 452 2.295349 TCCGTCCTGAACTACTTGTCAC 59.705 50.000 0.00 0.00 0.00 3.67
450 453 2.557056 CTCCGTCCTGAACTACTTGTCA 59.443 50.000 0.00 0.00 0.00 3.58
451 454 2.094649 CCTCCGTCCTGAACTACTTGTC 60.095 54.545 0.00 0.00 0.00 3.18
452 455 1.893801 CCTCCGTCCTGAACTACTTGT 59.106 52.381 0.00 0.00 0.00 3.16
453 456 2.168496 TCCTCCGTCCTGAACTACTTG 58.832 52.381 0.00 0.00 0.00 3.16
454 457 2.599408 TCCTCCGTCCTGAACTACTT 57.401 50.000 0.00 0.00 0.00 2.24
455 458 2.599408 TTCCTCCGTCCTGAACTACT 57.401 50.000 0.00 0.00 0.00 2.57
456 459 3.672767 TTTTCCTCCGTCCTGAACTAC 57.327 47.619 0.00 0.00 0.00 2.73
457 460 5.897824 AGATATTTTCCTCCGTCCTGAACTA 59.102 40.000 0.00 0.00 0.00 2.24
458 461 4.717280 AGATATTTTCCTCCGTCCTGAACT 59.283 41.667 0.00 0.00 0.00 3.01
459 462 5.024785 AGATATTTTCCTCCGTCCTGAAC 57.975 43.478 0.00 0.00 0.00 3.18
460 463 5.221185 CGTAGATATTTTCCTCCGTCCTGAA 60.221 44.000 0.00 0.00 0.00 3.02
461 464 4.277672 CGTAGATATTTTCCTCCGTCCTGA 59.722 45.833 0.00 0.00 0.00 3.86
462 465 4.277672 TCGTAGATATTTTCCTCCGTCCTG 59.722 45.833 0.00 0.00 0.00 3.86
463 466 4.467769 TCGTAGATATTTTCCTCCGTCCT 58.532 43.478 0.00 0.00 0.00 3.85
464 467 4.843220 TCGTAGATATTTTCCTCCGTCC 57.157 45.455 0.00 0.00 0.00 4.79
465 468 8.807667 TTAATTCGTAGATATTTTCCTCCGTC 57.192 34.615 0.00 0.00 35.04 4.79
466 469 8.636213 TCTTAATTCGTAGATATTTTCCTCCGT 58.364 33.333 0.00 0.00 35.04 4.69
467 470 9.472361 TTCTTAATTCGTAGATATTTTCCTCCG 57.528 33.333 0.00 0.00 35.04 4.63
486 489 8.811994 GGCCTCTATCTAGATCAGTTTCTTAAT 58.188 37.037 8.95 0.00 0.00 1.40
487 490 7.785028 TGGCCTCTATCTAGATCAGTTTCTTAA 59.215 37.037 8.95 0.00 0.00 1.85
488 491 7.298374 TGGCCTCTATCTAGATCAGTTTCTTA 58.702 38.462 8.95 0.00 0.00 2.10
489 492 6.139671 TGGCCTCTATCTAGATCAGTTTCTT 58.860 40.000 8.95 0.00 0.00 2.52
490 493 5.710646 TGGCCTCTATCTAGATCAGTTTCT 58.289 41.667 8.95 0.00 0.00 2.52
491 494 6.412362 TTGGCCTCTATCTAGATCAGTTTC 57.588 41.667 8.95 0.00 0.00 2.78
492 495 6.587273 GTTTGGCCTCTATCTAGATCAGTTT 58.413 40.000 8.95 0.00 0.00 2.66
493 496 5.221342 CGTTTGGCCTCTATCTAGATCAGTT 60.221 44.000 8.95 0.00 0.00 3.16
494 497 4.279671 CGTTTGGCCTCTATCTAGATCAGT 59.720 45.833 8.95 0.00 0.00 3.41
495 498 4.321601 CCGTTTGGCCTCTATCTAGATCAG 60.322 50.000 8.95 6.57 0.00 2.90
496 499 3.574396 CCGTTTGGCCTCTATCTAGATCA 59.426 47.826 8.95 0.00 0.00 2.92
497 500 3.574826 ACCGTTTGGCCTCTATCTAGATC 59.425 47.826 8.95 0.00 39.70 2.75
498 501 3.577919 ACCGTTTGGCCTCTATCTAGAT 58.422 45.455 10.73 10.73 39.70 1.98
499 502 3.028094 ACCGTTTGGCCTCTATCTAGA 57.972 47.619 3.32 0.00 39.70 2.43
500 503 3.118738 ACAACCGTTTGGCCTCTATCTAG 60.119 47.826 3.32 0.00 39.70 2.43
501 504 2.835764 ACAACCGTTTGGCCTCTATCTA 59.164 45.455 3.32 0.00 39.70 1.98
502 505 1.628846 ACAACCGTTTGGCCTCTATCT 59.371 47.619 3.32 0.00 39.70 1.98
503 506 1.737793 CACAACCGTTTGGCCTCTATC 59.262 52.381 3.32 0.00 39.70 2.08
504 507 1.613255 CCACAACCGTTTGGCCTCTAT 60.613 52.381 3.32 0.00 39.70 1.98
505 508 0.250553 CCACAACCGTTTGGCCTCTA 60.251 55.000 3.32 0.00 39.70 2.43
506 509 1.528309 CCACAACCGTTTGGCCTCT 60.528 57.895 3.32 0.00 39.70 3.69
507 510 1.515521 CTCCACAACCGTTTGGCCTC 61.516 60.000 3.32 0.00 39.70 4.70
508 511 1.528309 CTCCACAACCGTTTGGCCT 60.528 57.895 3.32 0.00 39.70 5.19
509 512 1.388837 AACTCCACAACCGTTTGGCC 61.389 55.000 0.00 0.00 39.70 5.36
510 513 0.248866 CAACTCCACAACCGTTTGGC 60.249 55.000 0.00 0.00 39.70 4.52
511 514 0.383949 CCAACTCCACAACCGTTTGG 59.616 55.000 0.00 6.27 37.00 3.28
512 515 0.248866 GCCAACTCCACAACCGTTTG 60.249 55.000 0.00 0.00 38.83 2.93
513 516 1.388837 GGCCAACTCCACAACCGTTT 61.389 55.000 0.00 0.00 0.00 3.60
514 517 1.826487 GGCCAACTCCACAACCGTT 60.826 57.895 0.00 0.00 0.00 4.44
515 518 2.203294 GGCCAACTCCACAACCGT 60.203 61.111 0.00 0.00 0.00 4.83
516 519 1.178534 AATGGCCAACTCCACAACCG 61.179 55.000 10.96 0.00 39.25 4.44
517 520 0.318120 CAATGGCCAACTCCACAACC 59.682 55.000 10.96 0.00 39.25 3.77
518 521 0.318120 CCAATGGCCAACTCCACAAC 59.682 55.000 10.96 0.00 39.25 3.32
519 522 1.470996 GCCAATGGCCAACTCCACAA 61.471 55.000 14.47 0.00 44.06 3.33
520 523 1.907807 GCCAATGGCCAACTCCACA 60.908 57.895 14.47 0.00 44.06 4.17
521 524 2.973082 GCCAATGGCCAACTCCAC 59.027 61.111 14.47 0.00 44.06 4.02
532 535 2.429610 CAGAGGGGAAAATGAGCCAATG 59.570 50.000 0.00 0.00 0.00 2.82
536 539 0.323725 TGCAGAGGGGAAAATGAGCC 60.324 55.000 0.00 0.00 0.00 4.70
537 540 1.549203 TTGCAGAGGGGAAAATGAGC 58.451 50.000 0.00 0.00 0.00 4.26
539 542 3.261390 CCAAATTGCAGAGGGGAAAATGA 59.739 43.478 0.00 0.00 0.00 2.57
542 545 1.347378 GCCAAATTGCAGAGGGGAAAA 59.653 47.619 1.26 0.00 0.00 2.29
566 569 7.476540 TTGCCTTTGATACTAGTACTGAGAA 57.523 36.000 4.31 0.00 0.00 2.87
570 573 7.770897 AGGATTTTGCCTTTGATACTAGTACTG 59.229 37.037 4.31 0.00 33.46 2.74
571 574 7.770897 CAGGATTTTGCCTTTGATACTAGTACT 59.229 37.037 4.31 0.00 35.66 2.73
575 578 5.357878 TGCAGGATTTTGCCTTTGATACTAG 59.642 40.000 0.00 0.00 43.43 2.57
577 580 4.082026 GTGCAGGATTTTGCCTTTGATACT 60.082 41.667 0.00 0.00 43.43 2.12
578 581 4.176271 GTGCAGGATTTTGCCTTTGATAC 58.824 43.478 0.00 0.00 43.43 2.24
582 585 2.529780 TGTGCAGGATTTTGCCTTTG 57.470 45.000 0.00 0.00 43.43 2.77
585 588 3.775261 AATTTGTGCAGGATTTTGCCT 57.225 38.095 0.00 0.00 43.43 4.75
586 589 4.516321 AGAAAATTTGTGCAGGATTTTGCC 59.484 37.500 15.38 6.21 43.43 4.52
587 590 5.678132 AGAAAATTTGTGCAGGATTTTGC 57.322 34.783 15.38 9.50 44.33 3.68
588 591 7.095523 CCAGTAGAAAATTTGTGCAGGATTTTG 60.096 37.037 15.38 5.65 34.22 2.44
594 601 3.578688 GCCAGTAGAAAATTTGTGCAGG 58.421 45.455 0.00 0.00 0.00 4.85
603 610 3.844211 TGGTCTGTAGGCCAGTAGAAAAT 59.156 43.478 5.01 0.00 42.19 1.82
607 614 1.618888 GGTGGTCTGTAGGCCAGTAGA 60.619 57.143 5.01 1.54 42.19 2.59
620 630 5.419788 TCACGTACTATATGTTTGGTGGTCT 59.580 40.000 0.00 0.00 0.00 3.85
627 637 4.376008 GCGGCATCACGTACTATATGTTTG 60.376 45.833 0.00 0.00 35.98 2.93
630 640 2.295070 TGCGGCATCACGTACTATATGT 59.705 45.455 0.00 0.00 35.98 2.29
631 641 2.917343 CTGCGGCATCACGTACTATATG 59.083 50.000 1.75 0.00 35.98 1.78
633 643 1.335597 GCTGCGGCATCACGTACTATA 60.336 52.381 14.08 0.00 38.54 1.31
634 644 0.597637 GCTGCGGCATCACGTACTAT 60.598 55.000 14.08 0.00 38.54 2.12
635 645 1.226859 GCTGCGGCATCACGTACTA 60.227 57.895 14.08 0.00 38.54 1.82
637 647 2.509336 AGCTGCGGCATCACGTAC 60.509 61.111 21.93 0.00 41.70 3.67
638 648 2.509111 CAGCTGCGGCATCACGTA 60.509 61.111 21.93 0.00 41.70 3.57
639 649 4.377708 TCAGCTGCGGCATCACGT 62.378 61.111 21.93 0.00 41.70 4.49
640 650 3.857854 GTCAGCTGCGGCATCACG 61.858 66.667 21.93 2.33 41.70 4.35
641 651 2.435586 AGTCAGCTGCGGCATCAC 60.436 61.111 21.93 12.65 41.70 3.06
642 652 2.125391 GAGTCAGCTGCGGCATCA 60.125 61.111 21.93 0.00 41.70 3.07
644 654 3.300934 TTCGAGTCAGCTGCGGCAT 62.301 57.895 21.93 1.79 41.70 4.40
645 655 3.921767 CTTCGAGTCAGCTGCGGCA 62.922 63.158 21.93 1.29 41.70 5.69
646 656 3.184683 CTTCGAGTCAGCTGCGGC 61.185 66.667 10.33 10.33 39.06 6.53
647 657 1.803519 GACTTCGAGTCAGCTGCGG 60.804 63.158 9.47 2.71 44.45 5.69
655 665 5.924475 TTTTTCCATTGAGACTTCGAGTC 57.076 39.130 6.85 6.85 45.38 3.36
656 666 5.182001 CCATTTTTCCATTGAGACTTCGAGT 59.818 40.000 0.00 0.00 0.00 4.18
657 667 5.182001 ACCATTTTTCCATTGAGACTTCGAG 59.818 40.000 0.00 0.00 0.00 4.04
658 668 5.048782 CACCATTTTTCCATTGAGACTTCGA 60.049 40.000 0.00 0.00 0.00 3.71
660 670 6.331369 TCACCATTTTTCCATTGAGACTTC 57.669 37.500 0.00 0.00 0.00 3.01
661 671 6.071165 GGATCACCATTTTTCCATTGAGACTT 60.071 38.462 0.00 0.00 35.97 3.01
662 672 5.420104 GGATCACCATTTTTCCATTGAGACT 59.580 40.000 0.00 0.00 35.97 3.24
663 673 5.185635 TGGATCACCATTTTTCCATTGAGAC 59.814 40.000 0.00 0.00 41.77 3.36
664 674 5.331906 TGGATCACCATTTTTCCATTGAGA 58.668 37.500 0.00 0.00 41.77 3.27
665 675 5.664294 TGGATCACCATTTTTCCATTGAG 57.336 39.130 0.00 0.00 41.77 3.02
668 678 6.879367 AGATTGGATCACCATTTTTCCATT 57.121 33.333 0.00 0.00 46.34 3.16
669 679 6.441284 TCAAGATTGGATCACCATTTTTCCAT 59.559 34.615 0.00 0.00 46.34 3.41
670 680 5.779260 TCAAGATTGGATCACCATTTTTCCA 59.221 36.000 0.00 0.00 46.34 3.53
671 681 6.101997 GTCAAGATTGGATCACCATTTTTCC 58.898 40.000 0.00 0.00 46.34 3.13
672 682 5.801947 CGTCAAGATTGGATCACCATTTTTC 59.198 40.000 0.00 0.00 46.34 2.29
674 684 4.766891 ACGTCAAGATTGGATCACCATTTT 59.233 37.500 0.00 0.00 46.34 1.82
678 688 2.354704 GGACGTCAAGATTGGATCACCA 60.355 50.000 18.91 0.00 45.34 4.17
679 689 2.280628 GGACGTCAAGATTGGATCACC 58.719 52.381 18.91 0.00 0.00 4.02
680 690 1.927174 CGGACGTCAAGATTGGATCAC 59.073 52.381 18.91 0.00 0.00 3.06
683 693 1.469251 CGTCGGACGTCAAGATTGGAT 60.469 52.381 21.68 0.00 36.74 3.41
684 694 0.109458 CGTCGGACGTCAAGATTGGA 60.109 55.000 21.68 0.00 36.74 3.53
685 695 1.683790 GCGTCGGACGTCAAGATTGG 61.684 60.000 28.75 10.30 44.73 3.16
686 696 1.006825 TGCGTCGGACGTCAAGATTG 61.007 55.000 28.75 12.96 44.73 2.67
687 697 0.319211 TTGCGTCGGACGTCAAGATT 60.319 50.000 28.75 0.00 44.73 2.40
688 698 1.287815 TTGCGTCGGACGTCAAGAT 59.712 52.632 28.75 0.00 44.73 2.40
689 699 2.723116 TTGCGTCGGACGTCAAGA 59.277 55.556 28.75 13.21 44.73 3.02
690 700 3.147294 CTTGCGTCGGACGTCAAG 58.853 61.111 32.10 32.10 44.73 3.02
691 701 1.659335 GACTTGCGTCGGACGTCAA 60.659 57.895 28.75 27.35 44.73 3.18
704 714 0.933047 TCGAGACACGTTGCGACTTG 60.933 55.000 8.97 8.97 43.13 3.16
705 715 0.248743 TTCGAGACACGTTGCGACTT 60.249 50.000 1.84 0.00 43.13 3.01
706 716 0.248743 TTTCGAGACACGTTGCGACT 60.249 50.000 1.84 0.00 43.13 4.18
707 717 0.111835 GTTTCGAGACACGTTGCGAC 60.112 55.000 0.39 0.00 43.13 5.19
708 718 0.248743 AGTTTCGAGACACGTTGCGA 60.249 50.000 8.98 0.00 43.13 5.10
709 719 1.382419 CTAGTTTCGAGACACGTTGCG 59.618 52.381 8.98 0.00 43.13 4.85
710 720 2.391879 ACTAGTTTCGAGACACGTTGC 58.608 47.619 8.98 0.00 43.13 4.17
711 721 2.650765 CGACTAGTTTCGAGACACGTTG 59.349 50.000 8.98 5.00 41.78 4.10
712 722 2.289002 ACGACTAGTTTCGAGACACGTT 59.711 45.455 8.98 0.00 41.78 3.99
713 723 1.869767 ACGACTAGTTTCGAGACACGT 59.130 47.619 8.98 10.84 41.78 4.49
714 724 2.591066 ACGACTAGTTTCGAGACACG 57.409 50.000 8.98 10.28 41.78 4.49
715 725 5.078745 GTCTAACGACTAGTTTCGAGACAC 58.921 45.833 17.37 0.00 41.83 3.67
718 728 4.573900 AGGTCTAACGACTAGTTTCGAGA 58.426 43.478 10.62 3.23 43.86 4.04
719 729 4.201802 GGAGGTCTAACGACTAGTTTCGAG 60.202 50.000 10.62 0.99 43.86 4.04
720 730 3.686726 GGAGGTCTAACGACTAGTTTCGA 59.313 47.826 10.62 0.00 43.86 3.71
721 731 3.181502 GGGAGGTCTAACGACTAGTTTCG 60.182 52.174 0.00 0.00 43.86 3.46
722 732 3.130164 GGGGAGGTCTAACGACTAGTTTC 59.870 52.174 0.00 0.00 43.86 2.78
723 733 3.095332 GGGGAGGTCTAACGACTAGTTT 58.905 50.000 0.00 0.00 43.86 2.66
725 735 1.921748 AGGGGAGGTCTAACGACTAGT 59.078 52.381 0.00 0.00 40.10 2.57
726 736 2.732844 AGGGGAGGTCTAACGACTAG 57.267 55.000 0.00 0.00 40.10 2.57
727 737 4.166725 TGATTAGGGGAGGTCTAACGACTA 59.833 45.833 0.00 0.00 40.10 2.59
728 738 3.053095 TGATTAGGGGAGGTCTAACGACT 60.053 47.826 0.00 0.00 40.10 4.18
729 739 3.067883 GTGATTAGGGGAGGTCTAACGAC 59.932 52.174 0.00 0.00 39.49 4.34
731 741 3.297736 AGTGATTAGGGGAGGTCTAACG 58.702 50.000 0.00 0.00 30.61 3.18
733 743 6.935036 AGAATAGTGATTAGGGGAGGTCTAA 58.065 40.000 0.00 0.00 0.00 2.10
734 744 6.547396 AGAATAGTGATTAGGGGAGGTCTA 57.453 41.667 0.00 0.00 0.00 2.59
735 745 5.426325 AGAATAGTGATTAGGGGAGGTCT 57.574 43.478 0.00 0.00 0.00 3.85
736 746 6.502074 AAAGAATAGTGATTAGGGGAGGTC 57.498 41.667 0.00 0.00 0.00 3.85
737 747 7.371043 TCTAAAGAATAGTGATTAGGGGAGGT 58.629 38.462 0.00 0.00 0.00 3.85
740 750 9.094578 CTCATCTAAAGAATAGTGATTAGGGGA 57.905 37.037 0.00 0.00 0.00 4.81
747 757 9.995003 GTTGGATCTCATCTAAAGAATAGTGAT 57.005 33.333 0.00 0.00 31.33 3.06
749 759 8.428063 AGGTTGGATCTCATCTAAAGAATAGTG 58.572 37.037 0.00 0.00 31.33 2.74
750 760 8.560124 AGGTTGGATCTCATCTAAAGAATAGT 57.440 34.615 0.00 0.00 31.33 2.12
751 761 9.270640 CAAGGTTGGATCTCATCTAAAGAATAG 57.729 37.037 0.00 0.00 31.33 1.73
752 762 8.992349 TCAAGGTTGGATCTCATCTAAAGAATA 58.008 33.333 0.00 0.00 31.33 1.75
753 763 7.865820 TCAAGGTTGGATCTCATCTAAAGAAT 58.134 34.615 0.00 0.00 31.33 2.40
756 766 7.052873 ACATCAAGGTTGGATCTCATCTAAAG 58.947 38.462 0.00 0.00 31.33 1.85
760 770 5.447778 AACATCAAGGTTGGATCTCATCT 57.552 39.130 0.00 0.00 0.00 2.90
761 771 5.220739 CGAAACATCAAGGTTGGATCTCATC 60.221 44.000 0.00 0.00 0.00 2.92
764 774 4.093556 GTCGAAACATCAAGGTTGGATCTC 59.906 45.833 0.00 0.00 34.06 2.75
773 783 1.798223 TGCTTCGTCGAAACATCAAGG 59.202 47.619 9.30 0.00 0.00 3.61
895 967 2.356433 TCATCAACGGCGCGTGAA 60.356 55.556 16.43 0.36 39.99 3.18
903 975 1.421485 GCAGCGAAGTCATCAACGG 59.579 57.895 0.00 0.00 0.00 4.44
908 980 0.462581 TCATGGGCAGCGAAGTCATC 60.463 55.000 0.00 0.00 0.00 2.92
909 981 0.745845 GTCATGGGCAGCGAAGTCAT 60.746 55.000 0.00 0.00 0.00 3.06
910 982 1.375908 GTCATGGGCAGCGAAGTCA 60.376 57.895 0.00 0.00 0.00 3.41
911 983 2.456119 CGTCATGGGCAGCGAAGTC 61.456 63.158 0.00 0.00 0.00 3.01
912 984 2.434884 CGTCATGGGCAGCGAAGT 60.435 61.111 0.00 0.00 0.00 3.01
913 985 2.125552 TCGTCATGGGCAGCGAAG 60.126 61.111 0.00 0.00 0.00 3.79
914 986 2.434185 GTCGTCATGGGCAGCGAA 60.434 61.111 0.00 0.00 35.08 4.70
915 987 3.647649 CTGTCGTCATGGGCAGCGA 62.648 63.158 0.00 0.00 0.00 4.93
916 988 3.190849 CTGTCGTCATGGGCAGCG 61.191 66.667 0.00 0.00 0.00 5.18
975 1047 4.641868 AGGGAGGAGGTTGGTATTTATCA 58.358 43.478 0.00 0.00 0.00 2.15
987 1085 1.837533 TTGGGATGGAGGGAGGAGGT 61.838 60.000 0.00 0.00 0.00 3.85
1031 1129 4.149598 TCTGTGTGTACAAGGCTAGAAGA 58.850 43.478 0.00 0.00 36.14 2.87
1043 1141 2.095161 AGACGCTTAGCTCTGTGTGTAC 60.095 50.000 9.37 0.00 0.00 2.90
1061 1160 3.533547 AGATGAGATGAAGCAAGCAGAC 58.466 45.455 0.00 0.00 0.00 3.51
1085 1185 1.369321 GATGGTGATCGGGAGAGGC 59.631 63.158 0.00 0.00 45.48 4.70
1094 1196 1.664965 GTAGCCGCCGATGGTGATC 60.665 63.158 0.00 0.00 34.74 2.92
1104 1206 3.816367 GAGCCATCTGGTAGCCGCC 62.816 68.421 0.00 0.00 37.57 6.13
1107 1209 2.280457 GCGAGCCATCTGGTAGCC 60.280 66.667 0.00 0.00 37.57 3.93
1505 7299 7.919690 TCCGCAGAAACAATCTAAATTCTATG 58.080 34.615 0.00 0.00 36.32 2.23
1509 7369 7.475840 AGAATCCGCAGAAACAATCTAAATTC 58.524 34.615 0.00 0.00 36.32 2.17
1549 7411 4.142609 AGCAATGTCGTGTAATCTCCAT 57.857 40.909 0.00 0.00 0.00 3.41
1552 7414 7.694388 TTACATAGCAATGTCGTGTAATCTC 57.306 36.000 0.00 0.00 42.92 2.75
1704 7574 2.570302 TCCCTGCTCCTACCAGTAAAAC 59.430 50.000 0.00 0.00 0.00 2.43
1754 7624 5.934402 ATTTAAGAAAGGCGAGTCTCCTA 57.066 39.130 1.10 0.00 32.65 2.94
1810 7680 2.292828 AGAGGGTGAATTTGGTGGTG 57.707 50.000 0.00 0.00 0.00 4.17
1835 7705 1.001706 GAGTTTTTCGGCAACAGGGAC 60.002 52.381 0.00 0.00 0.00 4.46
1965 7846 1.988107 TCATGCCCTCTCCAAGAACTT 59.012 47.619 0.00 0.00 0.00 2.66
1988 7869 5.509840 GCTGTCATCGACCCACTCTAATTAT 60.510 44.000 0.00 0.00 0.00 1.28
2012 7963 1.801178 GTCCTCTCTTTTTGAGCGTGG 59.199 52.381 0.00 0.00 42.38 4.94
2024 8414 7.309133 CGCTCTAATTATTCTCATGTCCTCTCT 60.309 40.741 0.00 0.00 0.00 3.10
2027 8417 5.866633 CCGCTCTAATTATTCTCATGTCCTC 59.133 44.000 0.00 0.00 0.00 3.71
2028 8418 5.540337 TCCGCTCTAATTATTCTCATGTCCT 59.460 40.000 0.00 0.00 0.00 3.85
2030 8420 6.451393 AGTCCGCTCTAATTATTCTCATGTC 58.549 40.000 0.00 0.00 0.00 3.06
2045 8435 5.602628 GGTGAGAATAATTAAGTCCGCTCT 58.397 41.667 0.00 0.00 0.00 4.09
2047 8437 4.369182 CGGTGAGAATAATTAAGTCCGCT 58.631 43.478 0.00 0.00 0.00 5.52
2048 8438 4.710528 CGGTGAGAATAATTAAGTCCGC 57.289 45.455 0.00 0.00 0.00 5.54
2049 8439 4.369182 AGCGGTGAGAATAATTAAGTCCG 58.631 43.478 0.00 0.00 38.67 4.79
2051 8441 6.757010 TCAAGAGCGGTGAGAATAATTAAGTC 59.243 38.462 0.00 0.00 0.00 3.01
2052 8442 6.640518 TCAAGAGCGGTGAGAATAATTAAGT 58.359 36.000 0.00 0.00 0.00 2.24
2053 8443 6.980978 TCTCAAGAGCGGTGAGAATAATTAAG 59.019 38.462 12.75 0.00 46.57 1.85
2055 8445 6.465439 TCTCAAGAGCGGTGAGAATAATTA 57.535 37.500 12.75 0.00 46.57 1.40
2056 8446 5.344743 TCTCAAGAGCGGTGAGAATAATT 57.655 39.130 12.75 0.00 46.57 1.40
2063 8453 1.270305 TGGTTTCTCAAGAGCGGTGAG 60.270 52.381 0.00 7.73 43.28 3.51
2065 8455 1.532868 CTTGGTTTCTCAAGAGCGGTG 59.467 52.381 0.00 0.00 44.98 4.94
2066 8456 1.543429 CCTTGGTTTCTCAAGAGCGGT 60.543 52.381 6.21 0.00 44.98 5.68
2067 8457 1.160137 CCTTGGTTTCTCAAGAGCGG 58.840 55.000 6.21 0.00 44.98 5.52
2068 8458 1.160137 CCCTTGGTTTCTCAAGAGCG 58.840 55.000 6.21 0.00 44.98 5.03
2070 8460 5.047731 GGAATTTCCCTTGGTTTCTCAAGAG 60.048 44.000 3.89 0.00 44.98 2.85
2072 8462 4.588528 TGGAATTTCCCTTGGTTTCTCAAG 59.411 41.667 12.90 0.00 42.63 3.02
2073 8463 4.551671 TGGAATTTCCCTTGGTTTCTCAA 58.448 39.130 12.90 0.00 35.03 3.02
2074 8464 4.151883 CTGGAATTTCCCTTGGTTTCTCA 58.848 43.478 12.90 0.00 35.03 3.27
2176 8833 3.635331 CGAACTTCCGTGTTCACTTCTA 58.365 45.455 11.71 0.00 44.59 2.10
2427 9093 3.284449 GCCAAGTTCACGGCGGTT 61.284 61.111 13.24 0.00 38.82 4.44
2559 9225 4.215965 CGTGTTTATTTCCAAGTTCGTGG 58.784 43.478 0.00 0.00 40.33 4.94
2570 9236 2.413634 CCAAGGACCGCGTGTTTATTTC 60.414 50.000 4.92 0.00 0.00 2.17
2578 9244 1.597027 AGAAACCAAGGACCGCGTG 60.597 57.895 4.92 0.00 0.00 5.34
2581 9247 1.452145 TTGCAGAAACCAAGGACCGC 61.452 55.000 0.00 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.