Multiple sequence alignment - TraesCS4B01G301600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G301600 chr4B 100.000 4566 0 0 1 4566 588207881 588203316 0.000000e+00 8432.0
1 TraesCS4B01G301600 chr4B 87.500 48 4 2 477 523 105143670 105143716 2.000000e-03 54.7
2 TraesCS4B01G301600 chr4D 94.609 2263 101 9 2311 4566 468605043 468602795 0.000000e+00 3483.0
3 TraesCS4B01G301600 chr4D 87.752 1837 123 47 309 2094 468606818 468605033 0.000000e+00 2052.0
4 TraesCS4B01G301600 chr4D 87.338 308 31 7 2 308 468621547 468621247 3.380000e-91 346.0
5 TraesCS4B01G301600 chr4A 94.290 1401 69 6 2311 3703 2939887 2941284 0.000000e+00 2134.0
6 TraesCS4B01G301600 chr4A 86.623 1383 85 45 740 2094 2938587 2939897 0.000000e+00 1437.0
7 TraesCS4B01G301600 chr4A 92.767 871 52 9 3698 4566 2941307 2942168 0.000000e+00 1249.0
8 TraesCS4B01G301600 chr4A 81.232 714 95 27 2 685 2937886 2938590 1.450000e-149 540.0
9 TraesCS4B01G301600 chr3B 90.278 216 14 5 2098 2308 685118545 685118758 4.500000e-70 276.0
10 TraesCS4B01G301600 chr3B 89.041 219 15 7 2097 2308 662499566 662499350 3.500000e-66 263.0
11 TraesCS4B01G301600 chr6B 86.239 218 20 9 2098 2308 46460022 46460236 1.280000e-55 228.0
12 TraesCS4B01G301600 chr2B 86.709 158 10 9 2098 2249 626653502 626653654 1.020000e-36 165.0
13 TraesCS4B01G301600 chr2B 86.992 123 4 9 2099 2216 613174247 613174132 1.330000e-25 128.0
14 TraesCS4B01G301600 chr7A 78.027 223 30 15 2093 2308 123276345 123276555 6.200000e-24 122.0
15 TraesCS4B01G301600 chr7A 81.746 126 14 5 2096 2216 735815698 735815819 3.760000e-16 97.1
16 TraesCS4B01G301600 chr7A 77.165 127 22 6 456 578 34709080 34708957 2.950000e-07 67.6
17 TraesCS4B01G301600 chr3D 81.295 139 16 6 2089 2222 554726128 554725995 2.250000e-18 104.0
18 TraesCS4B01G301600 chr5D 81.148 122 14 5 2100 2216 408218155 408218272 6.290000e-14 89.8
19 TraesCS4B01G301600 chr2D 78.448 116 18 6 517 631 13568522 13568413 8.200000e-08 69.4
20 TraesCS4B01G301600 chr1D 91.667 48 3 1 516 563 366000552 366000598 1.060000e-06 65.8
21 TraesCS4B01G301600 chr7D 100.000 28 0 0 535 562 499603645 499603618 8.000000e-03 52.8
22 TraesCS4B01G301600 chr7B 100.000 28 0 0 535 562 527710257 527710230 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G301600 chr4B 588203316 588207881 4565 True 8432.0 8432 100.0000 1 4566 1 chr4B.!!$R1 4565
1 TraesCS4B01G301600 chr4D 468602795 468606818 4023 True 2767.5 3483 91.1805 309 4566 2 chr4D.!!$R2 4257
2 TraesCS4B01G301600 chr4A 2937886 2942168 4282 False 1340.0 2134 88.7280 2 4566 4 chr4A.!!$F1 4564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
370 391 0.032952 TTAGCGTCGAAGCCACAACT 59.967 50.0 19.90 2.69 38.01 3.16 F
1585 1662 0.168788 AAATGAATGGTCGCGCTGTG 59.831 50.0 5.56 0.00 0.00 3.66 F
2200 2287 0.253327 AAGAAACGAGGCCATCTCCC 59.747 55.0 5.01 0.00 39.30 4.30 F
2245 2332 0.391793 CGAAGGGAGTGAAAGGAGCC 60.392 60.0 0.00 0.00 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2230 2317 0.106967 GGATGGCTCCTTTCACTCCC 60.107 60.000 0.00 0.00 38.65 4.30 R
2856 2946 1.355381 TGCACCATCTTCTTGTCCCAT 59.645 47.619 0.00 0.00 0.00 4.00 R
3556 3649 1.454276 ACGAGTAACATGCAACGTTCG 59.546 47.619 8.04 8.83 0.00 3.95 R
4122 4247 2.483876 AGACATCAATGGGCGTATTCG 58.516 47.619 0.00 0.00 40.37 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 5.327616 TGAGGTCAAAATTACATGCATGG 57.672 39.130 29.41 12.50 0.00 3.66
57 58 4.114794 GAGGTCAAAATTACATGCATGGC 58.885 43.478 29.41 3.51 0.00 4.40
63 64 6.979817 GTCAAAATTACATGCATGGCTATTCA 59.020 34.615 29.41 10.70 0.00 2.57
66 67 9.135843 CAAAATTACATGCATGGCTATTCATAG 57.864 33.333 29.41 11.98 0.00 2.23
86 87 4.178956 AGCAAGGGGTTAACTCTTTGAA 57.821 40.909 28.86 0.00 0.00 2.69
87 88 3.889538 AGCAAGGGGTTAACTCTTTGAAC 59.110 43.478 28.86 14.98 0.00 3.18
121 124 9.355215 GTGGATATCGTATACAATTCTACTTGG 57.645 37.037 3.32 0.00 0.00 3.61
163 166 9.508642 TTTTGTCAATTTTTAGGACCAAAAGTT 57.491 25.926 0.00 0.00 30.24 2.66
173 176 5.376756 AGGACCAAAAGTTAACACACCTA 57.623 39.130 8.61 0.00 0.00 3.08
176 179 6.938596 AGGACCAAAAGTTAACACACCTATAC 59.061 38.462 8.61 0.00 0.00 1.47
178 181 7.118825 GGACCAAAAGTTAACACACCTATACTC 59.881 40.741 8.61 0.00 0.00 2.59
257 278 2.817258 CAAAATCTTAGCCACGGGTTCA 59.183 45.455 0.00 0.00 0.00 3.18
260 281 0.759959 TCTTAGCCACGGGTTCACAA 59.240 50.000 0.00 0.00 0.00 3.33
262 283 1.265905 CTTAGCCACGGGTTCACAAAC 59.734 52.381 0.00 0.00 34.46 2.93
263 284 0.470766 TAGCCACGGGTTCACAAACT 59.529 50.000 0.00 0.00 35.61 2.66
266 287 1.604604 CCACGGGTTCACAAACTGAT 58.395 50.000 0.00 0.00 35.61 2.90
273 294 2.955660 GGTTCACAAACTGATCCACCAA 59.044 45.455 0.00 0.00 38.30 3.67
281 302 1.004320 TGATCCACCAAACCCGTCG 60.004 57.895 0.00 0.00 0.00 5.12
284 305 2.180159 ATCCACCAAACCCGTCGGAG 62.180 60.000 14.39 5.47 0.00 4.63
296 317 3.458163 TCGGAGGACATCGGGCAC 61.458 66.667 0.00 0.00 0.00 5.01
315 336 0.102120 CGAGAGGCGCAAGAAGATCT 59.898 55.000 10.83 0.00 43.02 2.75
356 377 0.797249 CCTCCGACACGTCTTTAGCG 60.797 60.000 0.00 0.00 0.00 4.26
359 380 1.393597 CCGACACGTCTTTAGCGTCG 61.394 60.000 13.49 13.49 46.71 5.12
365 386 0.731514 CGTCTTTAGCGTCGAAGCCA 60.732 55.000 19.90 3.02 38.01 4.75
370 391 0.032952 TTAGCGTCGAAGCCACAACT 59.967 50.000 19.90 2.69 38.01 3.16
378 399 1.872952 CGAAGCCACAACTGTCAATCA 59.127 47.619 0.00 0.00 0.00 2.57
381 402 0.238289 GCCACAACTGTCAATCACCG 59.762 55.000 0.00 0.00 0.00 4.94
384 405 2.032030 CCACAACTGTCAATCACCGAAC 60.032 50.000 0.00 0.00 0.00 3.95
400 421 3.192103 AACGTCCAGGGCTTCCACC 62.192 63.158 0.00 0.00 0.00 4.61
424 446 0.392461 TAGCGCCACCAGACAAATCC 60.392 55.000 2.29 0.00 0.00 3.01
425 447 1.971167 GCGCCACCAGACAAATCCA 60.971 57.895 0.00 0.00 0.00 3.41
426 448 1.875963 CGCCACCAGACAAATCCAC 59.124 57.895 0.00 0.00 0.00 4.02
452 474 4.251268 AGGGCGTCTAGTGACATTTTAAC 58.749 43.478 0.00 0.00 43.06 2.01
453 475 3.998341 GGGCGTCTAGTGACATTTTAACA 59.002 43.478 0.00 0.00 43.06 2.41
607 651 6.515043 AATGTTCGCAGAATTTCAAACAAG 57.485 33.333 0.00 0.00 45.90 3.16
612 656 5.767269 TCGCAGAATTTCAAACAAGCATTA 58.233 33.333 0.00 0.00 0.00 1.90
650 694 8.918961 AGAAATGTTCAACGTGTATTTGAAAA 57.081 26.923 1.37 0.00 42.98 2.29
735 779 8.915654 GTTCAACATGTATCAAAGATTTGTTCC 58.084 33.333 0.00 0.00 39.18 3.62
836 892 9.678247 GTAAAACCAATAAAAACACAGAAAACG 57.322 29.630 0.00 0.00 0.00 3.60
887 943 3.939592 GCTGAAGCTTCTAAAACCGGTAT 59.060 43.478 26.09 1.99 38.21 2.73
898 956 3.622166 AAACCGGTATACCAAGTCCAG 57.378 47.619 21.76 3.39 35.14 3.86
901 959 0.249322 CGGTATACCAAGTCCAGCCG 60.249 60.000 21.76 0.00 35.14 5.52
976 1037 0.818040 AGGCCATTTCCCGCGATAAC 60.818 55.000 8.23 0.00 0.00 1.89
1227 1291 4.082523 TCCTCGGCCAAGAAGCGG 62.083 66.667 2.24 0.00 34.61 5.52
1290 1362 1.402968 GTCGACGAGCAGGTATACCAA 59.597 52.381 23.87 0.00 38.89 3.67
1339 1412 1.956678 GCTTCTCGCGCCCCTATTC 60.957 63.158 0.00 0.00 0.00 1.75
1342 1415 0.468226 TTCTCGCGCCCCTATTCATT 59.532 50.000 0.00 0.00 0.00 2.57
1348 1421 1.536709 GCGCCCCTATTCATTTTGCTG 60.537 52.381 0.00 0.00 0.00 4.41
1441 1518 2.680352 GTGGAGGCCCTCACGAGA 60.680 66.667 13.90 0.00 31.08 4.04
1488 1565 1.074752 CTTTTCGAGCTGAGGTCTGC 58.925 55.000 10.18 0.81 40.53 4.26
1494 1571 1.296068 AGCTGAGGTCTGCTCTTGC 59.704 57.895 5.60 0.00 46.09 4.01
1503 1580 2.124983 TGCTCTTGCTCCGATGCC 60.125 61.111 0.00 0.00 40.48 4.40
1523 1600 3.733344 ATAAGCGCGACGGCACCAT 62.733 57.895 12.10 0.00 39.92 3.55
1524 1601 3.943479 TAAGCGCGACGGCACCATT 62.943 57.895 12.10 0.00 39.92 3.16
1525 1602 2.560051 TAAGCGCGACGGCACCATTA 62.560 55.000 12.10 0.00 39.92 1.90
1527 1604 2.819552 GCGCGACGGCACCATTAAT 61.820 57.895 12.10 0.00 39.92 1.40
1528 1605 1.275657 CGCGACGGCACCATTAATC 59.724 57.895 0.00 0.00 39.92 1.75
1554 1631 4.569943 TCATTTCTGCTTGGACTACTGAC 58.430 43.478 0.00 0.00 0.00 3.51
1585 1662 0.168788 AAATGAATGGTCGCGCTGTG 59.831 50.000 5.56 0.00 0.00 3.66
1589 1666 4.687215 ATGGTCGCGCTGTGCTGT 62.687 61.111 11.82 0.00 43.27 4.40
1625 1702 1.678101 GGCCTGTTGATGTATGGCTTC 59.322 52.381 0.00 0.00 42.84 3.86
1688 1765 4.999950 ACCTTGACTGATTTCACTGTCATC 59.000 41.667 0.00 0.00 43.94 2.92
1703 1780 3.331150 TGTCATCGTGGTCAATGGTTAC 58.669 45.455 0.00 0.00 0.00 2.50
1727 1804 1.466167 CCGTCCATCAACTTGAAGCAG 59.534 52.381 0.00 0.00 0.00 4.24
1732 1809 5.428253 GTCCATCAACTTGAAGCAGGTATA 58.572 41.667 0.00 0.00 0.00 1.47
1735 1812 4.551702 TCAACTTGAAGCAGGTATAGCA 57.448 40.909 4.48 0.00 0.00 3.49
1751 1830 7.281774 CAGGTATAGCATTCTGCCTAATATTGG 59.718 40.741 4.48 0.00 46.52 3.16
1775 1854 5.355350 GCCTCTTGACTGTATAATTGCTTGT 59.645 40.000 0.00 0.00 0.00 3.16
1776 1855 6.127897 GCCTCTTGACTGTATAATTGCTTGTT 60.128 38.462 0.00 0.00 0.00 2.83
1819 1898 4.612259 GCTTAGAGAACTGTTGCACATGTG 60.612 45.833 21.83 21.83 0.00 3.21
1821 1900 3.282021 AGAGAACTGTTGCACATGTGTT 58.718 40.909 26.01 11.90 0.00 3.32
1823 1902 4.273480 AGAGAACTGTTGCACATGTGTTAC 59.727 41.667 26.01 22.16 0.00 2.50
1831 1911 4.529109 TGCACATGTGTTACTGTAGCTA 57.471 40.909 26.01 0.00 0.00 3.32
1844 1924 8.585881 TGTTACTGTAGCTATCTTGAACTTTCT 58.414 33.333 0.00 0.00 0.00 2.52
1851 1931 9.640963 GTAGCTATCTTGAACTTTCTGTCTTTA 57.359 33.333 0.00 0.00 0.00 1.85
1864 1944 8.695456 ACTTTCTGTCTTTATGGACAAACAAAT 58.305 29.630 0.00 0.00 44.24 2.32
1868 1948 9.959749 TCTGTCTTTATGGACAAACAAATAAAC 57.040 29.630 0.00 0.00 44.24 2.01
1870 1950 9.522804 TGTCTTTATGGACAAACAAATAAACAC 57.477 29.630 0.00 0.00 42.35 3.32
1874 1954 6.723298 ATGGACAAACAAATAAACACTGGA 57.277 33.333 0.00 0.00 0.00 3.86
1875 1955 6.142818 TGGACAAACAAATAAACACTGGAG 57.857 37.500 0.00 0.00 0.00 3.86
1876 1956 5.888724 TGGACAAACAAATAAACACTGGAGA 59.111 36.000 0.00 0.00 0.00 3.71
1877 1957 6.039270 TGGACAAACAAATAAACACTGGAGAG 59.961 38.462 0.00 0.00 0.00 3.20
1880 1960 7.875971 ACAAACAAATAAACACTGGAGAGATC 58.124 34.615 0.00 0.00 0.00 2.75
1881 1961 7.502226 ACAAACAAATAAACACTGGAGAGATCA 59.498 33.333 0.00 0.00 0.00 2.92
1882 1962 7.678947 AACAAATAAACACTGGAGAGATCAG 57.321 36.000 0.00 0.00 38.16 2.90
1883 1963 6.773638 ACAAATAAACACTGGAGAGATCAGT 58.226 36.000 0.00 0.00 45.29 3.41
1884 1964 7.227156 ACAAATAAACACTGGAGAGATCAGTT 58.773 34.615 0.00 0.00 42.87 3.16
1885 1965 7.721399 ACAAATAAACACTGGAGAGATCAGTTT 59.279 33.333 0.00 0.00 42.87 2.66
1886 1966 9.219603 CAAATAAACACTGGAGAGATCAGTTTA 57.780 33.333 0.00 0.00 42.87 2.01
1887 1967 9.442047 AAATAAACACTGGAGAGATCAGTTTAG 57.558 33.333 0.00 0.00 42.87 1.85
1888 1968 6.426646 AAACACTGGAGAGATCAGTTTAGT 57.573 37.500 0.00 0.00 42.87 2.24
1889 1969 5.398603 ACACTGGAGAGATCAGTTTAGTG 57.601 43.478 14.12 14.12 42.87 2.74
1890 1970 4.835615 ACACTGGAGAGATCAGTTTAGTGT 59.164 41.667 15.08 15.08 42.87 3.55
1891 1971 6.010850 ACACTGGAGAGATCAGTTTAGTGTA 58.989 40.000 17.73 0.00 43.81 2.90
1892 1972 6.071840 ACACTGGAGAGATCAGTTTAGTGTAC 60.072 42.308 17.73 0.00 43.81 2.90
1893 1973 6.010850 ACTGGAGAGATCAGTTTAGTGTACA 58.989 40.000 0.00 0.00 42.17 2.90
1894 1974 6.493802 ACTGGAGAGATCAGTTTAGTGTACAA 59.506 38.462 0.00 0.00 42.17 2.41
1895 1975 6.925211 TGGAGAGATCAGTTTAGTGTACAAG 58.075 40.000 0.00 0.00 0.00 3.16
1896 1976 6.719829 TGGAGAGATCAGTTTAGTGTACAAGA 59.280 38.462 0.00 0.00 0.00 3.02
1897 1977 7.397476 TGGAGAGATCAGTTTAGTGTACAAGAT 59.603 37.037 0.00 0.00 0.00 2.40
1898 1978 8.254508 GGAGAGATCAGTTTAGTGTACAAGATT 58.745 37.037 0.00 0.00 0.00 2.40
1932 2012 2.418976 GGTTTCTATCAACCAACGCTCC 59.581 50.000 0.00 0.00 45.12 4.70
1933 2013 2.004583 TTCTATCAACCAACGCTCCG 57.995 50.000 0.00 0.00 0.00 4.63
2014 2094 0.968405 CAACCACATGAAACAGGGGG 59.032 55.000 0.00 3.12 45.07 5.40
2089 2176 9.826574 TGGTCTTATAGTTGTATTGTATGGAAC 57.173 33.333 0.00 0.00 0.00 3.62
2133 2220 3.897141 AGAGTTTCCTCTCCGATTTCC 57.103 47.619 0.00 0.00 45.08 3.13
2134 2221 3.173965 AGAGTTTCCTCTCCGATTTCCA 58.826 45.455 0.00 0.00 45.08 3.53
2135 2222 3.777522 AGAGTTTCCTCTCCGATTTCCAT 59.222 43.478 0.00 0.00 45.08 3.41
2136 2223 4.226168 AGAGTTTCCTCTCCGATTTCCATT 59.774 41.667 0.00 0.00 45.08 3.16
2137 2224 5.425539 AGAGTTTCCTCTCCGATTTCCATTA 59.574 40.000 0.00 0.00 45.08 1.90
2138 2225 6.062258 AGTTTCCTCTCCGATTTCCATTAA 57.938 37.500 0.00 0.00 0.00 1.40
2139 2226 6.663734 AGTTTCCTCTCCGATTTCCATTAAT 58.336 36.000 0.00 0.00 0.00 1.40
2140 2227 7.802117 AGTTTCCTCTCCGATTTCCATTAATA 58.198 34.615 0.00 0.00 0.00 0.98
2141 2228 7.934120 AGTTTCCTCTCCGATTTCCATTAATAG 59.066 37.037 0.00 0.00 0.00 1.73
2142 2229 7.612065 TTCCTCTCCGATTTCCATTAATAGA 57.388 36.000 0.00 0.00 0.00 1.98
2143 2230 7.612065 TCCTCTCCGATTTCCATTAATAGAA 57.388 36.000 0.00 0.00 0.00 2.10
2144 2231 8.029782 TCCTCTCCGATTTCCATTAATAGAAA 57.970 34.615 10.79 10.79 36.48 2.52
2145 2232 8.660435 TCCTCTCCGATTTCCATTAATAGAAAT 58.340 33.333 18.11 18.11 43.58 2.17
2156 2243 9.878667 TTCCATTAATAGAAATCACGTCTTACA 57.121 29.630 0.00 0.00 0.00 2.41
2157 2244 9.878667 TCCATTAATAGAAATCACGTCTTACAA 57.121 29.630 0.00 0.00 0.00 2.41
2165 2252 8.882415 AGAAATCACGTCTTACAAACTAGAAA 57.118 30.769 0.00 0.00 0.00 2.52
2166 2253 8.762426 AGAAATCACGTCTTACAAACTAGAAAC 58.238 33.333 0.00 0.00 0.00 2.78
2167 2254 8.428186 AAATCACGTCTTACAAACTAGAAACA 57.572 30.769 0.00 0.00 0.00 2.83
2168 2255 7.639162 ATCACGTCTTACAAACTAGAAACAG 57.361 36.000 0.00 0.00 0.00 3.16
2169 2256 6.798482 TCACGTCTTACAAACTAGAAACAGA 58.202 36.000 0.00 0.00 0.00 3.41
2170 2257 7.259882 TCACGTCTTACAAACTAGAAACAGAA 58.740 34.615 0.00 0.00 0.00 3.02
2171 2258 7.760794 TCACGTCTTACAAACTAGAAACAGAAA 59.239 33.333 0.00 0.00 0.00 2.52
2172 2259 8.056571 CACGTCTTACAAACTAGAAACAGAAAG 58.943 37.037 0.00 0.00 0.00 2.62
2173 2260 7.977853 ACGTCTTACAAACTAGAAACAGAAAGA 59.022 33.333 0.00 0.00 0.00 2.52
2174 2261 8.814235 CGTCTTACAAACTAGAAACAGAAAGAA 58.186 33.333 0.00 0.00 0.00 2.52
2184 2271 9.892130 ACTAGAAACAGAAAGAAAAAGAGAAGA 57.108 29.630 0.00 0.00 0.00 2.87
2187 2274 9.847706 AGAAACAGAAAGAAAAAGAGAAGAAAC 57.152 29.630 0.00 0.00 0.00 2.78
2188 2275 8.675040 AAACAGAAAGAAAAAGAGAAGAAACG 57.325 30.769 0.00 0.00 0.00 3.60
2189 2276 7.611213 ACAGAAAGAAAAAGAGAAGAAACGA 57.389 32.000 0.00 0.00 0.00 3.85
2190 2277 7.689299 ACAGAAAGAAAAAGAGAAGAAACGAG 58.311 34.615 0.00 0.00 0.00 4.18
2191 2278 7.128976 CAGAAAGAAAAAGAGAAGAAACGAGG 58.871 38.462 0.00 0.00 0.00 4.63
2192 2279 5.425577 AAGAAAAAGAGAAGAAACGAGGC 57.574 39.130 0.00 0.00 0.00 4.70
2193 2280 3.815962 AGAAAAAGAGAAGAAACGAGGCC 59.184 43.478 0.00 0.00 0.00 5.19
2194 2281 2.930826 AAAGAGAAGAAACGAGGCCA 57.069 45.000 5.01 0.00 0.00 5.36
2195 2282 3.425162 AAAGAGAAGAAACGAGGCCAT 57.575 42.857 5.01 0.00 0.00 4.40
2196 2283 2.682155 AGAGAAGAAACGAGGCCATC 57.318 50.000 5.01 0.00 0.00 3.51
2197 2284 2.183679 AGAGAAGAAACGAGGCCATCT 58.816 47.619 5.01 0.00 0.00 2.90
2198 2285 2.167487 AGAGAAGAAACGAGGCCATCTC 59.833 50.000 5.01 4.76 39.10 2.75
2199 2286 1.208293 AGAAGAAACGAGGCCATCTCC 59.792 52.381 5.01 0.00 39.30 3.71
2200 2287 0.253327 AAGAAACGAGGCCATCTCCC 59.747 55.000 5.01 0.00 39.30 4.30
2201 2288 1.153147 GAAACGAGGCCATCTCCCC 60.153 63.158 5.01 0.00 39.30 4.81
2202 2289 2.610532 GAAACGAGGCCATCTCCCCC 62.611 65.000 5.01 0.00 39.30 5.40
2203 2290 3.642741 AACGAGGCCATCTCCCCCT 62.643 63.158 5.01 0.00 39.30 4.79
2204 2291 3.554342 CGAGGCCATCTCCCCCTG 61.554 72.222 5.01 0.00 39.30 4.45
2205 2292 3.174265 GAGGCCATCTCCCCCTGG 61.174 72.222 5.01 0.00 36.52 4.45
2206 2293 4.044390 AGGCCATCTCCCCCTGGT 62.044 66.667 5.01 0.00 34.86 4.00
2207 2294 3.023735 GGCCATCTCCCCCTGGTT 61.024 66.667 0.00 0.00 34.86 3.67
2208 2295 2.597903 GCCATCTCCCCCTGGTTC 59.402 66.667 0.00 0.00 34.86 3.62
2209 2296 2.003548 GCCATCTCCCCCTGGTTCT 61.004 63.158 0.00 0.00 34.86 3.01
2210 2297 1.575447 GCCATCTCCCCCTGGTTCTT 61.575 60.000 0.00 0.00 34.86 2.52
2211 2298 1.002857 CCATCTCCCCCTGGTTCTTT 58.997 55.000 0.00 0.00 0.00 2.52
2212 2299 1.341383 CCATCTCCCCCTGGTTCTTTG 60.341 57.143 0.00 0.00 0.00 2.77
2213 2300 1.355720 CATCTCCCCCTGGTTCTTTGT 59.644 52.381 0.00 0.00 0.00 2.83
2214 2301 1.064825 TCTCCCCCTGGTTCTTTGTC 58.935 55.000 0.00 0.00 0.00 3.18
2215 2302 0.771127 CTCCCCCTGGTTCTTTGTCA 59.229 55.000 0.00 0.00 0.00 3.58
2216 2303 1.144913 CTCCCCCTGGTTCTTTGTCAA 59.855 52.381 0.00 0.00 0.00 3.18
2217 2304 1.133606 TCCCCCTGGTTCTTTGTCAAC 60.134 52.381 0.00 0.00 0.00 3.18
2218 2305 1.133482 CCCCCTGGTTCTTTGTCAACT 60.133 52.381 0.00 0.00 0.00 3.16
2219 2306 2.230660 CCCCTGGTTCTTTGTCAACTC 58.769 52.381 0.00 0.00 0.00 3.01
2220 2307 2.158608 CCCCTGGTTCTTTGTCAACTCT 60.159 50.000 0.00 0.00 0.00 3.24
2221 2308 2.880890 CCCTGGTTCTTTGTCAACTCTG 59.119 50.000 0.00 0.00 0.00 3.35
2222 2309 2.291741 CCTGGTTCTTTGTCAACTCTGC 59.708 50.000 0.00 0.00 0.00 4.26
2223 2310 3.209410 CTGGTTCTTTGTCAACTCTGCT 58.791 45.455 0.00 0.00 0.00 4.24
2224 2311 3.620488 TGGTTCTTTGTCAACTCTGCTT 58.380 40.909 0.00 0.00 0.00 3.91
2225 2312 3.627577 TGGTTCTTTGTCAACTCTGCTTC 59.372 43.478 0.00 0.00 0.00 3.86
2226 2313 3.003793 GGTTCTTTGTCAACTCTGCTTCC 59.996 47.826 0.00 0.00 0.00 3.46
2227 2314 2.483876 TCTTTGTCAACTCTGCTTCCG 58.516 47.619 0.00 0.00 0.00 4.30
2228 2315 2.102420 TCTTTGTCAACTCTGCTTCCGA 59.898 45.455 0.00 0.00 0.00 4.55
2229 2316 2.613026 TTGTCAACTCTGCTTCCGAA 57.387 45.000 0.00 0.00 0.00 4.30
2230 2317 2.154854 TGTCAACTCTGCTTCCGAAG 57.845 50.000 3.56 3.56 0.00 3.79
2244 2331 3.145228 CGAAGGGAGTGAAAGGAGC 57.855 57.895 0.00 0.00 0.00 4.70
2245 2332 0.391793 CGAAGGGAGTGAAAGGAGCC 60.392 60.000 0.00 0.00 0.00 4.70
2246 2333 0.693049 GAAGGGAGTGAAAGGAGCCA 59.307 55.000 0.00 0.00 0.00 4.75
2247 2334 1.283321 GAAGGGAGTGAAAGGAGCCAT 59.717 52.381 0.00 0.00 0.00 4.40
2248 2335 0.915364 AGGGAGTGAAAGGAGCCATC 59.085 55.000 0.00 0.00 0.00 3.51
2258 2345 3.157252 GAGCCATCCCTCGCTCCA 61.157 66.667 0.00 0.00 44.70 3.86
2259 2346 2.447379 AGCCATCCCTCGCTCCAT 60.447 61.111 0.00 0.00 0.00 3.41
2260 2347 2.031768 GCCATCCCTCGCTCCATC 59.968 66.667 0.00 0.00 0.00 3.51
2261 2348 2.746359 CCATCCCTCGCTCCATCC 59.254 66.667 0.00 0.00 0.00 3.51
2262 2349 2.142761 CCATCCCTCGCTCCATCCA 61.143 63.158 0.00 0.00 0.00 3.41
2263 2350 1.486997 CCATCCCTCGCTCCATCCAT 61.487 60.000 0.00 0.00 0.00 3.41
2264 2351 1.269958 CATCCCTCGCTCCATCCATA 58.730 55.000 0.00 0.00 0.00 2.74
2265 2352 1.625315 CATCCCTCGCTCCATCCATAA 59.375 52.381 0.00 0.00 0.00 1.90
2266 2353 2.030027 TCCCTCGCTCCATCCATAAT 57.970 50.000 0.00 0.00 0.00 1.28
2267 2354 1.902508 TCCCTCGCTCCATCCATAATC 59.097 52.381 0.00 0.00 0.00 1.75
2268 2355 1.065854 CCCTCGCTCCATCCATAATCC 60.066 57.143 0.00 0.00 0.00 3.01
2269 2356 1.905215 CCTCGCTCCATCCATAATCCT 59.095 52.381 0.00 0.00 0.00 3.24
2270 2357 2.093764 CCTCGCTCCATCCATAATCCTC 60.094 54.545 0.00 0.00 0.00 3.71
2271 2358 1.902508 TCGCTCCATCCATAATCCTCC 59.097 52.381 0.00 0.00 0.00 4.30
2272 2359 1.404717 CGCTCCATCCATAATCCTCCG 60.405 57.143 0.00 0.00 0.00 4.63
2273 2360 1.902508 GCTCCATCCATAATCCTCCGA 59.097 52.381 0.00 0.00 0.00 4.55
2274 2361 2.303022 GCTCCATCCATAATCCTCCGAA 59.697 50.000 0.00 0.00 0.00 4.30
2275 2362 3.244561 GCTCCATCCATAATCCTCCGAAA 60.245 47.826 0.00 0.00 0.00 3.46
2276 2363 4.319177 CTCCATCCATAATCCTCCGAAAC 58.681 47.826 0.00 0.00 0.00 2.78
2277 2364 3.714280 TCCATCCATAATCCTCCGAAACA 59.286 43.478 0.00 0.00 0.00 2.83
2278 2365 4.067896 CCATCCATAATCCTCCGAAACAG 58.932 47.826 0.00 0.00 0.00 3.16
2279 2366 3.838244 TCCATAATCCTCCGAAACAGG 57.162 47.619 0.00 0.00 0.00 4.00
2280 2367 3.112263 TCCATAATCCTCCGAAACAGGT 58.888 45.455 0.00 0.00 32.20 4.00
2281 2368 4.291792 TCCATAATCCTCCGAAACAGGTA 58.708 43.478 0.00 0.00 32.20 3.08
2282 2369 4.344102 TCCATAATCCTCCGAAACAGGTAG 59.656 45.833 0.00 0.00 32.20 3.18
2283 2370 4.344102 CCATAATCCTCCGAAACAGGTAGA 59.656 45.833 0.00 0.00 32.20 2.59
2284 2371 3.889520 AATCCTCCGAAACAGGTAGAC 57.110 47.619 0.00 0.00 32.20 2.59
2285 2372 2.599408 TCCTCCGAAACAGGTAGACT 57.401 50.000 0.00 0.00 32.20 3.24
2286 2373 2.885616 TCCTCCGAAACAGGTAGACTT 58.114 47.619 0.00 0.00 32.20 3.01
2287 2374 3.236896 TCCTCCGAAACAGGTAGACTTT 58.763 45.455 0.00 0.00 32.20 2.66
2288 2375 3.644738 TCCTCCGAAACAGGTAGACTTTT 59.355 43.478 0.00 0.00 32.20 2.27
2289 2376 4.834496 TCCTCCGAAACAGGTAGACTTTTA 59.166 41.667 0.00 0.00 32.20 1.52
2290 2377 4.928020 CCTCCGAAACAGGTAGACTTTTAC 59.072 45.833 0.00 0.00 0.00 2.01
2291 2378 4.886579 TCCGAAACAGGTAGACTTTTACC 58.113 43.478 0.00 0.00 42.84 2.85
2292 2379 3.676646 CCGAAACAGGTAGACTTTTACCG 59.323 47.826 0.00 0.00 46.27 4.02
2293 2380 4.549458 CGAAACAGGTAGACTTTTACCGA 58.451 43.478 0.00 0.00 46.27 4.69
2294 2381 4.620184 CGAAACAGGTAGACTTTTACCGAG 59.380 45.833 0.00 0.00 46.27 4.63
2295 2382 4.532314 AACAGGTAGACTTTTACCGAGG 57.468 45.455 0.00 0.00 46.27 4.63
2296 2383 2.830321 ACAGGTAGACTTTTACCGAGGG 59.170 50.000 0.00 0.00 46.27 4.30
2297 2384 2.167900 CAGGTAGACTTTTACCGAGGGG 59.832 54.545 0.00 0.00 46.27 4.79
2298 2385 1.483827 GGTAGACTTTTACCGAGGGGG 59.516 57.143 0.00 0.00 43.62 5.40
2299 2386 2.460669 GTAGACTTTTACCGAGGGGGA 58.539 52.381 0.00 0.00 39.97 4.81
2300 2387 1.569653 AGACTTTTACCGAGGGGGAG 58.430 55.000 0.00 0.00 39.97 4.30
2301 2388 1.078324 AGACTTTTACCGAGGGGGAGA 59.922 52.381 0.00 0.00 39.97 3.71
2302 2389 2.117051 GACTTTTACCGAGGGGGAGAT 58.883 52.381 0.00 0.00 39.97 2.75
2303 2390 2.102757 GACTTTTACCGAGGGGGAGATC 59.897 54.545 0.00 0.00 39.97 2.75
2304 2391 2.292984 ACTTTTACCGAGGGGGAGATCT 60.293 50.000 0.00 0.00 39.97 2.75
2305 2392 3.052338 ACTTTTACCGAGGGGGAGATCTA 60.052 47.826 0.00 0.00 39.97 1.98
2306 2393 3.693526 TTTACCGAGGGGGAGATCTAA 57.306 47.619 0.00 0.00 39.97 2.10
2307 2394 2.973983 TACCGAGGGGGAGATCTAAG 57.026 55.000 0.00 0.00 39.97 2.18
2308 2395 0.935194 ACCGAGGGGGAGATCTAAGT 59.065 55.000 0.00 0.00 39.97 2.24
2309 2396 2.141911 ACCGAGGGGGAGATCTAAGTA 58.858 52.381 0.00 0.00 39.97 2.24
2310 2397 2.517127 ACCGAGGGGGAGATCTAAGTAA 59.483 50.000 0.00 0.00 39.97 2.24
2311 2398 3.142407 ACCGAGGGGGAGATCTAAGTAAT 59.858 47.826 0.00 0.00 39.97 1.89
2312 2399 3.511934 CCGAGGGGGAGATCTAAGTAATG 59.488 52.174 0.00 0.00 38.47 1.90
2363 2450 1.039856 GGTTTGCACACCCAGATTGT 58.960 50.000 11.17 0.00 0.00 2.71
2379 2466 6.351202 CCCAGATTGTCAAATTTGATGCCTTA 60.351 38.462 23.05 6.71 39.73 2.69
2441 2528 7.589395 TGTAACATCAACGCAATTTGAAGTAT 58.411 30.769 0.00 0.00 36.62 2.12
2444 2531 6.317088 ACATCAACGCAATTTGAAGTATCAG 58.683 36.000 0.00 0.00 38.95 2.90
2446 2533 5.927030 TCAACGCAATTTGAAGTATCAGTC 58.073 37.500 0.00 0.00 36.78 3.51
2507 2594 6.418057 ACAATAGCTGAAATGTTTTGGGAA 57.582 33.333 0.00 0.00 0.00 3.97
2512 2599 4.405358 AGCTGAAATGTTTTGGGAACAGAA 59.595 37.500 0.00 0.00 44.54 3.02
2554 2641 1.142870 CTCAGGAACAAGGTCCCAACA 59.857 52.381 0.00 0.00 38.59 3.33
2571 2658 5.649395 TCCCAACAATCACAAAATTTTGCAA 59.351 32.000 26.94 17.11 41.79 4.08
2577 2664 6.071728 ACAATCACAAAATTTTGCAACCCAAA 60.072 30.769 26.94 7.48 41.79 3.28
2660 2747 6.677920 GCGTGTGCCTTCTTATTCACAATATT 60.678 38.462 0.00 0.00 40.57 1.28
2673 2760 3.947196 TCACAATATTGATGGACCTGCAC 59.053 43.478 22.16 0.00 0.00 4.57
2747 2834 4.877378 AATCCACATTGTTGCATCAGTT 57.123 36.364 0.00 0.00 0.00 3.16
2779 2866 5.417580 TCAATGCACCTTTATGTAAGTTCCC 59.582 40.000 0.00 0.00 31.56 3.97
2786 2873 0.542805 TATGTAAGTTCCCGGCACCC 59.457 55.000 0.00 0.00 0.00 4.61
2797 2884 1.450312 CGGCACCCTTAGCTTCCTG 60.450 63.158 0.00 0.00 0.00 3.86
2810 2897 2.790387 GCTTCCTGCTTTTCTAATGCG 58.210 47.619 0.00 0.00 38.95 4.73
2839 2929 5.437060 TGAAGGTATCCTAAACTGGCAATC 58.563 41.667 0.00 0.00 31.13 2.67
2856 2946 5.479027 TGGCAATCACTGACTTACTGTAGTA 59.521 40.000 0.00 0.00 32.26 1.82
2964 3054 5.215252 TCTACCCATTGATACTTGCTAGC 57.785 43.478 8.10 8.10 0.00 3.42
3095 3185 6.819397 AAAAGAGGAAGGTAAGTAATGTGC 57.181 37.500 0.00 0.00 0.00 4.57
3120 3210 2.276732 TTTCTTGAGAAGCACAGGGG 57.723 50.000 0.00 0.00 35.21 4.79
3192 3282 6.878389 TGTACACTAAATCACATCTGCAATGA 59.122 34.615 13.53 4.44 0.00 2.57
3405 3495 4.363991 AGAATTGGCCTGATATCCTGAC 57.636 45.455 3.32 0.00 0.00 3.51
3407 3497 3.784511 ATTGGCCTGATATCCTGACTG 57.215 47.619 3.32 0.00 0.00 3.51
3418 3508 7.611855 CCTGATATCCTGACTGTTTACCTTTTT 59.388 37.037 0.00 0.00 0.00 1.94
3556 3649 4.217118 CCAGCACTTATTTATGAGATGGCC 59.783 45.833 0.00 0.00 0.00 5.36
3560 3653 5.560953 GCACTTATTTATGAGATGGCCGAAC 60.561 44.000 0.00 0.00 0.00 3.95
3575 3668 1.201769 CCGAACGTTGCATGTTACTCG 60.202 52.381 5.00 0.00 0.00 4.18
3657 3751 8.129211 CGAAATTTCAATAGGGAACTGTATTCC 58.871 37.037 17.99 0.00 43.88 3.01
3662 3756 5.659525 TCAATAGGGAACTGTATTCCGAAGA 59.340 40.000 0.00 0.00 43.88 2.87
3672 3766 4.647611 TGTATTCCGAAGACCATGTTTGT 58.352 39.130 3.51 0.00 0.00 2.83
3696 3790 7.123098 TGTTATCTTGATCAAAGCATGGATTGT 59.877 33.333 9.88 0.00 35.69 2.71
3720 3842 5.547465 TCCAAAGTATTCGTCTGACACAAT 58.453 37.500 8.73 7.74 0.00 2.71
3721 3843 5.995282 TCCAAAGTATTCGTCTGACACAATT 59.005 36.000 8.73 0.00 0.00 2.32
3915 4039 7.386025 TCATCTCAACTTGATACAACAAGACAG 59.614 37.037 14.00 7.30 46.85 3.51
3916 4040 6.582636 TCTCAACTTGATACAACAAGACAGT 58.417 36.000 14.00 0.00 46.85 3.55
3925 4049 3.141398 ACAACAAGACAGTGTGGCATAG 58.859 45.455 0.00 0.00 0.00 2.23
3950 4074 9.565090 AGTGCAGTATATACATGTCAATGATTT 57.435 29.630 15.18 0.00 37.24 2.17
3951 4075 9.603298 GTGCAGTATATACATGTCAATGATTTG 57.397 33.333 15.18 1.32 37.24 2.32
3980 4105 7.389330 ACATAAAACATGACGGTCTACATGAAA 59.611 33.333 13.35 0.00 44.28 2.69
4065 4190 2.292845 GAGCCATAAAAGCATCTCAGCC 59.707 50.000 0.00 0.00 34.23 4.85
4074 4199 0.540923 GCATCTCAGCCAGACCTTCT 59.459 55.000 0.00 0.00 32.26 2.85
4122 4247 3.518634 TCCCTTTTTGCTTTGTCACAC 57.481 42.857 0.00 0.00 0.00 3.82
4217 4342 3.758554 AGGATGGACTGTATGCAAACAAC 59.241 43.478 0.00 0.00 29.34 3.32
4499 4625 1.647213 CCACTAACAACATCGTCGACG 59.353 52.381 31.30 31.30 41.45 5.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.381825 GCCATGCATGTAATTTTGACCTCA 60.382 41.667 24.58 0.00 0.00 3.86
35 36 4.114794 GCCATGCATGTAATTTTGACCTC 58.885 43.478 24.58 0.00 0.00 3.85
37 38 4.127566 AGCCATGCATGTAATTTTGACC 57.872 40.909 24.58 1.07 0.00 4.02
57 58 6.831976 AGAGTTAACCCCTTGCTATGAATAG 58.168 40.000 0.88 0.00 0.00 1.73
63 64 5.514500 TCAAAGAGTTAACCCCTTGCTAT 57.486 39.130 10.47 0.00 0.00 2.97
66 67 3.889538 AGTTCAAAGAGTTAACCCCTTGC 59.110 43.478 10.47 4.21 0.00 4.01
103 106 7.047460 AGGTACCCAAGTAGAATTGTATACG 57.953 40.000 8.74 0.00 0.00 3.06
117 120 9.687210 GACAAAAATAGTTTTAAGGTACCCAAG 57.313 33.333 8.74 0.00 35.12 3.61
257 278 2.316108 GGGTTTGGTGGATCAGTTTGT 58.684 47.619 0.00 0.00 0.00 2.83
260 281 0.476771 ACGGGTTTGGTGGATCAGTT 59.523 50.000 0.00 0.00 0.00 3.16
262 283 1.019278 CGACGGGTTTGGTGGATCAG 61.019 60.000 0.00 0.00 0.00 2.90
263 284 1.004320 CGACGGGTTTGGTGGATCA 60.004 57.895 0.00 0.00 0.00 2.92
266 287 2.843411 TCCGACGGGTTTGGTGGA 60.843 61.111 15.25 0.00 33.83 4.02
273 294 2.707849 CGATGTCCTCCGACGGGTT 61.708 63.158 15.25 0.00 42.37 4.11
281 302 3.432051 CTCGTGCCCGATGTCCTCC 62.432 68.421 0.00 0.00 43.27 4.30
284 305 2.105128 CTCTCGTGCCCGATGTCC 59.895 66.667 0.00 0.00 43.27 4.02
296 317 0.102120 AGATCTTCTTGCGCCTCTCG 59.898 55.000 4.18 0.00 42.12 4.04
330 351 4.778415 CGTGTCGGAGGTCCAGCG 62.778 72.222 0.00 0.00 35.14 5.18
342 363 1.642843 CTTCGACGCTAAAGACGTGTC 59.357 52.381 0.00 0.00 45.24 3.67
343 364 1.682982 CTTCGACGCTAAAGACGTGT 58.317 50.000 0.00 0.00 45.24 4.49
356 377 1.295792 TTGACAGTTGTGGCTTCGAC 58.704 50.000 0.00 0.00 30.05 4.20
359 380 2.030805 GGTGATTGACAGTTGTGGCTTC 60.031 50.000 0.00 0.00 30.05 3.86
365 386 1.864711 CGTTCGGTGATTGACAGTTGT 59.135 47.619 0.00 0.00 0.00 3.32
370 391 0.389757 TGGACGTTCGGTGATTGACA 59.610 50.000 0.00 0.00 0.00 3.58
378 399 3.236003 GAAGCCCTGGACGTTCGGT 62.236 63.158 1.05 0.00 0.00 4.69
381 402 1.671379 GTGGAAGCCCTGGACGTTC 60.671 63.158 0.00 0.00 0.00 3.95
415 436 1.244019 GCCCTTGCGTGGATTTGTCT 61.244 55.000 0.00 0.00 0.00 3.41
473 495 9.001049 CATTTTTCAAAATGTGTGAACATTGTG 57.999 29.630 13.31 13.31 46.27 3.33
607 651 6.314400 ACATTTCTTTGAATGGTGCATAATGC 59.686 34.615 0.00 0.00 41.14 3.56
612 656 5.856156 TGAACATTTCTTTGAATGGTGCAT 58.144 33.333 0.00 0.00 37.08 3.96
716 760 6.721208 ACACCTGGAACAAATCTTTGATACAT 59.279 34.615 9.53 0.00 40.55 2.29
811 866 8.381387 GCGTTTTCTGTGTTTTTATTGGTTTTA 58.619 29.630 0.00 0.00 0.00 1.52
887 943 4.077184 CGCCGGCTGGACTTGGTA 62.077 66.667 26.68 0.00 37.49 3.25
1034 1095 0.179000 CAAGGATGGAGGACCGGAAG 59.821 60.000 9.46 0.00 39.42 3.46
1036 1097 2.367202 GCAAGGATGGAGGACCGGA 61.367 63.158 9.46 0.00 39.42 5.14
1072 1133 4.162690 CTTCCTCTTCCCCCGCCG 62.163 72.222 0.00 0.00 0.00 6.46
1073 1134 4.491409 GCTTCCTCTTCCCCCGCC 62.491 72.222 0.00 0.00 0.00 6.13
1074 1135 4.840005 CGCTTCCTCTTCCCCCGC 62.840 72.222 0.00 0.00 0.00 6.13
1075 1136 3.075005 TCGCTTCCTCTTCCCCCG 61.075 66.667 0.00 0.00 0.00 5.73
1284 1351 2.108970 GGTTCCGAGGAGAGTTGGTAT 58.891 52.381 0.00 0.00 0.00 2.73
1290 1362 1.000612 GGAGGGTTCCGAGGAGAGT 59.999 63.158 0.00 0.00 32.79 3.24
1334 1407 4.802039 AGCAAATCGCAGCAAAATGAATAG 59.198 37.500 0.00 0.00 46.13 1.73
1339 1412 2.330286 TCAGCAAATCGCAGCAAAATG 58.670 42.857 0.00 0.00 46.13 2.32
1342 1415 2.728690 AATCAGCAAATCGCAGCAAA 57.271 40.000 0.00 0.00 46.13 3.68
1348 1421 2.360165 AGATCCCAAATCAGCAAATCGC 59.640 45.455 0.00 0.00 42.91 4.58
1384 1461 2.522923 ATCTCGGCGAGGGATGCT 60.523 61.111 33.93 11.32 38.98 3.79
1441 1518 1.549170 CGGTACTGGTCCTTGTAGCTT 59.451 52.381 16.74 0.00 35.69 3.74
1485 1562 2.178890 GGCATCGGAGCAAGAGCAG 61.179 63.158 2.61 0.00 45.49 4.24
1487 1564 1.099879 ATTGGCATCGGAGCAAGAGC 61.100 55.000 0.00 0.00 42.56 4.09
1488 1565 2.245159 TATTGGCATCGGAGCAAGAG 57.755 50.000 0.00 0.00 35.83 2.85
1489 1566 2.564771 CTTATTGGCATCGGAGCAAGA 58.435 47.619 0.00 0.00 35.83 3.02
1493 1570 1.571460 CGCTTATTGGCATCGGAGC 59.429 57.895 0.00 0.00 0.00 4.70
1494 1571 1.571460 GCGCTTATTGGCATCGGAG 59.429 57.895 0.00 0.00 0.00 4.63
1503 1580 2.021380 GTGCCGTCGCGCTTATTG 59.979 61.111 5.56 0.00 42.47 1.90
1523 1600 8.125978 AGTCCAAGCAGAAATGAAATGATTAA 57.874 30.769 0.00 0.00 0.00 1.40
1524 1601 7.707624 AGTCCAAGCAGAAATGAAATGATTA 57.292 32.000 0.00 0.00 0.00 1.75
1525 1602 6.600882 AGTCCAAGCAGAAATGAAATGATT 57.399 33.333 0.00 0.00 0.00 2.57
1527 1604 6.149973 CAGTAGTCCAAGCAGAAATGAAATGA 59.850 38.462 0.00 0.00 0.00 2.57
1528 1605 6.149973 TCAGTAGTCCAAGCAGAAATGAAATG 59.850 38.462 0.00 0.00 0.00 2.32
1554 1631 5.160699 ACCATTCATTTCGATCGACATTG 57.839 39.130 19.26 15.12 0.00 2.82
1585 1662 0.666374 AAAACCGCACCTACAACAGC 59.334 50.000 0.00 0.00 0.00 4.40
1589 1666 1.457009 GGCCAAAACCGCACCTACAA 61.457 55.000 0.00 0.00 0.00 2.41
1625 1702 1.079503 GCAACAGCTTCTTAGACCCG 58.920 55.000 0.00 0.00 0.00 5.28
1688 1765 2.081462 GGAAGGTAACCATTGACCACG 58.919 52.381 0.00 0.00 38.27 4.94
1703 1780 2.472695 TCAAGTTGATGGACGGAAGG 57.527 50.000 0.08 0.00 0.00 3.46
1751 1830 5.355350 ACAAGCAATTATACAGTCAAGAGGC 59.645 40.000 0.00 0.00 0.00 4.70
1759 1838 8.848474 AGTACAGAAACAAGCAATTATACAGT 57.152 30.769 0.00 0.00 0.00 3.55
1819 1898 8.865001 CAGAAAGTTCAAGATAGCTACAGTAAC 58.135 37.037 0.00 0.00 0.00 2.50
1821 1900 8.123639 ACAGAAAGTTCAAGATAGCTACAGTA 57.876 34.615 0.00 0.00 0.00 2.74
1823 1902 7.319646 AGACAGAAAGTTCAAGATAGCTACAG 58.680 38.462 0.00 0.00 0.00 2.74
1831 1911 7.939039 TGTCCATAAAGACAGAAAGTTCAAGAT 59.061 33.333 0.00 0.00 41.78 2.40
1844 1924 9.522804 GTGTTTATTTGTTTGTCCATAAAGACA 57.477 29.630 0.00 0.00 44.89 3.41
1851 1931 6.549364 TCTCCAGTGTTTATTTGTTTGTCCAT 59.451 34.615 0.00 0.00 0.00 3.41
1864 1944 7.015292 ACACTAAACTGATCTCTCCAGTGTTTA 59.985 37.037 13.61 0.00 43.42 2.01
1865 1945 6.183361 ACACTAAACTGATCTCTCCAGTGTTT 60.183 38.462 13.61 0.00 43.42 2.83
1868 1948 5.398603 ACACTAAACTGATCTCTCCAGTG 57.601 43.478 12.67 12.67 43.42 3.66
1870 1950 6.516739 TGTACACTAAACTGATCTCTCCAG 57.483 41.667 0.00 0.00 37.64 3.86
1886 1966 8.739972 CCAGGCTTTAAATTAATCTTGTACACT 58.260 33.333 0.00 0.00 0.00 3.55
1887 1967 8.520351 ACCAGGCTTTAAATTAATCTTGTACAC 58.480 33.333 0.00 0.00 0.00 2.90
1888 1968 8.644374 ACCAGGCTTTAAATTAATCTTGTACA 57.356 30.769 0.00 0.00 0.00 2.90
1889 1969 9.923143 AAACCAGGCTTTAAATTAATCTTGTAC 57.077 29.630 0.00 0.00 0.00 2.90
1891 1971 8.870116 AGAAACCAGGCTTTAAATTAATCTTGT 58.130 29.630 0.00 0.00 0.00 3.16
1932 2012 3.354397 GTTAAAGCCAATTGATCGCTCG 58.646 45.455 7.12 0.00 30.92 5.03
1933 2013 3.378427 AGGTTAAAGCCAATTGATCGCTC 59.622 43.478 7.12 0.00 30.92 5.03
2115 2202 4.576330 AATGGAAATCGGAGAGGAAACT 57.424 40.909 0.00 0.00 43.63 2.66
2116 2203 6.944234 ATTAATGGAAATCGGAGAGGAAAC 57.056 37.500 0.00 0.00 43.63 2.78
2117 2204 8.029782 TCTATTAATGGAAATCGGAGAGGAAA 57.970 34.615 0.00 0.00 43.63 3.13
2118 2205 7.612065 TCTATTAATGGAAATCGGAGAGGAA 57.388 36.000 0.00 0.00 43.63 3.36
2119 2206 7.612065 TTCTATTAATGGAAATCGGAGAGGA 57.388 36.000 11.45 0.00 43.63 3.71
2120 2207 8.854614 ATTTCTATTAATGGAAATCGGAGAGG 57.145 34.615 25.71 0.00 42.05 3.69
2130 2217 9.878667 TGTAAGACGTGATTTCTATTAATGGAA 57.121 29.630 9.95 9.95 0.00 3.53
2131 2218 9.878667 TTGTAAGACGTGATTTCTATTAATGGA 57.121 29.630 0.00 0.00 0.00 3.41
2139 2226 9.970395 TTTCTAGTTTGTAAGACGTGATTTCTA 57.030 29.630 0.00 0.00 0.00 2.10
2140 2227 8.762426 GTTTCTAGTTTGTAAGACGTGATTTCT 58.238 33.333 0.00 0.00 0.00 2.52
2141 2228 8.545420 TGTTTCTAGTTTGTAAGACGTGATTTC 58.455 33.333 0.00 0.00 0.00 2.17
2142 2229 8.428186 TGTTTCTAGTTTGTAAGACGTGATTT 57.572 30.769 0.00 0.00 0.00 2.17
2143 2230 7.924412 TCTGTTTCTAGTTTGTAAGACGTGATT 59.076 33.333 0.00 0.00 0.00 2.57
2144 2231 7.431249 TCTGTTTCTAGTTTGTAAGACGTGAT 58.569 34.615 0.00 0.00 0.00 3.06
2145 2232 6.798482 TCTGTTTCTAGTTTGTAAGACGTGA 58.202 36.000 0.00 0.00 0.00 4.35
2146 2233 7.459394 TTCTGTTTCTAGTTTGTAAGACGTG 57.541 36.000 0.00 0.00 0.00 4.49
2147 2234 7.977853 TCTTTCTGTTTCTAGTTTGTAAGACGT 59.022 33.333 0.00 0.00 0.00 4.34
2148 2235 8.348983 TCTTTCTGTTTCTAGTTTGTAAGACG 57.651 34.615 0.00 0.00 0.00 4.18
2158 2245 9.892130 TCTTCTCTTTTTCTTTCTGTTTCTAGT 57.108 29.630 0.00 0.00 0.00 2.57
2161 2248 9.847706 GTTTCTTCTCTTTTTCTTTCTGTTTCT 57.152 29.630 0.00 0.00 0.00 2.52
2162 2249 8.789743 CGTTTCTTCTCTTTTTCTTTCTGTTTC 58.210 33.333 0.00 0.00 0.00 2.78
2163 2250 8.512138 TCGTTTCTTCTCTTTTTCTTTCTGTTT 58.488 29.630 0.00 0.00 0.00 2.83
2164 2251 8.040716 TCGTTTCTTCTCTTTTTCTTTCTGTT 57.959 30.769 0.00 0.00 0.00 3.16
2165 2252 7.201652 CCTCGTTTCTTCTCTTTTTCTTTCTGT 60.202 37.037 0.00 0.00 0.00 3.41
2166 2253 7.128976 CCTCGTTTCTTCTCTTTTTCTTTCTG 58.871 38.462 0.00 0.00 0.00 3.02
2167 2254 6.238511 GCCTCGTTTCTTCTCTTTTTCTTTCT 60.239 38.462 0.00 0.00 0.00 2.52
2168 2255 5.910166 GCCTCGTTTCTTCTCTTTTTCTTTC 59.090 40.000 0.00 0.00 0.00 2.62
2169 2256 5.221067 GGCCTCGTTTCTTCTCTTTTTCTTT 60.221 40.000 0.00 0.00 0.00 2.52
2170 2257 4.276183 GGCCTCGTTTCTTCTCTTTTTCTT 59.724 41.667 0.00 0.00 0.00 2.52
2171 2258 3.815962 GGCCTCGTTTCTTCTCTTTTTCT 59.184 43.478 0.00 0.00 0.00 2.52
2172 2259 3.564225 TGGCCTCGTTTCTTCTCTTTTTC 59.436 43.478 3.32 0.00 0.00 2.29
2173 2260 3.551846 TGGCCTCGTTTCTTCTCTTTTT 58.448 40.909 3.32 0.00 0.00 1.94
2174 2261 3.208747 TGGCCTCGTTTCTTCTCTTTT 57.791 42.857 3.32 0.00 0.00 2.27
2175 2262 2.930826 TGGCCTCGTTTCTTCTCTTT 57.069 45.000 3.32 0.00 0.00 2.52
2176 2263 2.569404 AGATGGCCTCGTTTCTTCTCTT 59.431 45.455 3.32 0.00 0.00 2.85
2177 2264 2.167487 GAGATGGCCTCGTTTCTTCTCT 59.833 50.000 3.32 0.00 32.43 3.10
2178 2265 2.545731 GAGATGGCCTCGTTTCTTCTC 58.454 52.381 3.32 0.00 31.32 2.87
2179 2266 1.208293 GGAGATGGCCTCGTTTCTTCT 59.792 52.381 3.32 0.00 42.89 2.85
2180 2267 1.657822 GGAGATGGCCTCGTTTCTTC 58.342 55.000 3.32 0.00 42.89 2.87
2181 2268 0.253327 GGGAGATGGCCTCGTTTCTT 59.747 55.000 3.32 0.00 42.89 2.52
2182 2269 1.627297 GGGGAGATGGCCTCGTTTCT 61.627 60.000 3.32 0.00 42.89 2.52
2183 2270 1.153147 GGGGAGATGGCCTCGTTTC 60.153 63.158 3.32 0.00 42.89 2.78
2184 2271 2.680370 GGGGGAGATGGCCTCGTTT 61.680 63.158 3.32 0.00 42.89 3.60
2185 2272 3.090532 GGGGGAGATGGCCTCGTT 61.091 66.667 3.32 0.00 42.89 3.85
2186 2273 4.095400 AGGGGGAGATGGCCTCGT 62.095 66.667 3.32 0.00 42.89 4.18
2187 2274 3.554342 CAGGGGGAGATGGCCTCG 61.554 72.222 3.32 0.00 42.89 4.63
2188 2275 3.174265 CCAGGGGGAGATGGCCTC 61.174 72.222 3.32 0.00 41.22 4.70
2189 2276 3.603330 AACCAGGGGGAGATGGCCT 62.603 63.158 3.32 0.00 40.45 5.19
2190 2277 3.023735 AACCAGGGGGAGATGGCC 61.024 66.667 0.00 0.00 40.45 5.36
2191 2278 1.575447 AAGAACCAGGGGGAGATGGC 61.575 60.000 0.00 0.00 40.45 4.40
2192 2279 1.002857 AAAGAACCAGGGGGAGATGG 58.997 55.000 0.00 0.00 42.60 3.51
2193 2280 1.355720 ACAAAGAACCAGGGGGAGATG 59.644 52.381 0.00 0.00 38.05 2.90
2194 2281 1.636003 GACAAAGAACCAGGGGGAGAT 59.364 52.381 0.00 0.00 38.05 2.75
2195 2282 1.064825 GACAAAGAACCAGGGGGAGA 58.935 55.000 0.00 0.00 38.05 3.71
2196 2283 0.771127 TGACAAAGAACCAGGGGGAG 59.229 55.000 0.00 0.00 38.05 4.30
2197 2284 1.133606 GTTGACAAAGAACCAGGGGGA 60.134 52.381 0.00 0.00 38.05 4.81
2198 2285 1.133482 AGTTGACAAAGAACCAGGGGG 60.133 52.381 0.00 0.00 41.29 5.40
2199 2286 2.158608 AGAGTTGACAAAGAACCAGGGG 60.159 50.000 0.00 0.00 0.00 4.79
2200 2287 2.880890 CAGAGTTGACAAAGAACCAGGG 59.119 50.000 0.00 0.00 0.00 4.45
2201 2288 2.291741 GCAGAGTTGACAAAGAACCAGG 59.708 50.000 0.00 0.00 0.00 4.45
2202 2289 3.209410 AGCAGAGTTGACAAAGAACCAG 58.791 45.455 0.00 0.00 0.00 4.00
2203 2290 3.281727 AGCAGAGTTGACAAAGAACCA 57.718 42.857 0.00 0.00 0.00 3.67
2204 2291 3.003793 GGAAGCAGAGTTGACAAAGAACC 59.996 47.826 0.00 0.00 0.00 3.62
2205 2292 3.303395 CGGAAGCAGAGTTGACAAAGAAC 60.303 47.826 0.00 0.00 0.00 3.01
2206 2293 2.872245 CGGAAGCAGAGTTGACAAAGAA 59.128 45.455 0.00 0.00 0.00 2.52
2207 2294 2.102420 TCGGAAGCAGAGTTGACAAAGA 59.898 45.455 0.00 0.00 0.00 2.52
2208 2295 2.483876 TCGGAAGCAGAGTTGACAAAG 58.516 47.619 0.00 0.00 0.00 2.77
2209 2296 2.613026 TCGGAAGCAGAGTTGACAAA 57.387 45.000 0.00 0.00 0.00 2.83
2210 2297 2.483876 CTTCGGAAGCAGAGTTGACAA 58.516 47.619 4.57 0.00 0.00 3.18
2211 2298 1.270305 CCTTCGGAAGCAGAGTTGACA 60.270 52.381 12.29 0.00 0.00 3.58
2212 2299 1.433534 CCTTCGGAAGCAGAGTTGAC 58.566 55.000 12.29 0.00 0.00 3.18
2213 2300 0.321671 CCCTTCGGAAGCAGAGTTGA 59.678 55.000 12.29 0.00 0.00 3.18
2214 2301 0.321671 TCCCTTCGGAAGCAGAGTTG 59.678 55.000 12.29 0.00 34.19 3.16
2215 2302 0.610687 CTCCCTTCGGAAGCAGAGTT 59.389 55.000 19.80 0.00 37.86 3.01
2216 2303 0.543174 ACTCCCTTCGGAAGCAGAGT 60.543 55.000 24.47 24.47 37.86 3.24
2217 2304 0.108424 CACTCCCTTCGGAAGCAGAG 60.108 60.000 23.55 23.55 37.86 3.35
2218 2305 0.541998 TCACTCCCTTCGGAAGCAGA 60.542 55.000 12.29 9.81 37.86 4.26
2219 2306 0.321671 TTCACTCCCTTCGGAAGCAG 59.678 55.000 12.29 11.78 37.86 4.24
2220 2307 0.762418 TTTCACTCCCTTCGGAAGCA 59.238 50.000 12.29 0.23 37.86 3.91
2221 2308 1.443802 CTTTCACTCCCTTCGGAAGC 58.556 55.000 12.29 0.00 37.86 3.86
2222 2309 1.623811 TCCTTTCACTCCCTTCGGAAG 59.376 52.381 10.82 10.82 37.86 3.46
2223 2310 1.623811 CTCCTTTCACTCCCTTCGGAA 59.376 52.381 0.00 0.00 37.86 4.30
2224 2311 1.267121 CTCCTTTCACTCCCTTCGGA 58.733 55.000 0.00 0.00 36.45 4.55
2225 2312 0.391793 GCTCCTTTCACTCCCTTCGG 60.392 60.000 0.00 0.00 0.00 4.30
2226 2313 0.391793 GGCTCCTTTCACTCCCTTCG 60.392 60.000 0.00 0.00 0.00 3.79
2227 2314 0.693049 TGGCTCCTTTCACTCCCTTC 59.307 55.000 0.00 0.00 0.00 3.46
2228 2315 1.283321 GATGGCTCCTTTCACTCCCTT 59.717 52.381 0.00 0.00 0.00 3.95
2229 2316 0.915364 GATGGCTCCTTTCACTCCCT 59.085 55.000 0.00 0.00 0.00 4.20
2230 2317 0.106967 GGATGGCTCCTTTCACTCCC 60.107 60.000 0.00 0.00 38.65 4.30
2231 2318 0.106967 GGGATGGCTCCTTTCACTCC 60.107 60.000 3.54 0.00 41.74 3.85
2232 2319 0.915364 AGGGATGGCTCCTTTCACTC 59.085 55.000 3.54 0.00 41.74 3.51
2233 2320 0.915364 GAGGGATGGCTCCTTTCACT 59.085 55.000 3.54 0.00 41.74 3.41
2234 2321 0.462759 CGAGGGATGGCTCCTTTCAC 60.463 60.000 3.54 0.00 41.74 3.18
2235 2322 1.907739 CGAGGGATGGCTCCTTTCA 59.092 57.895 3.54 0.00 41.74 2.69
2236 2323 1.524849 GCGAGGGATGGCTCCTTTC 60.525 63.158 0.00 2.21 41.74 2.62
2237 2324 1.997874 AGCGAGGGATGGCTCCTTT 60.998 57.895 0.00 0.00 41.74 3.11
2238 2325 2.366167 AGCGAGGGATGGCTCCTT 60.366 61.111 0.00 0.00 41.74 3.36
2242 2329 2.447379 ATGGAGCGAGGGATGGCT 60.447 61.111 0.00 0.00 43.42 4.75
2243 2330 2.031768 GATGGAGCGAGGGATGGC 59.968 66.667 0.00 0.00 0.00 4.40
2244 2331 1.486997 ATGGATGGAGCGAGGGATGG 61.487 60.000 0.00 0.00 0.00 3.51
2245 2332 1.269958 TATGGATGGAGCGAGGGATG 58.730 55.000 0.00 0.00 0.00 3.51
2246 2333 2.030027 TTATGGATGGAGCGAGGGAT 57.970 50.000 0.00 0.00 0.00 3.85
2247 2334 1.902508 GATTATGGATGGAGCGAGGGA 59.097 52.381 0.00 0.00 0.00 4.20
2248 2335 1.065854 GGATTATGGATGGAGCGAGGG 60.066 57.143 0.00 0.00 0.00 4.30
2249 2336 1.905215 AGGATTATGGATGGAGCGAGG 59.095 52.381 0.00 0.00 0.00 4.63
2250 2337 2.093764 GGAGGATTATGGATGGAGCGAG 60.094 54.545 0.00 0.00 0.00 5.03
2251 2338 1.902508 GGAGGATTATGGATGGAGCGA 59.097 52.381 0.00 0.00 0.00 4.93
2252 2339 1.404717 CGGAGGATTATGGATGGAGCG 60.405 57.143 0.00 0.00 0.00 5.03
2253 2340 1.902508 TCGGAGGATTATGGATGGAGC 59.097 52.381 0.00 0.00 0.00 4.70
2254 2341 4.202357 TGTTTCGGAGGATTATGGATGGAG 60.202 45.833 0.00 0.00 0.00 3.86
2255 2342 3.714280 TGTTTCGGAGGATTATGGATGGA 59.286 43.478 0.00 0.00 0.00 3.41
2256 2343 4.067896 CTGTTTCGGAGGATTATGGATGG 58.932 47.826 0.00 0.00 0.00 3.51
2257 2344 4.067896 CCTGTTTCGGAGGATTATGGATG 58.932 47.826 0.00 0.00 31.48 3.51
2258 2345 3.716872 ACCTGTTTCGGAGGATTATGGAT 59.283 43.478 0.00 0.00 34.37 3.41
2259 2346 3.112263 ACCTGTTTCGGAGGATTATGGA 58.888 45.455 0.00 0.00 34.37 3.41
2260 2347 3.560636 ACCTGTTTCGGAGGATTATGG 57.439 47.619 0.00 0.00 34.37 2.74
2261 2348 5.069251 AGTCTACCTGTTTCGGAGGATTATG 59.931 44.000 0.00 0.00 34.37 1.90
2262 2349 5.209659 AGTCTACCTGTTTCGGAGGATTAT 58.790 41.667 0.00 0.00 34.37 1.28
2263 2350 4.607239 AGTCTACCTGTTTCGGAGGATTA 58.393 43.478 0.00 0.00 34.37 1.75
2264 2351 3.442076 AGTCTACCTGTTTCGGAGGATT 58.558 45.455 0.00 0.00 34.37 3.01
2265 2352 3.103080 AGTCTACCTGTTTCGGAGGAT 57.897 47.619 0.00 0.00 34.37 3.24
2266 2353 2.599408 AGTCTACCTGTTTCGGAGGA 57.401 50.000 0.00 0.00 34.37 3.71
2267 2354 3.679824 AAAGTCTACCTGTTTCGGAGG 57.320 47.619 0.00 0.00 36.57 4.30
2268 2355 4.928020 GGTAAAAGTCTACCTGTTTCGGAG 59.072 45.833 0.00 0.00 38.69 4.63
2269 2356 4.559300 CGGTAAAAGTCTACCTGTTTCGGA 60.559 45.833 0.00 0.00 39.46 4.55
2270 2357 3.676646 CGGTAAAAGTCTACCTGTTTCGG 59.323 47.826 0.00 0.00 39.46 4.30
2271 2358 4.549458 TCGGTAAAAGTCTACCTGTTTCG 58.451 43.478 0.00 0.00 39.46 3.46
2272 2359 4.928020 CCTCGGTAAAAGTCTACCTGTTTC 59.072 45.833 0.00 0.00 39.46 2.78
2273 2360 4.262765 CCCTCGGTAAAAGTCTACCTGTTT 60.263 45.833 0.00 0.00 39.46 2.83
2274 2361 3.260128 CCCTCGGTAAAAGTCTACCTGTT 59.740 47.826 0.00 0.00 39.46 3.16
2275 2362 2.830321 CCCTCGGTAAAAGTCTACCTGT 59.170 50.000 0.00 0.00 39.46 4.00
2276 2363 2.167900 CCCCTCGGTAAAAGTCTACCTG 59.832 54.545 0.00 0.00 39.46 4.00
2277 2364 2.464782 CCCCTCGGTAAAAGTCTACCT 58.535 52.381 0.00 0.00 39.46 3.08
2278 2365 1.483827 CCCCCTCGGTAAAAGTCTACC 59.516 57.143 0.00 0.00 38.41 3.18
2279 2366 2.429971 CTCCCCCTCGGTAAAAGTCTAC 59.570 54.545 0.00 0.00 0.00 2.59
2280 2367 2.312741 TCTCCCCCTCGGTAAAAGTCTA 59.687 50.000 0.00 0.00 0.00 2.59
2281 2368 1.078324 TCTCCCCCTCGGTAAAAGTCT 59.922 52.381 0.00 0.00 0.00 3.24
2282 2369 1.565067 TCTCCCCCTCGGTAAAAGTC 58.435 55.000 0.00 0.00 0.00 3.01
2283 2370 2.117051 GATCTCCCCCTCGGTAAAAGT 58.883 52.381 0.00 0.00 0.00 2.66
2284 2371 2.399580 AGATCTCCCCCTCGGTAAAAG 58.600 52.381 0.00 0.00 0.00 2.27
2285 2372 2.563039 AGATCTCCCCCTCGGTAAAA 57.437 50.000 0.00 0.00 0.00 1.52
2286 2373 3.052338 ACTTAGATCTCCCCCTCGGTAAA 60.052 47.826 0.00 0.00 0.00 2.01
2287 2374 2.517127 ACTTAGATCTCCCCCTCGGTAA 59.483 50.000 0.00 0.00 0.00 2.85
2288 2375 2.141911 ACTTAGATCTCCCCCTCGGTA 58.858 52.381 0.00 0.00 0.00 4.02
2289 2376 0.935194 ACTTAGATCTCCCCCTCGGT 59.065 55.000 0.00 0.00 0.00 4.69
2290 2377 2.973983 TACTTAGATCTCCCCCTCGG 57.026 55.000 0.00 0.00 0.00 4.63
2291 2378 3.511934 CCATTACTTAGATCTCCCCCTCG 59.488 52.174 0.00 0.00 0.00 4.63
2292 2379 4.753186 TCCATTACTTAGATCTCCCCCTC 58.247 47.826 0.00 0.00 0.00 4.30
2293 2380 4.852991 TCCATTACTTAGATCTCCCCCT 57.147 45.455 0.00 0.00 0.00 4.79
2294 2381 4.658901 TGTTCCATTACTTAGATCTCCCCC 59.341 45.833 0.00 0.00 0.00 5.40
2295 2382 5.454897 GGTGTTCCATTACTTAGATCTCCCC 60.455 48.000 0.00 0.00 0.00 4.81
2296 2383 5.367060 AGGTGTTCCATTACTTAGATCTCCC 59.633 44.000 0.00 0.00 35.89 4.30
2297 2384 6.487299 AGGTGTTCCATTACTTAGATCTCC 57.513 41.667 0.00 0.00 35.89 3.71
2298 2385 8.466617 TCTAGGTGTTCCATTACTTAGATCTC 57.533 38.462 0.00 0.00 32.63 2.75
2299 2386 7.507616 CCTCTAGGTGTTCCATTACTTAGATCT 59.492 40.741 0.00 0.00 35.72 2.75
2300 2387 7.506261 TCCTCTAGGTGTTCCATTACTTAGATC 59.494 40.741 0.00 0.00 35.72 2.75
2301 2388 7.363031 TCCTCTAGGTGTTCCATTACTTAGAT 58.637 38.462 0.00 0.00 35.72 1.98
2302 2389 6.738635 TCCTCTAGGTGTTCCATTACTTAGA 58.261 40.000 0.00 0.00 35.21 2.10
2303 2390 7.124448 ACTTCCTCTAGGTGTTCCATTACTTAG 59.876 40.741 0.00 0.00 36.34 2.18
2304 2391 6.958192 ACTTCCTCTAGGTGTTCCATTACTTA 59.042 38.462 0.00 0.00 36.34 2.24
2305 2392 5.785940 ACTTCCTCTAGGTGTTCCATTACTT 59.214 40.000 0.00 0.00 36.34 2.24
2306 2393 5.342866 ACTTCCTCTAGGTGTTCCATTACT 58.657 41.667 0.00 0.00 36.34 2.24
2307 2394 5.678955 ACTTCCTCTAGGTGTTCCATTAC 57.321 43.478 0.00 0.00 36.34 1.89
2308 2395 6.296259 GGAAACTTCCTCTAGGTGTTCCATTA 60.296 42.308 0.97 0.00 44.11 1.90
2309 2396 5.515008 GGAAACTTCCTCTAGGTGTTCCATT 60.515 44.000 0.97 1.41 44.11 3.16
2310 2397 4.019231 GGAAACTTCCTCTAGGTGTTCCAT 60.019 45.833 0.97 1.65 44.11 3.41
2311 2398 3.326880 GGAAACTTCCTCTAGGTGTTCCA 59.673 47.826 0.97 0.00 44.11 3.53
2312 2399 3.940319 GGAAACTTCCTCTAGGTGTTCC 58.060 50.000 0.97 8.08 44.11 3.62
2334 2421 2.297033 GGTGTGCAAACCAAGATCACAT 59.703 45.455 21.89 0.00 39.45 3.21
2441 2528 3.957497 GAGATTAAGAGAGGCAGGACTGA 59.043 47.826 3.00 0.00 0.00 3.41
2444 2531 4.649218 AGAAGAGATTAAGAGAGGCAGGAC 59.351 45.833 0.00 0.00 0.00 3.85
2446 2533 5.612725 AAGAAGAGATTAAGAGAGGCAGG 57.387 43.478 0.00 0.00 0.00 4.85
2512 2599 5.633927 AGTGACGTTTTCGCTTAAGTTTTT 58.366 33.333 4.02 0.00 42.87 1.94
2554 2641 6.071728 TGTTTGGGTTGCAAAATTTTGTGATT 60.072 30.769 27.13 0.00 40.24 2.57
2571 2658 7.391554 CGAGATAATATCATCCATTGTTTGGGT 59.608 37.037 2.84 0.00 46.45 4.51
2603 2690 4.763793 CCATCTTCTGATGTCTGGTTGTTT 59.236 41.667 5.48 0.00 46.38 2.83
2660 2747 2.046988 CGCAGTGCAGGTCCATCA 60.047 61.111 16.83 0.00 0.00 3.07
2747 2834 5.653330 ACATAAAGGTGCATTGACATGATCA 59.347 36.000 0.00 0.00 34.65 2.92
2779 2866 1.450312 CAGGAAGCTAAGGGTGCCG 60.450 63.158 0.00 0.00 43.27 5.69
2797 2884 5.287035 CCTTCAATGAACGCATTAGAAAAGC 59.713 40.000 0.00 0.00 42.66 3.51
2810 2897 6.183360 GCCAGTTTAGGATACCTTCAATGAAC 60.183 42.308 0.00 0.00 34.61 3.18
2839 2929 5.417894 TGTCCCATACTACAGTAAGTCAGTG 59.582 44.000 0.00 0.00 33.76 3.66
2856 2946 1.355381 TGCACCATCTTCTTGTCCCAT 59.645 47.619 0.00 0.00 0.00 4.00
2964 3054 3.490759 GTCTGTGCATGACCGCCG 61.491 66.667 10.54 0.00 0.00 6.46
3120 3210 9.140286 GGAAAATAAGTTCAATAAAACAGGCTC 57.860 33.333 0.00 0.00 0.00 4.70
3184 3274 3.243301 GGCATACCTGACAATCATTGCAG 60.243 47.826 12.40 12.40 35.78 4.41
3418 3508 8.149647 AGTTTTGCTGAATCAAATAATCAACCA 58.850 29.630 0.00 0.00 36.04 3.67
3514 3604 5.163457 TGCTGGATAATCGATGTACAACAGA 60.163 40.000 0.00 0.00 0.00 3.41
3556 3649 1.454276 ACGAGTAACATGCAACGTTCG 59.546 47.619 8.04 8.83 0.00 3.95
3560 3653 2.941891 AACACGAGTAACATGCAACG 57.058 45.000 0.00 0.00 0.00 4.10
3575 3668 8.721478 TGCTGAGACAAAGAAAGATAATAACAC 58.279 33.333 0.00 0.00 0.00 3.32
3657 3751 6.480524 TCAAGATAACAAACATGGTCTTCG 57.519 37.500 0.00 0.00 0.00 3.79
3662 3756 7.092716 GCTTTGATCAAGATAACAAACATGGT 58.907 34.615 8.41 0.00 33.80 3.55
3672 3766 7.649533 ACAATCCATGCTTTGATCAAGATAA 57.350 32.000 8.41 0.00 33.80 1.75
3696 3790 4.951254 TGTGTCAGACGAATACTTTGGAA 58.049 39.130 0.00 0.00 0.00 3.53
3809 3931 8.206189 TCTGATACTGTTTGATTCTATGCATGA 58.794 33.333 10.16 1.87 0.00 3.07
3846 3968 9.396022 GTCCATATTCAGATAAAGGAAGAAACA 57.604 33.333 0.00 0.00 31.68 2.83
3889 4013 7.216494 TGTCTTGTTGTATCAAGTTGAGATGA 58.784 34.615 11.91 0.00 43.44 2.92
3915 4039 5.538118 TGTATATACTGCACTATGCCACAC 58.462 41.667 13.89 0.00 44.23 3.82
3916 4040 5.799827 TGTATATACTGCACTATGCCACA 57.200 39.130 13.89 0.00 44.23 4.17
3925 4049 9.603298 CAAATCATTGACATGTATATACTGCAC 57.397 33.333 13.89 8.14 38.94 4.57
3950 4074 5.155278 AGACCGTCATGTTTTATGTACCA 57.845 39.130 0.40 0.00 0.00 3.25
3951 4075 6.101332 TGTAGACCGTCATGTTTTATGTACC 58.899 40.000 0.40 0.00 0.00 3.34
3993 4118 8.418597 AGTGTTCTACTCTGTTATTACTTCCA 57.581 34.615 0.00 0.00 33.17 3.53
4074 4199 4.518970 GGCTACAATCCAAGAAACTTGACA 59.481 41.667 12.25 0.50 0.00 3.58
4122 4247 2.483876 AGACATCAATGGGCGTATTCG 58.516 47.619 0.00 0.00 40.37 3.34
4248 4374 4.341863 ACCCTGTATGTCCCAGTACTTA 57.658 45.455 0.00 0.00 0.00 2.24
4418 4544 0.392998 ATCTGCTCACCGGCGAAAAT 60.393 50.000 9.30 0.00 34.52 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.