Multiple sequence alignment - TraesCS4B01G301700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G301700 chr4B 100.000 2598 0 0 1 2598 588222419 588225016 0.000000e+00 4798.0
1 TraesCS4B01G301700 chr4B 86.667 225 24 4 1984 2202 588225353 588225129 7.180000e-61 244.0
2 TraesCS4B01G301700 chr5B 96.955 624 16 3 1976 2598 82237412 82236791 0.000000e+00 1044.0
3 TraesCS4B01G301700 chr5B 93.387 620 20 4 1979 2598 516462514 516461916 0.000000e+00 898.0
4 TraesCS4B01G301700 chr5B 81.299 508 68 11 1984 2484 333189142 333189629 1.130000e-103 387.0
5 TraesCS4B01G301700 chr5B 90.104 192 17 2 1984 2174 82236452 82236642 5.550000e-62 248.0
6 TraesCS4B01G301700 chr2A 96.774 620 19 1 1979 2598 529952211 529951593 0.000000e+00 1033.0
7 TraesCS4B01G301700 chr2A 94.003 617 19 3 1983 2598 740376355 740376954 0.000000e+00 918.0
8 TraesCS4B01G301700 chr2A 97.143 35 1 0 2392 2426 529951876 529951842 2.790000e-05 60.2
9 TraesCS4B01G301700 chr4D 88.860 781 54 13 1154 1904 468624871 468625648 0.000000e+00 929.0
10 TraesCS4B01G301700 chr4D 91.880 234 11 5 429 658 468624145 468624374 1.160000e-83 320.0
11 TraesCS4B01G301700 chr4D 79.335 421 31 26 770 1153 468624437 468624838 7.180000e-61 244.0
12 TraesCS4B01G301700 chr4A 85.243 576 48 20 1230 1796 2905708 2905161 2.260000e-155 558.0
13 TraesCS4B01G301700 chr4A 80.135 443 65 16 1009 1447 710796243 710796666 2.510000e-80 309.0
14 TraesCS4B01G301700 chr4A 93.671 158 9 1 997 1153 2905982 2905825 4.320000e-58 235.0
15 TraesCS4B01G301700 chr4A 89.655 116 11 1 1863 1978 2903318 2903204 2.080000e-31 147.0
16 TraesCS4B01G301700 chr4A 89.247 93 8 2 429 521 2906349 2906259 5.880000e-22 115.0
17 TraesCS4B01G301700 chr4A 79.528 127 21 4 1468 1590 710796666 710796791 4.610000e-13 86.1
18 TraesCS4B01G301700 chr3B 82.422 512 59 16 1984 2485 736158864 736158374 4.000000e-113 418.0
19 TraesCS4B01G301700 chr6B 81.400 500 72 9 1984 2482 588900351 588899872 3.140000e-104 388.0
20 TraesCS4B01G301700 chr7A 77.815 595 85 29 1006 1590 27202676 27203233 8.970000e-85 324.0
21 TraesCS4B01G301700 chr7D 80.088 452 58 17 1009 1447 26773393 26773825 9.030000e-80 307.0
22 TraesCS4B01G301700 chr7B 87.698 252 29 2 1984 2235 711049136 711049385 2.530000e-75 292.0
23 TraesCS4B01G301700 chr5D 80.000 315 44 10 113 418 545117750 545117446 5.630000e-52 215.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G301700 chr4B 588222419 588225016 2597 False 4798.000000 4798 100.000000 1 2598 1 chr4B.!!$F1 2597
1 TraesCS4B01G301700 chr5B 82236791 82237412 621 True 1044.000000 1044 96.955000 1976 2598 1 chr5B.!!$R1 622
2 TraesCS4B01G301700 chr5B 516461916 516462514 598 True 898.000000 898 93.387000 1979 2598 1 chr5B.!!$R2 619
3 TraesCS4B01G301700 chr2A 740376355 740376954 599 False 918.000000 918 94.003000 1983 2598 1 chr2A.!!$F1 615
4 TraesCS4B01G301700 chr2A 529951593 529952211 618 True 546.600000 1033 96.958500 1979 2598 2 chr2A.!!$R1 619
5 TraesCS4B01G301700 chr4D 468624145 468625648 1503 False 497.666667 929 86.691667 429 1904 3 chr4D.!!$F1 1475
6 TraesCS4B01G301700 chr4A 2903204 2906349 3145 True 263.750000 558 89.454000 429 1978 4 chr4A.!!$R1 1549
7 TraesCS4B01G301700 chr7A 27202676 27203233 557 False 324.000000 324 77.815000 1006 1590 1 chr7A.!!$F1 584

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
65 66 0.106066 TTCCCCCTTATGGCAGCATG 60.106 55.0 0.0 0.0 40.87 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1822 1998 0.036952 AGTCACTGGCACGAATCTGG 60.037 55.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 5.880054 TTTTTAGCAAGCCTATCTGTGTC 57.120 39.130 0.00 0.00 0.00 3.67
31 32 4.551702 TTTAGCAAGCCTATCTGTGTCA 57.448 40.909 0.00 0.00 0.00 3.58
32 33 4.551702 TTAGCAAGCCTATCTGTGTCAA 57.448 40.909 0.00 0.00 0.00 3.18
33 34 3.641434 AGCAAGCCTATCTGTGTCAAT 57.359 42.857 0.00 0.00 0.00 2.57
34 35 3.960571 AGCAAGCCTATCTGTGTCAATT 58.039 40.909 0.00 0.00 0.00 2.32
35 36 3.693085 AGCAAGCCTATCTGTGTCAATTG 59.307 43.478 0.00 0.00 0.00 2.32
36 37 3.691118 GCAAGCCTATCTGTGTCAATTGA 59.309 43.478 3.38 3.38 0.00 2.57
37 38 4.156556 GCAAGCCTATCTGTGTCAATTGAA 59.843 41.667 10.35 0.00 0.00 2.69
38 39 5.675575 GCAAGCCTATCTGTGTCAATTGAAG 60.676 44.000 10.35 4.43 0.00 3.02
39 40 5.426689 AGCCTATCTGTGTCAATTGAAGA 57.573 39.130 10.35 10.18 0.00 2.87
40 41 5.426504 AGCCTATCTGTGTCAATTGAAGAG 58.573 41.667 10.35 8.74 0.00 2.85
41 42 5.046014 AGCCTATCTGTGTCAATTGAAGAGT 60.046 40.000 10.35 3.44 0.00 3.24
42 43 6.155221 AGCCTATCTGTGTCAATTGAAGAGTA 59.845 38.462 10.35 4.31 0.00 2.59
43 44 6.989169 GCCTATCTGTGTCAATTGAAGAGTAT 59.011 38.462 10.35 4.60 0.00 2.12
44 45 7.497249 GCCTATCTGTGTCAATTGAAGAGTATT 59.503 37.037 10.35 0.00 0.00 1.89
45 46 9.388506 CCTATCTGTGTCAATTGAAGAGTATTT 57.611 33.333 10.35 0.00 0.00 1.40
49 50 8.567948 TCTGTGTCAATTGAAGAGTATTTTTCC 58.432 33.333 10.35 0.00 0.00 3.13
50 51 7.657336 TGTGTCAATTGAAGAGTATTTTTCCC 58.343 34.615 10.35 0.00 0.00 3.97
51 52 7.090808 GTGTCAATTGAAGAGTATTTTTCCCC 58.909 38.462 10.35 0.00 0.00 4.81
52 53 6.210584 TGTCAATTGAAGAGTATTTTTCCCCC 59.789 38.462 10.35 0.00 0.00 5.40
53 54 6.437477 GTCAATTGAAGAGTATTTTTCCCCCT 59.563 38.462 10.35 0.00 0.00 4.79
54 55 7.016296 TCAATTGAAGAGTATTTTTCCCCCTT 58.984 34.615 5.45 0.00 0.00 3.95
55 56 8.174085 TCAATTGAAGAGTATTTTTCCCCCTTA 58.826 33.333 5.45 0.00 0.00 2.69
56 57 8.981659 CAATTGAAGAGTATTTTTCCCCCTTAT 58.018 33.333 0.00 0.00 0.00 1.73
57 58 7.954666 TTGAAGAGTATTTTTCCCCCTTATG 57.045 36.000 0.00 0.00 0.00 1.90
58 59 6.431722 TGAAGAGTATTTTTCCCCCTTATGG 58.568 40.000 0.00 0.00 0.00 2.74
59 60 4.804597 AGAGTATTTTTCCCCCTTATGGC 58.195 43.478 0.00 0.00 0.00 4.40
60 61 4.231890 AGAGTATTTTTCCCCCTTATGGCA 59.768 41.667 0.00 0.00 0.00 4.92
61 62 4.546674 AGTATTTTTCCCCCTTATGGCAG 58.453 43.478 0.00 0.00 0.00 4.85
62 63 1.567357 TTTTTCCCCCTTATGGCAGC 58.433 50.000 0.00 0.00 0.00 5.25
63 64 0.411452 TTTTCCCCCTTATGGCAGCA 59.589 50.000 0.00 0.00 0.00 4.41
64 65 0.636101 TTTCCCCCTTATGGCAGCAT 59.364 50.000 0.00 0.00 0.00 3.79
65 66 0.106066 TTCCCCCTTATGGCAGCATG 60.106 55.000 0.00 0.00 40.87 4.06
66 67 1.231068 CCCCCTTATGGCAGCATGT 59.769 57.895 0.00 0.00 39.31 3.21
67 68 0.478072 CCCCCTTATGGCAGCATGTA 59.522 55.000 0.00 0.00 39.31 2.29
68 69 1.609208 CCCCTTATGGCAGCATGTAC 58.391 55.000 0.00 0.00 39.31 2.90
69 70 1.229428 CCCTTATGGCAGCATGTACG 58.771 55.000 0.00 0.00 39.31 3.67
70 71 1.475034 CCCTTATGGCAGCATGTACGT 60.475 52.381 0.00 0.00 39.31 3.57
71 72 2.224185 CCCTTATGGCAGCATGTACGTA 60.224 50.000 0.00 0.00 39.31 3.57
72 73 3.059884 CCTTATGGCAGCATGTACGTAG 58.940 50.000 0.00 0.00 39.31 3.51
73 74 3.243737 CCTTATGGCAGCATGTACGTAGA 60.244 47.826 0.00 0.00 39.31 2.59
74 75 2.225068 ATGGCAGCATGTACGTAGAC 57.775 50.000 0.00 0.00 39.31 2.59
75 76 1.182667 TGGCAGCATGTACGTAGACT 58.817 50.000 0.00 0.00 39.31 3.24
76 77 2.371306 TGGCAGCATGTACGTAGACTA 58.629 47.619 0.00 0.00 39.31 2.59
77 78 2.098607 TGGCAGCATGTACGTAGACTAC 59.901 50.000 0.00 2.24 39.31 2.73
78 79 2.098607 GGCAGCATGTACGTAGACTACA 59.901 50.000 12.99 0.00 39.31 2.74
79 80 3.428452 GGCAGCATGTACGTAGACTACAA 60.428 47.826 12.99 0.00 39.31 2.41
80 81 3.791887 GCAGCATGTACGTAGACTACAAG 59.208 47.826 12.99 0.12 39.31 3.16
81 82 4.438336 GCAGCATGTACGTAGACTACAAGA 60.438 45.833 12.99 0.00 39.31 3.02
82 83 5.733655 GCAGCATGTACGTAGACTACAAGAT 60.734 44.000 12.99 1.78 39.31 2.40
83 84 5.683302 CAGCATGTACGTAGACTACAAGATG 59.317 44.000 12.99 13.38 0.00 2.90
84 85 5.357314 AGCATGTACGTAGACTACAAGATGT 59.643 40.000 12.99 4.68 0.00 3.06
85 86 5.455849 GCATGTACGTAGACTACAAGATGTG 59.544 44.000 12.99 5.31 0.00 3.21
86 87 6.677187 GCATGTACGTAGACTACAAGATGTGA 60.677 42.308 12.99 0.00 0.00 3.58
87 88 6.418585 TGTACGTAGACTACAAGATGTGAG 57.581 41.667 12.99 0.00 0.00 3.51
88 89 4.966965 ACGTAGACTACAAGATGTGAGG 57.033 45.455 12.99 0.00 0.00 3.86
89 90 4.333690 ACGTAGACTACAAGATGTGAGGT 58.666 43.478 12.99 0.00 0.00 3.85
90 91 4.156190 ACGTAGACTACAAGATGTGAGGTG 59.844 45.833 12.99 0.00 0.00 4.00
91 92 4.395231 CGTAGACTACAAGATGTGAGGTGA 59.605 45.833 12.99 0.00 0.00 4.02
92 93 5.447954 CGTAGACTACAAGATGTGAGGTGAG 60.448 48.000 12.99 0.00 0.00 3.51
93 94 4.667573 AGACTACAAGATGTGAGGTGAGA 58.332 43.478 0.00 0.00 0.00 3.27
94 95 5.080337 AGACTACAAGATGTGAGGTGAGAA 58.920 41.667 0.00 0.00 0.00 2.87
95 96 5.540337 AGACTACAAGATGTGAGGTGAGAAA 59.460 40.000 0.00 0.00 0.00 2.52
96 97 6.042093 AGACTACAAGATGTGAGGTGAGAAAA 59.958 38.462 0.00 0.00 0.00 2.29
97 98 6.773638 ACTACAAGATGTGAGGTGAGAAAAT 58.226 36.000 0.00 0.00 0.00 1.82
98 99 7.907389 ACTACAAGATGTGAGGTGAGAAAATA 58.093 34.615 0.00 0.00 0.00 1.40
99 100 7.819900 ACTACAAGATGTGAGGTGAGAAAATAC 59.180 37.037 0.00 0.00 0.00 1.89
100 101 6.533730 ACAAGATGTGAGGTGAGAAAATACA 58.466 36.000 0.00 0.00 0.00 2.29
101 102 7.170965 ACAAGATGTGAGGTGAGAAAATACAT 58.829 34.615 0.00 0.00 0.00 2.29
102 103 7.335422 ACAAGATGTGAGGTGAGAAAATACATC 59.665 37.037 0.00 0.00 41.77 3.06
103 104 6.045318 AGATGTGAGGTGAGAAAATACATCG 58.955 40.000 0.00 0.00 44.47 3.84
104 105 4.503910 TGTGAGGTGAGAAAATACATCGG 58.496 43.478 0.00 0.00 30.79 4.18
105 106 4.020573 TGTGAGGTGAGAAAATACATCGGT 60.021 41.667 0.00 0.00 30.79 4.69
106 107 4.330074 GTGAGGTGAGAAAATACATCGGTG 59.670 45.833 0.00 0.00 30.79 4.94
107 108 4.221924 TGAGGTGAGAAAATACATCGGTGA 59.778 41.667 0.65 0.00 30.79 4.02
108 109 5.104941 TGAGGTGAGAAAATACATCGGTGAT 60.105 40.000 0.65 0.00 30.79 3.06
109 110 5.360591 AGGTGAGAAAATACATCGGTGATC 58.639 41.667 0.65 0.00 0.00 2.92
110 111 5.129485 AGGTGAGAAAATACATCGGTGATCT 59.871 40.000 0.65 0.00 0.00 2.75
111 112 5.463724 GGTGAGAAAATACATCGGTGATCTC 59.536 44.000 0.65 7.81 34.19 2.75
112 113 5.174035 GTGAGAAAATACATCGGTGATCTCG 59.826 44.000 0.65 0.00 35.88 4.04
113 114 4.621991 AGAAAATACATCGGTGATCTCGG 58.378 43.478 0.65 3.11 0.00 4.63
114 115 3.386768 AAATACATCGGTGATCTCGGG 57.613 47.619 0.65 5.20 0.00 5.14
115 116 1.996798 ATACATCGGTGATCTCGGGT 58.003 50.000 0.65 9.47 0.00 5.28
116 117 1.029681 TACATCGGTGATCTCGGGTG 58.970 55.000 0.65 12.48 0.00 4.61
117 118 1.592669 CATCGGTGATCTCGGGTGC 60.593 63.158 0.00 0.00 0.00 5.01
118 119 3.138930 ATCGGTGATCTCGGGTGCG 62.139 63.158 8.66 0.00 0.00 5.34
119 120 3.822192 CGGTGATCTCGGGTGCGA 61.822 66.667 0.00 0.00 0.00 5.10
120 121 2.105128 GGTGATCTCGGGTGCGAG 59.895 66.667 0.00 0.00 37.35 5.03
121 122 2.583593 GTGATCTCGGGTGCGAGC 60.584 66.667 0.00 0.00 36.09 5.03
122 123 4.193334 TGATCTCGGGTGCGAGCG 62.193 66.667 0.00 0.00 36.09 5.03
133 134 3.862124 GCGAGCGCACCCTATATG 58.138 61.111 11.47 0.00 41.49 1.78
134 135 2.383527 GCGAGCGCACCCTATATGC 61.384 63.158 11.47 0.00 41.49 3.14
135 136 1.006220 CGAGCGCACCCTATATGCA 60.006 57.895 11.47 0.00 43.57 3.96
136 137 0.599991 CGAGCGCACCCTATATGCAA 60.600 55.000 11.47 0.00 43.57 4.08
137 138 1.593196 GAGCGCACCCTATATGCAAA 58.407 50.000 11.47 0.00 43.57 3.68
138 139 1.946768 GAGCGCACCCTATATGCAAAA 59.053 47.619 11.47 0.00 43.57 2.44
139 140 2.357637 GAGCGCACCCTATATGCAAAAA 59.642 45.455 11.47 0.00 43.57 1.94
247 248 9.052080 GTTTTATTAGAGAATGACTTTCGTTGC 57.948 33.333 0.00 0.00 39.46 4.17
248 249 7.899178 TTATTAGAGAATGACTTTCGTTGCA 57.101 32.000 0.00 0.00 39.46 4.08
249 250 6.992063 ATTAGAGAATGACTTTCGTTGCAT 57.008 33.333 0.00 0.00 39.46 3.96
250 251 4.935885 AGAGAATGACTTTCGTTGCATC 57.064 40.909 0.00 0.00 39.46 3.91
251 252 3.686726 AGAGAATGACTTTCGTTGCATCC 59.313 43.478 0.00 0.00 39.46 3.51
252 253 3.679389 AGAATGACTTTCGTTGCATCCT 58.321 40.909 0.00 0.00 39.46 3.24
253 254 3.438087 AGAATGACTTTCGTTGCATCCTG 59.562 43.478 0.00 0.00 39.46 3.86
254 255 2.542020 TGACTTTCGTTGCATCCTGA 57.458 45.000 0.00 0.00 0.00 3.86
255 256 2.416747 TGACTTTCGTTGCATCCTGAG 58.583 47.619 0.00 0.00 0.00 3.35
256 257 2.224281 TGACTTTCGTTGCATCCTGAGT 60.224 45.455 0.00 0.00 0.00 3.41
257 258 2.413453 GACTTTCGTTGCATCCTGAGTC 59.587 50.000 0.00 0.00 0.00 3.36
258 259 1.391485 CTTTCGTTGCATCCTGAGTCG 59.609 52.381 0.00 0.00 0.00 4.18
259 260 0.601057 TTCGTTGCATCCTGAGTCGA 59.399 50.000 0.00 0.00 0.00 4.20
260 261 0.601057 TCGTTGCATCCTGAGTCGAA 59.399 50.000 0.00 0.00 0.00 3.71
261 262 0.994995 CGTTGCATCCTGAGTCGAAG 59.005 55.000 0.00 0.00 0.00 3.79
262 263 1.402852 CGTTGCATCCTGAGTCGAAGA 60.403 52.381 0.00 0.00 0.00 2.87
263 264 2.266554 GTTGCATCCTGAGTCGAAGAG 58.733 52.381 0.00 0.00 36.95 2.85
264 265 1.550327 TGCATCCTGAGTCGAAGAGT 58.450 50.000 0.00 0.00 46.63 3.24
277 278 3.772522 CGAAGAGTCGGAGAAAAACAC 57.227 47.619 0.00 0.00 43.81 3.32
278 279 3.381949 CGAAGAGTCGGAGAAAAACACT 58.618 45.455 0.00 0.00 43.81 3.55
279 280 4.543692 CGAAGAGTCGGAGAAAAACACTA 58.456 43.478 0.00 0.00 43.81 2.74
280 281 5.162075 CGAAGAGTCGGAGAAAAACACTAT 58.838 41.667 0.00 0.00 43.81 2.12
281 282 6.320171 CGAAGAGTCGGAGAAAAACACTATA 58.680 40.000 0.00 0.00 43.81 1.31
282 283 6.973474 CGAAGAGTCGGAGAAAAACACTATAT 59.027 38.462 0.00 0.00 43.81 0.86
283 284 8.127327 CGAAGAGTCGGAGAAAAACACTATATA 58.873 37.037 0.00 0.00 43.81 0.86
284 285 9.235537 GAAGAGTCGGAGAAAAACACTATATAC 57.764 37.037 0.00 0.00 39.69 1.47
285 286 8.522542 AGAGTCGGAGAAAAACACTATATACT 57.477 34.615 0.00 0.00 39.69 2.12
286 287 8.407064 AGAGTCGGAGAAAAACACTATATACTG 58.593 37.037 0.00 0.00 39.69 2.74
287 288 8.064336 AGTCGGAGAAAAACACTATATACTGT 57.936 34.615 0.00 0.00 39.69 3.55
288 289 9.182214 AGTCGGAGAAAAACACTATATACTGTA 57.818 33.333 0.00 0.00 39.69 2.74
289 290 9.230932 GTCGGAGAAAAACACTATATACTGTAC 57.769 37.037 0.00 0.00 39.69 2.90
290 291 8.959548 TCGGAGAAAAACACTATATACTGTACA 58.040 33.333 0.00 0.00 0.00 2.90
291 292 9.017669 CGGAGAAAAACACTATATACTGTACAC 57.982 37.037 0.00 0.00 0.00 2.90
292 293 9.017669 GGAGAAAAACACTATATACTGTACACG 57.982 37.037 0.00 0.00 0.00 4.49
293 294 8.403606 AGAAAAACACTATATACTGTACACGC 57.596 34.615 0.00 0.00 0.00 5.34
294 295 8.248945 AGAAAAACACTATATACTGTACACGCT 58.751 33.333 0.00 0.00 0.00 5.07
295 296 9.507280 GAAAAACACTATATACTGTACACGCTA 57.493 33.333 0.00 0.00 0.00 4.26
301 302 9.634300 CACTATATACTGTACACGCTATTATCG 57.366 37.037 0.00 0.00 0.00 2.92
302 303 9.376075 ACTATATACTGTACACGCTATTATCGT 57.624 33.333 0.00 0.00 41.28 3.73
303 304 9.846738 CTATATACTGTACACGCTATTATCGTC 57.153 37.037 0.00 0.00 38.19 4.20
304 305 4.888038 ACTGTACACGCTATTATCGTCA 57.112 40.909 0.00 0.00 38.19 4.35
305 306 5.434352 ACTGTACACGCTATTATCGTCAT 57.566 39.130 0.00 0.00 38.19 3.06
306 307 6.549912 ACTGTACACGCTATTATCGTCATA 57.450 37.500 0.00 0.00 38.19 2.15
307 308 6.962686 ACTGTACACGCTATTATCGTCATAA 58.037 36.000 0.00 0.00 38.19 1.90
308 309 7.420002 ACTGTACACGCTATTATCGTCATAAA 58.580 34.615 0.00 0.00 38.19 1.40
309 310 7.377928 ACTGTACACGCTATTATCGTCATAAAC 59.622 37.037 0.00 0.00 38.19 2.01
310 311 7.420002 TGTACACGCTATTATCGTCATAAACT 58.580 34.615 0.00 0.00 38.19 2.66
311 312 7.916977 TGTACACGCTATTATCGTCATAAACTT 59.083 33.333 0.00 0.00 38.19 2.66
312 313 7.161829 ACACGCTATTATCGTCATAAACTTG 57.838 36.000 0.00 0.00 38.19 3.16
313 314 6.755141 ACACGCTATTATCGTCATAAACTTGT 59.245 34.615 0.00 0.00 38.19 3.16
314 315 7.043590 ACACGCTATTATCGTCATAAACTTGTC 60.044 37.037 0.00 0.00 38.19 3.18
315 316 6.420008 ACGCTATTATCGTCATAAACTTGTCC 59.580 38.462 0.00 0.00 34.84 4.02
316 317 6.641314 CGCTATTATCGTCATAAACTTGTCCT 59.359 38.462 0.00 0.00 0.00 3.85
317 318 7.169308 CGCTATTATCGTCATAAACTTGTCCTT 59.831 37.037 0.00 0.00 0.00 3.36
318 319 8.827677 GCTATTATCGTCATAAACTTGTCCTTT 58.172 33.333 0.00 0.00 0.00 3.11
342 343 7.945033 TTTTGCACCAAACTCAATAAGAATC 57.055 32.000 0.00 0.00 32.79 2.52
343 344 6.647334 TTGCACCAAACTCAATAAGAATCA 57.353 33.333 0.00 0.00 0.00 2.57
344 345 6.839124 TGCACCAAACTCAATAAGAATCAT 57.161 33.333 0.00 0.00 0.00 2.45
345 346 7.230849 TGCACCAAACTCAATAAGAATCATT 57.769 32.000 0.00 0.00 0.00 2.57
346 347 7.669427 TGCACCAAACTCAATAAGAATCATTT 58.331 30.769 0.00 0.00 0.00 2.32
347 348 8.149647 TGCACCAAACTCAATAAGAATCATTTT 58.850 29.630 0.00 0.00 0.00 1.82
348 349 8.992073 GCACCAAACTCAATAAGAATCATTTTT 58.008 29.630 0.00 0.00 0.00 1.94
371 372 7.917720 TTTGTCAAAACTTTTTATACGAGCC 57.082 32.000 0.00 0.00 0.00 4.70
372 373 6.870971 TGTCAAAACTTTTTATACGAGCCT 57.129 33.333 0.00 0.00 0.00 4.58
373 374 7.966246 TGTCAAAACTTTTTATACGAGCCTA 57.034 32.000 0.00 0.00 0.00 3.93
374 375 8.025243 TGTCAAAACTTTTTATACGAGCCTAG 57.975 34.615 0.00 0.00 0.00 3.02
375 376 6.959871 GTCAAAACTTTTTATACGAGCCTAGC 59.040 38.462 0.00 0.00 0.00 3.42
376 377 6.651643 TCAAAACTTTTTATACGAGCCTAGCA 59.348 34.615 0.00 0.00 0.00 3.49
377 378 6.418585 AAACTTTTTATACGAGCCTAGCAC 57.581 37.500 0.00 0.00 0.00 4.40
378 379 4.439968 ACTTTTTATACGAGCCTAGCACC 58.560 43.478 0.00 0.00 0.00 5.01
379 380 4.161754 ACTTTTTATACGAGCCTAGCACCT 59.838 41.667 0.00 0.00 0.00 4.00
380 381 3.728076 TTTATACGAGCCTAGCACCTG 57.272 47.619 0.00 0.00 0.00 4.00
381 382 2.651382 TATACGAGCCTAGCACCTGA 57.349 50.000 0.00 0.00 0.00 3.86
382 383 2.002505 ATACGAGCCTAGCACCTGAT 57.997 50.000 0.00 0.00 0.00 2.90
383 384 1.319541 TACGAGCCTAGCACCTGATC 58.680 55.000 0.00 0.00 0.00 2.92
384 385 1.007964 CGAGCCTAGCACCTGATCG 60.008 63.158 0.00 0.00 0.00 3.69
385 386 1.729470 CGAGCCTAGCACCTGATCGT 61.729 60.000 0.00 0.00 0.00 3.73
386 387 0.249238 GAGCCTAGCACCTGATCGTG 60.249 60.000 0.00 0.00 36.80 4.35
387 388 0.972983 AGCCTAGCACCTGATCGTGT 60.973 55.000 3.18 0.00 36.08 4.49
388 389 0.108138 GCCTAGCACCTGATCGTGTT 60.108 55.000 3.18 0.02 36.08 3.32
389 390 1.676014 GCCTAGCACCTGATCGTGTTT 60.676 52.381 3.18 0.00 36.08 2.83
390 391 2.002586 CCTAGCACCTGATCGTGTTTG 58.997 52.381 3.18 0.00 36.08 2.93
391 392 2.353704 CCTAGCACCTGATCGTGTTTGA 60.354 50.000 3.18 0.00 36.08 2.69
392 393 2.479566 AGCACCTGATCGTGTTTGAT 57.520 45.000 3.18 0.00 36.08 2.57
393 394 2.783135 AGCACCTGATCGTGTTTGATT 58.217 42.857 3.18 0.00 36.08 2.57
394 395 2.744202 AGCACCTGATCGTGTTTGATTC 59.256 45.455 3.18 0.00 36.08 2.52
395 396 2.483877 GCACCTGATCGTGTTTGATTCA 59.516 45.455 3.18 0.00 36.08 2.57
396 397 3.058293 GCACCTGATCGTGTTTGATTCAA 60.058 43.478 0.00 0.00 36.08 2.69
397 398 4.556501 GCACCTGATCGTGTTTGATTCAAA 60.557 41.667 7.74 7.74 36.08 2.69
398 399 5.518812 CACCTGATCGTGTTTGATTCAAAA 58.481 37.500 13.21 0.00 35.03 2.44
399 400 5.976534 CACCTGATCGTGTTTGATTCAAAAA 59.023 36.000 13.21 5.65 35.03 1.94
423 424 8.688747 AAAAAGGATTCATAATTTTTGGCACA 57.311 26.923 0.00 0.00 34.49 4.57
424 425 8.866970 AAAAGGATTCATAATTTTTGGCACAT 57.133 26.923 0.00 0.00 39.30 3.21
425 426 9.956640 AAAAGGATTCATAATTTTTGGCACATA 57.043 25.926 0.00 0.00 39.30 2.29
465 466 3.880846 CTCCGCCCAATCGCTTGC 61.881 66.667 0.00 0.00 0.00 4.01
522 523 1.093972 TTCATGCGCCATTTGTCGAT 58.906 45.000 4.18 0.00 0.00 3.59
544 545 1.302511 AACTTGCCACCGCGATTCT 60.303 52.632 8.23 0.00 38.08 2.40
559 560 0.969149 ATTCTGTCCGTGCTCACTCA 59.031 50.000 0.00 0.00 0.00 3.41
626 635 2.144078 TCCGTCCCTCCAAGTTGCA 61.144 57.895 0.00 0.00 0.00 4.08
633 642 1.372128 CTCCAAGTTGCAAAGCGCC 60.372 57.895 2.29 0.00 41.33 6.53
641 650 4.749245 AGTTGCAAAGCGCCATATATAC 57.251 40.909 2.29 0.00 41.33 1.47
642 651 4.389374 AGTTGCAAAGCGCCATATATACT 58.611 39.130 2.29 0.00 41.33 2.12
643 652 4.821805 AGTTGCAAAGCGCCATATATACTT 59.178 37.500 2.29 0.00 41.33 2.24
764 777 4.103103 CGAGACGAGGCTGCGTGA 62.103 66.667 14.92 0.00 45.72 4.35
787 818 2.040544 CGCCAGGTTTCGGAAGCAT 61.041 57.895 8.62 0.00 35.74 3.79
791 822 0.443869 CAGGTTTCGGAAGCATCGTG 59.556 55.000 8.62 0.00 35.74 4.35
831 868 2.022129 CGTCTCGGCACTTGGACAC 61.022 63.158 0.00 0.00 0.00 3.67
832 869 2.022129 GTCTCGGCACTTGGACACG 61.022 63.158 0.00 0.00 0.00 4.49
833 870 3.414700 CTCGGCACTTGGACACGC 61.415 66.667 0.00 0.00 0.00 5.34
834 871 4.980805 TCGGCACTTGGACACGCC 62.981 66.667 0.00 0.00 41.30 5.68
874 911 1.134220 TCACGCAAAACTGGTTCCTCT 60.134 47.619 0.00 0.00 0.00 3.69
879 916 2.554462 GCAAAACTGGTTCCTCTTCCTC 59.446 50.000 0.00 0.00 0.00 3.71
881 918 0.977395 AACTGGTTCCTCTTCCTCCG 59.023 55.000 0.00 0.00 0.00 4.63
882 919 0.178929 ACTGGTTCCTCTTCCTCCGT 60.179 55.000 0.00 0.00 0.00 4.69
886 923 1.906824 TTCCTCTTCCTCCGTGCGT 60.907 57.895 0.00 0.00 0.00 5.24
887 924 2.125912 CCTCTTCCTCCGTGCGTG 60.126 66.667 0.00 0.00 0.00 5.34
889 926 4.717629 TCTTCCTCCGTGCGTGCG 62.718 66.667 0.00 0.00 0.00 5.34
911 954 1.964373 GCGGTTTTCTTCCCAGCGA 60.964 57.895 0.00 0.00 33.26 4.93
960 1025 2.282180 CACCTCCACCAAACCCCG 60.282 66.667 0.00 0.00 0.00 5.73
992 1068 4.379243 CCAGGGCGCTTCAGTCGT 62.379 66.667 7.64 0.00 0.00 4.34
996 1072 2.811317 GGCGCTTCAGTCGTGGAG 60.811 66.667 7.64 0.00 31.41 3.86
1123 1219 4.394712 CCAAGCTCTTCGGCCCGT 62.395 66.667 1.63 0.00 0.00 5.28
1182 1310 0.110867 CGACGAATTTGCGTTGCTCA 60.111 50.000 0.00 0.00 45.72 4.26
1183 1311 1.318251 GACGAATTTGCGTTGCTCAC 58.682 50.000 0.00 0.00 45.72 3.51
1254 1405 4.493747 GACCGACGAGAAGGGCGG 62.494 72.222 5.11 5.11 44.11 6.13
1384 1535 4.803426 CTGCTCGTGCGGGACTCC 62.803 72.222 10.45 0.00 43.34 3.85
1590 1750 2.125350 CGGCAACCTCCTGCTCTC 60.125 66.667 0.00 0.00 42.25 3.20
1596 1761 2.149578 CAACCTCCTGCTCTCAAACTG 58.850 52.381 0.00 0.00 0.00 3.16
1600 1765 2.538437 CTCCTGCTCTCAAACTGATCG 58.462 52.381 0.00 0.00 0.00 3.69
1615 1780 6.428385 AACTGATCGTCCTTGATTTGATTC 57.572 37.500 0.00 0.00 0.00 2.52
1617 1782 3.871006 TGATCGTCCTTGATTTGATTCGG 59.129 43.478 0.00 0.00 0.00 4.30
1618 1783 3.328382 TCGTCCTTGATTTGATTCGGT 57.672 42.857 0.00 0.00 0.00 4.69
1623 1788 5.116983 CGTCCTTGATTTGATTCGGTTTTTG 59.883 40.000 0.00 0.00 0.00 2.44
1624 1789 5.983118 GTCCTTGATTTGATTCGGTTTTTGT 59.017 36.000 0.00 0.00 0.00 2.83
1625 1790 6.143919 GTCCTTGATTTGATTCGGTTTTTGTC 59.856 38.462 0.00 0.00 0.00 3.18
1682 1852 6.689241 CGCTTGTTTGTGTGAAAATGTTACTA 59.311 34.615 0.00 0.00 0.00 1.82
1822 1998 0.867753 CCGTCTCTGCACGCTATCAC 60.868 60.000 0.00 0.00 38.52 3.06
1846 2022 2.831685 TTCGTGCCAGTGACTTGTAT 57.168 45.000 0.00 0.00 0.00 2.29
1857 3641 6.223852 CCAGTGACTTGTATGTTAGTGAGTT 58.776 40.000 0.00 0.00 31.17 3.01
1861 3835 6.479001 GTGACTTGTATGTTAGTGAGTTGTGT 59.521 38.462 0.00 0.00 0.00 3.72
1875 3849 5.001232 TGAGTTGTGTAATTTAGCCTGGTC 58.999 41.667 0.00 0.00 0.00 4.02
1906 3880 1.464997 GGATGCCTTCAAGTCGTGTTC 59.535 52.381 0.00 0.00 0.00 3.18
1917 3891 2.906354 AGTCGTGTTCAATATGGGAGC 58.094 47.619 0.00 0.00 0.00 4.70
1922 3896 2.945668 GTGTTCAATATGGGAGCTGGTC 59.054 50.000 0.00 0.00 0.00 4.02
1932 3906 2.608988 AGCTGGTCTGGTCCTGGG 60.609 66.667 0.00 0.00 0.00 4.45
1933 3907 4.416738 GCTGGTCTGGTCCTGGGC 62.417 72.222 0.00 0.00 0.00 5.36
1934 3908 2.930019 CTGGTCTGGTCCTGGGCA 60.930 66.667 0.00 0.00 0.00 5.36
1935 3909 3.249189 TGGTCTGGTCCTGGGCAC 61.249 66.667 0.00 0.00 0.00 5.01
1952 3926 3.357079 CCTGGCACAACGCTCCAC 61.357 66.667 0.00 0.00 41.91 4.02
1953 3927 3.357079 CTGGCACAACGCTCCACC 61.357 66.667 0.00 0.00 41.91 4.61
1978 3952 2.745884 TCCGCGGCATTTCAGGTG 60.746 61.111 23.51 0.00 0.00 4.00
1979 3953 3.814268 CCGCGGCATTTCAGGTGG 61.814 66.667 14.67 0.00 0.00 4.61
1980 3954 2.745884 CGCGGCATTTCAGGTGGA 60.746 61.111 0.00 0.00 0.00 4.02
1981 3955 2.114670 CGCGGCATTTCAGGTGGAT 61.115 57.895 0.00 0.00 0.00 3.41
2184 4158 0.601841 ACCGGTTTTCTCGCGTCAAT 60.602 50.000 0.00 0.00 0.00 2.57
2416 4390 9.355916 GGGTAAATGGATAGAGCTATTTTCTTT 57.644 33.333 0.00 0.00 32.31 2.52
2454 4428 1.874019 CTCGAGTCAATCCGCCGTG 60.874 63.158 3.62 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 4.905429 TGACACAGATAGGCTTGCTAAAA 58.095 39.130 0.00 0.00 0.00 1.52
10 11 4.551702 TGACACAGATAGGCTTGCTAAA 57.448 40.909 0.00 0.00 0.00 1.85
11 12 4.551702 TTGACACAGATAGGCTTGCTAA 57.448 40.909 0.00 0.00 0.00 3.09
12 13 4.760530 ATTGACACAGATAGGCTTGCTA 57.239 40.909 0.00 0.00 0.00 3.49
13 14 3.641434 ATTGACACAGATAGGCTTGCT 57.359 42.857 0.00 0.00 0.00 3.91
14 15 3.691118 TCAATTGACACAGATAGGCTTGC 59.309 43.478 3.38 0.00 0.00 4.01
15 16 5.645067 TCTTCAATTGACACAGATAGGCTTG 59.355 40.000 7.89 0.00 0.00 4.01
16 17 5.809001 TCTTCAATTGACACAGATAGGCTT 58.191 37.500 7.89 0.00 0.00 4.35
17 18 5.046014 ACTCTTCAATTGACACAGATAGGCT 60.046 40.000 7.89 0.00 0.00 4.58
18 19 5.181748 ACTCTTCAATTGACACAGATAGGC 58.818 41.667 7.89 0.00 0.00 3.93
19 20 8.954950 AATACTCTTCAATTGACACAGATAGG 57.045 34.615 7.89 0.32 0.00 2.57
23 24 8.567948 GGAAAAATACTCTTCAATTGACACAGA 58.432 33.333 7.89 7.86 0.00 3.41
24 25 7.809806 GGGAAAAATACTCTTCAATTGACACAG 59.190 37.037 7.89 3.32 0.00 3.66
25 26 7.255801 GGGGAAAAATACTCTTCAATTGACACA 60.256 37.037 7.89 0.00 0.00 3.72
26 27 7.090808 GGGGAAAAATACTCTTCAATTGACAC 58.909 38.462 7.89 0.00 0.00 3.67
27 28 6.210584 GGGGGAAAAATACTCTTCAATTGACA 59.789 38.462 7.89 0.00 0.00 3.58
28 29 6.437477 AGGGGGAAAAATACTCTTCAATTGAC 59.563 38.462 7.89 0.00 0.00 3.18
29 30 6.561294 AGGGGGAAAAATACTCTTCAATTGA 58.439 36.000 3.38 3.38 0.00 2.57
30 31 6.857437 AGGGGGAAAAATACTCTTCAATTG 57.143 37.500 0.00 0.00 0.00 2.32
31 32 8.981659 CATAAGGGGGAAAAATACTCTTCAATT 58.018 33.333 0.00 0.00 0.00 2.32
32 33 7.565029 CCATAAGGGGGAAAAATACTCTTCAAT 59.435 37.037 0.00 0.00 0.00 2.57
33 34 6.895204 CCATAAGGGGGAAAAATACTCTTCAA 59.105 38.462 0.00 0.00 0.00 2.69
34 35 6.431722 CCATAAGGGGGAAAAATACTCTTCA 58.568 40.000 0.00 0.00 0.00 3.02
35 36 5.302059 GCCATAAGGGGGAAAAATACTCTTC 59.698 44.000 0.00 0.00 37.04 2.87
36 37 5.208890 GCCATAAGGGGGAAAAATACTCTT 58.791 41.667 0.00 0.00 37.04 2.85
37 38 4.231890 TGCCATAAGGGGGAAAAATACTCT 59.768 41.667 0.00 0.00 37.04 3.24
38 39 4.542697 TGCCATAAGGGGGAAAAATACTC 58.457 43.478 0.00 0.00 37.04 2.59
39 40 4.546674 CTGCCATAAGGGGGAAAAATACT 58.453 43.478 0.00 0.00 37.04 2.12
40 41 3.069586 GCTGCCATAAGGGGGAAAAATAC 59.930 47.826 0.00 0.00 37.04 1.89
41 42 3.304829 GCTGCCATAAGGGGGAAAAATA 58.695 45.455 0.00 0.00 37.04 1.40
42 43 2.118679 GCTGCCATAAGGGGGAAAAAT 58.881 47.619 0.00 0.00 37.04 1.82
43 44 1.203237 TGCTGCCATAAGGGGGAAAAA 60.203 47.619 0.00 0.00 37.04 1.94
44 45 0.411452 TGCTGCCATAAGGGGGAAAA 59.589 50.000 0.00 0.00 37.04 2.29
45 46 0.636101 ATGCTGCCATAAGGGGGAAA 59.364 50.000 0.00 0.00 37.04 3.13
46 47 0.106066 CATGCTGCCATAAGGGGGAA 60.106 55.000 0.00 0.00 37.04 3.97
47 48 1.288508 ACATGCTGCCATAAGGGGGA 61.289 55.000 0.00 0.00 37.04 4.81
48 49 0.478072 TACATGCTGCCATAAGGGGG 59.522 55.000 0.00 0.00 37.04 5.40
49 50 1.609208 GTACATGCTGCCATAAGGGG 58.391 55.000 0.00 0.00 37.04 4.79
50 51 1.229428 CGTACATGCTGCCATAAGGG 58.771 55.000 0.00 0.00 40.85 3.95
51 52 1.953559 ACGTACATGCTGCCATAAGG 58.046 50.000 0.00 0.00 38.23 2.69
52 53 3.736252 GTCTACGTACATGCTGCCATAAG 59.264 47.826 0.00 0.00 0.00 1.73
53 54 3.383505 AGTCTACGTACATGCTGCCATAA 59.616 43.478 0.00 0.00 0.00 1.90
54 55 2.956333 AGTCTACGTACATGCTGCCATA 59.044 45.455 0.00 0.00 0.00 2.74
55 56 1.757118 AGTCTACGTACATGCTGCCAT 59.243 47.619 0.00 0.00 0.00 4.40
56 57 1.182667 AGTCTACGTACATGCTGCCA 58.817 50.000 0.00 0.00 0.00 4.92
57 58 2.098607 TGTAGTCTACGTACATGCTGCC 59.901 50.000 5.55 0.00 0.00 4.85
58 59 3.416119 TGTAGTCTACGTACATGCTGC 57.584 47.619 5.55 0.00 0.00 5.25
59 60 5.231265 TCTTGTAGTCTACGTACATGCTG 57.769 43.478 5.55 0.00 30.54 4.41
60 61 5.357314 ACATCTTGTAGTCTACGTACATGCT 59.643 40.000 5.55 0.00 30.54 3.79
61 62 5.455849 CACATCTTGTAGTCTACGTACATGC 59.544 44.000 5.55 0.00 30.54 4.06
62 63 6.782150 TCACATCTTGTAGTCTACGTACATG 58.218 40.000 5.55 7.31 30.54 3.21
63 64 6.038382 CCTCACATCTTGTAGTCTACGTACAT 59.962 42.308 5.55 0.00 30.54 2.29
64 65 5.353400 CCTCACATCTTGTAGTCTACGTACA 59.647 44.000 5.55 0.00 0.00 2.90
65 66 5.353678 ACCTCACATCTTGTAGTCTACGTAC 59.646 44.000 5.55 0.00 0.00 3.67
66 67 5.353400 CACCTCACATCTTGTAGTCTACGTA 59.647 44.000 5.55 0.00 0.00 3.57
67 68 4.156190 CACCTCACATCTTGTAGTCTACGT 59.844 45.833 5.55 0.00 0.00 3.57
68 69 4.395231 TCACCTCACATCTTGTAGTCTACG 59.605 45.833 5.55 0.00 0.00 3.51
69 70 5.648526 TCTCACCTCACATCTTGTAGTCTAC 59.351 44.000 2.81 2.81 0.00 2.59
70 71 5.816682 TCTCACCTCACATCTTGTAGTCTA 58.183 41.667 0.00 0.00 0.00 2.59
71 72 4.667573 TCTCACCTCACATCTTGTAGTCT 58.332 43.478 0.00 0.00 0.00 3.24
72 73 5.392767 TTCTCACCTCACATCTTGTAGTC 57.607 43.478 0.00 0.00 0.00 2.59
73 74 5.808366 TTTCTCACCTCACATCTTGTAGT 57.192 39.130 0.00 0.00 0.00 2.73
74 75 7.819415 TGTATTTTCTCACCTCACATCTTGTAG 59.181 37.037 0.00 0.00 0.00 2.74
75 76 7.676004 TGTATTTTCTCACCTCACATCTTGTA 58.324 34.615 0.00 0.00 0.00 2.41
76 77 6.533730 TGTATTTTCTCACCTCACATCTTGT 58.466 36.000 0.00 0.00 0.00 3.16
77 78 7.465111 CGATGTATTTTCTCACCTCACATCTTG 60.465 40.741 9.38 0.00 38.94 3.02
78 79 6.536582 CGATGTATTTTCTCACCTCACATCTT 59.463 38.462 9.38 0.00 38.94 2.40
79 80 6.045318 CGATGTATTTTCTCACCTCACATCT 58.955 40.000 9.38 0.00 38.94 2.90
80 81 5.235186 CCGATGTATTTTCTCACCTCACATC 59.765 44.000 0.00 0.00 38.15 3.06
81 82 5.118990 CCGATGTATTTTCTCACCTCACAT 58.881 41.667 0.00 0.00 0.00 3.21
82 83 4.020573 ACCGATGTATTTTCTCACCTCACA 60.021 41.667 0.00 0.00 0.00 3.58
83 84 4.330074 CACCGATGTATTTTCTCACCTCAC 59.670 45.833 0.00 0.00 0.00 3.51
84 85 4.221924 TCACCGATGTATTTTCTCACCTCA 59.778 41.667 0.00 0.00 0.00 3.86
85 86 4.755411 TCACCGATGTATTTTCTCACCTC 58.245 43.478 0.00 0.00 0.00 3.85
86 87 4.819105 TCACCGATGTATTTTCTCACCT 57.181 40.909 0.00 0.00 0.00 4.00
87 88 5.360591 AGATCACCGATGTATTTTCTCACC 58.639 41.667 0.00 0.00 0.00 4.02
88 89 5.174035 CGAGATCACCGATGTATTTTCTCAC 59.826 44.000 0.00 0.00 0.00 3.51
89 90 5.281727 CGAGATCACCGATGTATTTTCTCA 58.718 41.667 0.00 0.00 0.00 3.27
90 91 4.681942 CCGAGATCACCGATGTATTTTCTC 59.318 45.833 8.78 0.00 0.00 2.87
91 92 4.501571 CCCGAGATCACCGATGTATTTTCT 60.502 45.833 8.78 0.00 0.00 2.52
92 93 3.741344 CCCGAGATCACCGATGTATTTTC 59.259 47.826 8.78 0.00 0.00 2.29
93 94 3.134081 ACCCGAGATCACCGATGTATTTT 59.866 43.478 8.78 0.00 0.00 1.82
94 95 2.698797 ACCCGAGATCACCGATGTATTT 59.301 45.455 8.78 0.00 0.00 1.40
95 96 2.035961 CACCCGAGATCACCGATGTATT 59.964 50.000 8.78 0.00 0.00 1.89
96 97 1.613925 CACCCGAGATCACCGATGTAT 59.386 52.381 8.78 0.00 0.00 2.29
97 98 1.029681 CACCCGAGATCACCGATGTA 58.970 55.000 8.78 0.00 0.00 2.29
98 99 1.816537 CACCCGAGATCACCGATGT 59.183 57.895 8.78 3.78 0.00 3.06
99 100 1.592669 GCACCCGAGATCACCGATG 60.593 63.158 8.78 7.81 0.00 3.84
100 101 2.815308 GCACCCGAGATCACCGAT 59.185 61.111 8.78 0.00 0.00 4.18
101 102 3.822192 CGCACCCGAGATCACCGA 61.822 66.667 8.78 0.00 36.29 4.69
102 103 3.822192 TCGCACCCGAGATCACCG 61.822 66.667 0.00 0.00 38.82 4.94
116 117 2.383527 GCATATAGGGTGCGCTCGC 61.384 63.158 17.62 17.62 42.35 5.03
117 118 0.599991 TTGCATATAGGGTGCGCTCG 60.600 55.000 9.73 0.00 45.37 5.03
118 119 1.593196 TTTGCATATAGGGTGCGCTC 58.407 50.000 9.73 4.47 45.37 5.03
119 120 2.051334 TTTTGCATATAGGGTGCGCT 57.949 45.000 9.73 0.00 45.37 5.92
120 121 2.861462 TTTTTGCATATAGGGTGCGC 57.139 45.000 0.00 0.00 45.37 6.09
228 229 9.404456 TCAGGATGCAACGAAAGTCATTCTCTA 62.404 40.741 0.00 0.00 39.36 2.43
229 230 8.689626 TCAGGATGCAACGAAAGTCATTCTCT 62.690 42.308 0.00 0.00 39.36 3.10
230 231 6.591340 TCAGGATGCAACGAAAGTCATTCTC 61.591 44.000 0.00 0.00 39.36 2.87
231 232 4.803924 TCAGGATGCAACGAAAGTCATTCT 60.804 41.667 0.00 0.00 39.36 2.40
232 233 3.436704 TCAGGATGCAACGAAAGTCATTC 59.563 43.478 0.00 0.00 39.36 2.67
233 234 3.411446 TCAGGATGCAACGAAAGTCATT 58.589 40.909 0.00 0.00 39.36 2.57
234 235 3.005554 CTCAGGATGCAACGAAAGTCAT 58.994 45.455 0.00 0.00 39.36 3.06
235 236 2.224281 ACTCAGGATGCAACGAAAGTCA 60.224 45.455 0.00 0.00 39.36 3.41
236 237 2.413453 GACTCAGGATGCAACGAAAGTC 59.587 50.000 0.00 0.00 39.36 3.01
237 238 2.417719 GACTCAGGATGCAACGAAAGT 58.582 47.619 0.00 0.00 41.90 2.66
238 239 1.391485 CGACTCAGGATGCAACGAAAG 59.609 52.381 0.00 0.00 34.76 2.62
239 240 1.000394 TCGACTCAGGATGCAACGAAA 60.000 47.619 0.00 0.00 34.76 3.46
240 241 0.601057 TCGACTCAGGATGCAACGAA 59.399 50.000 0.00 0.00 34.76 3.85
241 242 0.601057 TTCGACTCAGGATGCAACGA 59.399 50.000 0.00 0.00 34.76 3.85
242 243 0.994995 CTTCGACTCAGGATGCAACG 59.005 55.000 0.00 0.00 34.76 4.10
243 244 2.266554 CTCTTCGACTCAGGATGCAAC 58.733 52.381 0.00 0.00 34.76 4.17
244 245 1.895798 ACTCTTCGACTCAGGATGCAA 59.104 47.619 0.00 0.00 34.76 4.08
245 246 1.474478 GACTCTTCGACTCAGGATGCA 59.526 52.381 0.00 0.00 34.76 3.96
246 247 2.202295 GACTCTTCGACTCAGGATGC 57.798 55.000 0.00 0.00 34.76 3.91
257 258 3.381949 AGTGTTTTTCTCCGACTCTTCG 58.618 45.455 0.00 0.00 45.44 3.79
258 259 9.235537 GTATATAGTGTTTTTCTCCGACTCTTC 57.764 37.037 0.00 0.00 0.00 2.87
259 260 8.968969 AGTATATAGTGTTTTTCTCCGACTCTT 58.031 33.333 0.00 0.00 0.00 2.85
260 261 8.407064 CAGTATATAGTGTTTTTCTCCGACTCT 58.593 37.037 9.13 0.00 0.00 3.24
261 262 8.189460 ACAGTATATAGTGTTTTTCTCCGACTC 58.811 37.037 16.10 0.00 36.50 3.36
262 263 8.064336 ACAGTATATAGTGTTTTTCTCCGACT 57.936 34.615 16.10 0.00 36.50 4.18
263 264 9.230932 GTACAGTATATAGTGTTTTTCTCCGAC 57.769 37.037 24.61 11.98 40.19 4.79
264 265 8.959548 TGTACAGTATATAGTGTTTTTCTCCGA 58.040 33.333 24.61 4.59 40.19 4.55
265 266 9.017669 GTGTACAGTATATAGTGTTTTTCTCCG 57.982 37.037 24.61 0.00 40.19 4.63
266 267 9.017669 CGTGTACAGTATATAGTGTTTTTCTCC 57.982 37.037 24.61 8.53 40.19 3.71
267 268 8.529911 GCGTGTACAGTATATAGTGTTTTTCTC 58.470 37.037 24.61 13.72 40.19 2.87
268 269 8.248945 AGCGTGTACAGTATATAGTGTTTTTCT 58.751 33.333 24.61 14.14 40.19 2.52
269 270 8.403606 AGCGTGTACAGTATATAGTGTTTTTC 57.596 34.615 24.61 14.56 40.19 2.29
275 276 9.634300 CGATAATAGCGTGTACAGTATATAGTG 57.366 37.037 14.83 14.83 0.00 2.74
276 277 9.376075 ACGATAATAGCGTGTACAGTATATAGT 57.624 33.333 1.74 0.00 40.94 2.12
277 278 9.846738 GACGATAATAGCGTGTACAGTATATAG 57.153 37.037 8.71 0.00 42.77 1.31
278 279 9.369904 TGACGATAATAGCGTGTACAGTATATA 57.630 33.333 8.71 0.00 42.77 0.86
279 280 8.260270 TGACGATAATAGCGTGTACAGTATAT 57.740 34.615 8.71 0.00 42.77 0.86
280 281 7.656707 TGACGATAATAGCGTGTACAGTATA 57.343 36.000 8.71 0.00 42.77 1.47
281 282 6.549912 TGACGATAATAGCGTGTACAGTAT 57.450 37.500 8.71 0.00 42.77 2.12
282 283 5.989551 TGACGATAATAGCGTGTACAGTA 57.010 39.130 8.71 0.00 42.77 2.74
283 284 4.888038 TGACGATAATAGCGTGTACAGT 57.112 40.909 8.71 0.00 42.77 3.55
284 285 7.590322 AGTTTATGACGATAATAGCGTGTACAG 59.410 37.037 8.71 0.00 42.77 2.74
285 286 7.420002 AGTTTATGACGATAATAGCGTGTACA 58.580 34.615 8.71 0.40 42.77 2.90
286 287 7.848716 AGTTTATGACGATAATAGCGTGTAC 57.151 36.000 8.71 0.00 42.77 2.90
287 288 7.916977 ACAAGTTTATGACGATAATAGCGTGTA 59.083 33.333 8.71 0.00 42.77 2.90
288 289 6.755141 ACAAGTTTATGACGATAATAGCGTGT 59.245 34.615 8.71 0.00 42.77 4.49
289 290 7.161829 ACAAGTTTATGACGATAATAGCGTG 57.838 36.000 8.71 0.00 42.77 5.34
290 291 6.420008 GGACAAGTTTATGACGATAATAGCGT 59.580 38.462 2.29 2.29 45.79 5.07
291 292 6.641314 AGGACAAGTTTATGACGATAATAGCG 59.359 38.462 0.00 0.00 0.00 4.26
292 293 7.948278 AGGACAAGTTTATGACGATAATAGC 57.052 36.000 0.00 0.00 0.00 2.97
317 318 7.984050 TGATTCTTATTGAGTTTGGTGCAAAAA 59.016 29.630 0.00 0.00 35.03 1.94
318 319 7.495901 TGATTCTTATTGAGTTTGGTGCAAAA 58.504 30.769 0.00 0.00 35.03 2.44
319 320 7.048629 TGATTCTTATTGAGTTTGGTGCAAA 57.951 32.000 0.00 0.00 0.00 3.68
320 321 6.647334 TGATTCTTATTGAGTTTGGTGCAA 57.353 33.333 0.00 0.00 0.00 4.08
321 322 6.839124 ATGATTCTTATTGAGTTTGGTGCA 57.161 33.333 0.00 0.00 0.00 4.57
322 323 8.538409 AAAATGATTCTTATTGAGTTTGGTGC 57.462 30.769 0.00 0.00 0.00 5.01
345 346 8.809478 GGCTCGTATAAAAAGTTTTGACAAAAA 58.191 29.630 14.75 0.00 32.82 1.94
346 347 8.192110 AGGCTCGTATAAAAAGTTTTGACAAAA 58.808 29.630 9.30 9.30 0.00 2.44
347 348 7.708998 AGGCTCGTATAAAAAGTTTTGACAAA 58.291 30.769 0.61 0.00 0.00 2.83
348 349 7.266922 AGGCTCGTATAAAAAGTTTTGACAA 57.733 32.000 0.61 0.00 0.00 3.18
349 350 6.870971 AGGCTCGTATAAAAAGTTTTGACA 57.129 33.333 0.61 0.00 0.00 3.58
350 351 6.959871 GCTAGGCTCGTATAAAAAGTTTTGAC 59.040 38.462 0.61 0.47 0.00 3.18
351 352 6.651643 TGCTAGGCTCGTATAAAAAGTTTTGA 59.348 34.615 0.61 0.00 0.00 2.69
352 353 6.741358 GTGCTAGGCTCGTATAAAAAGTTTTG 59.259 38.462 0.61 0.00 0.00 2.44
353 354 6.128090 GGTGCTAGGCTCGTATAAAAAGTTTT 60.128 38.462 0.00 0.00 0.00 2.43
354 355 5.353400 GGTGCTAGGCTCGTATAAAAAGTTT 59.647 40.000 0.00 0.00 0.00 2.66
355 356 4.874396 GGTGCTAGGCTCGTATAAAAAGTT 59.126 41.667 0.00 0.00 0.00 2.66
356 357 4.161754 AGGTGCTAGGCTCGTATAAAAAGT 59.838 41.667 0.00 0.00 0.00 2.66
357 358 4.508124 CAGGTGCTAGGCTCGTATAAAAAG 59.492 45.833 0.00 0.00 0.00 2.27
358 359 4.160814 TCAGGTGCTAGGCTCGTATAAAAA 59.839 41.667 0.00 0.00 0.00 1.94
359 360 3.702548 TCAGGTGCTAGGCTCGTATAAAA 59.297 43.478 0.00 0.00 0.00 1.52
360 361 3.293337 TCAGGTGCTAGGCTCGTATAAA 58.707 45.455 0.00 0.00 0.00 1.40
361 362 2.940158 TCAGGTGCTAGGCTCGTATAA 58.060 47.619 0.00 0.00 0.00 0.98
362 363 2.651382 TCAGGTGCTAGGCTCGTATA 57.349 50.000 0.00 0.00 0.00 1.47
363 364 1.889829 GATCAGGTGCTAGGCTCGTAT 59.110 52.381 0.00 0.00 0.00 3.06
364 365 1.319541 GATCAGGTGCTAGGCTCGTA 58.680 55.000 0.00 0.00 0.00 3.43
365 366 1.729470 CGATCAGGTGCTAGGCTCGT 61.729 60.000 0.00 0.00 0.00 4.18
366 367 1.007964 CGATCAGGTGCTAGGCTCG 60.008 63.158 0.00 0.00 0.00 5.03
367 368 0.249238 CACGATCAGGTGCTAGGCTC 60.249 60.000 0.00 0.00 0.00 4.70
368 369 0.972983 ACACGATCAGGTGCTAGGCT 60.973 55.000 0.00 0.00 41.65 4.58
369 370 0.108138 AACACGATCAGGTGCTAGGC 60.108 55.000 0.00 0.00 41.65 3.93
370 371 2.002586 CAAACACGATCAGGTGCTAGG 58.997 52.381 0.00 0.00 41.65 3.02
371 372 2.959516 TCAAACACGATCAGGTGCTAG 58.040 47.619 0.00 0.00 41.65 3.42
372 373 3.610040 ATCAAACACGATCAGGTGCTA 57.390 42.857 0.00 0.00 41.65 3.49
373 374 2.479566 ATCAAACACGATCAGGTGCT 57.520 45.000 0.00 0.00 41.65 4.40
374 375 2.483877 TGAATCAAACACGATCAGGTGC 59.516 45.455 0.00 0.00 41.65 5.01
375 376 4.747540 TTGAATCAAACACGATCAGGTG 57.252 40.909 0.00 0.00 43.54 4.00
376 377 5.766150 TTTTGAATCAAACACGATCAGGT 57.234 34.783 8.06 0.00 32.79 4.00
398 399 8.688747 TGTGCCAAAAATTATGAATCCTTTTT 57.311 26.923 0.00 0.00 32.57 1.94
399 400 8.866970 ATGTGCCAAAAATTATGAATCCTTTT 57.133 26.923 0.00 0.00 0.00 2.27
402 403 9.550406 CAATATGTGCCAAAAATTATGAATCCT 57.450 29.630 0.00 0.00 0.00 3.24
403 404 8.776470 CCAATATGTGCCAAAAATTATGAATCC 58.224 33.333 0.00 0.00 0.00 3.01
404 405 9.545105 TCCAATATGTGCCAAAAATTATGAATC 57.455 29.630 0.00 0.00 0.00 2.52
406 407 9.327628 CATCCAATATGTGCCAAAAATTATGAA 57.672 29.630 0.00 0.00 0.00 2.57
407 408 7.441760 GCATCCAATATGTGCCAAAAATTATGA 59.558 33.333 0.00 0.00 32.88 2.15
408 409 7.569774 CGCATCCAATATGTGCCAAAAATTATG 60.570 37.037 0.00 0.00 35.51 1.90
409 410 6.424509 CGCATCCAATATGTGCCAAAAATTAT 59.575 34.615 0.00 0.00 35.51 1.28
410 411 5.752472 CGCATCCAATATGTGCCAAAAATTA 59.248 36.000 0.00 0.00 35.51 1.40
411 412 4.571580 CGCATCCAATATGTGCCAAAAATT 59.428 37.500 0.00 0.00 35.51 1.82
412 413 4.121317 CGCATCCAATATGTGCCAAAAAT 58.879 39.130 0.00 0.00 35.51 1.82
413 414 3.056250 ACGCATCCAATATGTGCCAAAAA 60.056 39.130 0.00 0.00 35.51 1.94
414 415 2.495270 ACGCATCCAATATGTGCCAAAA 59.505 40.909 0.00 0.00 35.51 2.44
415 416 2.098614 ACGCATCCAATATGTGCCAAA 58.901 42.857 0.00 0.00 35.51 3.28
416 417 1.761449 ACGCATCCAATATGTGCCAA 58.239 45.000 0.00 0.00 35.51 4.52
417 418 1.761449 AACGCATCCAATATGTGCCA 58.239 45.000 0.00 0.00 35.51 4.92
418 419 2.731217 GAAACGCATCCAATATGTGCC 58.269 47.619 0.00 0.00 35.51 5.01
419 420 2.031560 TCGAAACGCATCCAATATGTGC 59.968 45.455 0.00 0.00 33.15 4.57
420 421 3.942539 TCGAAACGCATCCAATATGTG 57.057 42.857 0.00 0.00 35.78 3.21
421 422 3.687212 TGTTCGAAACGCATCCAATATGT 59.313 39.130 0.00 0.00 0.00 2.29
422 423 4.271590 TGTTCGAAACGCATCCAATATG 57.728 40.909 0.00 0.00 0.00 1.78
423 424 4.955925 TTGTTCGAAACGCATCCAATAT 57.044 36.364 0.00 0.00 0.00 1.28
424 425 4.214545 ACTTTGTTCGAAACGCATCCAATA 59.785 37.500 0.00 0.00 0.00 1.90
425 426 3.004315 ACTTTGTTCGAAACGCATCCAAT 59.996 39.130 0.00 0.00 0.00 3.16
426 427 2.356382 ACTTTGTTCGAAACGCATCCAA 59.644 40.909 0.00 0.00 0.00 3.53
427 428 1.944024 ACTTTGTTCGAAACGCATCCA 59.056 42.857 0.00 0.00 0.00 3.41
529 530 2.031919 ACAGAATCGCGGTGGCAA 59.968 55.556 6.13 0.00 39.92 4.52
544 545 0.038251 GACATGAGTGAGCACGGACA 60.038 55.000 0.00 0.00 36.20 4.02
606 615 2.058675 CAACTTGGAGGGACGGACT 58.941 57.895 0.00 0.00 0.00 3.85
626 635 9.774413 AGTAAAGTAAAGTATATATGGCGCTTT 57.226 29.630 7.64 0.00 34.35 3.51
712 721 9.948964 TGCGTCTTATACTCCAATAGTAGTATA 57.051 33.333 0.00 0.00 43.90 1.47
713 722 8.859236 TGCGTCTTATACTCCAATAGTAGTAT 57.141 34.615 0.00 0.00 43.90 2.12
714 723 8.152898 TCTGCGTCTTATACTCCAATAGTAGTA 58.847 37.037 0.00 0.00 43.90 1.82
715 724 6.996879 TCTGCGTCTTATACTCCAATAGTAGT 59.003 38.462 0.00 0.00 43.90 2.73
716 725 7.388224 TCTCTGCGTCTTATACTCCAATAGTAG 59.612 40.741 0.00 0.00 43.90 2.57
717 726 7.172875 GTCTCTGCGTCTTATACTCCAATAGTA 59.827 40.741 0.00 0.00 44.76 1.82
718 727 6.016943 GTCTCTGCGTCTTATACTCCAATAGT 60.017 42.308 0.00 0.00 42.62 2.12
719 728 6.375377 GTCTCTGCGTCTTATACTCCAATAG 58.625 44.000 0.00 0.00 0.00 1.73
720 729 5.241064 GGTCTCTGCGTCTTATACTCCAATA 59.759 44.000 0.00 0.00 0.00 1.90
721 730 4.038162 GGTCTCTGCGTCTTATACTCCAAT 59.962 45.833 0.00 0.00 0.00 3.16
722 731 3.380637 GGTCTCTGCGTCTTATACTCCAA 59.619 47.826 0.00 0.00 0.00 3.53
723 732 2.950309 GGTCTCTGCGTCTTATACTCCA 59.050 50.000 0.00 0.00 0.00 3.86
724 733 2.031857 CGGTCTCTGCGTCTTATACTCC 60.032 54.545 0.00 0.00 0.00 3.85
725 734 2.613133 ACGGTCTCTGCGTCTTATACTC 59.387 50.000 0.00 0.00 0.00 2.59
726 735 2.613133 GACGGTCTCTGCGTCTTATACT 59.387 50.000 0.00 0.00 0.00 2.12
727 736 2.599377 CGACGGTCTCTGCGTCTTATAC 60.599 54.545 6.57 0.00 0.00 1.47
728 737 1.596260 CGACGGTCTCTGCGTCTTATA 59.404 52.381 6.57 0.00 0.00 0.98
729 738 0.377554 CGACGGTCTCTGCGTCTTAT 59.622 55.000 6.57 0.00 0.00 1.73
730 739 0.671472 TCGACGGTCTCTGCGTCTTA 60.671 55.000 6.57 0.00 0.00 2.10
767 780 3.788766 CTTCCGAAACCTGGCGCG 61.789 66.667 0.00 0.00 0.00 6.86
768 781 4.103103 GCTTCCGAAACCTGGCGC 62.103 66.667 0.00 0.00 0.00 6.53
805 842 2.033602 TGCCGAGACGAGGAGTGA 59.966 61.111 0.00 0.00 0.00 3.41
839 876 4.135153 TGAGGCTCGGCTTCGCTC 62.135 66.667 10.42 0.00 37.47 5.03
840 877 4.443266 GTGAGGCTCGGCTTCGCT 62.443 66.667 10.42 0.00 40.98 4.93
843 880 4.742201 TGCGTGAGGCTCGGCTTC 62.742 66.667 24.61 8.10 44.05 3.86
844 881 3.825160 TTTGCGTGAGGCTCGGCTT 62.825 57.895 24.61 0.00 44.05 4.35
849 886 1.166531 ACCAGTTTTGCGTGAGGCTC 61.167 55.000 7.79 7.79 44.05 4.70
887 924 4.753877 GAAGAAAACCGCGGGCGC 62.754 66.667 31.76 15.58 38.24 6.53
889 926 3.744719 GGGAAGAAAACCGCGGGC 61.745 66.667 31.76 15.59 0.00 6.13
890 927 2.281900 TGGGAAGAAAACCGCGGG 60.282 61.111 31.76 11.88 0.00 6.13
892 929 2.561373 GCTGGGAAGAAAACCGCG 59.439 61.111 0.00 0.00 0.00 6.46
895 932 1.335964 GCTTTCGCTGGGAAGAAAACC 60.336 52.381 7.24 0.00 36.14 3.27
896 933 1.335964 GGCTTTCGCTGGGAAGAAAAC 60.336 52.381 7.24 0.00 36.14 2.43
897 934 0.958822 GGCTTTCGCTGGGAAGAAAA 59.041 50.000 7.24 0.00 36.14 2.29
911 954 0.890996 CGGTTGCTTGAGGAGGCTTT 60.891 55.000 0.00 0.00 0.00 3.51
938 992 0.676782 GGTTTGGTGGAGGTGGATCG 60.677 60.000 0.00 0.00 0.00 3.69
939 993 0.323451 GGGTTTGGTGGAGGTGGATC 60.323 60.000 0.00 0.00 0.00 3.36
940 994 1.774300 GGGTTTGGTGGAGGTGGAT 59.226 57.895 0.00 0.00 0.00 3.41
942 996 2.117423 GGGGTTTGGTGGAGGTGG 59.883 66.667 0.00 0.00 0.00 4.61
944 998 4.280019 GCGGGGTTTGGTGGAGGT 62.280 66.667 0.00 0.00 0.00 3.85
960 1025 3.655810 CTGGTCTGGTGAGGAGCGC 62.656 68.421 0.00 0.00 34.38 5.92
964 1030 2.607750 GCCCTGGTCTGGTGAGGA 60.608 66.667 0.00 0.00 0.00 3.71
973 1039 2.435059 GACTGAAGCGCCCTGGTC 60.435 66.667 2.29 4.50 0.00 4.02
992 1068 1.695239 ATCAGCAGCATCCCCTCCA 60.695 57.895 0.00 0.00 0.00 3.86
996 1072 2.910994 GCCATCAGCAGCATCCCC 60.911 66.667 0.00 0.00 42.97 4.81
1104 1200 2.124942 GGGCCGAAGAGCTTGGAG 60.125 66.667 0.00 0.00 0.00 3.86
1105 1201 4.082523 CGGGCCGAAGAGCTTGGA 62.083 66.667 24.41 0.00 0.00 3.53
1156 1284 1.345176 GCAAATTCGTCGAGGCGAG 59.655 57.895 0.00 0.00 42.10 5.03
1168 1296 1.675483 TCAGTGTGAGCAACGCAAATT 59.325 42.857 5.98 0.00 42.06 1.82
1202 1353 2.561373 CCTTTCCCTGCGCGAAAC 59.439 61.111 12.10 0.00 0.00 2.78
1590 1750 5.611796 TCAAATCAAGGACGATCAGTTTG 57.388 39.130 0.00 0.00 0.00 2.93
1596 1761 3.871594 ACCGAATCAAATCAAGGACGATC 59.128 43.478 0.00 0.00 0.00 3.69
1600 1765 5.983118 ACAAAAACCGAATCAAATCAAGGAC 59.017 36.000 0.00 0.00 0.00 3.85
1615 1780 1.604755 TCGGGTGATTGACAAAAACCG 59.395 47.619 19.56 19.56 30.34 4.44
1617 1782 2.288458 TCGTCGGGTGATTGACAAAAAC 59.712 45.455 0.00 0.00 34.78 2.43
1618 1783 2.562635 TCGTCGGGTGATTGACAAAAA 58.437 42.857 0.00 0.00 34.78 1.94
1623 1788 0.174845 TGGATCGTCGGGTGATTGAC 59.825 55.000 0.00 0.00 0.00 3.18
1624 1789 0.459899 CTGGATCGTCGGGTGATTGA 59.540 55.000 0.00 0.00 0.00 2.57
1625 1790 0.175760 ACTGGATCGTCGGGTGATTG 59.824 55.000 0.00 0.00 0.00 2.67
1770 1946 4.273480 CGTCATGTTCAATCTACCAATCCC 59.727 45.833 0.00 0.00 0.00 3.85
1801 1977 0.592754 GATAGCGTGCAGAGACGGAC 60.593 60.000 0.00 0.00 39.81 4.79
1822 1998 0.036952 AGTCACTGGCACGAATCTGG 60.037 55.000 0.00 0.00 0.00 3.86
1846 2022 7.172532 CAGGCTAAATTACACAACTCACTAACA 59.827 37.037 0.00 0.00 0.00 2.41
1857 3641 3.585289 TCCAGACCAGGCTAAATTACACA 59.415 43.478 0.00 0.00 0.00 3.72
1861 3835 4.721776 AGACATCCAGACCAGGCTAAATTA 59.278 41.667 0.00 0.00 0.00 1.40
1875 3849 0.549950 AAGGCATCCCAGACATCCAG 59.450 55.000 0.00 0.00 0.00 3.86
1906 3880 1.492176 ACCAGACCAGCTCCCATATTG 59.508 52.381 0.00 0.00 0.00 1.90
1917 3891 2.930019 TGCCCAGGACCAGACCAG 60.930 66.667 0.00 0.00 0.00 4.00
1922 3896 4.039092 CCAGGTGCCCAGGACCAG 62.039 72.222 8.06 0.00 35.76 4.00
1957 3931 1.353103 CTGAAATGCCGCGGACATC 59.647 57.895 33.48 20.44 0.00 3.06
1961 3935 2.745884 CACCTGAAATGCCGCGGA 60.746 61.111 33.48 15.19 0.00 5.54
2184 4158 2.029369 CGGTCCGTTCCGTTGGAA 59.971 61.111 2.08 0.00 44.77 3.53
2288 4262 3.243569 GGGACTAGCTACAGTATGCAGTG 60.244 52.174 0.00 0.00 42.53 3.66
2290 4264 3.005261 CAGGGACTAGCTACAGTATGCAG 59.995 52.174 0.00 3.83 36.36 4.41
2294 4268 2.231529 CGCAGGGACTAGCTACAGTAT 58.768 52.381 0.00 0.00 36.02 2.12
2418 4392 2.437002 TCATACAAACGGCCGGCC 60.437 61.111 36.69 36.69 0.00 6.13
2454 4428 3.245315 CAGTGTAGCCGCGTACGC 61.245 66.667 29.83 29.83 38.22 4.42
2553 4530 4.083003 GGTCATGCCACTTTGTTTAATCGA 60.083 41.667 0.00 0.00 37.17 3.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.