Multiple sequence alignment - TraesCS4B01G302000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G302000 chr4B 100.000 3919 0 0 1 3919 588593171 588589253 0.000000e+00 7238.0
1 TraesCS4B01G302000 chr4B 88.011 1443 133 19 1071 2498 588844711 588846128 0.000000e+00 1670.0
2 TraesCS4B01G302000 chr4B 87.398 1476 145 28 1074 2541 588693948 588692506 0.000000e+00 1657.0
3 TraesCS4B01G302000 chr4B 86.221 987 130 3 1565 2548 663985666 663986649 0.000000e+00 1064.0
4 TraesCS4B01G302000 chr4B 95.429 175 8 0 2594 2768 591315466 591315292 2.980000e-71 279.0
5 TraesCS4B01G302000 chr4B 98.925 93 1 0 3295 3387 551074517 551074609 2.420000e-37 167.0
6 TraesCS4B01G302000 chr4B 95.146 103 5 0 3285 3387 130614772 130614874 3.130000e-36 163.0
7 TraesCS4B01G302000 chr4B 96.040 101 3 1 3288 3387 174042084 174041984 3.130000e-36 163.0
8 TraesCS4B01G302000 chr4B 95.098 102 5 0 3286 3387 59190430 59190329 1.130000e-35 161.0
9 TraesCS4B01G302000 chr4B 95.098 102 5 0 3286 3387 73615039 73615140 1.130000e-35 161.0
10 TraesCS4B01G302000 chr4B 94.175 103 6 0 3285 3387 664044915 664044813 1.460000e-34 158.0
11 TraesCS4B01G302000 chr4A 91.128 2243 142 27 390 2594 2773910 2776133 0.000000e+00 2987.0
12 TraesCS4B01G302000 chr4A 89.785 1439 117 14 1074 2501 2556276 2554857 0.000000e+00 1816.0
13 TraesCS4B01G302000 chr4A 87.150 1502 163 23 1050 2541 2737406 2738887 0.000000e+00 1677.0
14 TraesCS4B01G302000 chr4A 88.012 342 36 5 2766 3104 2776124 2776463 2.190000e-107 399.0
15 TraesCS4B01G302000 chr4A 93.040 273 17 2 1 273 2773227 2773497 7.890000e-107 398.0
16 TraesCS4B01G302000 chr4A 96.078 102 4 0 3286 3387 702119024 702119125 2.420000e-37 167.0
17 TraesCS4B01G302000 chr4D 94.145 1964 96 8 632 2593 468863614 468861668 0.000000e+00 2972.0
18 TraesCS4B01G302000 chr4D 89.944 1432 119 17 1071 2498 469164104 469165514 0.000000e+00 1823.0
19 TraesCS4B01G302000 chr4D 88.383 1472 147 18 1050 2512 468899892 468898436 0.000000e+00 1749.0
20 TraesCS4B01G302000 chr4D 86.105 950 123 8 1565 2508 507006045 507006991 0.000000e+00 1014.0
21 TraesCS4B01G302000 chr4D 89.808 520 37 7 2766 3282 468861676 468861170 0.000000e+00 652.0
22 TraesCS4B01G302000 chr4D 95.202 396 15 4 1 396 468888902 468888511 1.200000e-174 623.0
23 TraesCS4B01G302000 chr4D 84.151 265 15 4 395 639 468888337 468888080 8.470000e-57 231.0
24 TraesCS4B01G302000 chr4D 96.703 91 3 0 3294 3384 8275068 8274978 6.780000e-33 152.0
25 TraesCS4B01G302000 chr4D 96.591 88 3 0 3300 3387 488711591 488711504 3.160000e-31 147.0
26 TraesCS4B01G302000 chr4D 94.318 88 5 0 3300 3387 6227268 6227181 6.830000e-28 135.0
27 TraesCS4B01G302000 chr4D 93.407 91 6 0 3297 3387 42175930 42176020 6.830000e-28 135.0
28 TraesCS4B01G302000 chr4D 94.318 88 5 0 3300 3387 42191761 42191848 6.830000e-28 135.0
29 TraesCS4B01G302000 chr7B 95.185 540 13 7 3387 3919 98687814 98688347 0.000000e+00 841.0
30 TraesCS4B01G302000 chr7B 93.911 542 11 7 3387 3919 64993034 64993562 0.000000e+00 798.0
31 TraesCS4B01G302000 chr7B 91.481 540 29 8 3387 3919 90601203 90600674 0.000000e+00 726.0
32 TraesCS4B01G302000 chr7B 94.413 179 10 0 2587 2765 18504736 18504558 3.860000e-70 276.0
33 TraesCS4B01G302000 chr7B 92.593 189 11 3 2585 2772 727383608 727383794 6.450000e-68 268.0
34 TraesCS4B01G302000 chr7B 98.058 103 1 1 3285 3387 624711359 624711460 1.120000e-40 178.0
35 TraesCS4B01G302000 chr7B 97.980 99 2 0 3289 3387 13321660 13321758 5.210000e-39 172.0
36 TraesCS4B01G302000 chr3B 94.465 542 12 7 3387 3919 284155049 284154517 0.000000e+00 819.0
37 TraesCS4B01G302000 chr3B 84.524 420 59 3 1074 1492 367121693 367121279 1.010000e-110 411.0
38 TraesCS4B01G302000 chr3B 92.147 191 14 1 2587 2776 307971500 307971690 6.450000e-68 268.0
39 TraesCS4B01G302000 chr3B 98.058 103 2 0 3285 3387 321772634 321772532 3.110000e-41 180.0
40 TraesCS4B01G302000 chr3B 98.058 103 2 0 3285 3387 657787659 657787557 3.110000e-41 180.0
41 TraesCS4B01G302000 chr3B 97.087 103 3 0 3285 3387 416035330 416035432 1.450000e-39 174.0
42 TraesCS4B01G302000 chr1B 94.465 542 12 6 3387 3919 147595599 147596131 0.000000e+00 819.0
43 TraesCS4B01G302000 chr1B 91.867 541 19 7 3387 3919 623081580 623081057 0.000000e+00 732.0
44 TraesCS4B01G302000 chr1B 80.448 491 51 27 3462 3919 31942410 31941932 2.260000e-87 333.0
45 TraesCS4B01G302000 chr1B 93.085 188 13 0 2588 2775 25900662 25900475 3.860000e-70 276.0
46 TraesCS4B01G302000 chr1B 91.327 196 13 3 2585 2778 61612035 61612228 8.350000e-67 265.0
47 TraesCS4B01G302000 chr1B 98.020 101 2 0 3287 3387 25227762 25227662 4.020000e-40 176.0
48 TraesCS4B01G302000 chr1B 96.078 102 4 0 3286 3387 137620793 137620692 2.420000e-37 167.0
49 TraesCS4B01G302000 chr2B 94.270 541 12 6 3387 3919 82594564 82595093 0.000000e+00 809.0
50 TraesCS4B01G302000 chr2B 92.553 188 13 1 2589 2775 765569971 765570158 6.450000e-68 268.0
51 TraesCS4B01G302000 chr2B 97.087 103 3 0 3285 3387 394116222 394116120 1.450000e-39 174.0
52 TraesCS4B01G302000 chr5B 93.715 541 16 7 3387 3919 627017951 627018481 0.000000e+00 795.0
53 TraesCS4B01G302000 chr5B 94.433 503 12 7 3424 3919 234353451 234352958 0.000000e+00 760.0
54 TraesCS4B01G302000 chr5B 85.647 425 57 3 1071 1492 636977423 636977846 9.990000e-121 444.0
55 TraesCS4B01G302000 chr5B 90.987 233 7 6 3692 3919 492206888 492206665 6.360000e-78 302.0
56 TraesCS4B01G302000 chr5B 94.915 177 9 0 2589 2765 346616342 346616166 1.070000e-70 278.0
57 TraesCS4B01G302000 chr5B 98.058 103 2 0 3285 3387 56850637 56850739 3.110000e-41 180.0
58 TraesCS4B01G302000 chr5B 97.087 103 3 0 3285 3387 609926081 609926183 1.450000e-39 174.0
59 TraesCS4B01G302000 chr5B 95.146 103 5 0 3285 3387 699779019 699778917 3.130000e-36 163.0
60 TraesCS4B01G302000 chr6B 92.891 211 11 4 3711 3919 66772209 66772001 1.770000e-78 303.0
61 TraesCS4B01G302000 chr6B 97.000 100 3 0 3288 3387 611352271 611352172 6.730000e-38 169.0
62 TraesCS4B01G302000 chr6B 91.304 115 9 1 3273 3387 195275187 195275074 5.240000e-34 156.0
63 TraesCS4B01G302000 chr7A 80.645 372 69 1 1076 1444 101432982 101433353 6.410000e-73 285.0
64 TraesCS4B01G302000 chr2D 93.048 187 10 3 2589 2773 589508792 589508607 1.790000e-68 270.0
65 TraesCS4B01G302000 chr2D 96.875 96 3 0 3292 3387 449715701 449715606 1.130000e-35 161.0
66 TraesCS4B01G302000 chrUn 96.117 103 4 0 3285 3387 191164984 191165086 6.730000e-38 169.0
67 TraesCS4B01G302000 chrUn 98.889 90 1 0 3298 3387 51422840 51422929 1.130000e-35 161.0
68 TraesCS4B01G302000 chrUn 93.939 99 6 0 3289 3387 264393671 264393769 2.440000e-32 150.0
69 TraesCS4B01G302000 chrUn 95.181 83 4 0 3305 3387 274643738 274643656 8.840000e-27 132.0
70 TraesCS4B01G302000 chrUn 91.667 96 7 1 3292 3387 398694308 398694402 8.840000e-27 132.0
71 TraesCS4B01G302000 chrUn 94.048 84 5 0 3304 3387 378207928 378207845 1.140000e-25 128.0
72 TraesCS4B01G302000 chrUn 94.048 84 5 0 3304 3387 431967251 431967168 1.140000e-25 128.0
73 TraesCS4B01G302000 chrUn 91.398 93 6 2 3296 3387 443024814 443024905 4.110000e-25 126.0
74 TraesCS4B01G302000 chrUn 92.857 84 6 0 3304 3387 48219123 48219206 5.320000e-24 122.0
75 TraesCS4B01G302000 chr2A 96.939 98 3 0 3290 3387 44796557 44796654 8.710000e-37 165.0
76 TraesCS4B01G302000 chr7D 94.175 103 6 0 3285 3387 612427395 612427293 1.460000e-34 158.0
77 TraesCS4B01G302000 chr6D 97.802 91 2 0 3297 3387 18144794 18144884 1.460000e-34 158.0
78 TraesCS4B01G302000 chr6D 95.833 96 4 0 3292 3387 429366256 429366161 5.240000e-34 156.0
79 TraesCS4B01G302000 chr6D 92.929 99 7 0 3289 3387 433355519 433355617 1.130000e-30 145.0
80 TraesCS4B01G302000 chr5D 95.833 96 4 0 3292 3387 465701564 465701659 5.240000e-34 156.0
81 TraesCS4B01G302000 chr6A 93.939 99 6 0 3289 3387 611495862 611495764 2.440000e-32 150.0
82 TraesCS4B01G302000 chr1A 94.737 95 5 0 3293 3387 100419992 100419898 8.770000e-32 148.0
83 TraesCS4B01G302000 chr1D 94.505 91 5 0 3297 3387 268934906 268934816 1.470000e-29 141.0
84 TraesCS4B01G302000 chr5A 83.784 111 9 4 1076 1186 702852841 702852740 3.220000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G302000 chr4B 588589253 588593171 3918 True 7238.000000 7238 100.000000 1 3919 1 chr4B.!!$R3 3918
1 TraesCS4B01G302000 chr4B 588844711 588846128 1417 False 1670.000000 1670 88.011000 1071 2498 1 chr4B.!!$F4 1427
2 TraesCS4B01G302000 chr4B 588692506 588693948 1442 True 1657.000000 1657 87.398000 1074 2541 1 chr4B.!!$R4 1467
3 TraesCS4B01G302000 chr4B 663985666 663986649 983 False 1064.000000 1064 86.221000 1565 2548 1 chr4B.!!$F5 983
4 TraesCS4B01G302000 chr4A 2554857 2556276 1419 True 1816.000000 1816 89.785000 1074 2501 1 chr4A.!!$R1 1427
5 TraesCS4B01G302000 chr4A 2737406 2738887 1481 False 1677.000000 1677 87.150000 1050 2541 1 chr4A.!!$F1 1491
6 TraesCS4B01G302000 chr4A 2773227 2776463 3236 False 1261.333333 2987 90.726667 1 3104 3 chr4A.!!$F3 3103
7 TraesCS4B01G302000 chr4D 469164104 469165514 1410 False 1823.000000 1823 89.944000 1071 2498 1 chr4D.!!$F3 1427
8 TraesCS4B01G302000 chr4D 468861170 468863614 2444 True 1812.000000 2972 91.976500 632 3282 2 chr4D.!!$R5 2650
9 TraesCS4B01G302000 chr4D 468898436 468899892 1456 True 1749.000000 1749 88.383000 1050 2512 1 chr4D.!!$R3 1462
10 TraesCS4B01G302000 chr4D 507006045 507006991 946 False 1014.000000 1014 86.105000 1565 2508 1 chr4D.!!$F4 943
11 TraesCS4B01G302000 chr4D 468888080 468888902 822 True 427.000000 623 89.676500 1 639 2 chr4D.!!$R6 638
12 TraesCS4B01G302000 chr7B 98687814 98688347 533 False 841.000000 841 95.185000 3387 3919 1 chr7B.!!$F3 532
13 TraesCS4B01G302000 chr7B 64993034 64993562 528 False 798.000000 798 93.911000 3387 3919 1 chr7B.!!$F2 532
14 TraesCS4B01G302000 chr7B 90600674 90601203 529 True 726.000000 726 91.481000 3387 3919 1 chr7B.!!$R2 532
15 TraesCS4B01G302000 chr3B 284154517 284155049 532 True 819.000000 819 94.465000 3387 3919 1 chr3B.!!$R1 532
16 TraesCS4B01G302000 chr1B 147595599 147596131 532 False 819.000000 819 94.465000 3387 3919 1 chr1B.!!$F2 532
17 TraesCS4B01G302000 chr1B 623081057 623081580 523 True 732.000000 732 91.867000 3387 3919 1 chr1B.!!$R5 532
18 TraesCS4B01G302000 chr2B 82594564 82595093 529 False 809.000000 809 94.270000 3387 3919 1 chr2B.!!$F1 532
19 TraesCS4B01G302000 chr5B 627017951 627018481 530 False 795.000000 795 93.715000 3387 3919 1 chr5B.!!$F3 532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
459 841 1.006086 CTATGCGAACGTGGATTGCA 58.994 50.0 3.21 3.21 40.23 4.08 F
1618 2057 0.250295 GCTCAACAGGTACAGGTGCA 60.250 55.0 0.00 0.00 0.00 4.57 F
2248 2698 0.545548 AAACGGGGAAGAGCTCCTCT 60.546 55.0 10.93 0.00 43.57 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2238 2688 2.826738 GCCGTCGAGAGGAGCTCT 60.827 66.667 14.64 0.0 44.28 4.09 R
2679 3136 0.032952 TACAACTCACGTCAGCCCAC 59.967 55.000 0.00 0.0 0.00 4.61 R
3805 4273 0.323360 TGAAAAGGCGATCCAAGGGG 60.323 55.000 0.00 0.0 33.74 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 95 1.244019 ACGCCATTTGAGGAGCAACC 61.244 55.000 0.00 0.00 35.91 3.77
104 105 1.133790 GAGGAGCAACCAATCATGCAC 59.866 52.381 0.00 0.00 44.95 4.57
153 154 3.113322 CTCAATGAGCCGATGCATTTTG 58.887 45.455 0.00 0.00 41.13 2.44
184 185 6.042143 TCAAAGCACAAGAAAAAGGATTGAC 58.958 36.000 0.00 0.00 0.00 3.18
271 272 4.570772 CGAAAGGAGACAAACTGAGAAACA 59.429 41.667 0.00 0.00 0.00 2.83
272 273 5.064707 CGAAAGGAGACAAACTGAGAAACAA 59.935 40.000 0.00 0.00 0.00 2.83
273 274 6.442513 AAAGGAGACAAACTGAGAAACAAG 57.557 37.500 0.00 0.00 0.00 3.16
274 275 5.359194 AGGAGACAAACTGAGAAACAAGA 57.641 39.130 0.00 0.00 0.00 3.02
275 276 5.934781 AGGAGACAAACTGAGAAACAAGAT 58.065 37.500 0.00 0.00 0.00 2.40
276 277 7.067496 AGGAGACAAACTGAGAAACAAGATA 57.933 36.000 0.00 0.00 0.00 1.98
277 278 7.509546 AGGAGACAAACTGAGAAACAAGATAA 58.490 34.615 0.00 0.00 0.00 1.75
278 279 7.993183 AGGAGACAAACTGAGAAACAAGATAAA 59.007 33.333 0.00 0.00 0.00 1.40
279 280 8.621286 GGAGACAAACTGAGAAACAAGATAAAA 58.379 33.333 0.00 0.00 0.00 1.52
282 283 9.237846 GACAAACTGAGAAACAAGATAAAAAGG 57.762 33.333 0.00 0.00 0.00 3.11
283 284 8.197439 ACAAACTGAGAAACAAGATAAAAAGGG 58.803 33.333 0.00 0.00 0.00 3.95
284 285 6.332735 ACTGAGAAACAAGATAAAAAGGGC 57.667 37.500 0.00 0.00 0.00 5.19
285 286 5.833131 ACTGAGAAACAAGATAAAAAGGGCA 59.167 36.000 0.00 0.00 0.00 5.36
286 287 6.323739 ACTGAGAAACAAGATAAAAAGGGCAA 59.676 34.615 0.00 0.00 0.00 4.52
287 288 7.118496 TGAGAAACAAGATAAAAAGGGCAAA 57.882 32.000 0.00 0.00 0.00 3.68
288 289 6.983890 TGAGAAACAAGATAAAAAGGGCAAAC 59.016 34.615 0.00 0.00 0.00 2.93
289 290 6.883744 AGAAACAAGATAAAAAGGGCAAACA 58.116 32.000 0.00 0.00 0.00 2.83
290 291 7.334858 AGAAACAAGATAAAAAGGGCAAACAA 58.665 30.769 0.00 0.00 0.00 2.83
291 292 6.918892 AACAAGATAAAAAGGGCAAACAAC 57.081 33.333 0.00 0.00 0.00 3.32
292 293 5.983540 ACAAGATAAAAAGGGCAAACAACA 58.016 33.333 0.00 0.00 0.00 3.33
293 294 6.048509 ACAAGATAAAAAGGGCAAACAACAG 58.951 36.000 0.00 0.00 0.00 3.16
294 295 6.127196 ACAAGATAAAAAGGGCAAACAACAGA 60.127 34.615 0.00 0.00 0.00 3.41
295 296 6.478512 AGATAAAAAGGGCAAACAACAGAA 57.521 33.333 0.00 0.00 0.00 3.02
296 297 7.066307 AGATAAAAAGGGCAAACAACAGAAT 57.934 32.000 0.00 0.00 0.00 2.40
297 298 7.508687 AGATAAAAAGGGCAAACAACAGAATT 58.491 30.769 0.00 0.00 0.00 2.17
298 299 7.657354 AGATAAAAAGGGCAAACAACAGAATTC 59.343 33.333 0.00 0.00 0.00 2.17
299 300 5.357742 AAAAGGGCAAACAACAGAATTCT 57.642 34.783 0.88 0.88 0.00 2.40
300 301 6.478512 AAAAGGGCAAACAACAGAATTCTA 57.521 33.333 7.86 0.00 0.00 2.10
301 302 6.478512 AAAGGGCAAACAACAGAATTCTAA 57.521 33.333 7.86 0.00 0.00 2.10
302 303 6.478512 AAGGGCAAACAACAGAATTCTAAA 57.521 33.333 7.86 0.00 0.00 1.85
303 304 6.089249 AGGGCAAACAACAGAATTCTAAAG 57.911 37.500 7.86 3.28 0.00 1.85
304 305 5.011023 AGGGCAAACAACAGAATTCTAAAGG 59.989 40.000 7.86 0.00 0.00 3.11
305 306 5.010617 GGGCAAACAACAGAATTCTAAAGGA 59.989 40.000 7.86 0.00 0.00 3.36
306 307 6.462347 GGGCAAACAACAGAATTCTAAAGGAA 60.462 38.462 7.86 0.00 38.41 3.36
307 308 6.983890 GGCAAACAACAGAATTCTAAAGGAAA 59.016 34.615 7.86 0.00 37.49 3.13
308 309 7.042725 GGCAAACAACAGAATTCTAAAGGAAAC 60.043 37.037 7.86 0.00 37.49 2.78
456 838 1.665679 CAAGCTATGCGAACGTGGATT 59.334 47.619 0.00 0.00 0.00 3.01
459 841 1.006086 CTATGCGAACGTGGATTGCA 58.994 50.000 3.21 3.21 40.23 4.08
460 842 1.599071 CTATGCGAACGTGGATTGCAT 59.401 47.619 15.79 15.79 46.94 3.96
501 903 7.122799 TCAATATAGAGGCGCTAACACTCATAT 59.877 37.037 7.64 8.16 33.76 1.78
508 910 6.467677 AGGCGCTAACACTCATATAATTGAT 58.532 36.000 7.64 0.00 0.00 2.57
519 921 7.230108 CACTCATATAATTGATGCCACTCCTTT 59.770 37.037 0.00 0.00 0.00 3.11
545 947 5.868454 AGGCCAGAAATGCAAATAAGTTTT 58.132 33.333 5.01 0.00 0.00 2.43
620 1022 2.033424 GCTTCAACCTTCCACAGTGTTC 59.967 50.000 0.00 0.00 0.00 3.18
621 1023 2.341846 TCAACCTTCCACAGTGTTCC 57.658 50.000 0.00 0.00 0.00 3.62
656 1058 2.034076 GTTCGCAGCACAAGTTTAACG 58.966 47.619 0.00 0.00 0.00 3.18
739 1143 3.453717 TGCCTTATCAGTTGCTCTCATCT 59.546 43.478 0.00 0.00 0.00 2.90
746 1150 2.922387 CAGTTGCTCTCATCTTGTCTCG 59.078 50.000 0.00 0.00 0.00 4.04
750 1154 2.558359 TGCTCTCATCTTGTCTCGTGAA 59.442 45.455 0.00 0.00 0.00 3.18
762 1166 2.476997 GTCTCGTGAAGGAGAAACTTGC 59.523 50.000 4.39 0.00 44.19 4.01
763 1167 2.102420 TCTCGTGAAGGAGAAACTTGCA 59.898 45.455 0.35 0.00 39.99 4.08
784 1189 1.482593 CCCAAGTTCTGCCGACTCTAT 59.517 52.381 0.00 0.00 0.00 1.98
793 1198 3.003378 TCTGCCGACTCTATCAACGTATG 59.997 47.826 0.00 0.00 0.00 2.39
795 1200 2.287668 GCCGACTCTATCAACGTATGCT 60.288 50.000 0.00 0.00 0.00 3.79
811 1216 1.008309 GCTCACGGCTACCTCGATC 60.008 63.158 0.00 0.00 38.06 3.69
1067 1482 3.753797 GCTAGCTAGAAAACACCAGCTTT 59.246 43.478 25.15 0.00 41.50 3.51
1068 1483 4.378874 GCTAGCTAGAAAACACCAGCTTTG 60.379 45.833 25.15 0.00 41.50 2.77
1072 1487 4.555511 GCTAGAAAACACCAGCTTTGTGAG 60.556 45.833 17.73 6.55 37.18 3.51
1422 1837 1.880894 CGCAGACGTTGAGGACCTA 59.119 57.895 0.00 0.00 33.53 3.08
1469 1886 3.308438 ACATGATTTTGCTTCTGCCAC 57.692 42.857 0.00 0.00 38.71 5.01
1531 1962 1.087202 CCGCTGCAACCGCTTATACA 61.087 55.000 0.00 0.00 39.64 2.29
1537 1968 5.063438 CGCTGCAACCGCTTATACAATATAT 59.937 40.000 0.00 0.00 39.64 0.86
1538 1969 6.402118 CGCTGCAACCGCTTATACAATATATT 60.402 38.462 0.00 0.00 39.64 1.28
1618 2057 0.250295 GCTCAACAGGTACAGGTGCA 60.250 55.000 0.00 0.00 0.00 4.57
1731 2170 1.420138 GAGGGAAAGGACTTCACCACA 59.580 52.381 7.45 0.00 38.32 4.17
1753 2192 2.987125 CCCCATTCCTCGACCGTT 59.013 61.111 0.00 0.00 0.00 4.44
1830 2269 2.028484 TTCACGTGTGGAGACGGC 59.972 61.111 16.51 0.00 43.84 5.68
2185 2635 4.350441 TGGCACGCATCGACGACA 62.350 61.111 0.00 0.00 36.70 4.35
2238 2688 2.975799 GCAGACGCAAACGGGGAA 60.976 61.111 0.00 0.00 46.04 3.97
2248 2698 0.545548 AAACGGGGAAGAGCTCCTCT 60.546 55.000 10.93 0.00 43.57 3.69
2446 2897 1.901085 GACCTCTTCATGGCCGTCT 59.099 57.895 0.00 0.00 0.00 4.18
2476 2927 4.069232 TGGCAGCGTTCGAGGAGG 62.069 66.667 0.00 0.00 0.00 4.30
2555 3012 4.437255 GCATGCATGTCATAAAGAACGTGA 60.437 41.667 26.79 0.00 33.19 4.35
2584 3041 9.754382 AAGAAACTGTTCGTTATGTAGTAAAGA 57.246 29.630 0.00 0.00 38.90 2.52
2585 3042 9.754382 AGAAACTGTTCGTTATGTAGTAAAGAA 57.246 29.630 0.00 0.00 38.08 2.52
2588 3045 9.485206 AACTGTTCGTTATGTAGTAAAGAATGT 57.515 29.630 0.00 1.68 40.93 2.71
2589 3046 9.485206 ACTGTTCGTTATGTAGTAAAGAATGTT 57.515 29.630 0.89 0.00 40.93 2.71
2607 3064 9.899226 AAGAATGTTTATCAGTTTTGCTAGAAC 57.101 29.630 0.00 0.00 0.00 3.01
2608 3065 9.289782 AGAATGTTTATCAGTTTTGCTAGAACT 57.710 29.630 0.00 0.00 37.82 3.01
2609 3066 9.548208 GAATGTTTATCAGTTTTGCTAGAACTC 57.452 33.333 0.00 0.00 35.26 3.01
2610 3067 8.621532 ATGTTTATCAGTTTTGCTAGAACTCA 57.378 30.769 0.00 0.00 35.26 3.41
2611 3068 8.621532 TGTTTATCAGTTTTGCTAGAACTCAT 57.378 30.769 0.00 0.00 35.26 2.90
2612 3069 8.721478 TGTTTATCAGTTTTGCTAGAACTCATC 58.279 33.333 0.00 0.00 35.26 2.92
2613 3070 8.940952 GTTTATCAGTTTTGCTAGAACTCATCT 58.059 33.333 0.00 0.00 42.48 2.90
2653 3110 9.693739 TTTGATCTTATTCACCTTTTATAGCCA 57.306 29.630 0.00 0.00 0.00 4.75
2654 3111 9.866655 TTGATCTTATTCACCTTTTATAGCCAT 57.133 29.630 0.00 0.00 0.00 4.40
2655 3112 9.866655 TGATCTTATTCACCTTTTATAGCCATT 57.133 29.630 0.00 0.00 0.00 3.16
2657 3114 9.866655 ATCTTATTCACCTTTTATAGCCATTGA 57.133 29.630 0.00 0.00 0.00 2.57
2658 3115 9.693739 TCTTATTCACCTTTTATAGCCATTGAA 57.306 29.630 0.00 0.00 0.00 2.69
2661 3118 7.716799 TTCACCTTTTATAGCCATTGAATGT 57.283 32.000 4.27 0.00 0.00 2.71
2662 3119 7.099266 TCACCTTTTATAGCCATTGAATGTG 57.901 36.000 4.27 0.00 0.00 3.21
2663 3120 6.889177 TCACCTTTTATAGCCATTGAATGTGA 59.111 34.615 4.27 0.00 0.00 3.58
2664 3121 7.560991 TCACCTTTTATAGCCATTGAATGTGAT 59.439 33.333 4.27 0.00 0.00 3.06
2665 3122 7.650504 CACCTTTTATAGCCATTGAATGTGATG 59.349 37.037 4.27 0.00 0.00 3.07
2666 3123 6.643770 CCTTTTATAGCCATTGAATGTGATGC 59.356 38.462 4.27 0.37 0.00 3.91
2667 3124 6.964807 TTTATAGCCATTGAATGTGATGCT 57.035 33.333 10.61 10.61 0.00 3.79
2668 3125 8.462589 TTTTATAGCCATTGAATGTGATGCTA 57.537 30.769 13.54 13.54 0.00 3.49
2669 3126 8.640063 TTTATAGCCATTGAATGTGATGCTAT 57.360 30.769 21.62 21.62 32.56 2.97
2670 3127 9.737844 TTTATAGCCATTGAATGTGATGCTATA 57.262 29.630 20.23 20.23 31.46 1.31
2671 3128 9.737844 TTATAGCCATTGAATGTGATGCTATAA 57.262 29.630 25.56 25.56 35.49 0.98
2672 3129 6.570672 AGCCATTGAATGTGATGCTATAAG 57.429 37.500 4.27 0.00 0.00 1.73
2673 3130 6.301486 AGCCATTGAATGTGATGCTATAAGA 58.699 36.000 4.27 0.00 0.00 2.10
2674 3131 6.946583 AGCCATTGAATGTGATGCTATAAGAT 59.053 34.615 4.27 0.00 0.00 2.40
2675 3132 7.027760 GCCATTGAATGTGATGCTATAAGATG 58.972 38.462 4.27 0.00 0.00 2.90
2676 3133 7.027760 CCATTGAATGTGATGCTATAAGATGC 58.972 38.462 4.27 0.00 0.00 3.91
2677 3134 5.851047 TGAATGTGATGCTATAAGATGCG 57.149 39.130 0.00 0.00 0.00 4.73
2678 3135 5.299949 TGAATGTGATGCTATAAGATGCGT 58.700 37.500 0.00 0.00 0.00 5.24
2679 3136 5.178067 TGAATGTGATGCTATAAGATGCGTG 59.822 40.000 0.00 0.00 0.00 5.34
2680 3137 4.058721 TGTGATGCTATAAGATGCGTGT 57.941 40.909 0.00 0.00 0.00 4.49
2681 3138 3.803778 TGTGATGCTATAAGATGCGTGTG 59.196 43.478 0.00 0.00 0.00 3.82
2682 3139 3.185188 GTGATGCTATAAGATGCGTGTGG 59.815 47.826 0.00 0.00 0.00 4.17
2683 3140 2.238942 TGCTATAAGATGCGTGTGGG 57.761 50.000 0.00 0.00 0.00 4.61
2684 3141 0.868406 GCTATAAGATGCGTGTGGGC 59.132 55.000 0.00 0.00 0.00 5.36
2685 3142 1.541233 GCTATAAGATGCGTGTGGGCT 60.541 52.381 0.00 0.00 0.00 5.19
2686 3143 2.138320 CTATAAGATGCGTGTGGGCTG 58.862 52.381 0.00 0.00 0.00 4.85
2687 3144 0.541392 ATAAGATGCGTGTGGGCTGA 59.459 50.000 0.00 0.00 0.00 4.26
2688 3145 0.391130 TAAGATGCGTGTGGGCTGAC 60.391 55.000 0.00 0.00 0.00 3.51
2689 3146 3.490759 GATGCGTGTGGGCTGACG 61.491 66.667 0.00 0.00 38.63 4.35
2690 3147 4.314440 ATGCGTGTGGGCTGACGT 62.314 61.111 0.00 0.00 37.89 4.34
2692 3149 4.961511 GCGTGTGGGCTGACGTGA 62.962 66.667 0.00 0.00 37.89 4.35
2693 3150 2.734723 CGTGTGGGCTGACGTGAG 60.735 66.667 0.00 0.00 0.00 3.51
2709 3166 4.439057 ACGTGAGTTGTATCTGTTGTTGT 58.561 39.130 0.00 0.00 46.40 3.32
2710 3167 4.873827 ACGTGAGTTGTATCTGTTGTTGTT 59.126 37.500 0.00 0.00 46.40 2.83
2711 3168 5.353123 ACGTGAGTTGTATCTGTTGTTGTTT 59.647 36.000 0.00 0.00 46.40 2.83
2712 3169 6.128117 ACGTGAGTTGTATCTGTTGTTGTTTT 60.128 34.615 0.00 0.00 46.40 2.43
2713 3170 6.410914 CGTGAGTTGTATCTGTTGTTGTTTTC 59.589 38.462 0.00 0.00 0.00 2.29
2714 3171 7.247728 GTGAGTTGTATCTGTTGTTGTTTTCA 58.752 34.615 0.00 0.00 0.00 2.69
2715 3172 7.753132 GTGAGTTGTATCTGTTGTTGTTTTCAA 59.247 33.333 0.00 0.00 37.48 2.69
2716 3173 8.300286 TGAGTTGTATCTGTTGTTGTTTTCAAA 58.700 29.630 0.00 0.00 41.76 2.69
2717 3174 8.687824 AGTTGTATCTGTTGTTGTTTTCAAAG 57.312 30.769 0.00 0.00 41.76 2.77
2718 3175 8.303876 AGTTGTATCTGTTGTTGTTTTCAAAGT 58.696 29.630 0.00 0.00 41.76 2.66
2719 3176 8.372521 GTTGTATCTGTTGTTGTTTTCAAAGTG 58.627 33.333 0.00 0.00 41.76 3.16
2720 3177 7.821652 TGTATCTGTTGTTGTTTTCAAAGTGA 58.178 30.769 0.00 0.00 41.76 3.41
2721 3178 8.300286 TGTATCTGTTGTTGTTTTCAAAGTGAA 58.700 29.630 0.00 0.00 41.76 3.18
2722 3179 9.301153 GTATCTGTTGTTGTTTTCAAAGTGAAT 57.699 29.630 0.00 0.00 41.76 2.57
2723 3180 7.579589 TCTGTTGTTGTTTTCAAAGTGAATG 57.420 32.000 0.00 0.00 41.76 2.67
2724 3181 7.374272 TCTGTTGTTGTTTTCAAAGTGAATGA 58.626 30.769 0.00 0.00 41.76 2.57
2725 3182 7.541783 TCTGTTGTTGTTTTCAAAGTGAATGAG 59.458 33.333 0.00 0.00 41.76 2.90
2726 3183 7.374272 TGTTGTTGTTTTCAAAGTGAATGAGA 58.626 30.769 0.00 0.00 41.76 3.27
2727 3184 7.328249 TGTTGTTGTTTTCAAAGTGAATGAGAC 59.672 33.333 0.00 0.00 41.76 3.36
2728 3185 6.918626 TGTTGTTTTCAAAGTGAATGAGACA 58.081 32.000 0.00 0.00 41.76 3.41
2729 3186 7.374272 TGTTGTTTTCAAAGTGAATGAGACAA 58.626 30.769 0.00 0.00 41.76 3.18
2730 3187 7.869937 TGTTGTTTTCAAAGTGAATGAGACAAA 59.130 29.630 8.24 0.00 41.76 2.83
2731 3188 8.707839 GTTGTTTTCAAAGTGAATGAGACAAAA 58.292 29.630 8.24 0.00 41.76 2.44
2732 3189 9.434420 TTGTTTTCAAAGTGAATGAGACAAAAT 57.566 25.926 0.00 0.00 36.11 1.82
2733 3190 9.434420 TGTTTTCAAAGTGAATGAGACAAAATT 57.566 25.926 0.00 0.00 36.11 1.82
2764 3221 8.871629 TCATCTAGATGAGTTCTAGGTATTCC 57.128 38.462 27.93 0.00 44.99 3.01
2979 3438 4.944048 ACAAAGTGGTCATGCCTTTTTAC 58.056 39.130 7.54 0.00 38.35 2.01
3146 3606 5.835257 TCAGCAAATGAAACTGGAGAAAAG 58.165 37.500 0.00 0.00 34.02 2.27
3149 3609 6.757947 CAGCAAATGAAACTGGAGAAAAGAAA 59.242 34.615 0.00 0.00 0.00 2.52
3151 3611 6.758416 GCAAATGAAACTGGAGAAAAGAAAGT 59.242 34.615 0.00 0.00 0.00 2.66
3152 3612 7.920682 GCAAATGAAACTGGAGAAAAGAAAGTA 59.079 33.333 0.00 0.00 0.00 2.24
3249 3711 6.922247 GTTTAGATAAAACCTCCCTGCTAC 57.078 41.667 0.00 0.00 41.44 3.58
3250 3712 6.651086 GTTTAGATAAAACCTCCCTGCTACT 58.349 40.000 0.00 0.00 41.44 2.57
3251 3713 4.762289 AGATAAAACCTCCCTGCTACTG 57.238 45.455 0.00 0.00 0.00 2.74
3252 3714 2.781681 TAAAACCTCCCTGCTACTGC 57.218 50.000 0.00 0.00 40.20 4.40
3282 3744 7.040617 TCGTAGCCTATGTAGGATAGAAACTTG 60.041 40.741 10.25 0.00 44.27 3.16
3283 3745 5.859495 AGCCTATGTAGGATAGAAACTTGC 58.141 41.667 10.25 0.00 46.63 4.01
3284 3746 4.686554 GCCTATGTAGGATAGAAACTTGCG 59.313 45.833 10.25 0.00 46.63 4.85
3285 3747 4.686554 CCTATGTAGGATAGAAACTTGCGC 59.313 45.833 0.00 0.00 46.63 6.09
3286 3748 3.887621 TGTAGGATAGAAACTTGCGCT 57.112 42.857 9.73 0.00 0.00 5.92
3287 3749 3.782046 TGTAGGATAGAAACTTGCGCTC 58.218 45.455 9.73 0.00 0.00 5.03
3288 3750 2.317530 AGGATAGAAACTTGCGCTCC 57.682 50.000 9.73 3.32 0.00 4.70
3289 3751 1.834263 AGGATAGAAACTTGCGCTCCT 59.166 47.619 9.73 6.04 0.00 3.69
3290 3752 2.159028 AGGATAGAAACTTGCGCTCCTC 60.159 50.000 9.73 0.00 0.00 3.71
3291 3753 2.205911 GATAGAAACTTGCGCTCCTCC 58.794 52.381 9.73 0.00 0.00 4.30
3292 3754 1.267121 TAGAAACTTGCGCTCCTCCT 58.733 50.000 9.73 1.40 0.00 3.69
3293 3755 0.036858 AGAAACTTGCGCTCCTCCTC 60.037 55.000 9.73 0.00 0.00 3.71
3294 3756 1.003233 AAACTTGCGCTCCTCCTCC 60.003 57.895 9.73 0.00 0.00 4.30
3295 3757 1.768684 AAACTTGCGCTCCTCCTCCA 61.769 55.000 9.73 0.00 0.00 3.86
3296 3758 2.125350 CTTGCGCTCCTCCTCCAC 60.125 66.667 9.73 0.00 0.00 4.02
3297 3759 3.672295 CTTGCGCTCCTCCTCCACC 62.672 68.421 9.73 0.00 0.00 4.61
3298 3760 4.704103 TGCGCTCCTCCTCCACCT 62.704 66.667 9.73 0.00 0.00 4.00
3299 3761 3.844090 GCGCTCCTCCTCCACCTC 61.844 72.222 0.00 0.00 0.00 3.85
3300 3762 3.151022 CGCTCCTCCTCCACCTCC 61.151 72.222 0.00 0.00 0.00 4.30
3301 3763 2.366570 GCTCCTCCTCCACCTCCT 59.633 66.667 0.00 0.00 0.00 3.69
3302 3764 1.760480 GCTCCTCCTCCACCTCCTC 60.760 68.421 0.00 0.00 0.00 3.71
3303 3765 1.075600 CTCCTCCTCCACCTCCTCC 60.076 68.421 0.00 0.00 0.00 4.30
3304 3766 1.547755 TCCTCCTCCACCTCCTCCT 60.548 63.158 0.00 0.00 0.00 3.69
3305 3767 1.075600 CCTCCTCCACCTCCTCCTC 60.076 68.421 0.00 0.00 0.00 3.71
3306 3768 1.075600 CTCCTCCACCTCCTCCTCC 60.076 68.421 0.00 0.00 0.00 4.30
3307 3769 1.547755 TCCTCCACCTCCTCCTCCT 60.548 63.158 0.00 0.00 0.00 3.69
3308 3770 1.075600 CCTCCACCTCCTCCTCCTC 60.076 68.421 0.00 0.00 0.00 3.71
3309 3771 1.075600 CTCCACCTCCTCCTCCTCC 60.076 68.421 0.00 0.00 0.00 4.30
3310 3772 1.547755 TCCACCTCCTCCTCCTCCT 60.548 63.158 0.00 0.00 0.00 3.69
3311 3773 1.075600 CCACCTCCTCCTCCTCCTC 60.076 68.421 0.00 0.00 0.00 3.71
3312 3774 1.075600 CACCTCCTCCTCCTCCTCC 60.076 68.421 0.00 0.00 0.00 4.30
3313 3775 1.547755 ACCTCCTCCTCCTCCTCCA 60.548 63.158 0.00 0.00 0.00 3.86
3314 3776 1.156322 ACCTCCTCCTCCTCCTCCAA 61.156 60.000 0.00 0.00 0.00 3.53
3315 3777 0.398381 CCTCCTCCTCCTCCTCCAAG 60.398 65.000 0.00 0.00 0.00 3.61
3316 3778 0.633921 CTCCTCCTCCTCCTCCAAGA 59.366 60.000 0.00 0.00 0.00 3.02
3317 3779 1.007721 CTCCTCCTCCTCCTCCAAGAA 59.992 57.143 0.00 0.00 0.00 2.52
3318 3780 1.437149 TCCTCCTCCTCCTCCAAGAAA 59.563 52.381 0.00 0.00 0.00 2.52
3319 3781 1.836802 CCTCCTCCTCCTCCAAGAAAG 59.163 57.143 0.00 0.00 0.00 2.62
3320 3782 2.560841 CCTCCTCCTCCTCCAAGAAAGA 60.561 54.545 0.00 0.00 0.00 2.52
3321 3783 3.177228 CTCCTCCTCCTCCAAGAAAGAA 58.823 50.000 0.00 0.00 0.00 2.52
3322 3784 3.584848 CTCCTCCTCCTCCAAGAAAGAAA 59.415 47.826 0.00 0.00 0.00 2.52
3323 3785 3.584848 TCCTCCTCCTCCAAGAAAGAAAG 59.415 47.826 0.00 0.00 0.00 2.62
3324 3786 3.329225 CCTCCTCCTCCAAGAAAGAAAGT 59.671 47.826 0.00 0.00 0.00 2.66
3325 3787 4.202514 CCTCCTCCTCCAAGAAAGAAAGTT 60.203 45.833 0.00 0.00 0.00 2.66
3326 3788 5.013183 CCTCCTCCTCCAAGAAAGAAAGTTA 59.987 44.000 0.00 0.00 0.00 2.24
3327 3789 6.115448 TCCTCCTCCAAGAAAGAAAGTTAG 57.885 41.667 0.00 0.00 0.00 2.34
3328 3790 5.013183 TCCTCCTCCAAGAAAGAAAGTTAGG 59.987 44.000 0.00 0.00 0.00 2.69
3329 3791 5.013183 CCTCCTCCAAGAAAGAAAGTTAGGA 59.987 44.000 0.00 0.00 0.00 2.94
3330 3792 6.296720 CCTCCTCCAAGAAAGAAAGTTAGGAT 60.297 42.308 0.00 0.00 30.62 3.24
3331 3793 7.091533 TCCTCCAAGAAAGAAAGTTAGGATT 57.908 36.000 0.00 0.00 0.00 3.01
3332 3794 7.526918 TCCTCCAAGAAAGAAAGTTAGGATTT 58.473 34.615 0.00 0.00 0.00 2.17
3333 3795 7.448469 TCCTCCAAGAAAGAAAGTTAGGATTTG 59.552 37.037 0.00 0.00 0.00 2.32
3334 3796 7.231519 CCTCCAAGAAAGAAAGTTAGGATTTGT 59.768 37.037 0.00 0.00 0.00 2.83
3335 3797 7.940850 TCCAAGAAAGAAAGTTAGGATTTGTG 58.059 34.615 0.00 0.00 0.00 3.33
3336 3798 6.642540 CCAAGAAAGAAAGTTAGGATTTGTGC 59.357 38.462 0.00 0.00 0.00 4.57
3337 3799 6.332735 AGAAAGAAAGTTAGGATTTGTGCC 57.667 37.500 0.00 0.00 0.00 5.01
3338 3800 6.071320 AGAAAGAAAGTTAGGATTTGTGCCT 58.929 36.000 0.00 0.00 39.56 4.75
3339 3801 5.966742 AAGAAAGTTAGGATTTGTGCCTC 57.033 39.130 0.00 0.00 36.96 4.70
3340 3802 5.248380 AGAAAGTTAGGATTTGTGCCTCT 57.752 39.130 0.00 0.00 36.96 3.69
3341 3803 5.249420 AGAAAGTTAGGATTTGTGCCTCTC 58.751 41.667 0.00 0.00 36.96 3.20
3342 3804 3.252974 AGTTAGGATTTGTGCCTCTCG 57.747 47.619 0.00 0.00 36.96 4.04
3343 3805 1.666189 GTTAGGATTTGTGCCTCTCGC 59.334 52.381 0.00 0.00 36.96 5.03
3344 3806 0.178068 TAGGATTTGTGCCTCTCGCC 59.822 55.000 0.00 0.00 36.96 5.54
3345 3807 2.464459 GGATTTGTGCCTCTCGCCG 61.464 63.158 0.00 0.00 36.24 6.46
3346 3808 2.436646 ATTTGTGCCTCTCGCCGG 60.437 61.111 0.00 0.00 36.24 6.13
3371 3833 4.500116 GCAGGTCCGCCTCGTCTC 62.500 72.222 0.00 0.00 44.97 3.36
3372 3834 3.827898 CAGGTCCGCCTCGTCTCC 61.828 72.222 0.00 0.00 44.97 3.71
3382 3844 4.051167 TCGTCTCCGGTGGCCCTA 62.051 66.667 0.00 0.00 33.95 3.53
3383 3845 3.528370 CGTCTCCGGTGGCCCTAG 61.528 72.222 0.00 0.00 0.00 3.02
3384 3846 3.155167 GTCTCCGGTGGCCCTAGG 61.155 72.222 0.06 0.06 0.00 3.02
3385 3847 4.475444 TCTCCGGTGGCCCTAGGG 62.475 72.222 24.89 24.89 38.57 3.53
3402 3864 4.224370 CCTAGGGCACTACTACAAAAAGGA 59.776 45.833 0.00 0.00 0.00 3.36
3795 4263 1.603455 CCAACACCGAATGCACCCT 60.603 57.895 0.00 0.00 0.00 4.34
3796 4264 1.178534 CCAACACCGAATGCACCCTT 61.179 55.000 0.00 0.00 0.00 3.95
3797 4265 0.240945 CAACACCGAATGCACCCTTC 59.759 55.000 0.00 0.00 0.00 3.46
3798 4266 0.893727 AACACCGAATGCACCCTTCC 60.894 55.000 0.00 0.00 0.00 3.46
3799 4267 2.046285 CACCGAATGCACCCTTCCC 61.046 63.158 0.00 0.00 0.00 3.97
3800 4268 2.440247 CCGAATGCACCCTTCCCC 60.440 66.667 0.00 0.00 0.00 4.81
3801 4269 2.440247 CGAATGCACCCTTCCCCC 60.440 66.667 0.00 0.00 0.00 5.40
3830 4306 4.501400 CCTTGGATCGCCTTTTCAGTTTTT 60.501 41.667 0.00 0.00 34.31 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 95 4.670992 CGAACTTTCAGGAGTGCATGATTG 60.671 45.833 0.00 0.00 34.43 2.67
104 105 3.877508 AGGAACAAACGAACTTTCAGGAG 59.122 43.478 0.00 0.00 0.00 3.69
153 154 6.183360 CCTTTTTCTTGTGCTTTGAAGTTGTC 60.183 38.462 0.00 0.00 0.00 3.18
184 185 2.100584 CCCTCGTGAAGATCCTCTCTTG 59.899 54.545 0.00 0.00 44.42 3.02
271 272 6.478512 TCTGTTGTTTGCCCTTTTTATCTT 57.521 33.333 0.00 0.00 0.00 2.40
272 273 6.478512 TTCTGTTGTTTGCCCTTTTTATCT 57.521 33.333 0.00 0.00 0.00 1.98
273 274 7.657354 AGAATTCTGTTGTTTGCCCTTTTTATC 59.343 33.333 7.30 0.00 0.00 1.75
274 275 7.508687 AGAATTCTGTTGTTTGCCCTTTTTAT 58.491 30.769 7.30 0.00 0.00 1.40
275 276 6.883744 AGAATTCTGTTGTTTGCCCTTTTTA 58.116 32.000 7.30 0.00 0.00 1.52
276 277 5.744171 AGAATTCTGTTGTTTGCCCTTTTT 58.256 33.333 7.30 0.00 0.00 1.94
277 278 5.357742 AGAATTCTGTTGTTTGCCCTTTT 57.642 34.783 7.30 0.00 0.00 2.27
278 279 6.478512 TTAGAATTCTGTTGTTTGCCCTTT 57.521 33.333 18.47 0.00 0.00 3.11
279 280 6.462909 CCTTTAGAATTCTGTTGTTTGCCCTT 60.463 38.462 18.47 0.00 0.00 3.95
280 281 5.011023 CCTTTAGAATTCTGTTGTTTGCCCT 59.989 40.000 18.47 0.00 0.00 5.19
281 282 5.010617 TCCTTTAGAATTCTGTTGTTTGCCC 59.989 40.000 18.47 0.00 0.00 5.36
282 283 6.084326 TCCTTTAGAATTCTGTTGTTTGCC 57.916 37.500 18.47 0.00 0.00 4.52
283 284 7.491048 TGTTTCCTTTAGAATTCTGTTGTTTGC 59.509 33.333 18.47 3.96 33.44 3.68
284 285 8.925161 TGTTTCCTTTAGAATTCTGTTGTTTG 57.075 30.769 18.47 0.70 33.44 2.93
285 286 9.366216 GTTGTTTCCTTTAGAATTCTGTTGTTT 57.634 29.630 18.47 0.00 33.44 2.83
286 287 8.749354 AGTTGTTTCCTTTAGAATTCTGTTGTT 58.251 29.630 18.47 0.00 33.44 2.83
287 288 8.293699 AGTTGTTTCCTTTAGAATTCTGTTGT 57.706 30.769 18.47 0.00 33.44 3.32
288 289 9.586435 AAAGTTGTTTCCTTTAGAATTCTGTTG 57.414 29.630 18.47 7.24 33.44 3.33
289 290 9.586435 CAAAGTTGTTTCCTTTAGAATTCTGTT 57.414 29.630 18.47 0.00 33.44 3.16
290 291 8.966868 TCAAAGTTGTTTCCTTTAGAATTCTGT 58.033 29.630 18.47 0.00 33.44 3.41
291 292 9.971922 ATCAAAGTTGTTTCCTTTAGAATTCTG 57.028 29.630 18.47 1.05 33.44 3.02
294 295 9.971922 CAGATCAAAGTTGTTTCCTTTAGAATT 57.028 29.630 0.00 0.00 33.44 2.17
295 296 8.579863 CCAGATCAAAGTTGTTTCCTTTAGAAT 58.420 33.333 0.00 0.00 33.44 2.40
296 297 7.777910 TCCAGATCAAAGTTGTTTCCTTTAGAA 59.222 33.333 0.00 0.00 31.17 2.10
297 298 7.287061 TCCAGATCAAAGTTGTTTCCTTTAGA 58.713 34.615 0.00 0.00 31.17 2.10
298 299 7.510549 TCCAGATCAAAGTTGTTTCCTTTAG 57.489 36.000 0.00 0.00 31.17 1.85
299 300 8.477419 AATCCAGATCAAAGTTGTTTCCTTTA 57.523 30.769 0.00 0.00 31.17 1.85
300 301 6.983906 ATCCAGATCAAAGTTGTTTCCTTT 57.016 33.333 0.00 0.00 32.48 3.11
301 302 6.294176 CGAATCCAGATCAAAGTTGTTTCCTT 60.294 38.462 0.00 0.00 0.00 3.36
302 303 5.182001 CGAATCCAGATCAAAGTTGTTTCCT 59.818 40.000 0.00 0.00 0.00 3.36
303 304 5.048713 ACGAATCCAGATCAAAGTTGTTTCC 60.049 40.000 0.00 0.00 0.00 3.13
304 305 6.002062 ACGAATCCAGATCAAAGTTGTTTC 57.998 37.500 0.00 0.00 0.00 2.78
305 306 5.765182 AGACGAATCCAGATCAAAGTTGTTT 59.235 36.000 0.00 0.00 0.00 2.83
306 307 5.180117 CAGACGAATCCAGATCAAAGTTGTT 59.820 40.000 0.00 0.00 0.00 2.83
307 308 4.692625 CAGACGAATCCAGATCAAAGTTGT 59.307 41.667 0.00 0.00 0.00 3.32
308 309 4.931601 TCAGACGAATCCAGATCAAAGTTG 59.068 41.667 0.00 0.00 0.00 3.16
446 828 2.350522 AGAGTCATGCAATCCACGTTC 58.649 47.619 0.00 0.00 0.00 3.95
456 838 4.186856 TGACGATTTGTAGAGTCATGCA 57.813 40.909 0.00 0.00 38.52 3.96
460 842 8.568794 CCTCTATATTGACGATTTGTAGAGTCA 58.431 37.037 13.21 0.00 41.24 3.41
501 903 4.272489 CTCCAAAGGAGTGGCATCAATTA 58.728 43.478 4.89 0.00 44.25 1.40
519 921 1.941377 ATTTGCATTTCTGGCCTCCA 58.059 45.000 3.32 0.00 0.00 3.86
545 947 1.248101 TGCACCGATGGTCTCTCGAA 61.248 55.000 0.00 0.00 38.38 3.71
598 1000 1.064758 ACACTGTGGAAGGTTGAAGCA 60.065 47.619 13.09 0.00 0.00 3.91
599 1001 1.680338 ACACTGTGGAAGGTTGAAGC 58.320 50.000 13.09 0.00 0.00 3.86
620 1022 2.223340 GCGAACATGTTGGATAAGCTGG 60.223 50.000 22.97 0.00 0.00 4.85
621 1023 2.419673 TGCGAACATGTTGGATAAGCTG 59.580 45.455 22.97 2.66 0.00 4.24
656 1058 1.365699 ATTTCGTGTACCGCCATGAC 58.634 50.000 0.00 0.00 36.19 3.06
671 1075 9.274206 GGGTCTGAATCCTGTAGTTTATATTTC 57.726 37.037 0.00 0.00 0.00 2.17
739 1143 4.119862 CAAGTTTCTCCTTCACGAGACAA 58.880 43.478 0.00 0.00 38.62 3.18
746 1150 1.609072 GGGTGCAAGTTTCTCCTTCAC 59.391 52.381 0.00 0.00 0.00 3.18
750 1154 1.215423 ACTTGGGTGCAAGTTTCTCCT 59.785 47.619 0.00 0.00 42.16 3.69
762 1166 0.951040 GAGTCGGCAGAACTTGGGTG 60.951 60.000 0.00 0.00 0.00 4.61
763 1167 1.122019 AGAGTCGGCAGAACTTGGGT 61.122 55.000 0.00 0.00 0.00 4.51
784 1189 4.178861 GCCGTGAGCATACGTTGA 57.821 55.556 11.05 0.00 42.24 3.18
793 1198 1.008309 GATCGAGGTAGCCGTGAGC 60.008 63.158 0.00 0.00 44.25 4.26
795 1200 1.399714 ATTGATCGAGGTAGCCGTGA 58.600 50.000 0.00 0.00 0.00 4.35
811 1216 5.361427 TGTACCGTGGGTATGTGATTATTG 58.639 41.667 0.00 0.00 40.54 1.90
896 1306 5.630680 GTGTTTAACTTTGATGCAGTCATGG 59.369 40.000 0.00 0.00 36.54 3.66
1067 1482 0.101219 CGTGATCTCCATCGCTCACA 59.899 55.000 0.00 0.00 38.29 3.58
1068 1483 0.382158 TCGTGATCTCCATCGCTCAC 59.618 55.000 0.00 0.00 37.39 3.51
1072 1487 0.938637 CTGCTCGTGATCTCCATCGC 60.939 60.000 0.00 0.00 36.34 4.58
1422 1837 5.793034 ATACCTCTGGTATCGTAGGGTAT 57.207 43.478 3.61 0.00 44.67 2.73
1618 2057 3.681835 GCCGACCACGAGACCACT 61.682 66.667 0.00 0.00 42.66 4.00
1753 2192 2.974489 GAGGCACGGACGTTCTCGA 61.974 63.158 12.48 0.00 40.62 4.04
2238 2688 2.826738 GCCGTCGAGAGGAGCTCT 60.827 66.667 14.64 0.00 44.28 4.09
2292 2743 3.644606 CCCAGCCAGCTGTCCACT 61.645 66.667 17.86 1.31 42.15 4.00
2476 2927 4.657436 ATCAATCCAAGGAGTAGACGAC 57.343 45.455 0.00 0.00 0.00 4.34
2479 2930 5.119694 GGTCAATCAATCCAAGGAGTAGAC 58.880 45.833 0.00 0.00 0.00 2.59
2583 3040 9.548208 GAGTTCTAGCAAAACTGATAAACATTC 57.452 33.333 0.32 0.00 37.10 2.67
2584 3041 9.066892 TGAGTTCTAGCAAAACTGATAAACATT 57.933 29.630 0.32 0.00 37.10 2.71
2585 3042 8.621532 TGAGTTCTAGCAAAACTGATAAACAT 57.378 30.769 0.32 0.00 37.10 2.71
2586 3043 8.621532 ATGAGTTCTAGCAAAACTGATAAACA 57.378 30.769 0.32 0.00 37.10 2.83
2587 3044 8.940952 AGATGAGTTCTAGCAAAACTGATAAAC 58.059 33.333 0.32 0.00 37.10 2.01
2589 3046 9.809096 CTAGATGAGTTCTAGCAAAACTGATAA 57.191 33.333 0.32 0.00 45.63 1.75
2627 3084 9.693739 TGGCTATAAAAGGTGAATAAGATCAAA 57.306 29.630 0.00 0.00 0.00 2.69
2628 3085 9.866655 ATGGCTATAAAAGGTGAATAAGATCAA 57.133 29.630 0.00 0.00 0.00 2.57
2629 3086 9.866655 AATGGCTATAAAAGGTGAATAAGATCA 57.133 29.630 0.00 0.00 0.00 2.92
2631 3088 9.866655 TCAATGGCTATAAAAGGTGAATAAGAT 57.133 29.630 0.00 0.00 0.00 2.40
2632 3089 9.693739 TTCAATGGCTATAAAAGGTGAATAAGA 57.306 29.630 0.00 0.00 0.00 2.10
2635 3092 9.420118 ACATTCAATGGCTATAAAAGGTGAATA 57.580 29.630 1.58 0.00 33.80 1.75
2636 3093 8.199449 CACATTCAATGGCTATAAAAGGTGAAT 58.801 33.333 13.37 7.60 35.43 2.57
2637 3094 7.395772 TCACATTCAATGGCTATAAAAGGTGAA 59.604 33.333 16.82 8.19 33.60 3.18
2638 3095 6.889177 TCACATTCAATGGCTATAAAAGGTGA 59.111 34.615 15.82 15.82 33.60 4.02
2639 3096 7.099266 TCACATTCAATGGCTATAAAAGGTG 57.901 36.000 12.77 12.77 33.60 4.00
2640 3097 7.685155 GCATCACATTCAATGGCTATAAAAGGT 60.685 37.037 1.58 0.00 33.60 3.50
2641 3098 6.643770 GCATCACATTCAATGGCTATAAAAGG 59.356 38.462 1.58 0.00 33.60 3.11
2642 3099 7.431249 AGCATCACATTCAATGGCTATAAAAG 58.569 34.615 1.58 0.00 33.60 2.27
2643 3100 7.350744 AGCATCACATTCAATGGCTATAAAA 57.649 32.000 1.58 0.00 33.60 1.52
2644 3101 6.964807 AGCATCACATTCAATGGCTATAAA 57.035 33.333 1.58 0.00 33.60 1.40
2645 3102 9.737844 TTATAGCATCACATTCAATGGCTATAA 57.262 29.630 22.35 22.35 35.32 0.98
2646 3103 9.387257 CTTATAGCATCACATTCAATGGCTATA 57.613 33.333 16.27 16.27 31.20 1.31
2647 3104 8.105197 TCTTATAGCATCACATTCAATGGCTAT 58.895 33.333 17.71 17.71 32.32 2.97
2648 3105 7.452562 TCTTATAGCATCACATTCAATGGCTA 58.547 34.615 1.58 5.51 33.60 3.93
2649 3106 6.301486 TCTTATAGCATCACATTCAATGGCT 58.699 36.000 1.58 3.32 33.60 4.75
2650 3107 6.564709 TCTTATAGCATCACATTCAATGGC 57.435 37.500 1.58 0.00 33.60 4.40
2651 3108 7.027760 GCATCTTATAGCATCACATTCAATGG 58.972 38.462 1.58 0.00 33.60 3.16
2652 3109 6.741358 CGCATCTTATAGCATCACATTCAATG 59.259 38.462 0.00 0.00 0.00 2.82
2653 3110 6.429078 ACGCATCTTATAGCATCACATTCAAT 59.571 34.615 0.00 0.00 0.00 2.57
2654 3111 5.759763 ACGCATCTTATAGCATCACATTCAA 59.240 36.000 0.00 0.00 0.00 2.69
2655 3112 5.178067 CACGCATCTTATAGCATCACATTCA 59.822 40.000 0.00 0.00 0.00 2.57
2656 3113 5.178252 ACACGCATCTTATAGCATCACATTC 59.822 40.000 0.00 0.00 0.00 2.67
2657 3114 5.049886 CACACGCATCTTATAGCATCACATT 60.050 40.000 0.00 0.00 0.00 2.71
2658 3115 4.450080 CACACGCATCTTATAGCATCACAT 59.550 41.667 0.00 0.00 0.00 3.21
2659 3116 3.803778 CACACGCATCTTATAGCATCACA 59.196 43.478 0.00 0.00 0.00 3.58
2660 3117 3.185188 CCACACGCATCTTATAGCATCAC 59.815 47.826 0.00 0.00 0.00 3.06
2661 3118 3.392882 CCACACGCATCTTATAGCATCA 58.607 45.455 0.00 0.00 0.00 3.07
2662 3119 2.738846 CCCACACGCATCTTATAGCATC 59.261 50.000 0.00 0.00 0.00 3.91
2663 3120 2.771089 CCCACACGCATCTTATAGCAT 58.229 47.619 0.00 0.00 0.00 3.79
2664 3121 1.810031 GCCCACACGCATCTTATAGCA 60.810 52.381 0.00 0.00 0.00 3.49
2665 3122 0.868406 GCCCACACGCATCTTATAGC 59.132 55.000 0.00 0.00 0.00 2.97
2666 3123 2.138320 CAGCCCACACGCATCTTATAG 58.862 52.381 0.00 0.00 0.00 1.31
2667 3124 1.760029 TCAGCCCACACGCATCTTATA 59.240 47.619 0.00 0.00 0.00 0.98
2668 3125 0.541392 TCAGCCCACACGCATCTTAT 59.459 50.000 0.00 0.00 0.00 1.73
2669 3126 0.391130 GTCAGCCCACACGCATCTTA 60.391 55.000 0.00 0.00 0.00 2.10
2670 3127 1.672356 GTCAGCCCACACGCATCTT 60.672 57.895 0.00 0.00 0.00 2.40
2671 3128 2.046892 GTCAGCCCACACGCATCT 60.047 61.111 0.00 0.00 0.00 2.90
2672 3129 3.490759 CGTCAGCCCACACGCATC 61.491 66.667 0.00 0.00 0.00 3.91
2673 3130 4.314440 ACGTCAGCCCACACGCAT 62.314 61.111 0.00 0.00 39.73 4.73
2675 3132 4.961511 TCACGTCAGCCCACACGC 62.962 66.667 0.00 0.00 39.73 5.34
2676 3133 2.734723 CTCACGTCAGCCCACACG 60.735 66.667 0.00 0.00 41.90 4.49
2677 3134 1.227556 AACTCACGTCAGCCCACAC 60.228 57.895 0.00 0.00 0.00 3.82
2678 3135 1.227527 CAACTCACGTCAGCCCACA 60.228 57.895 0.00 0.00 0.00 4.17
2679 3136 0.032952 TACAACTCACGTCAGCCCAC 59.967 55.000 0.00 0.00 0.00 4.61
2680 3137 0.973632 ATACAACTCACGTCAGCCCA 59.026 50.000 0.00 0.00 0.00 5.36
2681 3138 1.204941 AGATACAACTCACGTCAGCCC 59.795 52.381 0.00 0.00 0.00 5.19
2682 3139 2.263077 CAGATACAACTCACGTCAGCC 58.737 52.381 0.00 0.00 0.00 4.85
2683 3140 2.947852 ACAGATACAACTCACGTCAGC 58.052 47.619 0.00 0.00 0.00 4.26
2684 3141 4.299155 ACAACAGATACAACTCACGTCAG 58.701 43.478 0.00 0.00 0.00 3.51
2685 3142 4.316205 ACAACAGATACAACTCACGTCA 57.684 40.909 0.00 0.00 0.00 4.35
2686 3143 4.506654 ACAACAACAGATACAACTCACGTC 59.493 41.667 0.00 0.00 0.00 4.34
2687 3144 4.439057 ACAACAACAGATACAACTCACGT 58.561 39.130 0.00 0.00 0.00 4.49
2688 3145 5.403897 AACAACAACAGATACAACTCACG 57.596 39.130 0.00 0.00 0.00 4.35
2689 3146 7.247728 TGAAAACAACAACAGATACAACTCAC 58.752 34.615 0.00 0.00 0.00 3.51
2690 3147 7.384439 TGAAAACAACAACAGATACAACTCA 57.616 32.000 0.00 0.00 0.00 3.41
2691 3148 8.682128 TTTGAAAACAACAACAGATACAACTC 57.318 30.769 0.00 0.00 0.00 3.01
2692 3149 8.303876 ACTTTGAAAACAACAACAGATACAACT 58.696 29.630 0.00 0.00 0.00 3.16
2693 3150 8.372521 CACTTTGAAAACAACAACAGATACAAC 58.627 33.333 0.00 0.00 0.00 3.32
2694 3151 8.300286 TCACTTTGAAAACAACAACAGATACAA 58.700 29.630 0.00 0.00 0.00 2.41
2695 3152 7.821652 TCACTTTGAAAACAACAACAGATACA 58.178 30.769 0.00 0.00 0.00 2.29
2696 3153 8.682128 TTCACTTTGAAAACAACAACAGATAC 57.318 30.769 0.00 0.00 32.71 2.24
2697 3154 9.299963 CATTCACTTTGAAAACAACAACAGATA 57.700 29.630 0.00 0.00 40.12 1.98
2698 3155 8.034215 TCATTCACTTTGAAAACAACAACAGAT 58.966 29.630 0.00 0.00 40.12 2.90
2699 3156 7.374272 TCATTCACTTTGAAAACAACAACAGA 58.626 30.769 0.00 0.00 40.12 3.41
2700 3157 7.541783 TCTCATTCACTTTGAAAACAACAACAG 59.458 33.333 0.00 0.00 40.12 3.16
2701 3158 7.328249 GTCTCATTCACTTTGAAAACAACAACA 59.672 33.333 0.00 0.00 40.12 3.33
2702 3159 7.328249 TGTCTCATTCACTTTGAAAACAACAAC 59.672 33.333 0.00 0.00 40.12 3.32
2703 3160 7.374272 TGTCTCATTCACTTTGAAAACAACAA 58.626 30.769 0.00 0.00 40.12 2.83
2704 3161 6.918626 TGTCTCATTCACTTTGAAAACAACA 58.081 32.000 0.00 0.00 40.12 3.33
2705 3162 7.810766 TTGTCTCATTCACTTTGAAAACAAC 57.189 32.000 0.00 0.00 40.12 3.32
2706 3163 8.824159 TTTTGTCTCATTCACTTTGAAAACAA 57.176 26.923 0.00 0.55 40.12 2.83
2707 3164 9.434420 AATTTTGTCTCATTCACTTTGAAAACA 57.566 25.926 0.00 0.00 40.12 2.83
2744 3201 8.783660 ACATTGGAATACCTAGAACTCATCTA 57.216 34.615 0.00 0.00 39.71 1.98
2745 3202 7.682787 ACATTGGAATACCTAGAACTCATCT 57.317 36.000 0.00 0.00 42.48 2.90
2746 3203 8.738645 AAACATTGGAATACCTAGAACTCATC 57.261 34.615 0.00 0.00 37.04 2.92
2750 3207 9.975218 ACAATAAACATTGGAATACCTAGAACT 57.025 29.630 0.00 0.00 35.93 3.01
2752 3209 9.747898 ACACAATAAACATTGGAATACCTAGAA 57.252 29.630 0.00 0.00 35.93 2.10
2819 3276 8.509690 CCACATTATTTCAGCTACATGAATAGG 58.490 37.037 0.00 0.00 38.90 2.57
2820 3277 9.060347 ACCACATTATTTCAGCTACATGAATAG 57.940 33.333 0.00 0.00 38.90 1.73
2968 3427 6.991938 ACATGTACATTGTGTAAAAAGGCAT 58.008 32.000 5.37 0.00 34.21 4.40
3118 3577 5.535783 TCTCCAGTTTCATTTGCTGATTTCA 59.464 36.000 0.00 0.00 32.72 2.69
3119 3578 6.017400 TCTCCAGTTTCATTTGCTGATTTC 57.983 37.500 0.00 0.00 32.72 2.17
3120 3579 6.409524 TTCTCCAGTTTCATTTGCTGATTT 57.590 33.333 0.00 0.00 32.72 2.17
3165 3625 6.039941 TCTGGTTTTCCGATTTAGCTTTTTCA 59.960 34.615 0.00 0.00 44.36 2.69
3166 3626 6.362551 GTCTGGTTTTCCGATTTAGCTTTTTC 59.637 38.462 0.00 0.00 44.36 2.29
3167 3627 6.183360 TGTCTGGTTTTCCGATTTAGCTTTTT 60.183 34.615 0.00 0.00 44.36 1.94
3227 3689 6.650120 CAGTAGCAGGGAGGTTTTATCTAAA 58.350 40.000 0.00 0.00 0.00 1.85
3232 3694 2.846827 AGCAGTAGCAGGGAGGTTTTAT 59.153 45.455 0.00 0.00 45.49 1.40
3252 3714 6.876155 TCTATCCTACATAGGCTACGAGTAG 58.124 44.000 17.27 17.27 43.31 2.57
3272 3734 1.834263 AGGAGGAGCGCAAGTTTCTAT 59.166 47.619 11.47 0.00 36.05 1.98
3275 3737 1.021920 GGAGGAGGAGCGCAAGTTTC 61.022 60.000 11.47 0.00 41.68 2.78
3282 3744 3.844090 GAGGTGGAGGAGGAGCGC 61.844 72.222 0.00 0.00 0.00 5.92
3283 3745 3.151022 GGAGGTGGAGGAGGAGCG 61.151 72.222 0.00 0.00 0.00 5.03
3284 3746 1.760480 GAGGAGGTGGAGGAGGAGC 60.760 68.421 0.00 0.00 0.00 4.70
3285 3747 1.075600 GGAGGAGGTGGAGGAGGAG 60.076 68.421 0.00 0.00 0.00 3.69
3286 3748 1.547755 AGGAGGAGGTGGAGGAGGA 60.548 63.158 0.00 0.00 0.00 3.71
3287 3749 1.075600 GAGGAGGAGGTGGAGGAGG 60.076 68.421 0.00 0.00 0.00 4.30
3288 3750 1.075600 GGAGGAGGAGGTGGAGGAG 60.076 68.421 0.00 0.00 0.00 3.69
3289 3751 1.547755 AGGAGGAGGAGGTGGAGGA 60.548 63.158 0.00 0.00 0.00 3.71
3290 3752 1.075600 GAGGAGGAGGAGGTGGAGG 60.076 68.421 0.00 0.00 0.00 4.30
3291 3753 1.075600 GGAGGAGGAGGAGGTGGAG 60.076 68.421 0.00 0.00 0.00 3.86
3292 3754 1.547755 AGGAGGAGGAGGAGGTGGA 60.548 63.158 0.00 0.00 0.00 4.02
3293 3755 1.075600 GAGGAGGAGGAGGAGGTGG 60.076 68.421 0.00 0.00 0.00 4.61
3294 3756 1.075600 GGAGGAGGAGGAGGAGGTG 60.076 68.421 0.00 0.00 0.00 4.00
3295 3757 1.156322 TTGGAGGAGGAGGAGGAGGT 61.156 60.000 0.00 0.00 0.00 3.85
3296 3758 0.398381 CTTGGAGGAGGAGGAGGAGG 60.398 65.000 0.00 0.00 0.00 4.30
3297 3759 0.633921 TCTTGGAGGAGGAGGAGGAG 59.366 60.000 0.00 0.00 0.00 3.69
3298 3760 1.093408 TTCTTGGAGGAGGAGGAGGA 58.907 55.000 0.00 0.00 0.00 3.71
3299 3761 1.836802 CTTTCTTGGAGGAGGAGGAGG 59.163 57.143 0.00 0.00 0.00 4.30
3300 3762 2.826488 TCTTTCTTGGAGGAGGAGGAG 58.174 52.381 0.00 0.00 0.00 3.69
3301 3763 3.275848 TTCTTTCTTGGAGGAGGAGGA 57.724 47.619 0.00 0.00 0.00 3.71
3302 3764 3.329225 ACTTTCTTTCTTGGAGGAGGAGG 59.671 47.826 0.00 0.00 0.00 4.30
3303 3765 4.632327 ACTTTCTTTCTTGGAGGAGGAG 57.368 45.455 0.00 0.00 0.00 3.69
3304 3766 5.013183 CCTAACTTTCTTTCTTGGAGGAGGA 59.987 44.000 0.00 0.00 0.00 3.71
3305 3767 5.013183 TCCTAACTTTCTTTCTTGGAGGAGG 59.987 44.000 0.00 0.00 0.00 4.30
3306 3768 6.115448 TCCTAACTTTCTTTCTTGGAGGAG 57.885 41.667 0.00 0.00 0.00 3.69
3307 3769 6.704056 ATCCTAACTTTCTTTCTTGGAGGA 57.296 37.500 0.00 0.00 35.16 3.71
3308 3770 7.231519 ACAAATCCTAACTTTCTTTCTTGGAGG 59.768 37.037 0.00 0.00 0.00 4.30
3309 3771 8.078596 CACAAATCCTAACTTTCTTTCTTGGAG 58.921 37.037 0.00 0.00 0.00 3.86
3310 3772 7.470009 GCACAAATCCTAACTTTCTTTCTTGGA 60.470 37.037 0.00 0.00 0.00 3.53
3311 3773 6.642540 GCACAAATCCTAACTTTCTTTCTTGG 59.357 38.462 0.00 0.00 0.00 3.61
3312 3774 6.642540 GGCACAAATCCTAACTTTCTTTCTTG 59.357 38.462 0.00 0.00 0.00 3.02
3313 3775 6.551227 AGGCACAAATCCTAACTTTCTTTCTT 59.449 34.615 0.00 0.00 30.79 2.52
3314 3776 6.071320 AGGCACAAATCCTAACTTTCTTTCT 58.929 36.000 0.00 0.00 30.79 2.52
3315 3777 6.207614 AGAGGCACAAATCCTAACTTTCTTTC 59.792 38.462 0.00 0.00 33.24 2.62
3316 3778 6.071320 AGAGGCACAAATCCTAACTTTCTTT 58.929 36.000 0.00 0.00 33.24 2.52
3317 3779 5.635120 AGAGGCACAAATCCTAACTTTCTT 58.365 37.500 0.00 0.00 33.24 2.52
3318 3780 5.248380 AGAGGCACAAATCCTAACTTTCT 57.752 39.130 0.00 0.00 33.24 2.52
3319 3781 4.093556 CGAGAGGCACAAATCCTAACTTTC 59.906 45.833 0.00 0.00 33.24 2.62
3320 3782 4.003648 CGAGAGGCACAAATCCTAACTTT 58.996 43.478 0.00 0.00 33.24 2.66
3321 3783 3.600388 CGAGAGGCACAAATCCTAACTT 58.400 45.455 0.00 0.00 33.24 2.66
3322 3784 2.678190 GCGAGAGGCACAAATCCTAACT 60.678 50.000 0.00 0.00 42.87 2.24
3323 3785 1.666189 GCGAGAGGCACAAATCCTAAC 59.334 52.381 0.00 0.00 42.87 2.34
3324 3786 2.024176 GCGAGAGGCACAAATCCTAA 57.976 50.000 0.00 0.00 42.87 2.69
3325 3787 3.760693 GCGAGAGGCACAAATCCTA 57.239 52.632 0.00 0.00 42.87 2.94
3326 3788 4.625800 GCGAGAGGCACAAATCCT 57.374 55.556 0.00 0.00 42.87 3.24
3367 3829 3.155167 CCTAGGGCCACCGGAGAC 61.155 72.222 9.46 0.00 43.47 3.36
3368 3830 4.475444 CCCTAGGGCCACCGGAGA 62.475 72.222 16.90 0.00 43.47 3.71
3378 3840 4.514401 CTTTTTGTAGTAGTGCCCTAGGG 58.486 47.826 24.89 24.89 38.57 3.53
3379 3841 4.224370 TCCTTTTTGTAGTAGTGCCCTAGG 59.776 45.833 0.06 0.06 0.00 3.02
3380 3842 5.046520 AGTCCTTTTTGTAGTAGTGCCCTAG 60.047 44.000 0.00 0.00 0.00 3.02
3381 3843 4.842380 AGTCCTTTTTGTAGTAGTGCCCTA 59.158 41.667 0.00 0.00 0.00 3.53
3382 3844 3.651423 AGTCCTTTTTGTAGTAGTGCCCT 59.349 43.478 0.00 0.00 0.00 5.19
3383 3845 4.017177 AGTCCTTTTTGTAGTAGTGCCC 57.983 45.455 0.00 0.00 0.00 5.36
3384 3846 7.779073 TCTATAGTCCTTTTTGTAGTAGTGCC 58.221 38.462 0.00 0.00 0.00 5.01
3385 3847 9.250624 CATCTATAGTCCTTTTTGTAGTAGTGC 57.749 37.037 0.00 0.00 0.00 4.40
3402 3864 7.170965 CCATTAGTGGCCATTTCATCTATAGT 58.829 38.462 9.72 0.00 39.01 2.12
3675 4138 8.318167 GTGCGCCATTAGTAACAAATATTTTTC 58.682 33.333 4.18 0.00 0.00 2.29
3804 4272 1.000359 AAAAGGCGATCCAAGGGGG 60.000 57.895 0.00 0.00 38.37 5.40
3805 4273 0.323360 TGAAAAGGCGATCCAAGGGG 60.323 55.000 0.00 0.00 33.74 4.79
3809 4277 4.664150 AAAAACTGAAAAGGCGATCCAA 57.336 36.364 0.00 0.00 33.74 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.