Multiple sequence alignment - TraesCS4B01G303200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G303200 chr4B 100.000 3359 0 0 1 3359 590861882 590865240 0.000000e+00 6204.0
1 TraesCS4B01G303200 chr4B 98.227 282 5 0 43 324 453049235 453049516 8.370000e-136 494.0
2 TraesCS4B01G303200 chr4B 98.227 282 5 0 43 324 537256645 537256364 8.370000e-136 494.0
3 TraesCS4B01G303200 chr4B 97.849 279 6 0 46 324 595705838 595706116 1.810000e-132 483.0
4 TraesCS4B01G303200 chr4A 92.873 1852 56 22 567 2366 1877301 1875474 0.000000e+00 2619.0
5 TraesCS4B01G303200 chr4D 92.109 1280 54 16 1415 2658 469615225 469616493 0.000000e+00 1760.0
6 TraesCS4B01G303200 chr4D 94.863 837 30 6 567 1401 469614239 469615064 0.000000e+00 1295.0
7 TraesCS4B01G303200 chr4D 86.918 451 44 10 2914 3357 469619843 469620285 3.010000e-135 492.0
8 TraesCS4B01G303200 chr6A 88.385 706 32 19 1051 1716 325034872 325035567 0.000000e+00 804.0
9 TraesCS4B01G303200 chr1B 99.283 279 2 0 46 324 660398845 660398567 3.870000e-139 505.0
10 TraesCS4B01G303200 chr1B 98.208 279 5 0 46 324 37568286 37568564 3.900000e-134 488.0
11 TraesCS4B01G303200 chr7B 98.545 275 4 0 48 322 709760385 709760111 1.400000e-133 486.0
12 TraesCS4B01G303200 chr7B 97.849 279 6 0 48 326 629873219 629872941 1.810000e-132 483.0
13 TraesCS4B01G303200 chr7B 79.562 137 25 1 2830 2963 5120835 5120971 9.920000e-16 95.3
14 TraesCS4B01G303200 chr5B 97.857 280 6 0 46 325 66293134 66293413 5.040000e-133 484.0
15 TraesCS4B01G303200 chr5B 97.518 282 7 0 43 324 487639106 487639387 1.810000e-132 483.0
16 TraesCS4B01G303200 chr5D 84.496 258 27 7 2826 3077 278630941 278631191 3.350000e-60 243.0
17 TraesCS4B01G303200 chr6D 85.315 143 20 1 2656 2797 14896273 14896415 2.700000e-31 147.0
18 TraesCS4B01G303200 chr3D 77.912 249 30 11 2835 3079 579587094 579586867 7.560000e-27 132.0
19 TraesCS4B01G303200 chr7A 90.323 62 6 0 2836 2897 3058660 3058599 7.720000e-12 82.4
20 TraesCS4B01G303200 chr2A 84.615 78 7 2 2901 2975 764825462 764825537 4.650000e-09 73.1
21 TraesCS4B01G303200 chr3B 90.741 54 4 1 2995 3048 773005847 773005795 1.670000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G303200 chr4B 590861882 590865240 3358 False 6204.000000 6204 100.000000 1 3359 1 chr4B.!!$F2 3358
1 TraesCS4B01G303200 chr4A 1875474 1877301 1827 True 2619.000000 2619 92.873000 567 2366 1 chr4A.!!$R1 1799
2 TraesCS4B01G303200 chr4D 469614239 469620285 6046 False 1182.333333 1760 91.296667 567 3357 3 chr4D.!!$F1 2790
3 TraesCS4B01G303200 chr6A 325034872 325035567 695 False 804.000000 804 88.385000 1051 1716 1 chr6A.!!$F1 665

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
38 39 0.028505 GCCAGTTGCGCACATGATAG 59.971 55.0 11.12 0.32 0.0 2.08 F
39 40 0.028505 CCAGTTGCGCACATGATAGC 59.971 55.0 11.12 1.62 0.0 2.97 F
40 41 0.028505 CAGTTGCGCACATGATAGCC 59.971 55.0 11.12 0.00 0.0 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1824 2002 0.029167 TGCACTGTCGCACACATTTG 59.971 50.000 1.65 0.00 36.86 2.32 R
2039 2217 1.078823 TGGATATCACCGGGCTAGGAT 59.921 52.381 6.32 3.23 34.73 3.24 R
2489 2695 0.174389 AGCAAGTCGATCGTCATGCT 59.826 50.000 29.82 29.82 39.16 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.868622 TGTAAACAACTTAATTTGTGCCAGT 58.131 32.000 11.48 0.00 39.70 4.00
25 26 7.324178 TGTAAACAACTTAATTTGTGCCAGTT 58.676 30.769 11.48 5.22 39.70 3.16
26 27 6.660887 AAACAACTTAATTTGTGCCAGTTG 57.339 33.333 11.48 8.46 46.50 3.16
27 28 4.119136 ACAACTTAATTTGTGCCAGTTGC 58.881 39.130 10.12 0.00 45.48 4.17
28 29 3.011949 ACTTAATTTGTGCCAGTTGCG 57.988 42.857 0.00 0.00 45.60 4.85
35 36 2.594013 TGCCAGTTGCGCACATGA 60.594 55.556 11.12 0.00 45.60 3.07
36 37 1.972752 TGCCAGTTGCGCACATGAT 60.973 52.632 11.12 0.00 45.60 2.45
37 38 0.676151 TGCCAGTTGCGCACATGATA 60.676 50.000 11.12 1.30 45.60 2.15
38 39 0.028505 GCCAGTTGCGCACATGATAG 59.971 55.000 11.12 0.32 0.00 2.08
39 40 0.028505 CCAGTTGCGCACATGATAGC 59.971 55.000 11.12 1.62 0.00 2.97
40 41 0.028505 CAGTTGCGCACATGATAGCC 59.971 55.000 11.12 0.00 0.00 3.93
41 42 1.097547 AGTTGCGCACATGATAGCCC 61.098 55.000 11.12 0.00 0.00 5.19
42 43 1.077858 TTGCGCACATGATAGCCCA 60.078 52.632 11.12 0.00 0.00 5.36
43 44 0.679321 TTGCGCACATGATAGCCCAA 60.679 50.000 11.12 2.72 0.00 4.12
44 45 1.356624 GCGCACATGATAGCCCAAC 59.643 57.895 0.30 0.00 0.00 3.77
45 46 1.097547 GCGCACATGATAGCCCAACT 61.098 55.000 0.30 0.00 0.00 3.16
46 47 1.810031 GCGCACATGATAGCCCAACTA 60.810 52.381 0.30 0.00 34.64 2.24
47 48 2.560504 CGCACATGATAGCCCAACTAA 58.439 47.619 0.00 0.00 33.57 2.24
48 49 2.545526 CGCACATGATAGCCCAACTAAG 59.454 50.000 0.00 0.00 33.57 2.18
49 50 2.880890 GCACATGATAGCCCAACTAAGG 59.119 50.000 0.00 0.00 33.57 2.69
50 51 3.685550 GCACATGATAGCCCAACTAAGGT 60.686 47.826 0.00 0.00 33.57 3.50
51 52 4.526970 CACATGATAGCCCAACTAAGGTT 58.473 43.478 0.00 0.00 33.57 3.50
63 64 5.385509 CAACTAAGGTTGGTTGTAATGGG 57.614 43.478 10.01 0.00 46.37 4.00
64 65 4.734843 ACTAAGGTTGGTTGTAATGGGT 57.265 40.909 0.00 0.00 0.00 4.51
65 66 5.846528 ACTAAGGTTGGTTGTAATGGGTA 57.153 39.130 0.00 0.00 0.00 3.69
66 67 5.812286 ACTAAGGTTGGTTGTAATGGGTAG 58.188 41.667 0.00 0.00 0.00 3.18
67 68 4.734843 AAGGTTGGTTGTAATGGGTAGT 57.265 40.909 0.00 0.00 0.00 2.73
68 69 5.846528 AAGGTTGGTTGTAATGGGTAGTA 57.153 39.130 0.00 0.00 0.00 1.82
69 70 6.397217 AAGGTTGGTTGTAATGGGTAGTAT 57.603 37.500 0.00 0.00 0.00 2.12
70 71 5.997843 AGGTTGGTTGTAATGGGTAGTATC 58.002 41.667 0.00 0.00 0.00 2.24
71 72 5.489637 AGGTTGGTTGTAATGGGTAGTATCA 59.510 40.000 0.00 0.00 0.00 2.15
72 73 6.159751 AGGTTGGTTGTAATGGGTAGTATCAT 59.840 38.462 0.00 0.00 0.00 2.45
73 74 7.348801 AGGTTGGTTGTAATGGGTAGTATCATA 59.651 37.037 0.00 0.00 0.00 2.15
74 75 7.994334 GGTTGGTTGTAATGGGTAGTATCATAA 59.006 37.037 0.00 0.00 0.00 1.90
75 76 9.052759 GTTGGTTGTAATGGGTAGTATCATAAG 57.947 37.037 0.00 0.00 0.00 1.73
76 77 8.326765 TGGTTGTAATGGGTAGTATCATAAGT 57.673 34.615 0.00 0.00 0.00 2.24
77 78 8.774183 TGGTTGTAATGGGTAGTATCATAAGTT 58.226 33.333 0.00 0.00 0.00 2.66
87 88 9.804758 GGGTAGTATCATAAGTTAGTATCATGC 57.195 37.037 0.00 0.00 0.00 4.06
116 117 9.908747 ATGATACTAGTGTATGATACTACCTCC 57.091 37.037 5.39 0.00 39.29 4.30
117 118 8.327271 TGATACTAGTGTATGATACTACCTCCC 58.673 40.741 5.39 0.00 39.29 4.30
118 119 6.783517 ACTAGTGTATGATACTACCTCCCT 57.216 41.667 4.03 0.00 0.00 4.20
119 120 7.885209 ACTAGTGTATGATACTACCTCCCTA 57.115 40.000 4.03 0.00 0.00 3.53
120 121 8.285350 ACTAGTGTATGATACTACCTCCCTAA 57.715 38.462 4.03 0.00 0.00 2.69
121 122 8.902881 ACTAGTGTATGATACTACCTCCCTAAT 58.097 37.037 4.03 0.00 0.00 1.73
122 123 9.179909 CTAGTGTATGATACTACCTCCCTAATG 57.820 40.741 4.03 0.00 0.00 1.90
123 124 6.437793 AGTGTATGATACTACCTCCCTAATGC 59.562 42.308 4.03 0.00 0.00 3.56
124 125 6.210784 GTGTATGATACTACCTCCCTAATGCA 59.789 42.308 4.03 0.00 0.00 3.96
125 126 6.959954 TGTATGATACTACCTCCCTAATGCAT 59.040 38.462 4.03 0.00 0.00 3.96
126 127 8.119891 TGTATGATACTACCTCCCTAATGCATA 58.880 37.037 0.00 0.00 0.00 3.14
127 128 7.667575 ATGATACTACCTCCCTAATGCATAG 57.332 40.000 0.00 0.00 0.00 2.23
128 129 6.562228 TGATACTACCTCCCTAATGCATAGT 58.438 40.000 0.00 0.00 0.00 2.12
129 130 7.705700 TGATACTACCTCCCTAATGCATAGTA 58.294 38.462 0.00 0.81 0.00 1.82
130 131 8.344546 TGATACTACCTCCCTAATGCATAGTAT 58.655 37.037 11.08 11.08 37.18 2.12
131 132 8.770010 ATACTACCTCCCTAATGCATAGTATC 57.230 38.462 0.00 0.00 31.76 2.24
132 133 6.562228 ACTACCTCCCTAATGCATAGTATCA 58.438 40.000 0.00 0.00 0.00 2.15
133 134 7.192628 ACTACCTCCCTAATGCATAGTATCAT 58.807 38.462 0.00 0.00 0.00 2.45
134 135 8.344546 ACTACCTCCCTAATGCATAGTATCATA 58.655 37.037 0.00 0.00 0.00 2.15
135 136 9.373450 CTACCTCCCTAATGCATAGTATCATAT 57.627 37.037 0.00 0.00 0.00 1.78
136 137 8.027524 ACCTCCCTAATGCATAGTATCATATG 57.972 38.462 0.00 0.00 36.43 1.78
137 138 7.071698 ACCTCCCTAATGCATAGTATCATATGG 59.928 40.741 0.00 0.00 34.35 2.74
138 139 7.071698 CCTCCCTAATGCATAGTATCATATGGT 59.928 40.741 0.00 0.00 34.35 3.55
139 140 9.147732 CTCCCTAATGCATAGTATCATATGGTA 57.852 37.037 0.00 0.00 34.35 3.25
140 141 9.147732 TCCCTAATGCATAGTATCATATGGTAG 57.852 37.037 0.00 0.00 34.35 3.18
141 142 8.928448 CCCTAATGCATAGTATCATATGGTAGT 58.072 37.037 8.39 8.39 34.35 2.73
173 174 9.961265 AGATGACTTTATTTATTGTCATGCATG 57.039 29.630 21.07 21.07 46.22 4.06
174 175 9.955208 GATGACTTTATTTATTGTCATGCATGA 57.045 29.630 25.42 25.42 46.22 3.07
206 207 9.856488 ACTAGTGTAGCATTTATTATGATACGG 57.144 33.333 0.00 2.94 42.05 4.02
207 208 9.856488 CTAGTGTAGCATTTATTATGATACGGT 57.144 33.333 8.18 0.00 42.05 4.83
233 234 7.862274 TCATGATATGATACTCAACCCTCTT 57.138 36.000 0.00 0.00 33.59 2.85
234 235 8.267620 TCATGATATGATACTCAACCCTCTTT 57.732 34.615 0.00 0.00 33.59 2.52
235 236 8.717717 TCATGATATGATACTCAACCCTCTTTT 58.282 33.333 0.00 0.00 33.59 2.27
238 239 9.213777 TGATATGATACTCAACCCTCTTTTACT 57.786 33.333 0.00 0.00 0.00 2.24
241 242 7.311092 TGATACTCAACCCTCTTTTACTTCA 57.689 36.000 0.00 0.00 0.00 3.02
242 243 7.918076 TGATACTCAACCCTCTTTTACTTCAT 58.082 34.615 0.00 0.00 0.00 2.57
243 244 8.383175 TGATACTCAACCCTCTTTTACTTCATT 58.617 33.333 0.00 0.00 0.00 2.57
244 245 9.232473 GATACTCAACCCTCTTTTACTTCATTT 57.768 33.333 0.00 0.00 0.00 2.32
246 247 8.990163 ACTCAACCCTCTTTTACTTCATTTAA 57.010 30.769 0.00 0.00 0.00 1.52
247 248 9.588096 ACTCAACCCTCTTTTACTTCATTTAAT 57.412 29.630 0.00 0.00 0.00 1.40
259 260 9.474313 TTTACTTCATTTAATTCTATGCCACCT 57.526 29.630 0.00 0.00 0.00 4.00
260 261 7.573968 ACTTCATTTAATTCTATGCCACCTC 57.426 36.000 0.00 0.00 0.00 3.85
261 262 7.118723 ACTTCATTTAATTCTATGCCACCTCA 58.881 34.615 0.00 0.00 0.00 3.86
262 263 7.781693 ACTTCATTTAATTCTATGCCACCTCAT 59.218 33.333 0.00 0.00 0.00 2.90
263 264 7.750229 TCATTTAATTCTATGCCACCTCATC 57.250 36.000 0.00 0.00 0.00 2.92
264 265 7.289310 TCATTTAATTCTATGCCACCTCATCA 58.711 34.615 0.00 0.00 0.00 3.07
265 266 7.779326 TCATTTAATTCTATGCCACCTCATCAA 59.221 33.333 0.00 0.00 0.00 2.57
266 267 7.953005 TTTAATTCTATGCCACCTCATCAAA 57.047 32.000 0.00 0.00 0.00 2.69
267 268 7.572523 TTAATTCTATGCCACCTCATCAAAG 57.427 36.000 0.00 0.00 0.00 2.77
268 269 4.574674 TTCTATGCCACCTCATCAAAGT 57.425 40.909 0.00 0.00 0.00 2.66
269 270 4.574674 TCTATGCCACCTCATCAAAGTT 57.425 40.909 0.00 0.00 0.00 2.66
270 271 4.264253 TCTATGCCACCTCATCAAAGTTG 58.736 43.478 0.00 0.00 0.00 3.16
271 272 0.961019 TGCCACCTCATCAAAGTTGC 59.039 50.000 0.00 0.00 0.00 4.17
272 273 0.244721 GCCACCTCATCAAAGTTGCC 59.755 55.000 0.00 0.00 0.00 4.52
273 274 1.915141 CCACCTCATCAAAGTTGCCT 58.085 50.000 0.00 0.00 0.00 4.75
274 275 2.879756 GCCACCTCATCAAAGTTGCCTA 60.880 50.000 0.00 0.00 0.00 3.93
275 276 3.012518 CCACCTCATCAAAGTTGCCTAG 58.987 50.000 0.00 0.00 0.00 3.02
276 277 3.560025 CCACCTCATCAAAGTTGCCTAGT 60.560 47.826 0.00 0.00 0.00 2.57
277 278 4.074970 CACCTCATCAAAGTTGCCTAGTT 58.925 43.478 0.00 0.00 0.00 2.24
278 279 4.074970 ACCTCATCAAAGTTGCCTAGTTG 58.925 43.478 0.00 0.00 0.00 3.16
279 280 3.441572 CCTCATCAAAGTTGCCTAGTTGG 59.558 47.826 0.00 0.00 39.35 3.77
292 293 3.748083 CCTAGTTGGCATGCATGATACT 58.252 45.455 30.64 26.11 0.00 2.12
293 294 4.898320 CCTAGTTGGCATGCATGATACTA 58.102 43.478 30.64 25.87 0.00 1.82
294 295 4.934001 CCTAGTTGGCATGCATGATACTAG 59.066 45.833 31.40 31.40 36.03 2.57
295 296 3.144506 AGTTGGCATGCATGATACTAGC 58.855 45.455 30.64 12.56 0.00 3.42
296 297 3.144506 GTTGGCATGCATGATACTAGCT 58.855 45.455 30.64 0.00 0.00 3.32
297 298 4.040829 AGTTGGCATGCATGATACTAGCTA 59.959 41.667 30.64 7.90 0.00 3.32
298 299 4.831674 TGGCATGCATGATACTAGCTAT 57.168 40.909 30.64 0.00 0.00 2.97
299 300 4.510571 TGGCATGCATGATACTAGCTATG 58.489 43.478 30.64 0.23 0.00 2.23
300 301 4.223477 TGGCATGCATGATACTAGCTATGA 59.777 41.667 30.64 0.00 0.00 2.15
301 302 5.104652 TGGCATGCATGATACTAGCTATGAT 60.105 40.000 30.64 0.00 0.00 2.45
302 303 6.098695 TGGCATGCATGATACTAGCTATGATA 59.901 38.462 30.64 0.00 0.00 2.15
303 304 6.423302 GGCATGCATGATACTAGCTATGATAC 59.577 42.308 30.64 5.71 0.00 2.24
304 305 7.208777 GCATGCATGATACTAGCTATGATACT 58.791 38.462 30.64 0.00 0.00 2.12
305 306 7.381948 GCATGCATGATACTAGCTATGATACTC 59.618 40.741 30.64 1.38 0.00 2.59
306 307 7.340122 TGCATGATACTAGCTATGATACTCC 57.660 40.000 0.00 0.00 0.00 3.85
307 308 6.322456 TGCATGATACTAGCTATGATACTCCC 59.678 42.308 0.00 0.00 0.00 4.30
308 309 6.322456 GCATGATACTAGCTATGATACTCCCA 59.678 42.308 0.00 0.00 0.00 4.37
309 310 7.015098 GCATGATACTAGCTATGATACTCCCAT 59.985 40.741 0.00 0.00 0.00 4.00
310 311 8.922237 CATGATACTAGCTATGATACTCCCATT 58.078 37.037 0.00 0.00 0.00 3.16
312 313 9.409918 TGATACTAGCTATGATACTCCCATTAC 57.590 37.037 0.00 0.00 0.00 1.89
313 314 9.409918 GATACTAGCTATGATACTCCCATTACA 57.590 37.037 0.00 0.00 0.00 2.41
314 315 9.769677 ATACTAGCTATGATACTCCCATTACAA 57.230 33.333 0.00 0.00 0.00 2.41
315 316 7.897864 ACTAGCTATGATACTCCCATTACAAC 58.102 38.462 0.00 0.00 0.00 3.32
316 317 6.115448 AGCTATGATACTCCCATTACAACC 57.885 41.667 0.00 0.00 0.00 3.77
317 318 5.606749 AGCTATGATACTCCCATTACAACCA 59.393 40.000 0.00 0.00 0.00 3.67
318 319 5.934625 GCTATGATACTCCCATTACAACCAG 59.065 44.000 0.00 0.00 0.00 4.00
319 320 4.150897 TGATACTCCCATTACAACCAGC 57.849 45.455 0.00 0.00 0.00 4.85
320 321 3.118038 TGATACTCCCATTACAACCAGCC 60.118 47.826 0.00 0.00 0.00 4.85
321 322 1.372501 ACTCCCATTACAACCAGCCT 58.627 50.000 0.00 0.00 0.00 4.58
322 323 2.557869 ACTCCCATTACAACCAGCCTA 58.442 47.619 0.00 0.00 0.00 3.93
323 324 2.916934 ACTCCCATTACAACCAGCCTAA 59.083 45.455 0.00 0.00 0.00 2.69
324 325 3.054361 ACTCCCATTACAACCAGCCTAAG 60.054 47.826 0.00 0.00 0.00 2.18
325 326 3.186283 TCCCATTACAACCAGCCTAAGA 58.814 45.455 0.00 0.00 0.00 2.10
326 327 3.589735 TCCCATTACAACCAGCCTAAGAA 59.410 43.478 0.00 0.00 0.00 2.52
327 328 4.043561 TCCCATTACAACCAGCCTAAGAAA 59.956 41.667 0.00 0.00 0.00 2.52
328 329 4.956075 CCCATTACAACCAGCCTAAGAAAT 59.044 41.667 0.00 0.00 0.00 2.17
329 330 6.069323 TCCCATTACAACCAGCCTAAGAAATA 60.069 38.462 0.00 0.00 0.00 1.40
330 331 6.605594 CCCATTACAACCAGCCTAAGAAATAA 59.394 38.462 0.00 0.00 0.00 1.40
331 332 7.201821 CCCATTACAACCAGCCTAAGAAATAAG 60.202 40.741 0.00 0.00 0.00 1.73
332 333 7.556275 CCATTACAACCAGCCTAAGAAATAAGA 59.444 37.037 0.00 0.00 0.00 2.10
333 334 8.956426 CATTACAACCAGCCTAAGAAATAAGAA 58.044 33.333 0.00 0.00 0.00 2.52
334 335 9.700831 ATTACAACCAGCCTAAGAAATAAGAAT 57.299 29.630 0.00 0.00 0.00 2.40
335 336 7.396540 ACAACCAGCCTAAGAAATAAGAATG 57.603 36.000 0.00 0.00 0.00 2.67
336 337 6.948309 ACAACCAGCCTAAGAAATAAGAATGT 59.052 34.615 0.00 0.00 0.00 2.71
337 338 8.107095 ACAACCAGCCTAAGAAATAAGAATGTA 58.893 33.333 0.00 0.00 0.00 2.29
338 339 9.125026 CAACCAGCCTAAGAAATAAGAATGTAT 57.875 33.333 0.00 0.00 0.00 2.29
339 340 9.700831 AACCAGCCTAAGAAATAAGAATGTATT 57.299 29.630 0.00 0.00 0.00 1.89
398 399 5.473066 ACTTTATCAATAATGCCATGCCC 57.527 39.130 0.00 0.00 0.00 5.36
399 400 5.149976 ACTTTATCAATAATGCCATGCCCT 58.850 37.500 0.00 0.00 0.00 5.19
400 401 6.314120 ACTTTATCAATAATGCCATGCCCTA 58.686 36.000 0.00 0.00 0.00 3.53
401 402 6.955851 ACTTTATCAATAATGCCATGCCCTAT 59.044 34.615 0.00 0.00 0.00 2.57
402 403 7.455638 ACTTTATCAATAATGCCATGCCCTATT 59.544 33.333 0.00 0.00 0.00 1.73
403 404 7.795534 TTATCAATAATGCCATGCCCTATTT 57.204 32.000 0.00 0.00 0.00 1.40
404 405 8.891985 TTATCAATAATGCCATGCCCTATTTA 57.108 30.769 0.00 0.00 0.00 1.40
405 406 6.839124 TCAATAATGCCATGCCCTATTTAG 57.161 37.500 0.00 0.00 0.00 1.85
406 407 5.716228 TCAATAATGCCATGCCCTATTTAGG 59.284 40.000 0.00 0.00 43.25 2.69
407 408 3.901570 AATGCCATGCCCTATTTAGGA 57.098 42.857 5.16 0.00 46.63 2.94
408 409 2.957402 TGCCATGCCCTATTTAGGAG 57.043 50.000 5.16 0.00 46.63 3.69
409 410 2.417652 TGCCATGCCCTATTTAGGAGA 58.582 47.619 5.16 0.00 46.63 3.71
410 411 2.782925 TGCCATGCCCTATTTAGGAGAA 59.217 45.455 5.16 0.00 46.63 2.87
411 412 3.204158 TGCCATGCCCTATTTAGGAGAAA 59.796 43.478 5.16 0.00 46.63 2.52
412 413 4.215109 GCCATGCCCTATTTAGGAGAAAA 58.785 43.478 5.16 0.00 46.63 2.29
413 414 4.279420 GCCATGCCCTATTTAGGAGAAAAG 59.721 45.833 5.16 0.00 46.63 2.27
414 415 5.449553 CCATGCCCTATTTAGGAGAAAAGT 58.550 41.667 5.16 0.00 46.63 2.66
415 416 5.893824 CCATGCCCTATTTAGGAGAAAAGTT 59.106 40.000 5.16 0.00 46.63 2.66
416 417 6.183360 CCATGCCCTATTTAGGAGAAAAGTTG 60.183 42.308 5.16 0.00 46.63 3.16
417 418 4.705023 TGCCCTATTTAGGAGAAAAGTTGC 59.295 41.667 5.16 0.00 46.63 4.17
418 419 4.705023 GCCCTATTTAGGAGAAAAGTTGCA 59.295 41.667 5.16 0.00 46.63 4.08
419 420 5.393135 GCCCTATTTAGGAGAAAAGTTGCAC 60.393 44.000 5.16 0.00 46.63 4.57
420 421 5.163754 CCCTATTTAGGAGAAAAGTTGCACG 60.164 44.000 5.16 0.00 46.63 5.34
421 422 5.411669 CCTATTTAGGAGAAAAGTTGCACGT 59.588 40.000 0.00 0.00 46.63 4.49
422 423 4.806342 TTTAGGAGAAAAGTTGCACGTC 57.194 40.909 0.00 0.00 0.00 4.34
423 424 1.217882 AGGAGAAAAGTTGCACGTCG 58.782 50.000 0.00 0.00 0.00 5.12
424 425 0.935196 GGAGAAAAGTTGCACGTCGT 59.065 50.000 0.00 0.00 0.00 4.34
425 426 1.332904 GGAGAAAAGTTGCACGTCGTG 60.333 52.381 21.02 21.02 36.51 4.35
426 427 1.326548 GAGAAAAGTTGCACGTCGTGT 59.673 47.619 25.18 4.67 35.75 4.49
436 437 0.636733 CACGTCGTGTGGTAATACGC 59.363 55.000 17.30 0.00 45.21 4.42
437 438 0.523072 ACGTCGTGTGGTAATACGCT 59.477 50.000 0.00 0.00 40.38 5.07
438 439 1.068333 ACGTCGTGTGGTAATACGCTT 60.068 47.619 0.00 0.00 40.38 4.68
439 440 1.987770 CGTCGTGTGGTAATACGCTTT 59.012 47.619 0.00 0.00 40.38 3.51
440 441 2.027214 CGTCGTGTGGTAATACGCTTTC 59.973 50.000 0.00 0.00 40.38 2.62
441 442 3.248266 GTCGTGTGGTAATACGCTTTCT 58.752 45.455 0.00 0.00 40.38 2.52
442 443 3.302699 GTCGTGTGGTAATACGCTTTCTC 59.697 47.826 0.00 0.00 40.38 2.87
443 444 3.192001 TCGTGTGGTAATACGCTTTCTCT 59.808 43.478 0.00 0.00 40.38 3.10
444 445 3.546670 CGTGTGGTAATACGCTTTCTCTC 59.453 47.826 0.00 0.00 34.05 3.20
445 446 4.674623 CGTGTGGTAATACGCTTTCTCTCT 60.675 45.833 0.00 0.00 34.05 3.10
446 447 4.799428 GTGTGGTAATACGCTTTCTCTCTC 59.201 45.833 0.00 0.00 0.00 3.20
447 448 4.142227 TGTGGTAATACGCTTTCTCTCTCC 60.142 45.833 0.00 0.00 0.00 3.71
448 449 4.021229 TGGTAATACGCTTTCTCTCTCCA 58.979 43.478 0.00 0.00 0.00 3.86
449 450 4.142227 TGGTAATACGCTTTCTCTCTCCAC 60.142 45.833 0.00 0.00 0.00 4.02
450 451 4.098196 GGTAATACGCTTTCTCTCTCCACT 59.902 45.833 0.00 0.00 0.00 4.00
451 452 4.810191 AATACGCTTTCTCTCTCCACTT 57.190 40.909 0.00 0.00 0.00 3.16
452 453 2.734276 ACGCTTTCTCTCTCCACTTC 57.266 50.000 0.00 0.00 0.00 3.01
453 454 1.068194 ACGCTTTCTCTCTCCACTTCG 60.068 52.381 0.00 0.00 0.00 3.79
454 455 1.355005 GCTTTCTCTCTCCACTTCGC 58.645 55.000 0.00 0.00 0.00 4.70
455 456 1.067213 GCTTTCTCTCTCCACTTCGCT 60.067 52.381 0.00 0.00 0.00 4.93
456 457 2.164624 GCTTTCTCTCTCCACTTCGCTA 59.835 50.000 0.00 0.00 0.00 4.26
457 458 3.181480 GCTTTCTCTCTCCACTTCGCTAT 60.181 47.826 0.00 0.00 0.00 2.97
458 459 4.036971 GCTTTCTCTCTCCACTTCGCTATA 59.963 45.833 0.00 0.00 0.00 1.31
459 460 5.450688 GCTTTCTCTCTCCACTTCGCTATAA 60.451 44.000 0.00 0.00 0.00 0.98
460 461 5.502153 TTCTCTCTCCACTTCGCTATAAC 57.498 43.478 0.00 0.00 0.00 1.89
461 462 3.884091 TCTCTCTCCACTTCGCTATAACC 59.116 47.826 0.00 0.00 0.00 2.85
462 463 3.628008 TCTCTCCACTTCGCTATAACCA 58.372 45.455 0.00 0.00 0.00 3.67
463 464 4.215908 TCTCTCCACTTCGCTATAACCAT 58.784 43.478 0.00 0.00 0.00 3.55
464 465 4.278669 TCTCTCCACTTCGCTATAACCATC 59.721 45.833 0.00 0.00 0.00 3.51
465 466 3.958147 TCTCCACTTCGCTATAACCATCA 59.042 43.478 0.00 0.00 0.00 3.07
466 467 4.051922 CTCCACTTCGCTATAACCATCAC 58.948 47.826 0.00 0.00 0.00 3.06
467 468 3.131396 CCACTTCGCTATAACCATCACC 58.869 50.000 0.00 0.00 0.00 4.02
468 469 2.794910 CACTTCGCTATAACCATCACCG 59.205 50.000 0.00 0.00 0.00 4.94
469 470 2.223971 ACTTCGCTATAACCATCACCGG 60.224 50.000 0.00 0.00 0.00 5.28
470 471 1.405872 TCGCTATAACCATCACCGGT 58.594 50.000 0.00 0.00 42.71 5.28
485 486 3.780624 CGGTTTCGGAGGAATCCAT 57.219 52.632 0.61 0.00 40.56 3.41
486 487 2.038387 CGGTTTCGGAGGAATCCATT 57.962 50.000 0.61 0.00 40.56 3.16
487 488 2.365582 CGGTTTCGGAGGAATCCATTT 58.634 47.619 0.61 0.00 40.56 2.32
488 489 2.354821 CGGTTTCGGAGGAATCCATTTC 59.645 50.000 0.61 0.00 40.56 2.17
489 490 3.352648 GGTTTCGGAGGAATCCATTTCA 58.647 45.455 0.61 0.00 40.36 2.69
490 491 3.761752 GGTTTCGGAGGAATCCATTTCAA 59.238 43.478 0.61 0.00 40.36 2.69
491 492 4.219725 GGTTTCGGAGGAATCCATTTCAAA 59.780 41.667 0.61 0.00 40.36 2.69
492 493 5.279256 GGTTTCGGAGGAATCCATTTCAAAA 60.279 40.000 0.61 0.00 40.36 2.44
493 494 6.398095 GTTTCGGAGGAATCCATTTCAAAAT 58.602 36.000 0.61 0.00 35.94 1.82
494 495 5.581126 TCGGAGGAATCCATTTCAAAATG 57.419 39.130 0.61 8.23 44.12 2.32
495 496 5.016173 TCGGAGGAATCCATTTCAAAATGT 58.984 37.500 12.99 0.00 43.24 2.71
496 497 5.480073 TCGGAGGAATCCATTTCAAAATGTT 59.520 36.000 12.99 3.62 43.24 2.71
497 498 6.661377 TCGGAGGAATCCATTTCAAAATGTTA 59.339 34.615 12.99 3.36 43.24 2.41
498 499 7.341769 TCGGAGGAATCCATTTCAAAATGTTAT 59.658 33.333 12.99 5.19 43.24 1.89
499 500 7.436080 CGGAGGAATCCATTTCAAAATGTTATG 59.564 37.037 12.99 0.47 43.24 1.90
500 501 8.260114 GGAGGAATCCATTTCAAAATGTTATGT 58.740 33.333 12.99 0.00 43.24 2.29
501 502 9.305925 GAGGAATCCATTTCAAAATGTTATGTC 57.694 33.333 12.99 4.80 43.24 3.06
502 503 8.260114 AGGAATCCATTTCAAAATGTTATGTCC 58.740 33.333 12.99 11.32 43.24 4.02
503 504 8.040132 GGAATCCATTTCAAAATGTTATGTCCA 58.960 33.333 12.99 0.00 43.24 4.02
504 505 9.603921 GAATCCATTTCAAAATGTTATGTCCAT 57.396 29.630 12.99 0.00 43.24 3.41
505 506 8.951787 ATCCATTTCAAAATGTTATGTCCATG 57.048 30.769 12.99 0.00 43.24 3.66
506 507 7.329499 TCCATTTCAAAATGTTATGTCCATGG 58.671 34.615 4.97 4.97 43.24 3.66
507 508 7.179872 TCCATTTCAAAATGTTATGTCCATGGA 59.820 33.333 11.44 11.44 43.24 3.41
508 509 7.823310 CCATTTCAAAATGTTATGTCCATGGAA 59.177 33.333 18.20 7.57 43.24 3.53
509 510 8.875803 CATTTCAAAATGTTATGTCCATGGAAG 58.124 33.333 18.20 0.00 40.61 3.46
510 511 7.773489 TTCAAAATGTTATGTCCATGGAAGA 57.227 32.000 18.20 6.60 0.00 2.87
511 512 7.773489 TCAAAATGTTATGTCCATGGAAGAA 57.227 32.000 18.20 8.09 0.00 2.52
512 513 8.187913 TCAAAATGTTATGTCCATGGAAGAAA 57.812 30.769 18.20 7.91 0.00 2.52
513 514 8.646004 TCAAAATGTTATGTCCATGGAAGAAAA 58.354 29.630 18.20 6.44 0.00 2.29
514 515 8.711457 CAAAATGTTATGTCCATGGAAGAAAAC 58.289 33.333 18.20 17.68 0.00 2.43
515 516 7.781324 AATGTTATGTCCATGGAAGAAAACT 57.219 32.000 18.20 6.39 0.00 2.66
516 517 7.781324 ATGTTATGTCCATGGAAGAAAACTT 57.219 32.000 18.20 13.13 0.00 2.66
517 518 7.595819 TGTTATGTCCATGGAAGAAAACTTT 57.404 32.000 18.20 0.00 0.00 2.66
518 519 7.432869 TGTTATGTCCATGGAAGAAAACTTTG 58.567 34.615 18.20 0.00 0.00 2.77
519 520 4.935352 TGTCCATGGAAGAAAACTTTGG 57.065 40.909 18.20 0.00 0.00 3.28
520 521 4.541705 TGTCCATGGAAGAAAACTTTGGA 58.458 39.130 18.20 0.00 0.00 3.53
521 522 4.584325 TGTCCATGGAAGAAAACTTTGGAG 59.416 41.667 18.20 0.00 32.74 3.86
522 523 4.827284 GTCCATGGAAGAAAACTTTGGAGA 59.173 41.667 18.20 0.00 32.74 3.71
523 524 5.478332 GTCCATGGAAGAAAACTTTGGAGAT 59.522 40.000 18.20 0.00 32.74 2.75
524 525 6.659242 GTCCATGGAAGAAAACTTTGGAGATA 59.341 38.462 18.20 0.00 32.74 1.98
525 526 7.176690 GTCCATGGAAGAAAACTTTGGAGATAA 59.823 37.037 18.20 0.00 32.74 1.75
526 527 7.895429 TCCATGGAAGAAAACTTTGGAGATAAT 59.105 33.333 13.46 0.00 0.00 1.28
527 528 9.189156 CCATGGAAGAAAACTTTGGAGATAATA 57.811 33.333 5.56 0.00 0.00 0.98
530 531 9.672673 TGGAAGAAAACTTTGGAGATAATAGAG 57.327 33.333 0.00 0.00 0.00 2.43
531 532 9.114952 GGAAGAAAACTTTGGAGATAATAGAGG 57.885 37.037 0.00 0.00 0.00 3.69
532 533 9.674068 GAAGAAAACTTTGGAGATAATAGAGGT 57.326 33.333 0.00 0.00 0.00 3.85
737 740 0.037447 AGGACAAAAGAGGGCAGCTC 59.963 55.000 0.00 0.00 0.00 4.09
768 771 5.392767 TCTTGAGATGTGTGAAGACTACC 57.607 43.478 0.00 0.00 0.00 3.18
837 840 2.240667 CCACCATCCTCCAGTTCATTCT 59.759 50.000 0.00 0.00 0.00 2.40
844 847 2.843113 CCTCCAGTTCATTCTTCTCCCT 59.157 50.000 0.00 0.00 0.00 4.20
847 850 5.422214 TCCAGTTCATTCTTCTCCCTAAC 57.578 43.478 0.00 0.00 0.00 2.34
868 871 0.607489 CTGCTGCAGGTAGTTTGCCT 60.607 55.000 21.71 0.00 40.81 4.75
869 872 0.178992 TGCTGCAGGTAGTTTGCCTT 60.179 50.000 17.12 0.00 40.81 4.35
870 873 0.242017 GCTGCAGGTAGTTTGCCTTG 59.758 55.000 17.12 0.00 40.81 3.61
871 874 0.242017 CTGCAGGTAGTTTGCCTTGC 59.758 55.000 5.57 0.00 40.81 4.01
872 875 1.178534 TGCAGGTAGTTTGCCTTGCC 61.179 55.000 0.00 0.00 40.81 4.52
1005 1008 4.799715 ATACCCGTTAATTTCCATGGGA 57.200 40.909 13.02 0.00 41.37 4.37
1131 1140 3.552273 CCCAGCACACGTATGTATCCTAC 60.552 52.174 0.00 0.00 36.72 3.18
1273 1295 3.130340 GGAGGATTTTTGTGTGTGTGTGT 59.870 43.478 0.00 0.00 0.00 3.72
1274 1296 4.104776 GAGGATTTTTGTGTGTGTGTGTG 58.895 43.478 0.00 0.00 0.00 3.82
1318 1340 4.100529 GACACAGCATATCACAAACATGC 58.899 43.478 0.00 0.00 44.29 4.06
1408 1436 4.004196 TCTGCATCATCATCTAGCTTGG 57.996 45.455 0.00 0.00 0.00 3.61
1438 1607 2.220653 ACCATACAATGCCAGCAGTT 57.779 45.000 0.00 0.00 0.00 3.16
1439 1608 3.364460 ACCATACAATGCCAGCAGTTA 57.636 42.857 0.00 0.00 0.00 2.24
1440 1609 3.902218 ACCATACAATGCCAGCAGTTAT 58.098 40.909 0.00 0.00 0.00 1.89
1441 1610 5.047566 ACCATACAATGCCAGCAGTTATA 57.952 39.130 0.00 0.00 0.00 0.98
1477 1646 2.743664 CGTGCTTGGATTCATCTGAACA 59.256 45.455 0.00 0.00 36.80 3.18
1511 1680 2.368221 TGGCAATCCCCTTTTGAGTTTG 59.632 45.455 0.00 0.00 0.00 2.93
1683 1860 1.374947 CGGCCAAAGACCCAAGAGA 59.625 57.895 2.24 0.00 0.00 3.10
1684 1861 0.035056 CGGCCAAAGACCCAAGAGAT 60.035 55.000 2.24 0.00 0.00 2.75
1761 1939 6.789822 CTGTATAGACATCCAGCTAGTTCAGC 60.790 46.154 0.00 0.00 42.21 4.26
1803 1981 5.000591 TCGCCATTGTTCAGTTCTTTGATA 58.999 37.500 0.00 0.00 0.00 2.15
1824 2002 2.363788 TTCACGTGTCTACCATCTGC 57.636 50.000 16.51 0.00 0.00 4.26
1830 2008 3.002791 CGTGTCTACCATCTGCAAATGT 58.997 45.455 0.00 0.00 0.00 2.71
1854 2032 1.538276 GACAGTGCATGCAATAACGC 58.462 50.000 24.58 8.95 0.00 4.84
1856 2034 1.135603 ACAGTGCATGCAATAACGCAG 60.136 47.619 24.58 10.73 46.99 5.18
2208 2386 2.159462 GCCTATCAAGAAGCAGCAACAC 60.159 50.000 0.00 0.00 0.00 3.32
2409 2615 2.101125 GTGTGCGTATTTAAGCATGCG 58.899 47.619 13.01 0.00 45.69 4.73
2528 2734 3.309682 GCTAACAATAACATGCAGCTCGA 59.690 43.478 0.00 0.00 32.06 4.04
2583 2789 9.554395 TGTTAATGTAAGAGAGACAAATGACAA 57.446 29.630 0.00 0.00 0.00 3.18
2587 2793 8.853077 ATGTAAGAGAGACAAATGACAAATGA 57.147 30.769 0.00 0.00 0.00 2.57
2588 2794 8.675705 TGTAAGAGAGACAAATGACAAATGAA 57.324 30.769 0.00 0.00 0.00 2.57
2589 2795 8.559536 TGTAAGAGAGACAAATGACAAATGAAC 58.440 33.333 0.00 0.00 0.00 3.18
2598 2806 3.394674 TGACAAATGAACAGTAGCCGA 57.605 42.857 0.00 0.00 0.00 5.54
2647 2855 7.925043 TTTGTAAAGGAACAGTGTAAAGACA 57.075 32.000 0.00 0.00 0.00 3.41
2648 2856 7.925043 TTGTAAAGGAACAGTGTAAAGACAA 57.075 32.000 0.00 0.49 37.31 3.18
2650 2858 8.514330 TGTAAAGGAACAGTGTAAAGACAAAT 57.486 30.769 0.00 0.00 37.31 2.32
2651 2859 8.402472 TGTAAAGGAACAGTGTAAAGACAAATG 58.598 33.333 0.00 0.00 37.31 2.32
2652 2860 7.639113 AAAGGAACAGTGTAAAGACAAATGA 57.361 32.000 0.00 0.00 37.31 2.57
2653 2861 7.639113 AAGGAACAGTGTAAAGACAAATGAA 57.361 32.000 0.00 0.00 37.31 2.57
2655 2863 7.707104 AGGAACAGTGTAAAGACAAATGAAAG 58.293 34.615 0.00 0.00 37.31 2.62
2656 2864 6.918022 GGAACAGTGTAAAGACAAATGAAAGG 59.082 38.462 0.00 0.00 37.31 3.11
2657 2865 6.391227 ACAGTGTAAAGACAAATGAAAGGG 57.609 37.500 0.00 0.00 37.31 3.95
2658 2866 5.221244 ACAGTGTAAAGACAAATGAAAGGGC 60.221 40.000 0.00 0.00 37.31 5.19
2659 2867 5.010012 CAGTGTAAAGACAAATGAAAGGGCT 59.990 40.000 0.00 0.00 37.31 5.19
2660 2868 5.598417 AGTGTAAAGACAAATGAAAGGGCTT 59.402 36.000 0.00 0.00 37.31 4.35
2661 2869 6.775629 AGTGTAAAGACAAATGAAAGGGCTTA 59.224 34.615 0.00 0.00 37.31 3.09
2662 2870 7.286775 AGTGTAAAGACAAATGAAAGGGCTTAA 59.713 33.333 0.00 0.00 37.31 1.85
2663 2871 8.088365 GTGTAAAGACAAATGAAAGGGCTTAAT 58.912 33.333 0.00 0.00 37.31 1.40
2664 2872 8.646900 TGTAAAGACAAATGAAAGGGCTTAATT 58.353 29.630 0.00 0.00 30.68 1.40
2665 2873 7.967890 AAAGACAAATGAAAGGGCTTAATTG 57.032 32.000 0.00 0.00 0.00 2.32
2666 2874 6.041423 AGACAAATGAAAGGGCTTAATTGG 57.959 37.500 0.00 0.00 0.00 3.16
2667 2875 5.046376 AGACAAATGAAAGGGCTTAATTGGG 60.046 40.000 0.00 0.00 0.00 4.12
2668 2876 3.912496 AATGAAAGGGCTTAATTGGGC 57.088 42.857 0.00 0.00 0.00 5.36
2675 2883 3.730269 AGGGCTTAATTGGGCCAATTAA 58.270 40.909 40.85 40.85 46.95 1.40
2710 2918 6.887626 TTTTAGTCAAAAATACCTTCGGCT 57.112 33.333 0.00 0.00 32.05 5.52
2711 2919 6.887626 TTTAGTCAAAAATACCTTCGGCTT 57.112 33.333 0.00 0.00 0.00 4.35
2712 2920 6.887626 TTAGTCAAAAATACCTTCGGCTTT 57.112 33.333 0.00 0.00 0.00 3.51
2713 2921 7.982761 TTAGTCAAAAATACCTTCGGCTTTA 57.017 32.000 0.00 0.00 0.00 1.85
2714 2922 6.887626 AGTCAAAAATACCTTCGGCTTTAA 57.112 33.333 0.00 0.00 0.00 1.52
2715 2923 7.462571 AGTCAAAAATACCTTCGGCTTTAAT 57.537 32.000 0.00 0.00 0.00 1.40
2716 2924 8.570068 AGTCAAAAATACCTTCGGCTTTAATA 57.430 30.769 0.00 0.00 0.00 0.98
2717 2925 9.016438 AGTCAAAAATACCTTCGGCTTTAATAA 57.984 29.630 0.00 0.00 0.00 1.40
2718 2926 9.285770 GTCAAAAATACCTTCGGCTTTAATAAG 57.714 33.333 0.00 0.00 34.36 1.73
2719 2927 8.463607 TCAAAAATACCTTCGGCTTTAATAAGG 58.536 33.333 0.00 0.00 43.42 2.69
2730 2938 5.752892 GCTTTAATAAGGCCCAGTTAGTC 57.247 43.478 0.00 0.00 31.76 2.59
2731 2939 5.437946 GCTTTAATAAGGCCCAGTTAGTCT 58.562 41.667 0.00 0.00 31.76 3.24
2732 2940 5.886474 GCTTTAATAAGGCCCAGTTAGTCTT 59.114 40.000 0.00 0.00 31.76 3.01
2733 2941 7.052248 GCTTTAATAAGGCCCAGTTAGTCTTA 58.948 38.462 0.00 0.00 31.76 2.10
2734 2942 7.720074 GCTTTAATAAGGCCCAGTTAGTCTTAT 59.280 37.037 0.00 0.00 33.59 1.73
2735 2943 9.274206 CTTTAATAAGGCCCAGTTAGTCTTATC 57.726 37.037 0.00 0.00 31.73 1.75
2736 2944 8.562949 TTAATAAGGCCCAGTTAGTCTTATCT 57.437 34.615 0.00 0.00 31.73 1.98
2737 2945 4.762289 AAGGCCCAGTTAGTCTTATCTG 57.238 45.455 0.00 0.00 0.00 2.90
2738 2946 3.725634 AGGCCCAGTTAGTCTTATCTGT 58.274 45.455 0.00 0.00 0.00 3.41
2739 2947 4.104831 AGGCCCAGTTAGTCTTATCTGTT 58.895 43.478 0.00 0.00 0.00 3.16
2740 2948 4.080863 AGGCCCAGTTAGTCTTATCTGTTG 60.081 45.833 0.00 0.00 0.00 3.33
2741 2949 4.192317 GCCCAGTTAGTCTTATCTGTTGG 58.808 47.826 0.00 0.00 0.00 3.77
2742 2950 4.081087 GCCCAGTTAGTCTTATCTGTTGGA 60.081 45.833 0.00 0.00 0.00 3.53
2743 2951 5.396884 GCCCAGTTAGTCTTATCTGTTGGAT 60.397 44.000 0.00 0.00 38.38 3.41
2744 2952 6.284459 CCCAGTTAGTCTTATCTGTTGGATC 58.716 44.000 0.00 0.00 35.98 3.36
2745 2953 5.980116 CCAGTTAGTCTTATCTGTTGGATCG 59.020 44.000 0.00 0.00 35.98 3.69
2746 2954 5.460419 CAGTTAGTCTTATCTGTTGGATCGC 59.540 44.000 0.00 0.00 35.98 4.58
2747 2955 3.460857 AGTCTTATCTGTTGGATCGCC 57.539 47.619 0.00 0.00 35.98 5.54
2748 2956 2.766263 AGTCTTATCTGTTGGATCGCCA 59.234 45.455 0.00 0.00 44.17 5.69
2781 2989 7.930217 ACATATACTTTGGTGTATCACAATGC 58.070 34.615 2.41 0.00 35.86 3.56
2782 2990 7.555914 ACATATACTTTGGTGTATCACAATGCA 59.444 33.333 0.00 0.00 35.86 3.96
2783 2991 8.570488 CATATACTTTGGTGTATCACAATGCAT 58.430 33.333 0.00 0.00 35.86 3.96
2784 2992 5.314923 ACTTTGGTGTATCACAATGCATC 57.685 39.130 0.00 0.00 35.86 3.91
2785 2993 4.142622 ACTTTGGTGTATCACAATGCATCG 60.143 41.667 0.00 0.00 35.86 3.84
2786 2994 2.984562 TGGTGTATCACAATGCATCGT 58.015 42.857 0.00 0.00 35.86 3.73
2787 2995 4.130286 TGGTGTATCACAATGCATCGTA 57.870 40.909 0.00 0.00 35.86 3.43
2788 2996 4.508662 TGGTGTATCACAATGCATCGTAA 58.491 39.130 0.00 0.00 35.86 3.18
2789 2997 4.938226 TGGTGTATCACAATGCATCGTAAA 59.062 37.500 0.00 0.00 35.86 2.01
2790 2998 5.412904 TGGTGTATCACAATGCATCGTAAAA 59.587 36.000 0.00 0.00 35.86 1.52
2791 2999 6.094742 TGGTGTATCACAATGCATCGTAAAAT 59.905 34.615 0.00 0.00 35.86 1.82
2792 3000 6.972328 GGTGTATCACAATGCATCGTAAAATT 59.028 34.615 0.00 0.00 35.86 1.82
2793 3001 7.487829 GGTGTATCACAATGCATCGTAAAATTT 59.512 33.333 0.00 0.00 35.86 1.82
2794 3002 8.523464 GTGTATCACAATGCATCGTAAAATTTC 58.477 33.333 0.00 0.00 34.08 2.17
2795 3003 7.700234 TGTATCACAATGCATCGTAAAATTTCC 59.300 33.333 0.00 0.00 0.00 3.13
2796 3004 5.406649 TCACAATGCATCGTAAAATTTCCC 58.593 37.500 0.00 0.00 0.00 3.97
2799 3007 6.313411 CACAATGCATCGTAAAATTTCCCATT 59.687 34.615 0.00 0.00 0.00 3.16
2815 3023 6.458232 TTCCCATTATTTATCGTTGGTTGG 57.542 37.500 0.00 0.00 0.00 3.77
2819 3027 6.294508 CCCATTATTTATCGTTGGTTGGGATC 60.295 42.308 0.00 0.00 43.21 3.36
2826 3034 1.535462 CGTTGGTTGGGATCACACTTC 59.465 52.381 0.00 0.00 0.00 3.01
2833 3042 2.766313 TGGGATCACACTTCTGTTTCG 58.234 47.619 0.00 0.00 0.00 3.46
2843 3052 7.608153 TCACACTTCTGTTTCGGAATATAAGA 58.392 34.615 5.49 0.00 0.00 2.10
2867 3076 8.525316 AGATGTATTGATTTTCATGCAAGTCAA 58.475 29.630 15.95 15.95 0.00 3.18
2890 3099 8.366401 TCAAATTTGTGTATGTTTGACCATGAT 58.634 29.630 17.47 0.00 36.11 2.45
3072 6517 6.848451 TCACTTAATATTTTGGAACGAAGGC 58.152 36.000 0.00 0.00 0.00 4.35
3088 6533 3.650139 GAAGGCAGTAGTTTCTGAACGA 58.350 45.455 0.00 0.00 40.75 3.85
3098 6543 5.786401 AGTTTCTGAACGAATGCTATGTC 57.214 39.130 0.00 0.00 40.75 3.06
3099 6544 4.327357 AGTTTCTGAACGAATGCTATGTCG 59.673 41.667 0.00 0.00 40.75 4.35
3101 6546 1.258982 CTGAACGAATGCTATGTCGCC 59.741 52.381 0.00 0.00 40.95 5.54
3193 6641 6.356186 TCTTGTTAAGTCTCCTAAACCCTC 57.644 41.667 0.00 0.00 0.00 4.30
3209 6657 8.714906 CCTAAACCCTCTAGGAAAAATATGAGA 58.285 37.037 0.00 0.00 38.63 3.27
3230 6678 8.543862 TGAGAAGATATGTGCAATATGACATC 57.456 34.615 0.00 0.00 34.60 3.06
3231 6679 8.152246 TGAGAAGATATGTGCAATATGACATCA 58.848 33.333 0.00 0.00 34.60 3.07
3232 6680 8.913487 AGAAGATATGTGCAATATGACATCAA 57.087 30.769 0.00 0.00 34.60 2.57
3233 6681 9.346005 AGAAGATATGTGCAATATGACATCAAA 57.654 29.630 0.00 0.00 34.60 2.69
3234 6682 9.955208 GAAGATATGTGCAATATGACATCAAAA 57.045 29.630 0.00 0.00 34.60 2.44
3236 6684 9.740239 AGATATGTGCAATATGACATCAAAAAC 57.260 29.630 0.00 0.00 34.60 2.43
3237 6685 9.740239 GATATGTGCAATATGACATCAAAAACT 57.260 29.630 0.00 0.00 34.60 2.66
3238 6686 9.740239 ATATGTGCAATATGACATCAAAAACTC 57.260 29.630 0.00 0.00 34.60 3.01
3239 6687 7.218228 TGTGCAATATGACATCAAAAACTCT 57.782 32.000 0.00 0.00 0.00 3.24
3240 6688 7.307694 TGTGCAATATGACATCAAAAACTCTC 58.692 34.615 0.00 0.00 0.00 3.20
3241 6689 6.467047 GTGCAATATGACATCAAAAACTCTCG 59.533 38.462 0.00 0.00 0.00 4.04
3244 6692 7.427606 GCAATATGACATCAAAAACTCTCGAAG 59.572 37.037 0.00 0.00 0.00 3.79
3245 6693 8.659491 CAATATGACATCAAAAACTCTCGAAGA 58.341 33.333 0.00 0.00 0.00 2.87
3246 6694 8.777865 ATATGACATCAAAAACTCTCGAAGAA 57.222 30.769 0.00 0.00 34.09 2.52
3247 6695 6.918892 TGACATCAAAAACTCTCGAAGAAA 57.081 33.333 2.28 0.00 34.09 2.52
3248 6696 7.315247 TGACATCAAAAACTCTCGAAGAAAA 57.685 32.000 2.28 0.00 34.09 2.29
3249 6697 7.186804 TGACATCAAAAACTCTCGAAGAAAAC 58.813 34.615 2.28 0.00 34.09 2.43
3259 6707 0.941542 CGAAGAAAACGTGGGAGCAA 59.058 50.000 0.00 0.00 0.00 3.91
3263 6711 1.681264 AGAAAACGTGGGAGCAAAAGG 59.319 47.619 0.00 0.00 0.00 3.11
3289 6737 7.963532 AGAAACTGACATATCATAATACCCGT 58.036 34.615 0.00 0.00 33.22 5.28
3333 6781 2.749621 CCTTCCAAGAGAAACCATTCGG 59.250 50.000 0.00 0.00 40.63 4.30
3334 6782 3.559171 CCTTCCAAGAGAAACCATTCGGA 60.559 47.826 0.00 0.00 40.63 4.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.868622 ACTGGCACAAATTAAGTTGTTTACA 58.131 32.000 18.01 14.99 39.73 2.41
1 2 7.617557 CAACTGGCACAAATTAAGTTGTTTAC 58.382 34.615 18.01 11.63 41.67 2.01
2 3 6.256757 GCAACTGGCACAAATTAAGTTGTTTA 59.743 34.615 18.01 7.25 46.00 2.01
3 4 5.064579 GCAACTGGCACAAATTAAGTTGTTT 59.935 36.000 18.01 7.57 46.00 2.83
4 5 4.570369 GCAACTGGCACAAATTAAGTTGTT 59.430 37.500 18.01 1.49 46.00 2.83
5 6 4.119136 GCAACTGGCACAAATTAAGTTGT 58.881 39.130 15.15 15.15 46.00 3.32
6 7 3.182173 CGCAACTGGCACAAATTAAGTTG 59.818 43.478 13.78 13.78 46.66 3.16
7 8 3.380142 CGCAACTGGCACAAATTAAGTT 58.620 40.909 0.00 0.00 45.17 2.66
8 9 2.862140 GCGCAACTGGCACAAATTAAGT 60.862 45.455 0.30 0.00 45.17 2.24
9 10 1.720852 GCGCAACTGGCACAAATTAAG 59.279 47.619 0.30 0.00 45.17 1.85
10 11 1.067669 TGCGCAACTGGCACAAATTAA 59.932 42.857 8.16 0.00 45.17 1.40
11 12 0.670706 TGCGCAACTGGCACAAATTA 59.329 45.000 8.16 0.00 45.17 1.40
12 13 1.440893 TGCGCAACTGGCACAAATT 59.559 47.368 8.16 0.00 45.17 1.82
13 14 3.127451 TGCGCAACTGGCACAAAT 58.873 50.000 8.16 0.00 45.17 2.32
18 19 0.676151 TATCATGTGCGCAACTGGCA 60.676 50.000 14.00 5.72 45.17 4.92
19 20 0.028505 CTATCATGTGCGCAACTGGC 59.971 55.000 14.00 0.00 39.90 4.85
20 21 0.028505 GCTATCATGTGCGCAACTGG 59.971 55.000 14.00 1.85 0.00 4.00
21 22 0.028505 GGCTATCATGTGCGCAACTG 59.971 55.000 14.00 13.31 0.00 3.16
22 23 1.097547 GGGCTATCATGTGCGCAACT 61.098 55.000 14.00 0.00 41.00 3.16
23 24 1.356624 GGGCTATCATGTGCGCAAC 59.643 57.895 14.00 7.43 41.00 4.17
24 25 1.077858 TGGGCTATCATGTGCGCAA 60.078 52.632 14.00 2.60 46.37 4.85
25 26 2.588989 TGGGCTATCATGTGCGCA 59.411 55.556 5.66 5.66 46.99 6.09
26 27 1.097547 AGTTGGGCTATCATGTGCGC 61.098 55.000 0.00 0.00 41.57 6.09
27 28 2.238942 TAGTTGGGCTATCATGTGCG 57.761 50.000 0.00 0.00 0.00 5.34
28 29 2.880890 CCTTAGTTGGGCTATCATGTGC 59.119 50.000 0.00 0.00 0.00 4.57
29 30 4.156455 ACCTTAGTTGGGCTATCATGTG 57.844 45.455 0.00 0.00 0.00 3.21
30 31 4.862641 AACCTTAGTTGGGCTATCATGT 57.137 40.909 0.00 0.00 33.97 3.21
42 43 5.069518 ACCCATTACAACCAACCTTAGTT 57.930 39.130 0.00 0.00 36.33 2.24
43 44 4.734843 ACCCATTACAACCAACCTTAGT 57.265 40.909 0.00 0.00 0.00 2.24
44 45 5.812286 ACTACCCATTACAACCAACCTTAG 58.188 41.667 0.00 0.00 0.00 2.18
45 46 5.846528 ACTACCCATTACAACCAACCTTA 57.153 39.130 0.00 0.00 0.00 2.69
46 47 4.734843 ACTACCCATTACAACCAACCTT 57.265 40.909 0.00 0.00 0.00 3.50
47 48 5.489637 TGATACTACCCATTACAACCAACCT 59.510 40.000 0.00 0.00 0.00 3.50
48 49 5.747342 TGATACTACCCATTACAACCAACC 58.253 41.667 0.00 0.00 0.00 3.77
49 50 8.967664 TTATGATACTACCCATTACAACCAAC 57.032 34.615 0.00 0.00 0.00 3.77
50 51 8.774183 ACTTATGATACTACCCATTACAACCAA 58.226 33.333 0.00 0.00 0.00 3.67
51 52 8.326765 ACTTATGATACTACCCATTACAACCA 57.673 34.615 0.00 0.00 0.00 3.67
61 62 9.804758 GCATGATACTAACTTATGATACTACCC 57.195 37.037 0.00 0.00 0.00 3.69
90 91 9.908747 GGAGGTAGTATCATACACTAGTATCAT 57.091 37.037 0.00 0.00 38.88 2.45
91 92 8.327271 GGGAGGTAGTATCATACACTAGTATCA 58.673 40.741 0.00 0.00 38.88 2.15
92 93 8.550585 AGGGAGGTAGTATCATACACTAGTATC 58.449 40.741 0.00 0.00 38.88 2.24
93 94 8.465798 AGGGAGGTAGTATCATACACTAGTAT 57.534 38.462 0.00 0.00 41.57 2.12
94 95 7.885209 AGGGAGGTAGTATCATACACTAGTA 57.115 40.000 0.00 0.00 34.10 1.82
95 96 6.783517 AGGGAGGTAGTATCATACACTAGT 57.216 41.667 0.00 0.00 0.00 2.57
96 97 9.179909 CATTAGGGAGGTAGTATCATACACTAG 57.820 40.741 0.00 0.00 0.00 2.57
97 98 7.614583 GCATTAGGGAGGTAGTATCATACACTA 59.385 40.741 0.00 0.00 0.00 2.74
98 99 6.437793 GCATTAGGGAGGTAGTATCATACACT 59.562 42.308 0.00 0.00 0.00 3.55
99 100 6.210784 TGCATTAGGGAGGTAGTATCATACAC 59.789 42.308 0.00 0.00 0.00 2.90
100 101 6.319715 TGCATTAGGGAGGTAGTATCATACA 58.680 40.000 0.00 0.00 0.00 2.29
101 102 6.852420 TGCATTAGGGAGGTAGTATCATAC 57.148 41.667 0.00 0.00 0.00 2.39
102 103 8.344546 ACTATGCATTAGGGAGGTAGTATCATA 58.655 37.037 3.54 0.00 31.68 2.15
103 104 7.192628 ACTATGCATTAGGGAGGTAGTATCAT 58.807 38.462 3.54 0.00 31.68 2.45
104 105 6.562228 ACTATGCATTAGGGAGGTAGTATCA 58.438 40.000 3.54 0.00 31.68 2.15
105 106 8.770010 ATACTATGCATTAGGGAGGTAGTATC 57.230 38.462 3.54 0.00 31.70 2.24
106 107 8.344546 TGATACTATGCATTAGGGAGGTAGTAT 58.655 37.037 3.54 8.56 36.89 2.12
107 108 7.705700 TGATACTATGCATTAGGGAGGTAGTA 58.294 38.462 3.54 3.44 31.68 1.82
108 109 6.562228 TGATACTATGCATTAGGGAGGTAGT 58.438 40.000 3.54 0.88 31.68 2.73
109 110 7.667575 ATGATACTATGCATTAGGGAGGTAG 57.332 40.000 3.54 0.00 31.68 3.18
110 111 9.147732 CATATGATACTATGCATTAGGGAGGTA 57.852 37.037 3.54 0.00 31.68 3.08
111 112 7.071698 CCATATGATACTATGCATTAGGGAGGT 59.928 40.741 3.54 0.00 31.68 3.85
112 113 7.071698 ACCATATGATACTATGCATTAGGGAGG 59.928 40.741 3.54 0.00 31.68 4.30
113 114 8.027524 ACCATATGATACTATGCATTAGGGAG 57.972 38.462 3.54 0.00 31.68 4.30
114 115 7.995052 ACCATATGATACTATGCATTAGGGA 57.005 36.000 3.54 0.00 31.68 4.20
115 116 8.928448 ACTACCATATGATACTATGCATTAGGG 58.072 37.037 3.54 2.76 31.68 3.53
147 148 9.961265 CATGCATGACAATAAATAAAGTCATCT 57.039 29.630 22.59 0.00 45.68 2.90
148 149 9.955208 TCATGCATGACAATAAATAAAGTCATC 57.045 29.630 25.42 1.86 45.68 2.92
165 166 5.343307 ACACTAGTATGTGTCATGCATGA 57.657 39.130 25.42 25.42 46.90 3.07
166 167 5.176406 GCTACACTAGTATGTGTCATGCATG 59.824 44.000 21.07 21.07 46.90 4.06
167 168 5.163416 TGCTACACTAGTATGTGTCATGCAT 60.163 40.000 3.46 0.00 46.90 3.96
168 169 4.159506 TGCTACACTAGTATGTGTCATGCA 59.840 41.667 3.46 10.15 46.90 3.96
169 170 4.682787 TGCTACACTAGTATGTGTCATGC 58.317 43.478 3.46 8.05 46.90 4.06
170 171 7.776933 AAATGCTACACTAGTATGTGTCATG 57.223 36.000 3.46 0.00 46.90 3.07
180 181 9.856488 CCGTATCATAATAAATGCTACACTAGT 57.144 33.333 0.00 0.00 0.00 2.57
181 182 9.856488 ACCGTATCATAATAAATGCTACACTAG 57.144 33.333 0.00 0.00 0.00 2.57
218 219 8.794335 AATGAAGTAAAAGAGGGTTGAGTATC 57.206 34.615 0.00 0.00 0.00 2.24
221 222 8.990163 TTAAATGAAGTAAAAGAGGGTTGAGT 57.010 30.769 0.00 0.00 0.00 3.41
233 234 9.474313 AGGTGGCATAGAATTAAATGAAGTAAA 57.526 29.630 0.00 0.00 0.00 2.01
234 235 9.120538 GAGGTGGCATAGAATTAAATGAAGTAA 57.879 33.333 0.00 0.00 0.00 2.24
235 236 8.271458 TGAGGTGGCATAGAATTAAATGAAGTA 58.729 33.333 0.00 0.00 0.00 2.24
236 237 7.118723 TGAGGTGGCATAGAATTAAATGAAGT 58.881 34.615 0.00 0.00 0.00 3.01
237 238 7.572523 TGAGGTGGCATAGAATTAAATGAAG 57.427 36.000 0.00 0.00 0.00 3.02
238 239 7.779326 TGATGAGGTGGCATAGAATTAAATGAA 59.221 33.333 0.00 0.00 0.00 2.57
239 240 7.289310 TGATGAGGTGGCATAGAATTAAATGA 58.711 34.615 0.00 0.00 0.00 2.57
240 241 7.514784 TGATGAGGTGGCATAGAATTAAATG 57.485 36.000 0.00 0.00 0.00 2.32
241 242 8.537728 TTTGATGAGGTGGCATAGAATTAAAT 57.462 30.769 0.00 0.00 0.00 1.40
242 243 7.615365 ACTTTGATGAGGTGGCATAGAATTAAA 59.385 33.333 0.00 0.00 0.00 1.52
243 244 7.118723 ACTTTGATGAGGTGGCATAGAATTAA 58.881 34.615 0.00 0.00 0.00 1.40
244 245 6.662755 ACTTTGATGAGGTGGCATAGAATTA 58.337 36.000 0.00 0.00 0.00 1.40
245 246 5.513233 ACTTTGATGAGGTGGCATAGAATT 58.487 37.500 0.00 0.00 0.00 2.17
246 247 5.121380 ACTTTGATGAGGTGGCATAGAAT 57.879 39.130 0.00 0.00 0.00 2.40
247 248 4.574674 ACTTTGATGAGGTGGCATAGAA 57.425 40.909 0.00 0.00 0.00 2.10
248 249 4.264253 CAACTTTGATGAGGTGGCATAGA 58.736 43.478 0.00 0.00 30.59 1.98
249 250 3.181493 GCAACTTTGATGAGGTGGCATAG 60.181 47.826 0.00 0.00 34.87 2.23
250 251 2.754552 GCAACTTTGATGAGGTGGCATA 59.245 45.455 0.00 0.00 34.87 3.14
251 252 1.547372 GCAACTTTGATGAGGTGGCAT 59.453 47.619 0.00 0.00 34.87 4.40
252 253 0.961019 GCAACTTTGATGAGGTGGCA 59.039 50.000 0.00 0.00 34.87 4.92
253 254 3.800628 GCAACTTTGATGAGGTGGC 57.199 52.632 0.00 0.00 34.87 5.01
271 272 3.748083 AGTATCATGCATGCCAACTAGG 58.252 45.455 22.25 0.00 41.84 3.02
272 273 4.391216 GCTAGTATCATGCATGCCAACTAG 59.609 45.833 32.38 32.38 37.27 2.57
273 274 4.040829 AGCTAGTATCATGCATGCCAACTA 59.959 41.667 22.25 22.70 0.00 2.24
274 275 3.144506 GCTAGTATCATGCATGCCAACT 58.855 45.455 22.25 22.78 0.00 3.16
275 276 3.144506 AGCTAGTATCATGCATGCCAAC 58.855 45.455 22.25 17.59 0.00 3.77
276 277 3.497103 AGCTAGTATCATGCATGCCAA 57.503 42.857 22.25 5.34 0.00 4.52
277 278 4.223477 TCATAGCTAGTATCATGCATGCCA 59.777 41.667 22.25 8.84 0.00 4.92
278 279 4.763073 TCATAGCTAGTATCATGCATGCC 58.237 43.478 22.25 11.72 0.00 4.40
279 280 7.208777 AGTATCATAGCTAGTATCATGCATGC 58.791 38.462 22.25 11.82 0.00 4.06
280 281 7.866898 GGAGTATCATAGCTAGTATCATGCATG 59.133 40.741 21.07 21.07 36.25 4.06
281 282 7.015098 GGGAGTATCATAGCTAGTATCATGCAT 59.985 40.741 0.00 0.00 36.25 3.96
282 283 6.322456 GGGAGTATCATAGCTAGTATCATGCA 59.678 42.308 0.00 0.00 36.25 3.96
283 284 6.322456 TGGGAGTATCATAGCTAGTATCATGC 59.678 42.308 0.00 0.00 36.25 4.06
284 285 7.888250 TGGGAGTATCATAGCTAGTATCATG 57.112 40.000 0.00 0.00 36.25 3.07
286 287 9.409918 GTAATGGGAGTATCATAGCTAGTATCA 57.590 37.037 0.00 0.00 36.25 2.15
287 288 9.409918 TGTAATGGGAGTATCATAGCTAGTATC 57.590 37.037 0.00 0.00 36.25 2.24
288 289 9.769677 TTGTAATGGGAGTATCATAGCTAGTAT 57.230 33.333 0.00 0.00 36.25 2.12
289 290 9.021807 GTTGTAATGGGAGTATCATAGCTAGTA 57.978 37.037 0.00 0.00 36.25 1.82
290 291 7.038941 GGTTGTAATGGGAGTATCATAGCTAGT 60.039 40.741 0.00 0.00 36.25 2.57
291 292 7.039011 TGGTTGTAATGGGAGTATCATAGCTAG 60.039 40.741 0.00 0.00 36.25 3.42
292 293 6.785466 TGGTTGTAATGGGAGTATCATAGCTA 59.215 38.462 0.00 0.00 36.25 3.32
293 294 5.606749 TGGTTGTAATGGGAGTATCATAGCT 59.393 40.000 0.00 0.00 36.25 3.32
294 295 5.865085 TGGTTGTAATGGGAGTATCATAGC 58.135 41.667 0.00 0.00 36.25 2.97
295 296 5.934625 GCTGGTTGTAATGGGAGTATCATAG 59.065 44.000 0.00 0.00 36.25 2.23
296 297 5.221843 GGCTGGTTGTAATGGGAGTATCATA 60.222 44.000 0.00 0.00 36.25 2.15
297 298 4.446311 GGCTGGTTGTAATGGGAGTATCAT 60.446 45.833 0.00 0.00 36.25 2.45
298 299 3.118038 GGCTGGTTGTAATGGGAGTATCA 60.118 47.826 0.00 0.00 36.25 2.15
299 300 3.136626 AGGCTGGTTGTAATGGGAGTATC 59.863 47.826 0.00 0.00 0.00 2.24
300 301 3.123273 AGGCTGGTTGTAATGGGAGTAT 58.877 45.455 0.00 0.00 0.00 2.12
301 302 2.557869 AGGCTGGTTGTAATGGGAGTA 58.442 47.619 0.00 0.00 0.00 2.59
302 303 1.372501 AGGCTGGTTGTAATGGGAGT 58.627 50.000 0.00 0.00 0.00 3.85
303 304 3.199946 TCTTAGGCTGGTTGTAATGGGAG 59.800 47.826 0.00 0.00 0.00 4.30
304 305 3.186283 TCTTAGGCTGGTTGTAATGGGA 58.814 45.455 0.00 0.00 0.00 4.37
305 306 3.644966 TCTTAGGCTGGTTGTAATGGG 57.355 47.619 0.00 0.00 0.00 4.00
306 307 7.556275 TCTTATTTCTTAGGCTGGTTGTAATGG 59.444 37.037 0.00 0.00 0.00 3.16
307 308 8.506168 TCTTATTTCTTAGGCTGGTTGTAATG 57.494 34.615 0.00 0.00 0.00 1.90
308 309 9.700831 ATTCTTATTTCTTAGGCTGGTTGTAAT 57.299 29.630 0.00 0.00 0.00 1.89
309 310 8.956426 CATTCTTATTTCTTAGGCTGGTTGTAA 58.044 33.333 0.00 0.00 0.00 2.41
310 311 8.107095 ACATTCTTATTTCTTAGGCTGGTTGTA 58.893 33.333 0.00 0.00 0.00 2.41
311 312 6.948309 ACATTCTTATTTCTTAGGCTGGTTGT 59.052 34.615 0.00 0.00 0.00 3.32
312 313 7.396540 ACATTCTTATTTCTTAGGCTGGTTG 57.603 36.000 0.00 0.00 0.00 3.77
313 314 9.700831 AATACATTCTTATTTCTTAGGCTGGTT 57.299 29.630 0.00 0.00 0.00 3.67
372 373 8.096414 GGGCATGGCATTATTGATAAAGTTTAT 58.904 33.333 22.06 7.87 0.00 1.40
373 374 7.289782 AGGGCATGGCATTATTGATAAAGTTTA 59.710 33.333 22.06 0.00 0.00 2.01
374 375 6.100134 AGGGCATGGCATTATTGATAAAGTTT 59.900 34.615 22.06 0.00 0.00 2.66
375 376 5.603813 AGGGCATGGCATTATTGATAAAGTT 59.396 36.000 22.06 0.00 0.00 2.66
376 377 5.149976 AGGGCATGGCATTATTGATAAAGT 58.850 37.500 22.06 0.00 0.00 2.66
377 378 5.733620 AGGGCATGGCATTATTGATAAAG 57.266 39.130 22.06 0.00 0.00 1.85
378 379 7.795534 AATAGGGCATGGCATTATTGATAAA 57.204 32.000 22.06 0.00 0.00 1.40
379 380 7.795534 AAATAGGGCATGGCATTATTGATAA 57.204 32.000 22.06 0.00 0.00 1.75
380 381 7.560991 CCTAAATAGGGCATGGCATTATTGATA 59.439 37.037 22.06 12.24 39.86 2.15
381 382 6.381994 CCTAAATAGGGCATGGCATTATTGAT 59.618 38.462 22.06 11.82 39.86 2.57
382 383 5.716228 CCTAAATAGGGCATGGCATTATTGA 59.284 40.000 22.06 14.98 39.86 2.57
383 384 5.716228 TCCTAAATAGGGCATGGCATTATTG 59.284 40.000 22.06 12.07 43.79 1.90
384 385 5.902760 TCCTAAATAGGGCATGGCATTATT 58.097 37.500 22.06 19.12 43.79 1.40
385 386 5.253798 TCTCCTAAATAGGGCATGGCATTAT 59.746 40.000 22.06 14.57 43.79 1.28
386 387 4.601420 TCTCCTAAATAGGGCATGGCATTA 59.399 41.667 22.06 12.90 43.79 1.90
387 388 3.398967 TCTCCTAAATAGGGCATGGCATT 59.601 43.478 22.06 10.22 43.79 3.56
388 389 2.988859 TCTCCTAAATAGGGCATGGCAT 59.011 45.455 22.06 17.36 43.79 4.40
389 390 2.417652 TCTCCTAAATAGGGCATGGCA 58.582 47.619 22.06 0.94 43.79 4.92
390 391 3.508845 TTCTCCTAAATAGGGCATGGC 57.491 47.619 11.56 11.56 43.79 4.40
391 392 5.449553 ACTTTTCTCCTAAATAGGGCATGG 58.550 41.667 6.64 0.00 43.79 3.66
392 393 6.681368 GCAACTTTTCTCCTAAATAGGGCATG 60.681 42.308 6.64 0.00 43.79 4.06
393 394 5.360999 GCAACTTTTCTCCTAAATAGGGCAT 59.639 40.000 6.64 0.00 43.79 4.40
394 395 4.705023 GCAACTTTTCTCCTAAATAGGGCA 59.295 41.667 6.64 0.00 43.79 5.36
395 396 4.705023 TGCAACTTTTCTCCTAAATAGGGC 59.295 41.667 6.64 0.15 43.79 5.19
396 397 5.163754 CGTGCAACTTTTCTCCTAAATAGGG 60.164 44.000 6.64 0.00 38.32 3.53
397 398 5.411669 ACGTGCAACTTTTCTCCTAAATAGG 59.588 40.000 0.00 0.00 38.88 2.57
398 399 6.481954 ACGTGCAACTTTTCTCCTAAATAG 57.518 37.500 0.00 0.00 31.75 1.73
399 400 5.119588 CGACGTGCAACTTTTCTCCTAAATA 59.880 40.000 0.00 0.00 31.75 1.40
400 401 4.084013 CGACGTGCAACTTTTCTCCTAAAT 60.084 41.667 0.00 0.00 31.75 1.40
401 402 3.246699 CGACGTGCAACTTTTCTCCTAAA 59.753 43.478 0.00 0.00 31.75 1.85
402 403 2.798283 CGACGTGCAACTTTTCTCCTAA 59.202 45.455 0.00 0.00 31.75 2.69
403 404 2.223876 ACGACGTGCAACTTTTCTCCTA 60.224 45.455 0.00 0.00 31.75 2.94
404 405 1.217882 CGACGTGCAACTTTTCTCCT 58.782 50.000 0.00 0.00 31.75 3.69
405 406 0.935196 ACGACGTGCAACTTTTCTCC 59.065 50.000 0.00 0.00 31.75 3.71
406 407 1.326548 ACACGACGTGCAACTTTTCTC 59.673 47.619 27.11 0.00 36.98 2.87
407 408 1.062002 CACACGACGTGCAACTTTTCT 59.938 47.619 27.11 1.85 39.19 2.52
408 409 1.452717 CACACGACGTGCAACTTTTC 58.547 50.000 27.11 0.00 39.19 2.29
409 410 0.098025 CCACACGACGTGCAACTTTT 59.902 50.000 27.11 3.42 44.91 2.27
410 411 1.022451 ACCACACGACGTGCAACTTT 61.022 50.000 27.11 4.20 44.91 2.66
411 412 0.179105 TACCACACGACGTGCAACTT 60.179 50.000 27.11 10.17 44.91 2.66
412 413 0.179105 TTACCACACGACGTGCAACT 60.179 50.000 27.11 5.40 44.91 3.16
413 414 0.863144 ATTACCACACGACGTGCAAC 59.137 50.000 27.11 0.00 44.91 4.17
414 415 2.060284 GTATTACCACACGACGTGCAA 58.940 47.619 27.11 15.87 44.91 4.08
415 416 1.700523 GTATTACCACACGACGTGCA 58.299 50.000 27.11 7.91 44.91 4.57
416 417 0.636733 CGTATTACCACACGACGTGC 59.363 55.000 27.11 7.81 44.91 5.34
417 418 0.636733 GCGTATTACCACACGACGTG 59.363 55.000 25.72 25.72 45.92 4.49
418 419 0.523072 AGCGTATTACCACACGACGT 59.477 50.000 0.00 0.00 40.56 4.34
419 420 1.621107 AAGCGTATTACCACACGACG 58.379 50.000 0.00 0.00 40.56 5.12
420 421 3.248266 AGAAAGCGTATTACCACACGAC 58.752 45.455 0.00 0.00 40.56 4.34
421 422 3.192001 AGAGAAAGCGTATTACCACACGA 59.808 43.478 0.00 0.00 40.56 4.35
422 423 3.508762 AGAGAAAGCGTATTACCACACG 58.491 45.455 0.00 0.00 41.04 4.49
423 424 4.745649 AGAGAGAAAGCGTATTACCACAC 58.254 43.478 0.00 0.00 0.00 3.82
424 425 4.142227 GGAGAGAGAAAGCGTATTACCACA 60.142 45.833 0.00 0.00 0.00 4.17
425 426 4.142227 TGGAGAGAGAAAGCGTATTACCAC 60.142 45.833 0.00 0.00 0.00 4.16
426 427 4.021229 TGGAGAGAGAAAGCGTATTACCA 58.979 43.478 0.00 0.00 0.00 3.25
427 428 4.098196 AGTGGAGAGAGAAAGCGTATTACC 59.902 45.833 0.00 0.00 0.00 2.85
428 429 5.251601 AGTGGAGAGAGAAAGCGTATTAC 57.748 43.478 0.00 0.00 0.00 1.89
429 430 5.448768 CGAAGTGGAGAGAGAAAGCGTATTA 60.449 44.000 0.00 0.00 0.00 0.98
430 431 4.675671 CGAAGTGGAGAGAGAAAGCGTATT 60.676 45.833 0.00 0.00 0.00 1.89
431 432 3.181495 CGAAGTGGAGAGAGAAAGCGTAT 60.181 47.826 0.00 0.00 0.00 3.06
432 433 2.161808 CGAAGTGGAGAGAGAAAGCGTA 59.838 50.000 0.00 0.00 0.00 4.42
433 434 1.068194 CGAAGTGGAGAGAGAAAGCGT 60.068 52.381 0.00 0.00 0.00 5.07
434 435 1.623359 CGAAGTGGAGAGAGAAAGCG 58.377 55.000 0.00 0.00 0.00 4.68
435 436 1.067213 AGCGAAGTGGAGAGAGAAAGC 60.067 52.381 0.00 0.00 0.00 3.51
436 437 4.647424 ATAGCGAAGTGGAGAGAGAAAG 57.353 45.455 0.00 0.00 0.00 2.62
437 438 5.163540 GGTTATAGCGAAGTGGAGAGAGAAA 60.164 44.000 0.00 0.00 0.00 2.52
438 439 4.338682 GGTTATAGCGAAGTGGAGAGAGAA 59.661 45.833 0.00 0.00 0.00 2.87
439 440 3.884091 GGTTATAGCGAAGTGGAGAGAGA 59.116 47.826 0.00 0.00 0.00 3.10
440 441 3.632604 TGGTTATAGCGAAGTGGAGAGAG 59.367 47.826 0.00 0.00 0.00 3.20
441 442 3.628008 TGGTTATAGCGAAGTGGAGAGA 58.372 45.455 0.00 0.00 0.00 3.10
442 443 4.038042 TGATGGTTATAGCGAAGTGGAGAG 59.962 45.833 0.00 0.00 0.00 3.20
443 444 3.958147 TGATGGTTATAGCGAAGTGGAGA 59.042 43.478 0.00 0.00 0.00 3.71
444 445 4.051922 GTGATGGTTATAGCGAAGTGGAG 58.948 47.826 0.00 0.00 0.00 3.86
445 446 3.181469 GGTGATGGTTATAGCGAAGTGGA 60.181 47.826 0.00 0.00 0.00 4.02
446 447 3.131396 GGTGATGGTTATAGCGAAGTGG 58.869 50.000 0.00 0.00 0.00 4.00
447 448 2.794910 CGGTGATGGTTATAGCGAAGTG 59.205 50.000 0.00 0.00 37.49 3.16
448 449 2.223971 CCGGTGATGGTTATAGCGAAGT 60.224 50.000 0.00 0.00 37.49 3.01
449 450 2.223971 ACCGGTGATGGTTATAGCGAAG 60.224 50.000 6.12 0.00 39.99 3.79
450 451 1.758280 ACCGGTGATGGTTATAGCGAA 59.242 47.619 6.12 0.00 39.99 4.70
451 452 1.405872 ACCGGTGATGGTTATAGCGA 58.594 50.000 6.12 0.00 39.99 4.93
452 453 3.980583 ACCGGTGATGGTTATAGCG 57.019 52.632 6.12 0.00 39.99 4.26
459 460 1.295423 CTCCGAAACCGGTGATGGT 59.705 57.895 8.52 0.00 46.77 3.55
460 461 1.449601 CCTCCGAAACCGGTGATGG 60.450 63.158 8.52 10.72 46.77 3.51
461 462 0.036765 TTCCTCCGAAACCGGTGATG 60.037 55.000 8.52 0.00 46.77 3.07
462 463 0.909623 ATTCCTCCGAAACCGGTGAT 59.090 50.000 8.52 0.00 46.77 3.06
463 464 0.248289 GATTCCTCCGAAACCGGTGA 59.752 55.000 8.52 0.00 46.77 4.02
464 465 0.743345 GGATTCCTCCGAAACCGGTG 60.743 60.000 8.52 0.00 46.77 4.94
465 466 1.196104 TGGATTCCTCCGAAACCGGT 61.196 55.000 0.00 0.00 45.37 5.28
466 467 0.180406 ATGGATTCCTCCGAAACCGG 59.820 55.000 0.00 0.00 45.37 5.28
467 468 2.038387 AATGGATTCCTCCGAAACCG 57.962 50.000 3.95 0.00 45.37 4.44
468 469 3.352648 TGAAATGGATTCCTCCGAAACC 58.647 45.455 3.95 0.00 45.37 3.27
469 470 5.385509 TTTGAAATGGATTCCTCCGAAAC 57.614 39.130 3.95 0.00 45.37 2.78
470 471 6.397272 CATTTTGAAATGGATTCCTCCGAAA 58.603 36.000 3.95 3.82 45.37 3.46
471 472 5.964758 CATTTTGAAATGGATTCCTCCGAA 58.035 37.500 3.95 0.00 45.37 4.30
472 473 5.581126 CATTTTGAAATGGATTCCTCCGA 57.419 39.130 3.95 0.00 45.37 4.55
484 485 8.814931 TCTTCCATGGACATAACATTTTGAAAT 58.185 29.630 15.91 0.00 0.00 2.17
485 486 8.187913 TCTTCCATGGACATAACATTTTGAAA 57.812 30.769 15.91 0.00 0.00 2.69
486 487 7.773489 TCTTCCATGGACATAACATTTTGAA 57.227 32.000 15.91 0.00 0.00 2.69
487 488 7.773489 TTCTTCCATGGACATAACATTTTGA 57.227 32.000 15.91 0.00 0.00 2.69
488 489 8.711457 GTTTTCTTCCATGGACATAACATTTTG 58.289 33.333 15.91 0.00 0.00 2.44
489 490 8.650490 AGTTTTCTTCCATGGACATAACATTTT 58.350 29.630 15.91 0.00 0.00 1.82
490 491 8.193953 AGTTTTCTTCCATGGACATAACATTT 57.806 30.769 15.91 0.00 0.00 2.32
491 492 7.781324 AGTTTTCTTCCATGGACATAACATT 57.219 32.000 15.91 0.00 0.00 2.71
492 493 7.781324 AAGTTTTCTTCCATGGACATAACAT 57.219 32.000 15.91 6.99 34.76 2.71
493 494 7.432869 CAAAGTTTTCTTCCATGGACATAACA 58.567 34.615 15.91 0.00 39.48 2.41
494 495 6.868339 CCAAAGTTTTCTTCCATGGACATAAC 59.132 38.462 15.91 15.57 37.45 1.89
495 496 6.780031 TCCAAAGTTTTCTTCCATGGACATAA 59.220 34.615 15.91 6.21 38.59 1.90
496 497 6.310941 TCCAAAGTTTTCTTCCATGGACATA 58.689 36.000 15.91 0.00 38.59 2.29
497 498 5.147032 TCCAAAGTTTTCTTCCATGGACAT 58.853 37.500 15.91 0.00 38.59 3.06
498 499 4.541705 TCCAAAGTTTTCTTCCATGGACA 58.458 39.130 15.91 0.22 38.59 4.02
499 500 4.827284 TCTCCAAAGTTTTCTTCCATGGAC 59.173 41.667 15.91 1.82 38.59 4.02
500 501 5.060427 TCTCCAAAGTTTTCTTCCATGGA 57.940 39.130 11.44 11.44 40.15 3.41
501 502 5.990120 ATCTCCAAAGTTTTCTTCCATGG 57.010 39.130 4.97 4.97 39.48 3.66
504 505 9.672673 CTCTATTATCTCCAAAGTTTTCTTCCA 57.327 33.333 0.00 0.00 39.48 3.53
505 506 9.114952 CCTCTATTATCTCCAAAGTTTTCTTCC 57.885 37.037 0.00 0.00 39.48 3.46
506 507 9.674068 ACCTCTATTATCTCCAAAGTTTTCTTC 57.326 33.333 0.00 0.00 39.48 2.87
527 528 9.298774 CGATTCTCGTTAAAATAAGTTACCTCT 57.701 33.333 0.00 0.00 34.72 3.69
528 529 9.294030 TCGATTCTCGTTAAAATAAGTTACCTC 57.706 33.333 0.00 0.00 41.35 3.85
529 530 9.813446 ATCGATTCTCGTTAAAATAAGTTACCT 57.187 29.630 0.00 0.00 41.35 3.08
534 535 9.582431 TCTCAATCGATTCTCGTTAAAATAAGT 57.418 29.630 7.92 0.00 41.35 2.24
539 540 9.744468 TGATATCTCAATCGATTCTCGTTAAAA 57.256 29.630 7.92 0.00 41.35 1.52
540 541 9.744468 TTGATATCTCAATCGATTCTCGTTAAA 57.256 29.630 7.92 0.00 37.53 1.52
541 542 9.744468 TTTGATATCTCAATCGATTCTCGTTAA 57.256 29.630 7.92 0.00 40.95 2.01
542 543 9.744468 TTTTGATATCTCAATCGATTCTCGTTA 57.256 29.630 7.92 0.22 40.95 3.18
543 544 8.543774 GTTTTGATATCTCAATCGATTCTCGTT 58.456 33.333 7.92 0.00 40.95 3.85
544 545 7.706607 TGTTTTGATATCTCAATCGATTCTCGT 59.293 33.333 7.92 0.00 40.95 4.18
545 546 8.065557 TGTTTTGATATCTCAATCGATTCTCG 57.934 34.615 7.92 0.00 40.95 4.04
552 553 9.831737 ACTTTCTTTGTTTTGATATCTCAATCG 57.168 29.630 3.98 1.12 40.95 3.34
561 562 9.730420 GCTTCAACTACTTTCTTTGTTTTGATA 57.270 29.630 0.00 0.00 0.00 2.15
562 563 7.706607 GGCTTCAACTACTTTCTTTGTTTTGAT 59.293 33.333 0.00 0.00 0.00 2.57
563 564 7.033185 GGCTTCAACTACTTTCTTTGTTTTGA 58.967 34.615 0.00 0.00 0.00 2.69
564 565 6.811170 TGGCTTCAACTACTTTCTTTGTTTTG 59.189 34.615 0.00 0.00 0.00 2.44
565 566 6.930731 TGGCTTCAACTACTTTCTTTGTTTT 58.069 32.000 0.00 0.00 0.00 2.43
638 639 2.483876 GCTTTTGCCTTTTGGACCTTC 58.516 47.619 0.00 0.00 44.07 3.46
737 740 1.938577 CACATCTCAAGATCTTGCGGG 59.061 52.381 27.45 19.34 40.24 6.13
837 840 0.840288 TGCAGCAGGGTTAGGGAGAA 60.840 55.000 0.00 0.00 0.00 2.87
871 874 2.476821 CTTTGCTTGCCTTGTTCTTGG 58.523 47.619 0.00 0.00 0.00 3.61
872 875 1.862827 GCTTTGCTTGCCTTGTTCTTG 59.137 47.619 0.00 0.00 0.00 3.02
1102 1105 4.680237 CGTGTGCTGGGAGCGGAA 62.680 66.667 0.00 0.00 46.26 4.30
1131 1140 1.586154 ATGCGCCAACGGAAAAGAGG 61.586 55.000 4.18 0.00 45.12 3.69
1183 1192 5.473162 CCGTATCCAAGAATATCCATGCAAA 59.527 40.000 0.00 0.00 0.00 3.68
1291 1313 1.201414 TGTGATATGCTGTGTCGTCGT 59.799 47.619 0.00 0.00 0.00 4.34
1318 1340 3.373748 TGTGTTAGCTAATTCCATGTGCG 59.626 43.478 9.88 0.00 0.00 5.34
1408 1436 3.060740 GCATTGTATGGTACTTCGTACGC 60.061 47.826 11.24 0.00 39.64 4.42
1418 1587 3.364460 AACTGCTGGCATTGTATGGTA 57.636 42.857 0.00 0.00 0.00 3.25
1438 1607 9.214957 CCAAGCACGAAACTAATCCATTATATA 57.785 33.333 0.00 0.00 0.00 0.86
1439 1608 7.936847 TCCAAGCACGAAACTAATCCATTATAT 59.063 33.333 0.00 0.00 0.00 0.86
1440 1609 7.276658 TCCAAGCACGAAACTAATCCATTATA 58.723 34.615 0.00 0.00 0.00 0.98
1441 1610 6.119536 TCCAAGCACGAAACTAATCCATTAT 58.880 36.000 0.00 0.00 0.00 1.28
1477 1646 3.259123 GGGATTGCCATTGAACAGTTCTT 59.741 43.478 14.51 0.00 35.15 2.52
1511 1680 4.095782 ACGTGTCACCAAATATACCAATGC 59.904 41.667 0.00 0.00 0.00 3.56
1761 1939 0.179100 ACCGATCGATTCAGCTGTGG 60.179 55.000 18.66 6.54 0.00 4.17
1803 1981 3.262420 GCAGATGGTAGACACGTGAAAT 58.738 45.455 25.01 9.81 0.00 2.17
1824 2002 0.029167 TGCACTGTCGCACACATTTG 59.971 50.000 1.65 0.00 36.86 2.32
1830 2008 1.517210 ATTGCATGCACTGTCGCACA 61.517 50.000 22.58 1.96 46.56 4.57
1854 2032 4.748600 CAGATACATGGAGTGCATGTACTG 59.251 45.833 32.02 30.58 44.95 2.74
1855 2033 4.741837 GCAGATACATGGAGTGCATGTACT 60.742 45.833 32.02 26.40 44.95 2.73
1856 2034 3.496130 GCAGATACATGGAGTGCATGTAC 59.504 47.826 32.02 25.08 44.95 2.90
2039 2217 1.078823 TGGATATCACCGGGCTAGGAT 59.921 52.381 6.32 3.23 34.73 3.24
2489 2695 0.174389 AGCAAGTCGATCGTCATGCT 59.826 50.000 29.82 29.82 39.16 3.79
2490 2696 1.840181 TAGCAAGTCGATCGTCATGC 58.160 50.000 26.99 26.99 0.00 4.06
2528 2734 3.652057 ACCGGGAATCAAGTGAATGAT 57.348 42.857 6.32 0.00 41.74 2.45
2583 2789 2.029290 ACGAACTCGGCTACTGTTCATT 60.029 45.455 3.88 0.00 44.95 2.57
2584 2790 1.544691 ACGAACTCGGCTACTGTTCAT 59.455 47.619 3.88 0.00 44.95 2.57
2585 2791 0.956633 ACGAACTCGGCTACTGTTCA 59.043 50.000 3.88 0.00 44.95 3.18
2586 2792 1.984297 GAACGAACTCGGCTACTGTTC 59.016 52.381 3.88 0.00 44.95 3.18
2587 2793 1.336609 GGAACGAACTCGGCTACTGTT 60.337 52.381 3.88 0.00 44.95 3.16
2588 2794 0.243095 GGAACGAACTCGGCTACTGT 59.757 55.000 3.88 0.00 44.95 3.55
2589 2795 0.526662 AGGAACGAACTCGGCTACTG 59.473 55.000 3.88 0.00 44.95 2.74
2598 2806 6.849028 ATGTAAACATCATCGAGGAACGAACT 60.849 38.462 2.91 0.00 42.84 3.01
2612 2820 8.908903 ACTGTTCCTTTACAAATGTAAACATCA 58.091 29.630 13.28 9.81 43.28 3.07
2632 2840 6.918022 CCCTTTCATTTGTCTTTACACTGTTC 59.082 38.462 0.00 0.00 34.61 3.18
2635 2843 5.010012 AGCCCTTTCATTTGTCTTTACACTG 59.990 40.000 0.00 0.00 34.61 3.66
2636 2844 5.140454 AGCCCTTTCATTTGTCTTTACACT 58.860 37.500 0.00 0.00 34.61 3.55
2637 2845 5.453567 AGCCCTTTCATTTGTCTTTACAC 57.546 39.130 0.00 0.00 34.61 2.90
2638 2846 7.589958 TTAAGCCCTTTCATTTGTCTTTACA 57.410 32.000 0.00 0.00 0.00 2.41
2639 2847 8.925700 CAATTAAGCCCTTTCATTTGTCTTTAC 58.074 33.333 0.00 0.00 0.00 2.01
2641 2849 6.936335 CCAATTAAGCCCTTTCATTTGTCTTT 59.064 34.615 0.00 0.00 0.00 2.52
2642 2850 6.466812 CCAATTAAGCCCTTTCATTTGTCTT 58.533 36.000 0.00 0.00 0.00 3.01
2644 2852 5.178061 CCCAATTAAGCCCTTTCATTTGTC 58.822 41.667 0.00 0.00 0.00 3.18
2647 2855 3.054434 GGCCCAATTAAGCCCTTTCATTT 60.054 43.478 6.64 0.00 43.76 2.32
2648 2856 2.505407 GGCCCAATTAAGCCCTTTCATT 59.495 45.455 6.64 0.00 43.76 2.57
2650 2858 1.567357 GGCCCAATTAAGCCCTTTCA 58.433 50.000 6.64 0.00 43.76 2.69
2703 2911 2.618709 CTGGGCCTTATTAAAGCCGAAG 59.381 50.000 4.53 6.51 32.69 3.79
2704 2912 2.025699 ACTGGGCCTTATTAAAGCCGAA 60.026 45.455 4.53 1.23 32.69 4.30
2705 2913 1.562475 ACTGGGCCTTATTAAAGCCGA 59.438 47.619 4.53 5.48 32.69 5.54
2706 2914 2.052782 ACTGGGCCTTATTAAAGCCG 57.947 50.000 4.53 0.91 32.69 5.52
2707 2915 4.533815 ACTAACTGGGCCTTATTAAAGCC 58.466 43.478 4.53 7.42 0.00 4.35
2708 2916 5.437946 AGACTAACTGGGCCTTATTAAAGC 58.562 41.667 4.53 0.00 0.00 3.51
2709 2917 9.274206 GATAAGACTAACTGGGCCTTATTAAAG 57.726 37.037 4.53 0.00 32.19 1.85
2710 2918 8.999895 AGATAAGACTAACTGGGCCTTATTAAA 58.000 33.333 4.53 0.00 32.19 1.52
2711 2919 8.429641 CAGATAAGACTAACTGGGCCTTATTAA 58.570 37.037 4.53 0.00 32.19 1.40
2712 2920 7.567622 ACAGATAAGACTAACTGGGCCTTATTA 59.432 37.037 4.53 0.00 33.36 0.98
2713 2921 6.387220 ACAGATAAGACTAACTGGGCCTTATT 59.613 38.462 4.53 0.00 33.36 1.40
2714 2922 5.905913 ACAGATAAGACTAACTGGGCCTTAT 59.094 40.000 4.53 0.00 33.36 1.73
2715 2923 5.278061 ACAGATAAGACTAACTGGGCCTTA 58.722 41.667 4.53 0.00 33.36 2.69
2716 2924 4.104831 ACAGATAAGACTAACTGGGCCTT 58.895 43.478 4.53 0.00 33.36 4.35
2717 2925 3.725634 ACAGATAAGACTAACTGGGCCT 58.274 45.455 4.53 0.00 33.36 5.19
2718 2926 4.192317 CAACAGATAAGACTAACTGGGCC 58.808 47.826 0.00 0.00 33.36 5.80
2719 2927 4.081087 TCCAACAGATAAGACTAACTGGGC 60.081 45.833 0.00 0.00 33.36 5.36
2720 2928 5.677319 TCCAACAGATAAGACTAACTGGG 57.323 43.478 0.00 0.00 33.36 4.45
2721 2929 5.980116 CGATCCAACAGATAAGACTAACTGG 59.020 44.000 0.00 0.00 34.42 4.00
2722 2930 5.460419 GCGATCCAACAGATAAGACTAACTG 59.540 44.000 0.00 0.00 34.42 3.16
2723 2931 5.452077 GGCGATCCAACAGATAAGACTAACT 60.452 44.000 0.00 0.00 34.42 2.24
2724 2932 4.745620 GGCGATCCAACAGATAAGACTAAC 59.254 45.833 0.00 0.00 34.42 2.34
2725 2933 4.404394 TGGCGATCCAACAGATAAGACTAA 59.596 41.667 0.00 0.00 39.99 2.24
2726 2934 3.958147 TGGCGATCCAACAGATAAGACTA 59.042 43.478 0.00 0.00 39.99 2.59
2727 2935 2.766263 TGGCGATCCAACAGATAAGACT 59.234 45.455 0.00 0.00 39.99 3.24
2728 2936 3.179443 TGGCGATCCAACAGATAAGAC 57.821 47.619 0.00 0.00 39.99 3.01
2729 2937 3.904800 TTGGCGATCCAACAGATAAGA 57.095 42.857 0.00 0.00 46.89 2.10
2755 2963 9.051679 GCATTGTGATACACCAAAGTATATGTA 57.948 33.333 0.00 0.00 34.95 2.29
2756 2964 7.555914 TGCATTGTGATACACCAAAGTATATGT 59.444 33.333 0.00 0.00 34.95 2.29
2757 2965 7.929159 TGCATTGTGATACACCAAAGTATATG 58.071 34.615 0.00 0.00 34.95 1.78
2758 2966 8.696043 ATGCATTGTGATACACCAAAGTATAT 57.304 30.769 0.00 0.00 34.95 0.86
2759 2967 7.042119 CGATGCATTGTGATACACCAAAGTATA 60.042 37.037 0.00 0.00 34.95 1.47
2760 2968 6.238456 CGATGCATTGTGATACACCAAAGTAT 60.238 38.462 0.00 0.00 37.40 2.12
2761 2969 5.064579 CGATGCATTGTGATACACCAAAGTA 59.935 40.000 0.00 0.00 32.73 2.24
2762 2970 4.142622 CGATGCATTGTGATACACCAAAGT 60.143 41.667 0.00 0.00 32.73 2.66
2763 2971 4.142622 ACGATGCATTGTGATACACCAAAG 60.143 41.667 19.06 0.00 32.73 2.77
2764 2972 3.755905 ACGATGCATTGTGATACACCAAA 59.244 39.130 19.06 0.00 32.73 3.28
2765 2973 3.342719 ACGATGCATTGTGATACACCAA 58.657 40.909 19.06 0.00 32.73 3.67
2766 2974 2.984562 ACGATGCATTGTGATACACCA 58.015 42.857 19.06 0.00 32.73 4.17
2767 2975 5.478233 TTTACGATGCATTGTGATACACC 57.522 39.130 26.87 0.00 32.73 4.16
2768 2976 7.969387 AATTTTACGATGCATTGTGATACAC 57.031 32.000 26.87 0.00 34.56 2.90
2769 2977 7.700234 GGAAATTTTACGATGCATTGTGATACA 59.300 33.333 26.87 6.13 0.00 2.29
2770 2978 7.167468 GGGAAATTTTACGATGCATTGTGATAC 59.833 37.037 26.87 14.81 0.00 2.24
2771 2979 7.148000 TGGGAAATTTTACGATGCATTGTGATA 60.148 33.333 26.87 15.64 0.00 2.15
2772 2980 6.042143 GGGAAATTTTACGATGCATTGTGAT 58.958 36.000 26.87 15.66 0.00 3.06
2773 2981 5.047731 TGGGAAATTTTACGATGCATTGTGA 60.048 36.000 26.87 17.76 0.00 3.58
2774 2982 5.167121 TGGGAAATTTTACGATGCATTGTG 58.833 37.500 26.87 10.91 0.00 3.33
2775 2983 5.398603 TGGGAAATTTTACGATGCATTGT 57.601 34.783 22.92 22.92 0.00 2.71
2776 2984 6.907206 AATGGGAAATTTTACGATGCATTG 57.093 33.333 12.66 12.66 0.00 2.82
2777 2985 9.612066 AAATAATGGGAAATTTTACGATGCATT 57.388 25.926 0.00 0.00 0.00 3.56
2787 2995 9.952030 AACCAACGATAAATAATGGGAAATTTT 57.048 25.926 0.00 0.00 35.44 1.82
2788 2996 9.377312 CAACCAACGATAAATAATGGGAAATTT 57.623 29.630 0.00 0.00 35.44 1.82
2789 2997 7.984617 CCAACCAACGATAAATAATGGGAAATT 59.015 33.333 0.00 0.00 35.44 1.82
2790 2998 7.418483 CCCAACCAACGATAAATAATGGGAAAT 60.418 37.037 0.67 0.00 46.32 2.17
2791 2999 6.127310 CCCAACCAACGATAAATAATGGGAAA 60.127 38.462 0.67 0.00 46.32 3.13
2792 3000 5.361285 CCCAACCAACGATAAATAATGGGAA 59.639 40.000 0.67 0.00 46.32 3.97
2793 3001 4.890581 CCCAACCAACGATAAATAATGGGA 59.109 41.667 0.67 0.00 46.32 4.37
2794 3002 4.890581 TCCCAACCAACGATAAATAATGGG 59.109 41.667 0.00 0.00 45.07 4.00
2795 3003 6.264292 TGATCCCAACCAACGATAAATAATGG 59.736 38.462 0.00 0.00 37.19 3.16
2796 3004 7.138736 GTGATCCCAACCAACGATAAATAATG 58.861 38.462 0.00 0.00 0.00 1.90
2799 3007 5.587043 GTGTGATCCCAACCAACGATAAATA 59.413 40.000 0.00 0.00 0.00 1.40
2808 3016 2.174639 ACAGAAGTGTGATCCCAACCAA 59.825 45.455 0.00 0.00 34.75 3.67
2811 3019 3.058914 CGAAACAGAAGTGTGATCCCAAC 60.059 47.826 0.00 0.00 36.84 3.77
2815 3023 3.040147 TCCGAAACAGAAGTGTGATCC 57.960 47.619 0.00 0.00 36.84 3.36
2819 3027 7.827819 TCTTATATTCCGAAACAGAAGTGTG 57.172 36.000 0.00 0.00 36.84 3.82
2843 3052 9.661563 ATTTGACTTGCATGAAAATCAATACAT 57.338 25.926 10.99 0.00 0.00 2.29
2848 3057 8.123575 CACAAATTTGACTTGCATGAAAATCAA 58.876 29.630 24.64 6.20 0.00 2.57
2849 3058 7.280428 ACACAAATTTGACTTGCATGAAAATCA 59.720 29.630 24.64 0.00 0.00 2.57
2855 3064 6.747125 ACATACACAAATTTGACTTGCATGA 58.253 32.000 24.64 2.20 0.00 3.07
2856 3065 7.410800 AACATACACAAATTTGACTTGCATG 57.589 32.000 24.64 18.48 0.00 4.06
2857 3066 7.710044 TCAAACATACACAAATTTGACTTGCAT 59.290 29.630 24.64 6.22 36.42 3.96
2963 6404 9.209048 ACCAATATCTACAGTACCAAATCTGTA 57.791 33.333 0.00 0.00 43.39 2.74
3047 6492 7.040340 TGCCTTCGTTCCAAAATATTAAGTGAA 60.040 33.333 0.00 0.00 0.00 3.18
3048 6493 6.431543 TGCCTTCGTTCCAAAATATTAAGTGA 59.568 34.615 0.00 0.00 0.00 3.41
3054 6499 5.944007 ACTACTGCCTTCGTTCCAAAATATT 59.056 36.000 0.00 0.00 0.00 1.28
3066 6511 2.408704 CGTTCAGAAACTACTGCCTTCG 59.591 50.000 0.00 0.00 37.75 3.79
3067 6512 3.650139 TCGTTCAGAAACTACTGCCTTC 58.350 45.455 0.00 0.00 37.75 3.46
3068 6513 3.746045 TCGTTCAGAAACTACTGCCTT 57.254 42.857 0.00 0.00 37.75 4.35
3072 6517 6.311445 ACATAGCATTCGTTCAGAAACTACTG 59.689 38.462 0.00 0.00 42.91 2.74
3088 6533 0.532862 CCCTTCGGCGACATAGCATT 60.533 55.000 10.16 0.00 39.27 3.56
3126 6571 1.953559 TTCGCTCATGCACCTTATCC 58.046 50.000 0.00 0.00 39.64 2.59
3158 6603 7.930325 GGAGACTTAACAAGATGATGATGATGA 59.070 37.037 0.00 0.00 0.00 2.92
3175 6620 6.413129 TCCTAGAGGGTTTAGGAGACTTAA 57.587 41.667 0.00 0.00 41.30 1.85
3179 6624 6.370186 TTTTTCCTAGAGGGTTTAGGAGAC 57.630 41.667 0.00 0.00 45.47 3.36
3224 6672 6.918892 TTTCTTCGAGAGTTTTTGATGTCA 57.081 33.333 0.00 0.00 0.00 3.58
3226 6674 6.183360 ACGTTTTCTTCGAGAGTTTTTGATGT 60.183 34.615 0.00 0.00 0.00 3.06
3227 6675 6.139169 CACGTTTTCTTCGAGAGTTTTTGATG 59.861 38.462 0.00 0.00 0.00 3.07
3229 6677 5.446741 CCACGTTTTCTTCGAGAGTTTTTGA 60.447 40.000 0.00 0.00 0.00 2.69
3230 6678 4.728608 CCACGTTTTCTTCGAGAGTTTTTG 59.271 41.667 0.00 0.00 0.00 2.44
3231 6679 4.201881 CCCACGTTTTCTTCGAGAGTTTTT 60.202 41.667 0.00 0.00 0.00 1.94
3232 6680 3.311596 CCCACGTTTTCTTCGAGAGTTTT 59.688 43.478 0.00 0.00 0.00 2.43
3233 6681 2.870411 CCCACGTTTTCTTCGAGAGTTT 59.130 45.455 0.00 0.00 0.00 2.66
3234 6682 2.101917 TCCCACGTTTTCTTCGAGAGTT 59.898 45.455 0.00 0.00 0.00 3.01
3235 6683 1.684983 TCCCACGTTTTCTTCGAGAGT 59.315 47.619 0.00 0.00 0.00 3.24
3236 6684 2.329379 CTCCCACGTTTTCTTCGAGAG 58.671 52.381 0.00 0.00 0.00 3.20
3237 6685 1.604693 GCTCCCACGTTTTCTTCGAGA 60.605 52.381 0.00 0.00 0.00 4.04
3238 6686 0.790814 GCTCCCACGTTTTCTTCGAG 59.209 55.000 0.00 0.00 0.00 4.04
3239 6687 0.105224 TGCTCCCACGTTTTCTTCGA 59.895 50.000 0.00 0.00 0.00 3.71
3240 6688 0.941542 TTGCTCCCACGTTTTCTTCG 59.058 50.000 0.00 0.00 0.00 3.79
3241 6689 3.372060 CTTTTGCTCCCACGTTTTCTTC 58.628 45.455 0.00 0.00 0.00 2.87
3244 6692 1.679153 TCCTTTTGCTCCCACGTTTTC 59.321 47.619 0.00 0.00 0.00 2.29
3245 6693 1.681264 CTCCTTTTGCTCCCACGTTTT 59.319 47.619 0.00 0.00 0.00 2.43
3246 6694 1.133915 TCTCCTTTTGCTCCCACGTTT 60.134 47.619 0.00 0.00 0.00 3.60
3247 6695 0.472471 TCTCCTTTTGCTCCCACGTT 59.528 50.000 0.00 0.00 0.00 3.99
3248 6696 0.472471 TTCTCCTTTTGCTCCCACGT 59.528 50.000 0.00 0.00 0.00 4.49
3249 6697 1.266989 GTTTCTCCTTTTGCTCCCACG 59.733 52.381 0.00 0.00 0.00 4.94
3263 6711 8.088981 ACGGGTATTATGATATGTCAGTTTCTC 58.911 37.037 0.00 0.00 37.87 2.87
3296 6744 8.950007 TCTTGGAAGGTTTTTAATGAGGTAAT 57.050 30.769 0.00 0.00 0.00 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.